BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:96900|NCBI_annot:ORF023|genbank:acc:YP_2 40163;genbank:gi:66395830;genbank:GeneID:5133241 (180 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8742|lcl|protein:vir:96900 Length: 180 # NCBI annotation: ORF... 366 e-104 gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF... 296 9e-83 gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: ma... 296 9e-83 gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF... 296 9e-83 gi|5903|lcl|protein:vir:107114 Length: 179 # NCBI annotation: hy... 180 9e-48 gi|10494|lcl|protein:vir:105312 Length: 179 # NCBI annotation: c... 180 9e-48 gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: OR... 170 1e-44 gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF... 170 1e-44 gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF... 170 1e-44 gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: sim... 170 1e-44 gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF... 170 1e-44 gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF... 170 1e-44 gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF... 170 1e-44 gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF... 166 1e-43 gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF... 154 6e-40 gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: maj... 54 8e-10 gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hyp... 42 3e-06 gi|15364|lcl|protein:vir:9932 Length: 199 # NCBI annotation: hyp... 32 0.003 gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unkn... 31 0.010 gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: maj... 31 0.010 gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: maj... 24 1.3 gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: put... 22 3.4 gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: puta... 22 6.8 gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: put... 22 7.0 >gi|8742|lcl|protein:vir:96900 Length: 180 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240163;genbank:gi:66395830;genbank:GeneID :5133241 Length = 180 Score = 366 bits (940), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK 60 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK Sbjct: 1 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK 60 Query: 61 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED 120 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED Sbjct: 61 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED 120 Query: 121 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSDLGV 180 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSDLGV Sbjct: 121 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSDLGV 180 >gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF020 # Family: family:all:913 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240241;genbank:gi:66395905;genbank:GeneID :5133297 Length = 185 Score = 296 bits (758), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 158/177 (89%) Query: 1 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK 60 MAQK+YLAV+RPAE+ LD V++LLLADLQEGG TIENDLAEI+RGGKTDYS N+ SE FK Sbjct: 1 MAQKNYLAVVRPAETDLDPVESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMSESFK 60 Query: 61 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED 120 +TIGNVPGD GIEAVK A +TGGQ+RIWLYERNKR DGK+HG+FGY V ESFEMSFDDE Sbjct: 61 LTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSFDDES 120 Query: 121 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSD 177 +KIEL+LK+KWNTAEG EDNLP EWFEAAGAPTVEYE FGE VGTFE ++KASV SD Sbjct: 121 DKIELSLKVKWNTAEGAEDNLPKEWFEAAGAPTVEYEKFGEKVGTFENQKKASVVSD 177 >gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: major tail protein # Family: family:all:913 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004381;genbank:gi:122891836;genbank:Ge neID:4712383 Length = 185 Score = 296 bits (758), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 158/177 (89%) Query: 1 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK 60 MAQK+YLAV+RPAE+ LD V++LLLADLQEGG TIENDLAEI+RGGKTDYS N+ SE FK Sbjct: 1 MAQKNYLAVVRPAETDLDPVESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMSESFK 60 Query: 61 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED 120 +TIGNVPGD GIEAVK A +TGGQ+RIWLYERNKR DGK+HG+FGY V ESFEMSFDDE Sbjct: 61 LTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSFDDES 120 Query: 121 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSD 177 +KIEL+LK+KWNTAEG EDNLP EWFEAAGAPTVEYE FGE VGTFE ++KASV SD Sbjct: 121 DKIELSLKVKWNTAEGAEDNLPKEWFEAAGAPTVEYEKFGEKVGTFENQKKASVVSD 177 >gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240318;genbank:gi:66395985;genbank:GeneID :5133388 Length = 185 Score = 296 bits (758), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 158/177 (89%) Query: 1 MAQKSYLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFK 60 MAQK+YLAV+RPAE+ LD V++LLLADLQEGG TIENDLAEI+RGGKTDYS N+ SE FK Sbjct: 1 MAQKNYLAVVRPAETDLDPVESLLLADLQEGGHTIENDLAEIVRGGKTDYSPNAMSESFK 60 Query: 61 VTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDED 120 +TIGNVPGD GIEAVK A +TGGQ+RIWLYERNKR DGK+HG+FGY V ESFEMSFDDE Sbjct: 61 LTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHGMFGYVVPESFEMSFDDES 120 Query: 121 NKIELTLKIKWNTAEGTEDNLPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASVSSD 177 +KIEL+LK+KWNTAEG EDNLP EWFEAAGAPTVEYE FGE VGTFE ++KASV SD Sbjct: 121 DKIELSLKVKWNTAEGAEDNLPKEWFEAAGAPTVEYEKFGEKVGTFENQKKASVVSD 177 >gi|5903|lcl|protein:vir:107114 Length: 179 # NCBI annotation: hypothetical protein # Family: family:all:913 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950612;genbank:gi:119953692;genbank:GeneI D:4643123 Length = 179 Score = 180 bits (456), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 6/174 (3%) Query: 1 MAQKSYLAVIRPAE----SKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+A ++ A+ SKL + DA+LLA L EGG TI NDLAE+I GGK DY NS Sbjct: 1 MAQNKYIAALQIADKDLASKLKEEDAILLASLAEGGHTISNDLAEMITGGKKDYGRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G EA+K++ K Q+R+W++E KR DGK+HG F Y +VE E SF Sbjct: 61 EEIKLTVDRVPGDKGQEALKESVKNFKQLRLWIWEVKKR-DGKHHGTFAYVIVEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEK 169 DDED+KIE+T K+K+N+A+G+ D+LPPEW +A APTVE+E G ++E + Sbjct: 120 DDEDDKIEITAKVKFNSADGSVDSLPPEWLNPSAAAPTVEWEDMGAYTDSYENR 173 >gi|10494|lcl|protein:vir:105312 Length: 179 # NCBI annotation: conserved phage protein # Family: family:all:913 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950675;genbank:gi:119967845;genbank:GeneI D:4643191 Length = 179 Score = 180 bits (456), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 6/174 (3%) Query: 1 MAQKSYLAVIRPAE----SKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+A ++ A+ SKL + DA+LLA L EGG TI NDLAE+I GGK DY NS Sbjct: 1 MAQNKYIAALQIADKDLASKLKEEDAILLASLAEGGHTISNDLAEMITGGKKDYGRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G EA+K++ K Q+R+W++E KR DGK+HG F Y +VE E SF Sbjct: 61 EEIKLTVDRVPGDKGQEALKESVKNFKQLRLWIWEVKKR-DGKHHGTFAYVIVEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEK 169 DDED+KIE+T K+K+N+A+G+ D+LPPEW +A APTVE+E G ++E + Sbjct: 120 DDEDDKIEITAKVKFNSADGSVDSLPPEWLNPSAAAPTVEWEDMGAYTDSYENR 173 >gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240756;genbank:gi:66396432;genbank:GeneID :5133776 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF022 # Family: family:all:913 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240466;genbank:gi:66396135;genbank:GeneID :5133504 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240618;genbank:gi:66396288;genbank:GeneID :5133680 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: similar to phage Spp1 gp17.1 # Family: family:all:913 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510944;genbank:gi:17426278;genbank:GeneID :927369 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240683;genbank:gi:66396358;genbank:GeneID :5133751 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240543;genbank:gi:66396214;genbank:GeneID :5133573 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240392;genbank:gi:66396063;genbank:GeneID :5133471 Length = 186 Score = 170 bits (430), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR DGK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-DGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQKASV- 174 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKTTA 179 Query: 175 -SSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240830;genbank:gi:66394694;genbank:GeneID :5133902 Length = 186 Score = 166 bits (421), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 124/187 (66%), Gaps = 8/187 (4%) Query: 1 MAQKSYLAVIRPAESKLDKV----DALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTS 56 MAQ Y+ ++ A+ L K +A LL L EGG TI NDLAEII+GGK DYS NS Sbjct: 1 MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLAEIIQGGKKDYSRNSVE 60 Query: 57 EEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSF 116 EE K+T+ VPGD G A+K++ K Q+R+W++E KR +GK+HGVF Y V+E E SF Sbjct: 61 EEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKR-EGKHHGVFAYVVIEEHEWSF 119 Query: 117 DDEDNKIELTLKIKWNTAEGTEDNLPPEWFE-AAGAPTVEYEHFGENVGTFEEKQK--AS 173 DDEDNKIE+T K+K+N+A+GT ++LP EW +A AP VE+E ++E + K + Sbjct: 120 DDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEFEDMNAYEDSYENRTKKITA 179 Query: 174 VSSDLGV 180 SSDL + Sbjct: 180 GSSDLSM 186 >gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240085;genbank:gi:66395751;genbank:GeneID :5133137 Length = 187 Score = 154 bits (389), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 83/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 6 YLAVIRPAESKLDKVDALLLADLQEGGWTIENDLAEIIRGGKTDYSSNSTSEEFKVTIGN 65 Y+AV+ P + L V LL++DLQEG I +L+E I GKTDYS S +EE +T G Sbjct: 5 YIAVVEPTNNTLG-VMGLLVSDLQEGETKISAELSEKIVAGKTDYSYQSVAEELNLTFGR 63 Query: 66 VPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFEMSFDDEDNKIEL 125 +PGD G + K+A K QV++WL E+ KR DG YH VFGYAVVE + SFDDE++ IE+ Sbjct: 64 IPGDKGQDQFKQAIKDRKQVKVWLIEKKKRTDG-YHAVFGYAVVEEYGNSFDDEEDTIEV 122 Query: 126 TLKIKWNTAEGTEDNLPPEWFEAAGA-PTVEYEHFGENVGTFEEKQKAS 173 T+K+K+NTA+G LP W +A+ A TVE+E GE G EE++ S Sbjct: 123 TVKVKFNTADGVFSELPQSWLDASVAGTTVEFEKPGEYTGDLEERESTS 171 >gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: major tail protein # Family: family:all:1095 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223895;genbank:gi:62327107;genbank:GeneID :5075521 Length = 199 Score = 54.3 bits (129), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 22 ALLLADLQEGGWTIEND-LAEIIRGGKTDYSSNSTSEEFKVTIGNVPGDPGIEAVKKAAK 80 A+L A + G +IE D L E + G+ + ++ + +VT VPGD +A+ KA Sbjct: 36 AILPAHQESGDTSIEGDSLDEQTKMGRI-VAPSTNEDSIEVTSYMVPGDEATDAIIKAKH 94 Query: 81 TGGQVRIWLYERNKR------KDGKYHGVFGYAVVESFEMSFDDEDNKIELTLKIKWNTA 134 G Q+++W +KR Y +FGY +V+S ++S +D ++I+ T+ I Sbjct: 95 DGKQIKVWRVIVDKRLAVTEDDHSAYPAMFGYGIVDSADISDEDSFSEIDWTINILGKLV 154 Query: 135 EGTEDNLPPEWFEAAGAPTV-EYEHFGENVGTFEEKQKA 172 +GT P E + +YE GE G F + A Sbjct: 155 DGT---FPLTDAEVQSLQALYDYERPGEKTGEFADTSVA 190 >gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690680;genbank:geneid:6329148;genbank:gi: 22855074;interpro:IPR009341;interpro:IPR011855;uniprot:O 48449;genbank:GeneID:955320 Length = 177 Score = 42.4 bits (98), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 54 STSEEFKVTIGNVPGDPGIEAVKKAAKTGGQVRIWLYERNKRKDGKYHGVFGYAVVESFE 113 S ++ +VT GD G +A++ A + G Q++ W + K ++ KY FG+A +ES E Sbjct: 58 SVADSGEVTYYGKRGDAGQKAIEDAYQNGKQIKFWRVDTVKNENDKYDAQFGFAYIESRE 117 Query: 114 MSFDDEDN-KIELTLKIKWNTAEGTEDNLPPE 144 S E +I ++L++ G D LP E Sbjct: 118 YSDGVEGAVEISISLQVIGELKNGEIDTLPEE 149 >gi|15364|lcl|protein:vir:9932 Length: 199 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795694;genbank:gi:28876454;genbank:GeneID :1258025 Length = 199 Score = 32.3 bits (72), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 13/61 (21%) Query: 66 VPGDPGIEAVKKAAKTGGQVRIW-------------LYERNKRKDGKYHGVFGYAVVESF 112 VP DP + +++A KTG ++IW + E K Y FGYA ++ Sbjct: 82 VPTDPSVAVIEEAKKTGKSIKIWEVIADESVKEQIQIPESTGPKKDVYPAKFGYAKIDEI 141 Query: 113 E 113 E Sbjct: 142 E 142 >gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unknown # Family: family:all:464 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108722;genbank:gi:13487844;genbank:GeneID :920880 Length = 165 Score = 30.8 bits (68), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 68 GDPGIEAVKKAAKTGGQVRIWLYER-NKRKDGKYHGVFGYAVVESFEMSFDDEDNKIELT 126 GDP ++ + KA G + +W ++ K DGKY + A + SF + ED +EL+ Sbjct: 73 GDPHLDEMDKAFDDGEIIEVWEIDKAEKGSDGKYKAKYLRAYLTSFSYEPNSED-ALELS 131 Query: 127 LKI 129 L+ Sbjct: 132 LEF 134 >gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663681;genbank:gi:21716118;genbank:GeneID :951213 Length = 165 Score = 30.8 bits (68), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 68 GDPGIEAVKKAAKTGGQVRIWLYER-NKRKDGKYHGVFGYAVVESFEMSFDDEDNKIELT 126 GDP ++ + KA G + +W ++ K DGKY + A + SF + ED +EL+ Sbjct: 73 GDPHLDEMDKAFDDGEIIEVWEIDKAEKGSDGKYKAKYLRAYLTSFSYEPNSED-ALELS 131 Query: 127 LKI 129 L+ Sbjct: 132 LEF 134 >gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: major structural protein # Family: family:all:3249 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044957;genbank:gi:9629664;genbank:GeneID: 1261264 Length = 301 Score = 23.9 bits (50), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%) Query: 90 YERNKRKDGKYHGVF--GYAVV------ESFEMSFDDEDNKIELTLKIKWNTAEGTEDNL 141 Y RK K G F GY VV + E + + E + ++ I+W A D+ Sbjct: 115 YLIKGRKRDKVTGEFVDGYRVVVYPHLTPTAEATKESETDSVDGVDPIQWTLAVQATDS- 173 Query: 142 PPEWFEAAG--APTVEYEHFGENVGTFEEKQKASV 174 + + G P +EYE +GE F +K ++ + Sbjct: 174 --DIYSNGGKKVPAIEYEIWGEQAKDFAKKMESGL 206 >gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: putative capsid # Family: family:all:3249 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762524;genbank:gi:115304223;genbank:GeneI D:5141215 Length = 301 Score = 22.3 bits (46), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%) Query: 90 YERNKRKDGKYHGVF--GYAVV------ESFEMSFDDEDNKIELTLKIKWNTAEGTEDNL 141 Y RK K G F GY VV + E + + E + ++ I+W A D+ Sbjct: 115 YLIKGRKRDKVTGEFVDGYRVVVYPHLTPTAEATKESETDSVDGVDPIQWTLAVQATDS- 173 Query: 142 PPEWFEAAG--APTVEYEHFGENVGTFEEKQKASV 174 + + G P +EYE +GE F +K ++ + Sbjct: 174 --DIYLNGGKKVPAIEYEIWGEQAKDFVKKMESGL 206 >gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: putative major structural protein # Family: family:all:3249 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047126;genbank:gi:9630579;genbank:GeneID: 1261772 Length = 301 Score = 21.6 bits (44), Expect = 6.8, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Query: 90 YERNKRKDGKYHGVF--GYAVV------ESFEMSFDDEDNKIELTLKIKWNTA-EGTEDN 140 Y RK K G F GY VV + E + + E + ++ I+W A + T+ + Sbjct: 115 YLIKGRKRDKVTGEFIDGYRVVVYPNLRPTAEATKESETDSVDGVDPIQWTLAVQATDSD 174 Query: 141 LPPEWFEAAGAPTVEYEHFGENVGTFEEKQKASV 174 + + P +EYE +GE F +K ++ + Sbjct: 175 IYLNGNKKV--PAIEYEIWGEQAKDFAKKMESGL 206 >gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: putative structural protein # Family: family:all:3249 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764271;genbank:gi:115315584;genbank:GeneI D:5141538 Length = 301 Score = 21.6 bits (44), Expect = 7.0, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 152 PTVEYEHFGENVGTFEEKQKASV 174 P +EYE +GE F +K ++ + Sbjct: 184 PAIEYEIWGEQAKDFAKKMESGL 206 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.310 0.131 0.379 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,800 Number of Sequences: 514 Number of extensions: 4254 Number of successful extensions: 43 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 26 length of query: 180 length of database: 206,069 effective HSP length: 66 effective length of query: 114 effective length of database: 172,145 effective search space: 19624530 effective search space used: 19624530 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 34 (17.7 bits)