BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:94793|NCBI_annot:ORF023|genbank:acc:YP_2 40543;genbank:gi:66396214;genbank:GeneID:5133573 (186 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: OR... 379 e-107 gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF... 379 e-107 gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF... 379 e-107 gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: sim... 379 e-107 gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF... 379 e-107 gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF... 379 e-107 gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF... 379 e-107 gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF... 375 e-106 gi|5903|lcl|protein:vir:107114 Length: 179 # NCBI annotation: hy... 299 2e-83 gi|10494|lcl|protein:vir:105312 Length: 179 # NCBI annotation: c... 299 2e-83 gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF... 172 2e-45 gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: ma... 172 2e-45 gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF... 172 2e-45 gi|8742|lcl|protein:vir:96900 Length: 180 # NCBI annotation: ORF... 170 1e-44 gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF... 143 2e-36 gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hyp... 40 1e-05 gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: maj... 33 0.003 gi|15364|lcl|protein:vir:9932 Length: 199 # NCBI annotation: hyp... 24 1.3 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 24 1.5 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 23 2.3 gi|13703|lcl|protein:vir:4908 Length: 168 # NCBI annotation: gp1... 22 3.7 gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13... 22 6.3 >gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240756;genbank:gi:66396432;genbank:GeneID :5133776 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF022 # Family: family:all:913 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240466;genbank:gi:66396135;genbank:GeneID :5133504 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240618;genbank:gi:66396288;genbank:GeneID :5133680 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: similar to phage Spp1 gp17.1 # Family: family:all:913 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510944;genbank:gi:17426278;genbank:GeneID :927369 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240683;genbank:gi:66396358;genbank:GeneID :5133751 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240543;genbank:gi:66396214;genbank:GeneID :5133573 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240392;genbank:gi:66396063;genbank:GeneID :5133471 Length = 186 Score = 379 bits (973), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240830;genbank:gi:66394694;genbank:GeneID :5133902 Length = 186 Score = 375 bits (962), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/186 (98%), Positives = 185/186 (99%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR+GKHHGVFAYVVIEEHEWSFD Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKREGKHHGVFAYVVIEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTAG 180 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKK TAG Sbjct: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKITAG 180 Query: 181 SSDLSM 186 SSDLSM Sbjct: 181 SSDLSM 186 >gi|5903|lcl|protein:vir:107114 Length: 179 # NCBI annotation: hypothetical protein # Family: family:all:913 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950612;genbank:gi:119953692;genbank:GeneI D:4643123 Length = 179 Score = 299 bits (765), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 144/179 (80%), Positives = 156/179 (87%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ+KYI ALQIADKDLA KL E+A LL SLAEGGHTISNDLAE+I GGKKDY RNSVE Sbjct: 1 MAQNKYIAALQIADKDLASKLKEEDAILLASLAEGGHTISNDLAEMITGGKKDYGRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLT+D VPGDKGQ ALKESVK FKQLR+WIWE KKRDGKHHG FAYV++EEHEWSFD Sbjct: 61 EEIKLTVDRVPGDKGQEALKESVKNFKQLRLWIWEVKKRDGKHHGTFAYVIVEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DED+KIEITAKVKFNSADG+++ LP EWLNPSA AP VE+EDM AY DSYENRT A Sbjct: 121 DEDDKIEITAKVKFNSADGSVDSLPPEWLNPSAAAPTVEWEDMGAYTDSYENRTPSAGA 179 >gi|10494|lcl|protein:vir:105312 Length: 179 # NCBI annotation: conserved phage protein # Family: family:all:913 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950675;genbank:gi:119967845;genbank:GeneI D:4643191 Length = 179 Score = 299 bits (765), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 144/179 (80%), Positives = 156/179 (87%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ+KYI ALQIADKDLA KL E+A LL SLAEGGHTISNDLAE+I GGKKDY RNSVE Sbjct: 1 MAQNKYIAALQIADKDLASKLKEEDAILLASLAEGGHTISNDLAEMITGGKKDYGRNSVE 60 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFD 120 EEIKLT+D VPGDKGQ ALKESVK FKQLR+WIWE KKRDGKHHG FAYV++EEHEWSFD Sbjct: 61 EEIKLTVDRVPGDKGQEALKESVKNFKQLRLWIWEVKKRDGKHHGTFAYVIVEEHEWSFD 120 Query: 121 DEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DED+KIEITAKVKFNSADG+++ LP EWLNPSA AP VE+EDM AY DSYENRT A Sbjct: 121 DEDDKIEITAKVKFNSADGSVDSLPPEWLNPSAAAPTVEWEDMGAYTDSYENRTPSAGA 179 >gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF020 # Family: family:all:913 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240241;genbank:gi:66395905;genbank:GeneID :5133297 Length = 185 Score = 172 bits (436), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 6/183 (3%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ Y+ ++ A+ DL E+ LL L EGGHTI NDLAEI++GGK DYS N++ Sbjct: 1 MAQKNYLAVVRPAETDLDPV----ESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMS 56 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 E KLT+ VPGDKG A+K +V+ QLR+W++E KR DGKHHG+F YVV E E SF Sbjct: 57 ESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSF 116 Query: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DDE +KIE++ KVK+N+A+G ++LPKEW +A AP VE+E ++EN+ K + Sbjct: 117 DDESDKIELSLKVKWNTAEGAEDNLPKEWFE-AAGAPTVEYEKFGEKVGTFENQKKASVV 175 Query: 180 GSS 182 S Sbjct: 176 SDS 178 >gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: major tail protein # Family: family:all:913 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004381;genbank:gi:122891836;genbank:Ge neID:4712383 Length = 185 Score = 172 bits (436), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 6/183 (3%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ Y+ ++ A+ DL E+ LL L EGGHTI NDLAEI++GGK DYS N++ Sbjct: 1 MAQKNYLAVVRPAETDLDPV----ESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMS 56 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 E KLT+ VPGDKG A+K +V+ QLR+W++E KR DGKHHG+F YVV E E SF Sbjct: 57 ESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSF 116 Query: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DDE +KIE++ KVK+N+A+G ++LPKEW +A AP VE+E ++EN+ K + Sbjct: 117 DDESDKIELSLKVKWNTAEGAEDNLPKEWFE-AAGAPTVEYEKFGEKVGTFENQKKASVV 175 Query: 180 GSS 182 S Sbjct: 176 SDS 178 >gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240318;genbank:gi:66395985;genbank:GeneID :5133388 Length = 185 Score = 172 bits (436), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 6/183 (3%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ Y+ ++ A+ DL E+ LL L EGGHTI NDLAEI++GGK DYS N++ Sbjct: 1 MAQKNYLAVVRPAETDLDPV----ESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMS 56 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 E KLT+ VPGDKG A+K +V+ QLR+W++E KR DGKHHG+F YVV E E SF Sbjct: 57 ESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSF 116 Query: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DDE +KIE++ KVK+N+A+G ++LPKEW +A AP VE+E ++EN+ K + Sbjct: 117 DDESDKIELSLKVKWNTAEGAEDNLPKEWFE-AAGAPTVEYEKFGEKVGTFENQKKASVV 175 Query: 180 GSS 182 S Sbjct: 176 SDS 178 >gi|8742|lcl|protein:vir:96900 Length: 180 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240163;genbank:gi:66395830;genbank:GeneID :5133241 Length = 180 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 Query: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 Query: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 Query: 180 GSSDLSM 186 SSDL + Sbjct: 175 -SSDLGV 180 >gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240085;genbank:gi:66395751;genbank:GeneID :5133137 Length = 187 Score = 143 bits (360), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 2/152 (1%) Query: 28 LLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVEEEIKLTLDVVPGDKGQLALKESVKQFK 87 L+ L EG IS +L+E I GK DYS SV EE+ LT +PGDKGQ K+++K K Sbjct: 22 LVSDLQEGETKISAELSEKIVAGKTDYSYQSVAEELNLTFGRIPGDKGQDQFKQAIKDRK 81 Query: 88 QLRVWIWETKKRDGKHHGVFAYVVIEEHEWSFDDEDNKIEITAKVKFNSADGTINDLPKE 147 Q++VW+ E KKR +H VF Y V+EE+ SFDDE++ IE+T KVKFN+ADG ++LP+ Sbjct: 82 QVKVWLIEKKKRTDGYHAVFGYAVVEEYGNSFDDEEDTIEVTVKVKFNTADGVFSELPQS 141 Query: 148 WLNPSALAPVVEFEDMNAYEDSYENR--TKKT 177 WL+ S VEFE Y E R T KT Sbjct: 142 WLDASVAGTTVEFEKPGEYTGDLEERESTSKT 173 >gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690680;genbank:geneid:6329148;genbank:gi: 22855074;interpro:IPR009341;interpro:IPR011855;uniprot:O 48449;genbank:GeneID:955320 Length = 177 Score = 40.4 bits (93), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 72 GDKGQLALKESVKQFKQLRVWIWET-KKRDGKHHGVFAYVVIEEHEWSFDDEDNKIEITA 130 GD GQ A++++ + KQ++ W +T K + K+ F + IE E+S D + +EI+ Sbjct: 72 GDAGQKAIEDAYQNGKQIKFWRVDTVKNENDKYDAQFGFAYIESREYS-DGVEGAVEISI 130 Query: 131 KVKFNS--ADGTINDLPKEWLNPS 152 ++ +G I+ LP+E +N S Sbjct: 131 SLQVIGELKNGEIDTLPEEIVNVS 154 >gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: major tail protein # Family: family:all:1095 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223895;genbank:gi:62327107;genbank:GeneID :5075521 Length = 199 Score = 32.7 bits (73), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Query: 60 EEEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-------DGKHHGVFAYVVI 112 E+ I++T +VPGD+ A+ ++ KQ++VW KR + +F Y ++ Sbjct: 70 EDSIEVTSYMVPGDEATDAIIKAKHDGKQIKVWRVIVDKRLAVTEDDHSAYPAMFGYGIV 129 Query: 113 EEHEWSFDDEDNKIEITAKVKFNSADGTI 141 + + S +D ++I+ T + DGT Sbjct: 130 DSADISDEDSFSEIDWTINILGKLVDGTF 158 >gi|15364|lcl|protein:vir:9932 Length: 199 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795694;genbank:gi:28876454;genbank:GeneID :1258025 Length = 199 Score = 23.9 bits (50), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 60 EEEIKLTLDVVPGDKGQLALKESVKQFKQLRVW 92 E I LT VP D ++E+ K K +++W Sbjct: 72 EHSIDLTTYFVPTDPSVAVIEEAKKTGKSIKIW 104 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 23.9 bits (50), Expect = 1.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 F +DG+++ L + W+ SALA + D Sbjct: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 23.1 bits (48), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 F +DG+++ L + W+ SALA + D Sbjct: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 >gi|13703|lcl|protein:vir:4908 Length: 168 # NCBI annotation: gp168 # Family: family:all:464 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056686;genbank:gi:9635021;genbank:GeneID: 1262686 Length = 168 Score = 22.3 bits (46), Expect = 3.7, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%) Query: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 + +DK ++ ++ DK A+KL ++ + T + D A + GG Sbjct: 9 LGKDKILMFRKLGDKTAARKLALQTEHEWEYSRDADSTKTKDGAVVADGGL--------- 59 Query: 61 EEIKLTLDVVPGDKGQL--ALKESVKQFKQLRVWIWET--KKRDGKHHGVFA 108 E KL++ + G K L LK SV ++ VW + KK GK+ ++A Sbjct: 60 -ETKLSISAI-GTKDDLNEMLKNSVVDGYKVEVWEIDLADKKSGGKYGALYA 109 >gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046908;genbank:gi:9630478;genbank:GeneID :1261652 Length = 245 Score = 21.6 bits (44), Expect = 6.3, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 62 EIKLTLDVVPGDKGQ 76 E LTL +PGD GQ Sbjct: 79 ETNLTLAWMPGDSGQ 93 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.130 0.366 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,576 Number of Sequences: 514 Number of extensions: 4449 Number of successful extensions: 33 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 24 length of query: 186 length of database: 206,069 effective HSP length: 67 effective length of query: 119 effective length of database: 171,631 effective search space: 20424089 effective search space used: 20424089 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 34 (17.7 bits)