BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:107805|NCBI_annot:hypothetical protein predicted by GeneMark|genbank:acc:NP_996635;genbank:gi:45580769;genbank:GeneID:2767 881 (533 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10218|lcl|protein:vir:107805 Length: 533 # NCBI annotation: h... 1080 0.0 gi|6515|lcl|protein:vir:98503 Length: 533 # NCBI annotation: hyp... 1080 0.0 gi|4516|lcl|protein:vir:107432 Length: 533 # NCBI annotation: Bb... 1080 0.0 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 113 6e-27 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 72 2e-14 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 72 2e-14 gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: te... 44 4e-06 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 44 5e-06 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 38 2e-04 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 36 0.001 gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: put... 34 0.003 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 34 0.003 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 30 0.056 gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: ter... 29 0.11 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 28 0.28 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 23 5.8 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 23 8.4 >gi|10218|lcl|protein:vir:107805 Length: 533 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:144 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996635;genbank:gi:45580769;genbank:GeneID :2767881 Length = 533 Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/533 (100%), Positives = 533/533 (100%) Query: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK Sbjct: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 Query: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA Sbjct: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 Query: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS Sbjct: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 Query: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV Sbjct: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 Query: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG Sbjct: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 Query: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF Sbjct: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 Query: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE Sbjct: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 Query: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL Sbjct: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 Query: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM Sbjct: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 >gi|6515|lcl|protein:vir:98503 Length: 533 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:144 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996587;genbank:gi:45569518;genbank:GeneID :2767831 Length = 533 Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/533 (100%), Positives = 533/533 (100%) Query: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK Sbjct: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 Query: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA Sbjct: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 Query: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS Sbjct: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 Query: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV Sbjct: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 Query: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG Sbjct: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 Query: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF Sbjct: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 Query: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE Sbjct: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 Query: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL Sbjct: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 Query: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM Sbjct: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 >gi|4516|lcl|protein:vir:107432 Length: 533 # NCBI annotation: Bbp25 # Family: family:all:144 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958694;genbank:gi:41179386;genbank:GeneID :2717226 Length = 533 Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/533 (100%), Positives = 533/533 (100%) Query: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK Sbjct: 1 MSSVAEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGK 60 Query: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA Sbjct: 61 TDLIAGLTLTKHERALIVRREKAQTEGFVQRMTEIMGGTDGYNSQKGFWRLPGGRLCELA 120 Query: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS Sbjct: 121 GLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTS 180 Query: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV Sbjct: 181 EGRWVIDFFAPWLDKKHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLV 240 Query: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG Sbjct: 241 GGRVEYDFDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYG 300 Query: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF Sbjct: 301 DFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWF 360 Query: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE Sbjct: 361 DVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAE 420 Query: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL Sbjct: 421 AARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATL 480 Query: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM Sbjct: 481 KVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLDYDPYARM 533 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 113 bits (282), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 19/217 (8%) Query: 298 LYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRL---APMDSL--GVDVARGGRDNTIL 352 + G+F+A ED VIP AW+EAA RW DR +P L GVDV RGG D T+L Sbjct: 258 VLGEFHASDED---SVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGRGG-DETVL 313 Query: 353 ARRHAMWFDVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQ 412 A R W T +DT +A + + R+ I +DVIG+GA +D L + + Sbjct: 314 AARDG-WAVTLETNRRRDT-----MATVGLIQAREGRAI-IDVIGLGAGVFDRLRELGTR 366 Query: 413 VVGVNVAEAARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPT 472 + + A D+SG+ F N RS +W +RE LDP + +ALPPD +++DLT P Sbjct: 367 PLAYTGSAGATVRDRSGKFGFTNTRSAAYWNLRELLDPAFDPVLALPPDDLMISDLTTPH 426 Query: 473 WSLSGAT---LKVASREDIIEKIGRSPDFGSAYVLAL 506 W ++ +KV ++ ++E++GRSPD G A ++L Sbjct: 427 WEVTTGVPPKIKVEPKDKVVERLGRSPDRGDAIAMSL 463 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 11/160 (6%) Query: 7 IRRLMTYMTPAELAEVDALLATAPPWLPLP--GPQTAAYNSDADIIGYGGAAGGGKT-DL 63 IR ++ ++ EL + + P++P+ Q SD + YGGAAGGGK+ L Sbjct: 30 IRSILQGLSDRELKLFYSTI-ILNPYIPVNPFHKQIKFLLSDEREVLYGGAAGGGKSVAL 88 Query: 64 IAGLTLTKHER---ALIVRR---EKAQTEGFVQRMTEIMGGTDG-YNSQKGFWRLPGGRL 116 + G H ALI+RR E +Q G + + +GGTD +N QK W P G Sbjct: 89 LMGALQYVHYSDYAALILRRTYPELSQEGGLIDMANDWLGGTDAEWNEQKKRWTFPSGAA 148 Query: 117 CELAGLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVM 156 + +++ D R+QG + AFDE+TE E Q RF+ Sbjct: 149 LQFGHMEHEKDRYRYQGSSYHYIAFDELTEFLESQYRFMF 188 Score = 29.6 bits (65), Expect = 0.082, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 263 SRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIE 307 +TFIP+ +NPY Y L L R Q+ GD++ I+ Sbjct: 225 EKTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKEGDWDVSIQ 269 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 11/160 (6%) Query: 7 IRRLMTYMTPAELAEVDALLATAPPWLPLP--GPQTAAYNSDADIIGYGGAAGGGKT-DL 63 IR ++ ++ EL + + P++P+ Q SD + YGGAAGGGK+ L Sbjct: 30 IRSILQGLSDRELKLFYSTI-ILNPYIPVNPFHKQIKFLLSDEREVLYGGAAGGGKSVAL 88 Query: 64 IAGLTLTKHER---ALIVRR---EKAQTEGFVQRMTEIMGGTDG-YNSQKGFWRLPGGRL 116 + G H ALI+RR E +Q G + + +GGTD +N QK W P G Sbjct: 89 LMGALQYVHYSDYAALILRRTYPELSQEGGLIDMANDWLGGTDAEWNEQKKRWTFPSGAA 148 Query: 117 CELAGLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVM 156 + +++ D R+QG + AFDE+TE E Q RF+ Sbjct: 149 LQFGHMEHEKDRYRYQGSSYHYIAFDELTEFMETQYRFMF 188 Score = 27.7 bits (60), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 263 SRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEA 321 +TFIP+ +NPY Y L L R Q+ GD++ ++ V W E Sbjct: 225 EKTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKDGDWDVTLQGG---VFKREWFEV 280 >gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112491;genbank:gi:53793591;uniprot:Q5ZGG2 ;genbank:GeneID:3101748 Length = 432 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 33/256 (12%) Query: 264 RTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQ 323 + FI A TDNP+ + + YL +L SL E + ++ YG N ++DP ++I ++ Sbjct: 186 KKFIQALPTDNPH-LPASYLTSLLSLDENSKQRLYYG--NWEYDNDPAKLIDYEKIQNC- 241 Query: 324 ARWKRPDRLAPMDSLGV--DVARGGRDNTILARRHAMW--FDVPLTYP---GKDTPDGPT 376 + P + + D+AR G D ++ +W F V + T Sbjct: 242 ----FTNTFIPFGEMYISADIARFGSDKMVIC----VWSGFRVVEIFSMAKSSITEIAEA 293 Query: 377 VAGLAIAALRDHAVIHLDVIGVGASPYDFLAQAKQQVVGVNVAEAARGTDKSGRLRFFNL 436 V GL+I H V +VI + +N + A ++ +++ NL Sbjct: 294 VRGLSIK----HKVPLSNVICDEDGVGGGVVDVLGCTGFINNSRAMEVDNQV--VQYQNL 347 Query: 437 RSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSL------SGATLKVASREDIIE 490 +++ ++++ E + +NN I D + ++T + S L++ S++ + + Sbjct: 348 KTQCYYKLAEVI-QSNNLYIH-SEDATVNDEITKELEQVKRDKIDSDGKLQLISKDKVKQ 405 Query: 491 KIGRSPDFGSAYVLAL 506 IGRSPD+ A ++ + Sbjct: 406 AIGRSPDYSDALMMRM 421 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 43.5 bits (101), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 11/214 (5%) Query: 5 AEIRRLMTYMTPAELAEVDALLATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGKTDLI 64 +I L+ Y TP ++ + L+ P PG Q N++AD++ YGGAAG GKT + Sbjct: 45 TQILTLLRY-TPDQVRLIFKLMTDKNYVAPQPGSQEVFLNTNADLVLYGGAAGAGKTAAL 103 Query: 65 AGLTLTKHE----RALIVRREKAQTEGFVQRMTEIMGGTDGY--NSQKGFWRLPGGRLCE 118 +L E A+ RR Q +G + + + G G + QK P G + Sbjct: 104 LMDSLRFIEDPNYNAVYFRRNTTQLQGGLWPAAKKLFGKFGGIPHEQKMTITFPSGATIK 163 Query: 119 LAGLDNPGDERRWQGRPHDLKAFDEVTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPT 178 L+ QG + FDE T Q+ ++ R+ G S + ++ NP Sbjct: 164 FTYLELEKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGD-SYMKISMNP-- 220 Query: 179 TSEGRWVIDFFAPWLDKKHPLYPTAPGALRWVAM 212 ++ D+ P+LD++ P G +RW M Sbjct: 221 -DRDHFIYDWVEPFLDEEGYPDPEKCGRIRWYVM 253 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/324 (25%), Positives = 118/324 (36%), Gaps = 72/324 (22%) Query: 34 PLPGPQTAAYNSDADIIGYGGAAGGGK--TDLI-----AGLTLTKHERALIVRREKAQTE 86 PLPG QT A S A Y GA G GK T L+ G K R +I E Sbjct: 22 PLPGSQTIALCSMAAHTLYEGARGPGKTLTQLMRFYRNVGKGYGKFWRGVIFDLEFDHLG 81 Query: 87 GFVQRMTEIMG-------GTDGYNSQKGF-WRLPGGRLCELAGLDNPGDERRWQGRPHDL 138 G V + G G Y S + W P G + D + G + Sbjct: 82 GLVAESKKWFGDNGKLKDGGKFYESTSAYKWVWPTGEELLFRHVKKLSDYEGFHGHEYPF 141 Query: 139 KAFDEVTEQREQQV--RFVMGWNRTNKPGQRSRVLMTFNPPTTS-----EGRWVIDFFAP 191 ++E+T+ + +F M NR TF+P + GR++ P Sbjct: 142 IGWNELTKHPSGDLYDKF-MSVNRC-----------TFDPIKDTPKDPKTGRYLTPNGEP 189 Query: 192 WLDKKHPLY----PTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLVGGRVEYD 247 K ++ P+ PG WV ++ AP V R Sbjct: 190 LPPVKCEVFSTTNPSGPGH-NWVKR-----------------RFITIAPRGTVVRREIQI 231 Query: 248 FDPADYNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEP-LRSQMLYGDFNA-- 304 ++PA E + S+ I +NP Y+ + Y+ L+S+ EP LR LYGD++ Sbjct: 232 YNPATEKEETHVI--SQIAIFGSYKENP-YLPASYIAELESIKEPNLRKAWLYGDWDVTA 288 Query: 305 -GIEDDPWQ---------VIPTAW 318 G DD WQ VIP +W Sbjct: 289 GGAIDDLWQSHIHVVPRFVIPPSW 312 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 108/301 (35%), Gaps = 52/301 (17%) Query: 32 WLPLPGPQTAAYNSDADIIGYGGAAGGGKTDL-------IAGLTLTKHERALIVRREKAQ 84 W PLPG QTAA + Y G G GKTD GL + R +I RE Sbjct: 13 WQPLPGSQTAAITYPGHHLLYEGTRGPGKTDAQLMKFRRYVGLGYGRFWRGIIFDREYKN 72 Query: 85 TEGFV---QRMTEIMGGTDGYNSQKG--FWRLPGGRLCELAGLDNPGDERRWQGRPHDLK 139 + V QR + + + K W P G + D + G Sbjct: 73 LDDLVSKSQRWFPLFEDGAKFKASKSDYRWVWPTGEELLFRQIKKSTDYWNYHG------ 126 Query: 140 AFDEVTEQREQQVRFVMGWNRTNK--PGQRSRVLMTFNPPTTSEGRWVIDFFAPWLDK-- 195 Q+ F+ GWN +K +M+ N + W P++D+ Sbjct: 127 ----------QEFPFI-GWNELSKYPTPDLYESMMSCNRSSFRPEDW------PYIDEHG 169 Query: 196 KHPLYPTAPGALRWVAMLPDGNGGSRDTWFDSDGNPLSSAPFVLVGGRVEYDFDPADYNP 255 L P P + + P G G W + AP +V + F+P Sbjct: 170 NQCLLPEMP-LMVFSTTNPYGPG---HNWVKRQF--IDIAPPGVVVKTTKDVFNPRTQKR 223 Query: 256 EDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEP-LRSQMLYGDFNA---GIEDDPW 311 E + + + R F +N Y+ Y+ L+S+ +P R L+GD+N G DD W Sbjct: 224 EPVTKTQVRLF--GSYKEN-IYLTPEYVAELESIKDPNKRKAWLHGDWNVVAGGAIDDLW 280 Query: 312 Q 312 + Sbjct: 281 R 281 >gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512256;genbank:gi:89152423;genbank:GeneID :3952979 Length = 491 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 89/230 (38%), Gaps = 27/230 (11%) Query: 312 QVIPTAWVEAAQARWKRPDRLAPMDSL-GVDVARGGRDNTILARRHAMWFDVPLTYPGKD 370 Q IPT + A R ++A + GVD A G D+ ++ R + V T G Sbjct: 279 QFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWT--GNK 336 Query: 371 TPDGPTVAGLAIAALRDHAVIHLDVIGVG-----ASPYDFLAQAKQQVVGVNVAEAARGT 425 T D +A IA D I G S D + Q V + + Sbjct: 337 TTDDLIMAK-RIADFEDQYQADAVFIDFGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML 395 Query: 426 DKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLS-GATLKVAS 484 +K G + FN + W R+ LD D DL+ + + + + Sbjct: 396 NKRGEM--FN-SCKTWLRLGGMLD-----------DQETADDLSTAEYKVRVDGKIVIEP 441 Query: 485 REDIIEKIGRSPDFGSAYVLAL-MDTPKRAAV--EALGQARSRLDYDPYA 531 +EDI E++GRSP G A +L KR + + Q ++ DYDPYA Sbjct: 442 KEDIKERLGRSPGKGDALLLTFAFPVSKRLRIPGQQNQQGKAITDYDPYA 491 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 14/158 (8%) Query: 32 WLPLPGPQTAAYNSDADI-IGYGGAAGGGKTDLI-------AGLTLTKHERALIVRREKA 83 W P G Q A + + Y G G GKTD + G R ++ R+ Sbjct: 48 WCPQYGSQLAFLMAHPIFEVLYEGTRGPGKTDCLLMDFLQHVGKGYGSEWRGILFRQTYP 107 Query: 84 QTEGFVQRMTE----IMGGTDGYNSQKGFWRLPGGRLCELAGLDNPGDERRWQGRPHDLK 139 Q + + + I G YN + W P G L + +P D + G + Sbjct: 108 QLSDVINKTNKWFKRIFPGAK-YNKVEHKWTFPDGEELLLRHMKSPEDYWNYHGHAYPWI 166 Query: 140 AFDEVTEQREQQVRFV-MGWNRTNKPGQRSRVLMTFNP 176 ++E+ + + V M R+ KPG T NP Sbjct: 167 GWEELCNWADDKCYTVMMSCCRSTKPGMPRCYRATTNP 204 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 30.4 bits (67), Expect = 0.056, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 14/132 (10%) Query: 38 PQTAAYNSDADIIGYGGAAGGGKTDL-----------IAGLTLTKHERAL--IVRREKAQ 84 PQ A + A I YGGAAGGGK+ L I GL R ++ Sbjct: 10 PQQRALITPAREILYGGAAGGGKSYLLRVASIVYSLEIPGLITYLFRRTFKEVLSNHVYT 69 Query: 85 TEGFVQRMTEIMGGTD-GYNSQKGFWRLPGGRLCELAGLDNPGDERRWQGRPHDLKAFDE 143 G+++ M ++ D Y+ + G +LA D QG DE Sbjct: 70 PGGYLEMMKGLIDAGDVVYSKSDNSFTFYNGSRIQLAHSQFENDIYTHQGAQIGFLIIDE 129 Query: 144 VTEQREQQVRFV 155 T +RF+ Sbjct: 130 ATHFTPPMIRFI 141 >gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848210;genbank:gi:30387381;genbank:GeneID :2641874 Length = 491 Score = 29.3 bits (64), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 16/105 (15%) Query: 430 RLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLS-GATLKVASREDI 488 R FN + W ++ ALD D DL+A + + + + +EDI Sbjct: 398 RGEMFN-SCKTWLKLGGALD-----------DQETADDLSAAEYKVRVDGKIVIEPKEDI 445 Query: 489 IEKIGRSPDFGSAYVLAL---MDTPKRAAVEALGQARSRLDYDPY 530 E++GRSP G A +L + R + Q ++ +YDP+ Sbjct: 446 KERLGRSPGKGDALLLTFAFPVTKHLRIPGQESQQGKAVTEYDPW 490 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 195 KKHPLYPTAPGALRWVAMLPDGNGGSRDTWF 225 K PL G RW A +GNG + +TWF Sbjct: 150 KFSPLTNLKKGKKRWEAKAEEGNGINAETWF 180 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 23.5 bits (49), Expect = 5.8, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 116 LCELAGLDNPGDERRWQGRPHDLKAFDEVTEQREQQ 151 +CEL D+P DE+ W L ++E E Q Sbjct: 270 ICELEDEDDPFDEKAWIKANPVLCTYEEGIESMRQN 305 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 23.1 bits (48), Expect = 8.4, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 19/38 (50%) Query: 211 AMLPDGNGGSRDTWFDSDGNPLSSAPFVLVGGRVEYDF 248 A+LPDG G + + D D + + + + L YD+ Sbjct: 401 ALLPDGVGNRKHGFPDKDNHTIDTTRYALEEVIANYDW 438 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.137 0.428 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,165 Number of Sequences: 514 Number of extensions: 14131 Number of successful extensions: 55 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 21 length of query: 533 length of database: 206,069 effective HSP length: 76 effective length of query: 457 effective length of database: 167,005 effective search space: 76321285 effective search space used: 76321285 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)