BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:7995|NCBI_annot:gp11|genbank:acc:NP_8173 49;genbank:gi:29565777;genbank:GeneID:1259036 (269 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp1... 555 e-160 gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp... 552 e-159 gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp... 552 e-159 gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp4... 241 7e-66 gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp1... 174 9e-46 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 54 2e-09 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 44 1e-06 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 44 1e-06 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 23 4.7 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 23 5.3 gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp... 22 5.9 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 22 6.1 gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tai... 22 7.2 gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp2... 22 7.6 gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hyp... 22 9.1 >gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817349;genbank:gi:29565777;genbank:GeneID :1259036 Length = 269 Score = 555 bits (1430), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/269 (100%), Positives = 269/269 (100%) Query: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 61 DGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 DGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV Sbjct: 61 DGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 Query: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA Sbjct: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 Query: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD Sbjct: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 Query: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 PAGTIALVPGYFYVWMGGPGWAEQYSDGS Sbjct: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 >gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655772;genbank:gi:109522095;genbank:GeneI D:4157635 Length = 269 Score = 552 bits (1423), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/269 (99%), Positives = 268/269 (99%) Query: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 61 DGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 DGKLRDDLFIRRKVNGKYEYNT PNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV Sbjct: 61 DGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 Query: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA Sbjct: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 Query: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD Sbjct: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 Query: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 PAGTIALVPGYFYVWMGGPGWAEQYSDGS Sbjct: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 >gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655007;genbank:gi:109392197;genbank:GeneI D:4157232 Length = 269 Score = 552 bits (1423), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/269 (99%), Positives = 268/269 (99%) Query: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 61 DGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 DGKLRDDLFIRRKVNGKYEYNT PNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV Sbjct: 61 DGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPV 120 Query: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA Sbjct: 121 DSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSA 180 Query: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD Sbjct: 181 EYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRPD 240 Query: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 PAGTIALVPGYFYVWMGGPGWAEQYSDGS Sbjct: 241 PAGTIALVPGYFYVWMGGPGWAEQYSDGS 269 >gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp49 # Family: family:all:1912 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817900;genbank:gi:29566333;genbank:GeneID :1259528 Length = 271 Score = 241 bits (615), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 125/270 (46%), Positives = 168/270 (62%), Gaps = 3/270 (1%) Query: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFED-DCVTVKWSPFA 59 M P TGT W AGGF D+ F RGGL A+ IRDNRG T++SP+ + T WSPFA Sbjct: 1 MAIPSTGTSWRAGGFGDVDSRFNNRGGLAAILIRDNRGPDTNISPWASGNPPTRNWSPFA 60 Query: 60 QDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFP 119 +DG RDDLF V+G + N PNEG+ IG EDGG ER PD+++D+ M+LQS P Sbjct: 61 EDGNPRDDLFAHILVDGDWVTNPEPNEGFHLIGALTEDGGPERAPDISNDNQMILQSNMP 120 Query: 120 VDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADS 179 DS++T +S S+ F + T PL+ RL L L D+ GN +V PGT ++G G +D + Sbjct: 121 FDSDLTSESLSINFTGVETVKPLMKRLRMNLALSDSDGNSIVEDPGTENFGIGKPVDNEG 180 Query: 180 AEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRP 239 EYQ++L++ARR G F+Y AEGY KL+D + +RSKTDPD L Y VLP+ YF+ Sbjct: 181 PEYQIILMFARRKRGKFLYTAEGYSLCKLNDIGAFRRSKTDPDAGSLGYMVLPDPYFVGK 240 Query: 240 DPAG--TIALVPGYFYVWMGGPGWAEQYSD 267 DP + L+P Y++ W+ G W + D Sbjct: 241 DPNNPDSDELIPLYYHEWVSGESWTDIKGD 270 >gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp12 # Family: family:all:1912 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817689;genbank:gi:29566120;genbank:GeneID :1259314 Length = 265 Score = 174 bits (442), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 108/276 (39%), Positives = 150/276 (54%), Gaps = 18/276 (6%) Query: 1 MTQPLTGTDWSAGGFTDIHKPFI--ERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPF 58 MTQPLTGT +AGG+T + R GL AV RD G +T++SP + TV+WSP Sbjct: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANG-TVRWSPL 59 Query: 59 AQDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKF 118 AQDG+LRDDLF + +G + NT PNEGW+ G E G P + +DD M+ QS + Sbjct: 60 AQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNW 119 Query: 119 PVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDAD 178 P +S++T++ F AL P I RL + LPL D GNPLV LPG D P +DA+ Sbjct: 120 PFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQP-VDAE 178 Query: 179 SAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMR 238 Q LL R+ G ++Y + Y L+++ ++ K A+LT+K P+ YFM Sbjct: 179 KIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRG-TAAELTFKPEPSGYFM- 236 Query: 239 PDPAGTIALVPGYF-----YVWMGGPGWAEQYSDGS 269 A+V G + + ++GGP W DGS Sbjct: 237 -------AMVDGEYKPIIKHTFIGGPAWDALAGDGS 265 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 36/225 (16%) Query: 23 IERGGLQAVFIRDNRGAATDMSPFEDDCVTVK----WSPFAQDGKLRDDLFIRRKVNGKY 78 + + + + IRD R + D V + +SPFA+DGKLR DL + Sbjct: 23 VRKAIITDILIRDYRNLDGTVHNLADPAVGLGNDGFFSPFAEDGKLRSDLLGDNGL---- 78 Query: 79 EYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFPVDSEVTEKSYSVRFVAL-G 137 G++H+G ED G E D D M+ QSK V +VT+ + + AL G Sbjct: 79 --------GFYHLGALHED-GTEMTYDTDVADTMIAQSKRAVRFDVTQDNDGITIKALEG 129 Query: 138 TADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADSAEYQLLLLYARRTSGGF- 196 T PL+ L + PL A D G+ A AE + L+ + + GF Sbjct: 130 T--PLVDALRYDKPLHSLA-----------DVGQAHYTIAKDAETK--LVERQVIAIGFD 174 Query: 197 --IYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMRP 239 Y A+ +P + L ++ + +K D D ++ L + +P Sbjct: 175 GDNYFAQTFPRMSLRNRGNSSWNKADADVMEIELGALLCPFVGKP 219 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 55 WSPF-AQDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMV 113 ++PF DG L+D L G++ + IG EDG E P ++DD + Sbjct: 40 FTPFDPTDGNLKDTLLSEDFPGGRF----------YEIGAITEDG-VEFNPKFSTDDTKI 88 Query: 114 LQSKFPVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGP 173 QS+ ++VTE V F A PLI L LPL + V GT Y Sbjct: 89 WQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLEN------VPSVGTAGYKATK 141 Query: 174 LLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPN 233 D Q++++ Y AE P V L + + D +LT+ V Sbjct: 142 PNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKAKEIDGTELTFGVY-- 199 Query: 234 EYFMRPDPAGTIAL--VPGYFYVWMGGPGWAEQ 264 PDPA +P GGP WAE Sbjct: 200 -----PDPASGFPARRIP-------GGPFWAES 220 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 55 WSPF-AQDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMV 113 ++PF DG L+D L G++ + IG EDG E P ++DD + Sbjct: 40 FTPFDPTDGNLKDTLLSEDFPGGRF----------YEIGAITEDG-VEFNPKFSTDDTKI 88 Query: 114 LQSKFPVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGP 173 QS+ ++VTE V F A PLI L LPL + V GT Y Sbjct: 89 WQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLEN------VPSVGTAGYKATK 141 Query: 174 LLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPN 233 D Q++++ Y AE P V L + + D +LT+ V Sbjct: 142 PNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKAKEIDGTELTFGVY-- 199 Query: 234 EYFMRPDPAGTIAL--VPGYFYVWMGGPGWAEQ 264 PDPA +P GGP WAE Sbjct: 200 -----PDPASGFPARRIP-------GGPFWAES 220 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 22.7 bits (47), Expect = 4.7, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 146 LESELPLCDNAGNPLVALPGTP 167 ++ +P + A NPL+ L GTP Sbjct: 177 MDDMVPATNAAPNPLILLAGTP 198 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 22.7 bits (47), Expect = 5.3, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 150 LPLCDNAGNPLVALPGTP 167 +P + NPL+ L GTP Sbjct: 179 IPTMNTVENPLILLTGTP 196 >gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp11 # Family: family:all:698 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285587;genbank:gi:148727093;genbank:Ge neID:5247041 Length = 213 Score = 22.3 bits (46), Expect = 5.9, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 97 DGGAEREPDVTSDDLMVLQSKFPVDSEVTEKSYSVRFVALGTADPLIH 144 D G + +P+ +DDL Q+ V + TE S + F + + +I Sbjct: 47 DDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIE 94 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 22.3 bits (46), Expect = 6.1, Method: Compositional matrix adjust. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 157 GNPLVALPGTPDYGEGPLLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQAS 213 G ++ P GEG + + +A+YQ ++ R G + E + D+ S Sbjct: 187 GGSIIETPNAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSDEQS 243 >gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052270;genbank:gi:9634077;genbank:GeneID :1262451 Length = 173 Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Query: 36 NRGAATDMSPFEDDCVTVKWS 56 N AA D+ +DD +TV+WS Sbjct: 44 NGAAAIDLG-LDDDALTVEWS 63 >gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp22 # Family: family:all:129 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958077;genbank:gi:41057374;genbank:GeneI D:2744217 Length = 172 Score = 21.9 bits (45), Expect = 7.6, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Query: 36 NRGAATDMSPFEDDCVTVKWS 56 N AA D+ +DD +TV+WS Sbjct: 44 NGAAAIDLG-LDDDALTVEWS 63 >gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453570;genbank:gi:84662605;genbank:GeneID :5142496 Length = 210 Score = 21.9 bits (45), Expect = 9.1, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 14/27 (51%) Query: 156 AGNPLVALPGTPDYGEGPLLDADSAEY 182 A NP VA T D G+ +L A A Y Sbjct: 28 AANPSVATGTTADVGDVVVLSAAGAPY 54 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.138 0.433 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,650 Number of Sequences: 514 Number of extensions: 6999 Number of successful extensions: 30 Number of sequences better than 100.0: 19 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 19 length of query: 269 length of database: 206,069 effective HSP length: 70 effective length of query: 199 effective length of database: 170,089 effective search space: 33847711 effective search space used: 33847711 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)