Query lcl|Aclame:protein:vir:6240|NCBI_annot:gp34|genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Match_columns 457 No_of_seqs 137 out of 1112 Neff 10.2 Searched_HMMs 1612 Date Sat Nov 30 12:15:50 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_3 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_3_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:6240 Length: 457 # 100.0 8E-113 5E-116 635.1 48.5 457 1-457 1-457 (457) 2 protein:vir:1326 Length: 457 # 100.0 2E-109 1E-112 616.7 48.4 457 1-457 1-457 (457) 3 protein:vir:107605 Length: 432 100.0 8.8E-97 5E-100 547.2 46.7 429 1-445 1-432 (432) 4 protein:vir:102855 Length: 432 100.0 8.8E-97 5E-100 547.2 46.7 429 1-445 1-432 (432) 5 protein:vir:105002 Length: 432 100.0 8.8E-97 5E-100 547.2 46.7 429 1-445 1-432 (432) 6 protein:vir:102080 Length: 429 100.0 3.7E-96 2.3E-99 543.8 46.4 426 1-445 1-429 (429) 7 protein:vir:4454 Length: 414 # 100.0 1E-95 6.5E-99 541.3 45.5 413 1-454 1-414 (414) 8 protein:vir:100249 Length: 431 100.0 4.8E-96 3E-99 543.2 43.3 409 1-422 1-431 (431) 9 protein:vir:81152 Length: 411 100.0 4.7E-95 2.9E-98 537.7 43.4 409 1-425 1-411 (411) 10 protein:vir:93610 Length: 454 100.0 1.9E-94 1.2E-97 534.4 44.1 439 3-457 1-443 (454) 11 protein:vir:1380 Length: 422 # 100.0 4.3E-94 2.7E-97 532.4 43.9 416 1-435 1-422 (422) 12 protein:vir:4337 Length: 434 # 100.0 3.7E-94 2.3E-97 532.8 43.4 424 3-438 1-434 (434) 13 protein:vir:100150 Length: 437 100.0 2.6E-93 1.6E-96 528.2 45.4 432 1-448 1-437 (437) 14 protein:vir:81072 Length: 432 100.0 5.4E-93 3.4E-96 526.4 44.2 422 1-455 7-432 (432) 15 protein:vir:10362 Length: 432 100.0 5E-93 3.1E-96 526.6 43.6 422 1-455 7-432 (432) 16 protein:vir:97060 Length: 432 100.0 7.4E-93 4.6E-96 525.7 44.5 422 1-455 7-432 (432) 17 protein:vir:4509 Length: 424 # 100.0 1.2E-92 7.4E-96 524.5 43.6 405 1-448 16-424 (424) 18 protein:vir:101648 Length: 518 100.0 5.9E-92 3.6E-95 520.7 46.3 445 1-457 1-451 (518) 19 protein:vir:483 Length: 413 # 100.0 3.2E-92 2E-95 522.2 44.7 412 2-451 1-413 (413) 20 protein:vir:7853 Length: 518 # 100.0 6.5E-92 4.1E-95 520.5 46.0 445 1-457 1-451 (518) 21 protein:vir:1884 Length: 424 # 100.0 6.2E-92 3.8E-95 520.6 44.6 405 1-425 14-424 (424) 22 protein:vir:8418 Length: 409 # 100.0 6.6E-92 4.1E-95 520.5 43.9 406 1-436 1-409 (409) 23 protein:vir:102118 Length: 409 100.0 8.9E-92 5.5E-95 519.8 44.5 406 1-425 1-409 (409) 24 protein:vir:5737 Length: 419 # 100.0 6.1E-92 3.8E-95 520.6 43.2 412 1-441 1-419 (419) 25 protein:vir:105064 Length: 421 100.0 8.9E-92 5.5E-95 519.8 43.3 414 1-446 1-421 (421) 26 protein:vir:189 Length: 424 # 100.0 2E-91 1.3E-94 517.8 43.2 405 1-425 14-424 (424) 27 protein:vir:1431 Length: 419 # 100.0 5E-90 3.1E-93 510.2 43.9 412 2-453 1-419 (419) 28 protein:vir:1266 Length: 416 # 100.0 5.4E-90 3.3E-93 510.0 43.7 413 2-436 1-416 (416) 29 protein:vir:9408 Length: 441 # 100.0 2.3E-89 1.5E-92 506.5 43.8 414 1-438 26-441 (441) 30 protein:vir:79984 Length: 441 100.0 2.3E-89 1.5E-92 506.5 43.8 414 1-438 26-441 (441) 31 protein:vir:98396 Length: 441 100.0 2.5E-89 1.6E-92 506.3 43.7 414 1-438 26-441 (441) 32 protein:vir:81218 Length: 423 100.0 2.3E-89 1.4E-92 506.5 43.2 408 1-423 1-423 (423) 33 protein:vir:81095 Length: 416 100.0 4.4E-89 2.7E-92 505.0 43.8 414 1-438 1-416 (416) 34 protein:vir:4598 Length: 416 # 100.0 4.4E-89 2.7E-92 505.0 43.8 414 1-438 1-416 (416) 35 protein:vir:80333 Length: 419 100.0 3.5E-89 2.2E-92 505.5 41.8 411 1-457 1-417 (419) 36 protein:vir:3868 Length: 417 # 100.0 3E-88 1.9E-91 500.4 43.3 415 1-454 1-417 (417) 37 protein:vir:101647 Length: 460 100.0 9.7E-88 6E-91 497.6 42.4 417 1-434 2-460 (460) 38 protein:vir:2683 Length: 412 # 100.0 2E-87 1.2E-90 495.9 43.5 407 1-457 1-412 (412) 39 protein:vir:96980 Length: 409 100.0 1.2E-86 7.5E-90 491.6 43.0 404 1-449 4-409 (409) 40 protein:vir:8100 Length: 466 # 100.0 3.1E-86 1.9E-89 489.4 44.3 427 1-455 1-466 (466) 41 protein:vir:9702 Length: 406 # 100.0 4.1E-86 2.5E-89 488.7 42.4 403 1-454 1-406 (406) 42 protein:vir:93943 Length: 409 100.0 1E-85 6.3E-89 486.6 43.2 404 1-449 4-409 (409) 43 protein:vir:94426 Length: 409 100.0 4.3E-85 2.7E-88 483.1 43.1 403 1-449 4-409 (409) 44 protein:vir:94666 Length: 723 100.0 1.7E-84 1E-87 479.9 43.1 421 1-457 1-445 (723) 45 protein:vir:95378 Length: 406 100.0 2.7E-84 1.7E-87 478.7 43.3 400 1-452 1-406 (406) 46 protein:vir:8317 Length: 409 # 100.0 9.6E-85 6E-88 481.2 39.4 379 1-409 1-409 (409) 47 protein:vir:960 Length: 413 # 100.0 1.3E-82 8E-86 469.5 40.7 395 1-425 13-413 (413) 48 protein:vir:6210 Length: 394 # 100.0 1.7E-82 1.1E-85 468.8 39.3 390 1-435 1-394 (394) 49 protein:vir:80134 Length: 403 100.0 3.5E-82 2.1E-85 467.2 40.8 396 1-440 1-403 (403) 50 protein:vir:102727 Length: 945 100.0 5.2E-81 3.2E-84 460.7 43.9 441 1-457 62-539 (945) 51 protein:vir:104259 Length: 403 100.0 1.8E-81 1.1E-84 463.3 40.0 392 1-445 1-403 (403) 52 protein:vir:3843 Length: 397 # 100.0 1.5E-80 9.5E-84 458.2 41.2 395 1-447 1-397 (397) 53 protein:vir:100187 Length: 385 100.0 1.4E-79 8.8E-83 452.9 40.4 381 1-417 1-385 (385) 54 protein:vir:80644 Length: 551 100.0 1.2E-78 7.6E-82 447.7 44.1 448 1-457 5-536 (551) 55 protein:vir:80796 Length: 574 100.0 1.8E-78 1.1E-81 446.8 42.1 447 1-457 27-524 (574) 56 protein:vir:95965 Length: 385 100.0 9.8E-79 6.1E-82 448.3 37.7 375 1-435 1-385 (385) 57 protein:vir:101289 Length: 395 100.0 2.2E-78 1.4E-81 446.3 39.4 388 1-445 1-395 (395) 58 protein:vir:9507 Length: 395 # 100.0 2.2E-78 1.4E-81 446.3 39.4 388 1-445 1-395 (395) 59 protein:vir:100650 Length: 395 100.0 2.2E-78 1.4E-81 446.3 39.4 388 1-445 1-395 (395) 60 protein:vir:63755 Length: 547 100.0 2.7E-77 1.7E-80 440.3 43.7 448 1-457 1-532 (547) 61 protein:vir:100882 Length: 383 100.0 1.8E-77 1.1E-80 441.3 41.0 378 1-437 1-383 (383) 62 protein:vir:7407 Length: 392 # 100.0 2E-77 1.2E-80 441.1 38.9 385 1-421 3-392 (392) 63 protein:vir:9359 Length: 348 # 100.0 7.9E-77 4.9E-80 437.8 39.7 345 66-431 1-348 (348) 64 protein:vir:96579 Length: 576 100.0 1.3E-75 8E-79 431.2 44.6 446 1-457 6-533 (576) 65 protein:vir:1023 Length: 392 # 100.0 1.8E-76 1.1E-79 435.9 39.0 385 1-421 3-392 (392) 66 protein:vir:3989 Length: 392 # 100.0 1.8E-76 1.1E-79 435.9 39.0 385 1-421 3-392 (392) 67 protein:vir:4854 Length: 386 # 100.0 2.5E-76 1.6E-79 435.1 39.7 383 1-440 1-386 (386) 68 protein:vir:4995 Length: 384 # 100.0 5.1E-77 3.2E-80 438.8 35.2 378 1-403 1-384 (384) 69 protein:vir:99312 Length: 563 100.0 2.4E-75 1.5E-78 429.6 42.8 441 1-457 43-533 (563) 70 protein:vir:95599 Length: 563 100.0 2.4E-75 1.5E-78 429.6 42.8 441 1-457 43-533 (563) 71 protein:vir:4089 Length: 395 # 100.0 2.2E-75 1.4E-78 429.9 37.1 390 1-441 1-395 (395) 72 protein:vir:78310 Length: 376 100.0 1.4E-75 8.7E-79 431.0 35.9 368 1-418 1-376 (376) 73 protein:vir:1082 Length: 359 # 100.0 4.7E-75 2.9E-78 428.1 37.2 353 1-395 1-359 (359) 74 protein:vir:100691 Length: 535 100.0 4.2E-74 2.6E-77 422.9 42.2 445 1-457 1-533 (535) 75 protein:vir:9641 Length: 395 # 100.0 3.5E-74 2.1E-77 423.3 36.6 382 1-438 1-395 (395) 76 protein:vir:4194 Length: 540 # 100.0 1.7E-73 1E-76 419.5 40.0 427 1-457 6-478 (540) 77 protein:vir:4952 Length: 386 # 100.0 2.1E-73 1.3E-76 419.0 39.3 384 1-440 1-386 (386) 78 protein:vir:4156 Length: 542 # 100.0 5E-73 3.1E-76 417.0 39.7 432 3-457 1-480 (542) 79 protein:vir:3153 Length: 467 # 100.0 1.3E-72 7.9E-76 414.7 41.1 406 45-457 1-465 (467) 80 protein:vir:4828 Length: 382 # 100.0 9.7E-73 6E-76 415.4 38.8 377 1-440 1-382 (382) 81 protein:vir:98643 Length: 395 100.0 5.6E-73 3.5E-76 416.7 37.3 385 1-441 1-395 (395) 82 protein:vir:94002 Length: 378 100.0 5.3E-73 3.3E-76 416.8 35.8 360 1-442 1-378 (378) 83 protein:vir:93867 Length: 378 100.0 9.5E-73 5.9E-76 415.4 35.8 360 1-443 1-378 (378) 84 protein:vir:1661 Length: 378 # 100.0 2E-72 1.3E-75 413.6 36.0 362 1-443 1-378 (378) 85 protein:vir:858 Length: 378 # 100.0 2.6E-70 1.6E-73 402.0 35.8 360 1-443 1-378 (378) 86 protein:vir:94869 Length: 378 100.0 4.8E-70 3E-73 400.6 35.8 360 1-443 1-378 (378) 87 protein:vir:99452 Length: 651 100.0 7.5E-68 4.7E-71 388.6 35.0 436 1-457 1-553 (651) 88 protein:vir:79772 Length: 648 100.0 1.1E-65 6.8E-69 376.7 42.3 438 1-457 8-516 (648) 89 protein:vir:78641 Length: 278 100.0 1.5E-57 9E-61 332.2 32.6 276 66-359 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 3.9E-54 2.4E-57 313.4 26.1 345 1-377 1-368 (368) 91 protein:vir:267 Length: 348 # 100.0 1.9E-52 1.2E-55 304.1 30.5 323 1-368 1-348 (348) 92 protein:vir:103971 Length: 376 100.0 3.3E-52 2.1E-55 302.8 31.2 321 1-366 26-376 (376) 93 protein:vir:100328 Length: 346 100.0 4.6E-52 2.9E-55 302.0 28.7 333 1-364 1-346 (346) 94 protein:vir:79207 Length: 351 100.0 1.8E-51 1.1E-54 298.8 30.6 321 1-366 1-351 (351) 95 protein:vir:78191 Length: 351 100.0 2.8E-51 1.7E-54 297.7 30.5 321 1-366 1-351 (351) 96 protein:vir:98567 Length: 340 100.0 2.5E-51 1.6E-54 298.0 28.1 326 1-363 1-340 (340) 97 protein:vir:3780 Length: 345 # 100.0 1.7E-50 1.1E-53 293.4 32.4 333 1-361 1-345 (345) 98 protein:vir:3743 Length: 345 # 100.0 1.7E-50 1.1E-53 293.4 30.7 320 7-361 1-345 (345) 99 protein:vir:6058 Length: 344 # 100.0 4E-50 2.5E-53 291.4 30.7 330 3-364 1-344 (344) 100 protein:vir:1150 Length: 350 # 100.0 1E-49 6.5E-53 289.1 30.5 327 1-359 1-350 (350) 101 protein:vir:5691 Length: 344 # 100.0 9.5E-50 5.9E-53 289.3 30.1 326 1-364 1-344 (344) 102 protein:vir:78749 Length: 337 100.0 2.7E-50 1.7E-53 292.3 26.6 322 7-360 1-337 (337) 103 protein:vir:2013 Length: 344 # 100.0 2.7E-49 1.7E-52 286.8 30.8 324 1-364 1-344 (344) 104 protein:vir:4698 Length: 251 # 100.0 5.4E-48 3.3E-51 279.7 26.0 249 1-267 1-251 (251) 105 protein:vir:98853 Length: 219 100.0 1.9E-43 1.2E-46 254.8 23.2 213 141-363 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 3.1E-26 1.9E-29 160.4 29.5 396 1-452 1-437 (437) 107 protein:vir:94049 Length: 532 99.9 6.3E-24 3.9E-27 147.8 30.7 434 1-457 17-523 (532) 108 protein:vir:107742 Length: 537 99.9 6.4E-24 4E-27 147.7 30.5 422 1-455 55-537 (537) 109 protein:vir:108215 Length: 469 99.9 1.4E-20 8.8E-24 129.4 33.6 426 3-457 1-469 (469) 110 protein:vir:79647 Length: 435 99.9 9.1E-22 5.6E-25 135.9 26.4 392 1-448 1-435 (435) 111 protein:vir:99563 Length: 862 99.8 7.1E-21 4.4E-24 131.1 30.3 433 1-457 66-595 (862) 112 protein:vir:79538 Length: 502 99.8 1.6E-21 1E-24 134.6 24.5 438 1-448 1-502 (502) 113 protein:vir:96068 Length: 765 99.8 1.3E-19 8E-23 124.1 30.4 431 1-457 1-566 (765) 114 protein:vir:80040 Length: 461 99.8 2.4E-20 1.5E-23 128.2 26.3 401 1-444 1-461 (461) 115 protein:vir:103860 Length: 528 99.8 5.4E-19 3.3E-22 120.7 32.5 416 1-457 1-459 (528) 116 protein:vir:99232 Length: 526 99.8 8.5E-19 5.3E-22 119.6 31.1 410 1-457 1-452 (526) 117 protein:vir:99853 Length: 488 99.8 3E-19 1.8E-22 122.2 28.1 398 8-457 1-422 (488) 118 protein:vir:104338 Length: 422 99.8 1.6E-19 9.9E-23 123.6 25.9 385 1-455 1-422 (422) 119 protein:vir:79233 Length: 526 99.8 1.6E-18 9.9E-22 118.1 30.8 411 1-457 1-452 (526) 120 protein:vir:96738 Length: 505 99.8 5.4E-20 3.3E-23 126.2 21.7 432 1-456 8-505 (505) 121 protein:vir:95542 Length: 548 99.8 4.9E-20 3E-23 126.5 21.0 454 1-457 1-544 (548) 122 protein:vir:107662 Length: 427 99.8 2.1E-19 1.3E-22 123.0 23.5 380 1-456 1-427 (427) 123 protein:vir:6382 Length: 553 # 99.8 1.7E-19 1.1E-22 123.5 21.4 444 1-450 2-553 (553) 124 protein:vir:79063 Length: 491 99.8 1.1E-17 7.1E-21 113.5 31.3 403 1-457 3-432 (491) 125 protein:vir:10321 Length: 495 99.8 3.3E-19 2E-22 121.9 22.2 431 1-448 1-495 (495) 126 protein:vir:389 Length: 530 # 99.8 6.4E-19 4E-22 120.3 23.4 439 1-457 1-530 (530) 127 protein:vir:107880 Length: 491 99.7 1.1E-17 6.8E-21 113.6 29.0 404 1-457 3-432 (491) 128 protein:vir:79511 Length: 448 99.7 1.1E-17 6.9E-21 113.5 28.0 408 7-444 1-448 (448) 129 protein:vir:3420 Length: 533 # 99.7 1.2E-18 7.1E-22 118.9 22.1 440 1-457 3-533 (533) 130 protein:vir:1986 Length: 512 # 99.7 3.4E-17 2.1E-20 110.9 28.1 409 1-457 12-450 (512) 131 protein:vir:77981 Length: 448 99.7 4.9E-17 3E-20 110.0 28.4 402 1-457 1-439 (448) 132 protein:vir:98816 Length: 446 99.7 2.6E-17 1.6E-20 111.5 26.5 383 1-398 1-446 (446) 133 protein:vir:95254 Length: 488 99.7 2.7E-16 1.7E-19 105.9 30.2 420 1-456 1-488 (488) 134 protein:vir:106491 Length: 646 99.6 3E-15 1.9E-18 100.2 24.8 438 1-457 1-499 (646) 135 protein:vir:102426 Length: 631 99.5 1E-14 6.4E-18 97.3 21.6 440 1-457 1-527 (631) 136 protein:vir:105782 Length: 449 99.4 9E-14 5.6E-17 92.1 22.5 379 1-430 23-449 (449) 137 protein:vir:106716 Length: 698 99.4 2.5E-13 1.5E-16 89.7 23.4 438 1-457 52-577 (698) 138 protein:vir:78161 Length: 355 99.4 1.2E-12 7.2E-16 86.0 26.8 309 120-457 1-336 (355) 139 protein:vir:78589 Length: 695 99.4 6.8E-13 4.2E-16 87.3 23.9 437 1-457 52-574 (695) 140 protein:vir:101541 Length: 694 99.4 9.8E-13 6.1E-16 86.4 24.1 437 1-457 65-573 (694) 141 protein:vir:8654 Length: 629 # 99.4 6.6E-13 4.1E-16 87.4 22.4 436 1-457 1-520 (629) 142 protein:vir:106027 Length: 629 99.4 1.7E-12 1.1E-15 85.1 24.1 436 1-457 1-515 (629) 143 protein:vir:99088 Length: 629 99.4 8.2E-13 5.1E-16 86.8 22.2 436 1-457 1-520 (629) 144 protein:vir:3648 Length: 695 # 99.4 1.8E-12 1.1E-15 85.0 23.8 437 1-457 52-574 (695) 145 protein:vir:98444 Length: 434 99.3 2E-11 1.2E-14 79.2 24.6 379 34-449 1-434 (434) 146 protein:vir:96494 Length: 501 99.2 2.6E-10 1.6E-13 73.2 28.4 424 1-454 38-501 (501) 147 protein:vir:4898 Length: 502 # 99.2 4.6E-10 2.8E-13 71.8 28.8 426 1-454 31-502 (502) 148 protein:vir:5961 Length: 503 # 99.2 6.2E-10 3.8E-13 71.1 29.0 419 1-457 13-503 (503) 149 protein:vir:99916 Length: 504 99.2 8.1E-11 5E-14 75.9 24.0 430 1-449 23-504 (504) 150 protein:vir:107517 Length: 639 99.2 7.3E-11 4.6E-14 76.1 23.7 437 1-457 1-526 (639) 151 protein:vir:97900 Length: 639 99.2 7.3E-11 4.6E-14 76.1 23.7 437 1-457 1-526 (639) 152 protein:vir:96240 Length: 511 99.2 4.7E-10 2.9E-13 71.7 27.8 425 1-450 40-511 (511) 153 protein:vir:2341 Length: 488 # 99.2 1.9E-11 1.2E-14 79.4 19.9 415 1-457 10-486 (488) 154 protein:vir:97171 Length: 512 99.2 1.5E-10 9.4E-14 74.4 24.5 425 1-454 42-512 (512) 155 protein:vir:2732 Length: 501 # 99.1 7.4E-10 4.6E-13 70.6 28.1 424 1-452 38-501 (501) 156 protein:vir:9306 Length: 511 # 99.1 4.3E-10 2.7E-13 71.9 26.6 425 1-454 40-511 (511) 157 protein:vir:7987 Length: 456 # 99.1 2E-11 1.2E-14 79.3 18.7 406 1-443 7-456 (456) 158 protein:vir:103951 Length: 511 99.1 8E-10 5E-13 70.5 27.1 425 1-452 39-511 (511) 159 protein:vir:7768 Length: 484 # 99.1 8.6E-11 5.3E-14 75.8 21.7 413 1-457 1-482 (484) 160 protein:vir:2427 Length: 485 # 99.1 4.3E-10 2.7E-13 71.9 24.7 412 1-457 6-484 (485) 161 protein:vir:4782 Length: 522 # 99.1 5.9E-10 3.7E-13 71.2 25.4 417 1-449 1-522 (522) 162 protein:vir:78805 Length: 511 99.1 5.2E-10 3.2E-13 71.5 25.0 425 1-450 39-511 (511) 163 protein:vir:96366 Length: 511 99.1 5.2E-10 3.2E-13 71.5 25.0 425 1-450 39-511 (511) 164 protein:vir:104082 Length: 485 99.1 6E-10 3.7E-13 71.1 24.9 418 1-457 8-484 (485) 165 protein:vir:99781 Length: 511 99.1 2.1E-09 1.3E-12 68.1 27.2 425 1-450 39-511 (511) 166 protein:vir:98883 Length: 517 99.1 5.5E-10 3.4E-13 71.4 23.7 419 1-450 1-517 (517) 167 protein:vir:1587 Length: 508 # 99.1 9.5E-10 5.9E-13 70.1 24.9 406 1-450 1-508 (508) 168 protein:vir:94101 Length: 474 99.1 2.2E-09 1.4E-12 68.0 26.8 405 1-455 35-474 (474) 169 protein:vir:105889 Length: 474 99.1 2.2E-09 1.4E-12 68.0 26.8 405 1-455 35-474 (474) 170 protein:vir:102602 Length: 456 99.0 1E-10 6.4E-14 75.3 19.3 406 1-436 7-456 (456) 171 protein:vir:105819 Length: 456 99.0 1E-10 6.4E-14 75.3 19.3 406 1-436 7-456 (456) 172 protein:vir:79703 Length: 505 99.0 1.8E-09 1.1E-12 68.5 24.4 402 1-445 1-505 (505) 173 protein:vir:38 Length: 496 # N 99.0 1.8E-09 1.1E-12 68.6 23.8 406 3-438 1-496 (496) 174 protein:vir:3028 Length: 500 # 99.0 5.9E-09 3.6E-12 65.7 25.7 407 1-443 1-500 (500) 175 protein:vir:9815 Length: 500 # 99.0 5.9E-09 3.6E-12 65.7 25.7 407 1-443 1-500 (500) 176 protein:vir:4223 Length: 486 # 99.0 2.9E-09 1.8E-12 67.4 24.0 414 1-446 6-486 (486) 177 protein:vir:94742 Length: 409 98.9 1.1E-08 6.6E-12 64.3 27.2 357 1-395 3-409 (409) 178 protein:vir:78907 Length: 518 98.9 1E-08 6.2E-12 64.4 25.5 414 1-450 1-518 (518) 179 protein:vir:80959 Length: 499 98.9 4.4E-09 2.7E-12 66.4 23.3 405 3-439 1-499 (499) 180 protein:vir:78537 Length: 480 98.9 6.5E-09 4E-12 65.5 24.1 424 1-452 1-480 (480) 181 protein:vir:106639 Length: 481 98.9 1.8E-08 1.1E-11 63.1 26.5 414 1-449 32-481 (481) 182 protein:vir:5839 Length: 533 # 98.9 6.4E-09 4E-12 65.5 23.2 440 1-457 4-526 (533) 183 protein:vir:79043 Length: 479 98.9 1.9E-08 1.2E-11 63.0 25.6 399 1-454 20-479 (479) 184 protein:vir:78227 Length: 480 98.8 1.4E-08 8.8E-12 63.6 24.0 424 1-452 1-480 (480) 185 protein:vir:8184 Length: 474 # 98.8 1.4E-08 8.5E-12 63.7 23.0 408 1-437 17-474 (474) 186 protein:vir:9751 Length: 422 # 98.8 1.6E-08 1E-11 63.3 23.4 372 1-424 4-422 (422) 187 protein:vir:95806 Length: 440 98.8 4.8E-08 3E-11 60.7 26.2 404 3-438 1-440 (440) 188 protein:vir:1634 Length: 409 # 98.8 6E-08 3.7E-11 60.2 26.5 354 1-395 3-409 (409) 189 protein:vir:99522 Length: 470 98.7 3.3E-08 2.1E-11 61.6 22.8 404 1-456 1-470 (470) 190 protein:vir:2500 Length: 501 # 98.7 2.8E-08 1.7E-11 62.0 21.6 407 1-457 29-501 (501) 191 protein:vir:80680 Length: 441 98.7 2.9E-08 1.8E-11 61.9 21.3 391 1-449 6-441 (441) 192 protein:vir:95113 Length: 474 98.6 1.5E-07 9.3E-11 58.0 29.2 400 1-455 29-474 (474) 193 protein:vir:1236 Length: 483 # 98.6 1.5E-07 9.5E-11 58.0 28.7 402 1-452 34-483 (483) 194 protein:vir:94805 Length: 492 98.6 1.9E-07 1.2E-10 57.5 29.2 402 1-454 43-492 (492) 195 protein:vir:99072 Length: 479 98.6 9.4E-08 5.8E-11 59.1 21.8 408 1-457 15-472 (479) 196 protein:vir:93747 Length: 472 98.6 2E-07 1.2E-10 57.3 29.3 402 1-454 22-472 (472) 197 protein:vir:94546 Length: 506 98.6 2E-07 1.3E-10 57.3 23.8 419 1-452 28-506 (506) 198 protein:vir:97336 Length: 492 98.6 2.2E-07 1.3E-10 57.1 28.1 402 1-454 42-492 (492) 199 protein:vir:3964 Length: 453 # 98.6 2.7E-07 1.6E-10 56.6 26.8 403 1-450 19-453 (453) 200 protein:vir:9568 Length: 410 # 98.5 3.2E-07 2E-10 56.2 25.3 359 1-423 1-410 (410) 201 protein:vir:103219 Length: 201 98.5 7.7E-09 4.8E-12 65.1 13.1 182 226-442 1-201 (201) 202 protein:vir:97447 Length: 474 98.5 5E-07 3.1E-10 55.2 29.0 398 1-450 29-474 (474) 203 protein:vir:94498 Length: 474 98.5 5E-07 3.1E-10 55.2 29.0 398 1-450 29-474 (474) 204 protein:vir:733 Length: 453 # 98.5 5.3E-07 3.3E-10 55.0 24.8 403 1-446 19-453 (453) 205 protein:vir:9871 Length: 429 # 98.5 5.6E-07 3.5E-10 54.9 25.0 385 1-447 1-429 (429) 206 protein:vir:95899 Length: 474 98.5 5.8E-07 3.6E-10 54.8 27.2 398 1-450 25-474 (474) 207 protein:vir:96266 Length: 474 98.5 5.8E-07 3.6E-10 54.8 27.2 398 1-450 25-474 (474) 208 protein:vir:78083 Length: 537 98.4 6.3E-07 3.9E-10 54.6 34.5 432 1-457 8-534 (537) 209 protein:vir:3609 Length: 452 # 98.4 8.2E-07 5.1E-10 53.9 25.7 397 1-456 17-452 (452) 210 protein:vir:106571 Length: 499 98.3 2E-06 1.3E-09 51.8 26.9 410 1-457 16-493 (499) 211 protein:vir:105292 Length: 478 98.2 2.3E-06 1.4E-09 51.5 29.4 400 1-448 23-478 (478) 212 protein:vir:4073 Length: 279 # 98.2 3.7E-08 2.3E-11 61.3 9.7 268 50-397 1-279 (279) 213 protein:vir:105461 Length: 470 98.0 7.4E-06 4.6E-09 48.7 27.2 397 1-450 7-470 (470) 214 protein:vir:102950 Length: 471 98.0 8.3E-06 5.2E-09 48.4 25.7 393 1-449 1-471 (471) 215 protein:vir:96839 Length: 474 98.0 9.1E-06 5.6E-09 48.2 29.8 397 1-453 28-474 (474) 216 protein:vir:107112 Length: 478 97.8 1.5E-05 9.3E-09 47.0 28.6 397 1-450 23-478 (478) 217 protein:vir:96179 Length: 468 97.8 1.7E-05 1E-08 46.8 27.6 390 1-440 24-468 (468) 218 protein:vir:9922 Length: 489 # 97.7 2.4E-05 1.5E-08 45.9 25.1 415 1-446 21-489 (489) 219 protein:vir:97376 Length: 320 97.2 2.8E-05 1.7E-08 45.5 12.7 312 1-428 1-320 (320) 220 protein:vir:103177 Length: 533 96.7 0.00039 2.4E-07 39.3 18.4 422 4-451 1-533 (533) 221 protein:vir:104500 Length: 537 96.4 0.0007 4.3E-07 37.9 24.8 427 3-451 1-537 (537) 222 protein:vir:102330 Length: 451 95.5 0.002 1.2E-06 35.4 28.3 389 1-431 1-451 (451) 223 protein:vir:106282 Length: 521 95.5 0.002 1.2E-06 35.4 21.1 414 1-440 1-521 (521) 224 protein:vir:106999 Length: 564 95.5 0.002 1.2E-06 35.4 21.4 433 4-456 1-564 (564) 225 protein:vir:3361 Length: 535 # 94.5 0.0031 1.9E-06 34.3 11.4 414 1-454 1-535 (535) 226 protein:vir:101494 Length: 527 94.4 0.0045 2.8E-06 33.4 27.9 407 1-447 1-527 (527) 227 protein:vir:102239 Length: 527 94.4 0.0046 2.9E-06 33.4 28.0 407 1-447 1-527 (527) 228 protein:vir:100598 Length: 516 94.2 0.0052 3.2E-06 33.1 21.9 412 1-440 1-516 (516) 229 protein:vir:81017 Length: 521 93.9 0.0059 3.7E-06 32.8 22.7 414 1-440 5-521 (521) 230 protein:vir:108049 Length: 524 93.5 0.0075 4.6E-06 32.2 20.4 414 1-440 1-524 (524) 231 protein:vir:101189 Length: 516 93.4 0.0075 4.7E-06 32.2 23.7 411 1-442 1-516 (516) 232 protein:vir:101806 Length: 516 93.4 0.0075 4.7E-06 32.2 23.7 411 1-442 1-516 (516) 233 protein:vir:98265 Length: 524 93.3 0.008 5E-06 32.1 23.7 414 1-440 4-524 (524) 234 protein:vir:104892 Length: 558 93.3 0.0082 5.1E-06 32.0 23.5 439 1-457 5-556 (558) 235 protein:vir:94709 Length: 522 93.0 0.0092 5.7E-06 31.8 15.8 422 1-457 1-522 (522) 236 protein:vir:5665 Length: 511 # 93.0 0.0092 5.7E-06 31.7 21.7 411 1-437 1-511 (511) 237 protein:vir:78696 Length: 542 92.9 0.0095 5.9E-06 31.7 19.0 406 1-452 1-542 (542) 238 protein:vir:107404 Length: 555 92.9 0.0089 5.5E-06 31.8 11.0 405 1-451 22-555 (555) 239 protein:vir:98506 Length: 555 92.9 0.0089 5.5E-06 31.8 11.0 405 1-451 22-555 (555) 240 protein:vir:107822 Length: 555 92.9 0.0089 5.5E-06 31.8 11.0 405 1-451 22-555 (555) 241 protein:vir:103765 Length: 549 91.5 0.015 9.5E-06 30.5 15.6 427 1-449 1-549 (549) 242 protein:vir:102668 Length: 547 89.7 0.025 1.5E-05 29.4 17.1 392 1-445 21-547 (547) 243 protein:vir:94572 Length: 535 89.5 0.026 1.6E-05 29.3 16.7 422 1-447 1-535 (535) 244 protein:vir:80165 Length: 651 89.0 0.029 1.8E-05 29.0 18.2 431 1-457 22-625 (651) 245 protein:vir:6596 Length: 521 # 88.7 0.031 1.9E-05 28.9 24.0 413 1-440 5-521 (521) 246 protein:vir:7017 Length: 515 # 86.7 0.044 2.7E-05 28.0 14.7 390 1-436 27-515 (515) 247 protein:vir:1538 Length: 535 # 86.5 0.045 2.8E-05 28.0 17.9 398 1-448 15-535 (535) 248 protein:vir:100039 Length: 522 86.2 0.047 2.9E-05 27.8 12.6 415 1-449 1-522 (522) 249 protein:vir:105154 Length: 525 83.6 0.067 4.2E-05 27.0 15.4 417 1-450 47-525 (525) 250 protein:vir:99672 Length: 532 82.7 0.075 4.6E-05 26.8 14.4 408 1-438 1-532 (532) 251 protein:vir:10447 Length: 536 82.6 0.076 4.7E-05 26.7 16.6 418 1-450 1-536 (536) 252 protein:vir:2198 Length: 536 # 81.4 0.086 5.4E-05 26.4 16.4 418 1-450 1-536 (536) 253 protein:vir:94956 Length: 452 80.5 0.095 5.9E-05 26.2 30.6 383 1-440 1-452 (452) 254 protein:vir:96988 Length: 516 80.1 0.098 6.1E-05 26.1 12.2 388 1-439 28-516 (516) 255 protein:vir:7430 Length: 563 # 77.2 0.13 7.9E-05 25.5 21.8 433 1-455 1-563 (563) 256 protein:vir:78942 Length: 510 77.1 0.13 8E-05 25.5 18.5 401 1-435 1-510 (510) 257 protein:vir:1785 Length: 555 # 77.1 0.13 8E-05 25.5 13.8 419 1-457 1-555 (555) 258 protein:vir:6322 Length: 510 # 75.5 0.15 9.1E-05 25.2 17.4 401 1-435 1-510 (510) 259 protein:vir:7208 Length: 524 # 72.4 0.18 0.00011 24.6 21.1 412 1-440 1-524 (524) 260 protein:vir:95315 Length: 559 71.6 0.19 0.00012 24.5 16.5 404 1-454 21-559 (559) 261 protein:vir:78393 Length: 489 71.4 0.2 0.00012 24.5 28.2 404 3-441 1-489 (489) 262 protein:vir:103458 Length: 524 70.0 0.21 0.00013 24.3 21.1 412 1-440 1-524 (524) 263 protein:vir:8883 Length: 543 # 69.8 0.22 0.00013 24.2 16.4 417 1-448 1-543 (543) 264 protein:vir:97265 Length: 513 68.7 0.23 0.00014 24.0 25.6 414 3-457 1-513 (513) 265 protein:vir:6896 Length: 523 # 63.7 0.31 0.00019 23.3 22.6 414 1-440 1-523 (523) 266 protein:vir:105641 Length: 516 53.3 0.53 0.00033 22.1 12.7 391 1-454 28-516 (516) 267 protein:vir:7321 Length: 556 # 50.6 0.61 0.00038 21.8 18.0 396 1-448 35-556 (556) 268 protein:vir:95014 Length: 491 32.8 1.4 0.00087 19.8 27.7 406 3-448 1-491 (491) 269 protein:vir:95149 Length: 501 21.8 2.5 0.0016 18.4 28.2 404 1-452 1-501 (501) No 1 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=8.1e-113 Score=635.10 Aligned_cols=457 Identities=100% Similarity=1.532 Sum_probs=434.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||++..+++.....+..+.+..+....+++.+.++..|+.+.|+++++|++||++||++||++|++++++.+++ T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCCc Confidence 99999999998888888888888888888888888888999999999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) +....++.++.++.+||++|++++||+.++.+++++||+|++|++++|++.+++||+|.+|++.++..++.....+..|. T Consensus 81 ~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~ 160 (457) T protein:vir:62 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) T ss_pred cccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcceEEEEeccCCccceeEEEEE Confidence 88889999999999999999999999999999999999999999999999999999999999999888888777777787 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR 240 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~ 240 (457) +...........|+++||||++++++.+.++|+||+..+.+.|....++++++.++|+||++|+++|+++..++++++++ T Consensus 161 ~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~ 240 (457) T protein:vir:62 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR 240 (457) T ss_pred EccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHHHHHH Confidence 77666666667899999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH Q lcl|Aclame:pro 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) Q Consensus 241 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~ 320 (457) +++.|++.++|..|++++++|++|++|++++++++|+||+|++++++++||++|||||.+||...++++++++.|++.+. T Consensus 241 ~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~ 320 (457) T protein:vir:62 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) T ss_pred HHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999 Q ss_pred HHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Q lcl|Aclame:pro 321 FTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) Q Consensus 321 ~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd 400 (457) |+++||.|++++||++||++|+++.+..+.+++||++.+++.|.+++++++++++++|+||+||+|+++||||++|++|| T Consensus 321 f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D 400 (457) T protein:vir:62 321 FTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcc Confidence 99999999999999999999999988877899999999999999999999999999999999999999999999999999 Q ss_pred eeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 401 KYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ++++|+|+++++...+.++++.+.+.++..+++.+++++++.++++++++++++||| T Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 457 (457) T protein:vir:62 401 KYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) T ss_pred eeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccccccccccC Confidence 999999999999999999888888888999999889999999999999999999999 No 2 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=1.8e-109 Score=616.70 Aligned_cols=457 Identities=93% Similarity=1.453 Sum_probs=430.3 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||++..+++......+.+++.++.+..+++.+.++..|+.+.|+++++|++||++||++||+||++++++.+++ T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 99999999999998888888888899999998888899999999999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) .+...++.++.++..||+.|++++||+.++.+++++||+|++|++++|++.+++||+|.+|++..+..++.....+..|. T Consensus 81 ~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~ 160 (457) T protein:vir:13 81 RKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQGPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) T ss_pred ccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEccCceEEEEecCCCccceeEEEEE Confidence 88888999999999888899999999999999999999999999999999999999999999999988888777888888 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR 240 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~ 240 (457) +...........|+++||||++++++.+.++|+||+..+...|....++.+++.++|+||++|+++|+++..++++++++ T Consensus 161 ~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~ 240 (457) T protein:vir:13 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEEGLAR 240 (457) T ss_pred EecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHHHHHH Confidence 77766666677899999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH Q lcl|Aclame:pro 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) Q Consensus 241 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~ 320 (457) +++.|++.++|..|+|++++|++|++|+++++++.|+||+|++++++++||++|||||.+||...++++++++.+++.+. T Consensus 241 ~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~ 320 (457) T protein:vir:13 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) T ss_pred HHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999 Q ss_pred HHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Q lcl|Aclame:pro 321 FTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) Q Consensus 321 ~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd 400 (457) |+++||.|++++||++||++|+++.+..+++++||++.+++.|.+++++++.+++++|+||+||+|+++||+|++|++|| T Consensus 321 f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d 400 (457) T protein:vir:13 321 FTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccc Confidence 99999999999999999999999988877899999999999999999999999999999999999999999999999999 Q ss_pred eeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 401 KYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ++++|+|+++++...+.+++..+++..++.+++.++.++.+..++.+.++..++||| T Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~ 457 (457) T protein:vir:13 401 KYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDDEDDA 457 (457) T ss_pred ceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCcccccC Confidence 999999999999999888888888888887777777777777777777788888888 No 3 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=8.8e-97 Score=547.19 Aligned_cols=429 Identities=22% Similarity=0.327 Sum_probs=361.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|+.+.+.-.+.........+.....+..+.+.+.++..|+.++++++++|++||++||++||++|++++++.+++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 99999974322111111222222333444555555666778889999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|.++.+| .+||++|++++|++.++.+++++||+|+++.++ .|++.+|+|++|++|++..+..+......... T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 7777788887777 589999999999999999999999999999987 48999999999999999888766554444444 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ..+....|+++||||++++.+.++++|+||+..+..+|....++.+++.++|+||+.|+++++++..+++++. T Consensus 161 y~~~---~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVVN---TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEEe---cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 4433 2344568999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+++..|+++++++++|++|+++++++.|++|++.+++++++||++|||||.+||....+++ ++.+++. T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~--s~~e~~~ 315 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL--NNIEQQQ 315 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998776654 5589999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ++|+++||+|++..||++||++|++..+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| T Consensus 316 ~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g- 394 (432) T protein:vir:10 316 QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG- 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999998875 5678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ||++++|+|+++++...+.... .+. ++.+ ..+...+++ T Consensus 395 -gD~~~~~~n~~~~~~~~~~~~k-~~~-------~~~~-~~~~~~~~~ 432 (432) T protein:vir:10 395 -GDRLLVNGNMLPIDMAGQAYLK-GGD-------TNGE-VSKEGNEGN 432 (432) T ss_pred -CCeEeecccccchhhccccccC-CCC-------CCCC-CCCCCCCCC Confidence 9999999999998776543221 111 0000 000111111 No 4 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=8.8e-97 Score=547.19 Aligned_cols=429 Identities=22% Similarity=0.327 Sum_probs=361.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|+.+.+.-.+.........+.....+..+.+.+.++..|+.++++++++|++||++||++||++|++++++.+++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 99999974322111111222222333444555555666778889999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|.++.+| .+||++|++++|++.++.+++++||+|+++.++ .|++.+|+|++|++|++..+..+......... T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 7777788887777 589999999999999999999999999999987 48999999999999999888766554444444 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ..+....|+++||||++++.+.++++|+||+..+..+|....++.+++.++|+||+.|+++++++..+++++. T Consensus 161 y~~~---~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVVN---TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEEe---cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 4433 2344568999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+++..|+++++++++|++|+++++++.|++|++.+++++++||++|||||.+||....+++ ++.+++. T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~--s~~e~~~ 315 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL--NNIEQQQ 315 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998776654 5589999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ++|+++||+|++..||++||++|++..+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| T Consensus 316 ~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g- 394 (432) T protein:vir:10 316 QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG- 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999998875 5678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ||++++|+|+++++...+.... .+. ++.+ ..+...+++ T Consensus 395 -gD~~~~~~n~~~~~~~~~~~~k-~~~-------~~~~-~~~~~~~~~ 432 (432) T protein:vir:10 395 -GDRLLVNGNMLPIDMAGQAYLK-GGD-------TNGE-VSKEGNEGN 432 (432) T ss_pred -CCeEeecccccchhhccccccC-CCC-------CCCC-CCCCCCCCC Confidence 9999999999998776543221 111 0000 000111111 No 5 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=8.8e-97 Score=547.19 Aligned_cols=429 Identities=22% Similarity=0.327 Sum_probs=361.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|+.+.+.-.+.........+.....+..+.+.+.++..|+.++++++++|++||++||++||++|++++++.+++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 99999974322111111222222333444555555666778889999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|.++.+| .+||++|++++|++.++.+++++||+|+++.++ .|++.+|+|++|++|++..+..+......... T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 7777788887777 589999999999999999999999999999987 48999999999999999888766554444444 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ..+....|+++||||++++.+.++++|+||+..+..+|....++.+++.++|+||+.|+++++++..+++++. T Consensus 161 y~~~---~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVVN---TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEEe---cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 4433 2344568999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+++..|+++++++++|++|+++++++.|++|++.+++++++||++|||||.+||....+++ ++.+++. T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~--s~~e~~~ 315 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL--NNIEQQQ 315 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998776654 5589999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ++|+++||+|++..||++||++|++..+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| T Consensus 316 ~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g- 394 (432) T protein:vir:10 316 QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG- 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999998875 5678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ||++++|+|+++++...+.... .+. ++.+ ..+...+++ T Consensus 395 -gD~~~~~~n~~~~~~~~~~~~k-~~~-------~~~~-~~~~~~~~~ 432 (432) T protein:vir:10 395 -GDRLLVNGNMLPIDMAGQAYLK-GGD-------TNGE-VSKEGNEGN 432 (432) T ss_pred -CCeEeecccccchhhccccccC-CCC-------CCCC-CCCCCCCCC Confidence 9999999999998776543221 111 0000 000111111 No 6 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=3.7e-96 Score=543.76 Aligned_cols=426 Identities=22% Similarity=0.344 Sum_probs=362.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++|+...+..... ...+.....+..+.+.+.++..|+.++|+++++|++||++||++||++|++++++.+++ T Consensus 1 M~~~~~~f~~~~r~~~~~---~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~ 77 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQV---IELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 77 (429) T ss_pred CchhhhhhcccccCcccc---cccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999999987544332111 11222334444555666678889999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|+++.+| .+||+.|++++|++.++.+++++||+|+++.++ .|++.+|+|++|++|++..+..+......... T Consensus 78 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~ 157 (429) T protein:vir:10 78 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 157 (429) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 7777777777766 589999999999999999999999999999987 48899999999999999988766555444444 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ..+..+.|+++||||++++.+.++++|+||+..+...|....++.+++.++|+||+.|+++++++..+++++. T Consensus 158 ~~~~---~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~ 234 (429) T protein:vir:10 158 YVVN---TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 234 (429) T ss_pred EEEc---cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 4443 2344578999999999998888999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+++..|+++++++++|++|+++++++.|+|++|.+++++++||++|||||.+||....+++ ++.+++. T Consensus 235 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~--sn~e~~~ 312 (429) T protein:vir:10 235 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL--NNIEQQQ 312 (429) T ss_pred HHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998776654 5589999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ..|+++||.|++..||++||++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|+ T Consensus 313 ~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~g- 391 (429) T protein:vir:10 313 QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG- 391 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999998875 5678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ||++++|+|+++++..++.+.. .+ ++++ +...+..|++ T Consensus 392 -gD~~~~~~n~~~~d~~~~~~~k-~g-------~~~~-~~~~~~~e~~ 429 (429) T protein:vir:10 392 -GDRLLVNGNMLPIDMAGQAYLK-GG-------DTNG-EVSKEGNEGN 429 (429) T ss_pred -cCeeeecccccchhhccccccC-CC-------CCCC-CCCCCCCCCC Confidence 9999999999998765543221 10 0000 1111111111 No 7 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=1e-95 Score=541.30 Aligned_cols=413 Identities=28% Similarity=0.483 Sum_probs=349.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||+|..+....... .. ......+....++..|+.+.++++++|++||++||++||++|++++++.+++ T Consensus 1 Mg~f~~lf~r~~~~~~~~~~----~~--~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~ 74 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPA----EL--ADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSL 74 (414) T ss_pred CchhhhhhccCccCcccchh----hH--hHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCc Confidence 99999999986554322111 01 1112233445677889999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....+|.++.+| .+||++|++++|++.++.+++++||+|+++++++|++.+++|++|..|++..+..+.. .| T Consensus 75 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~~g~~~~L~~l~~~~v~~~~~~~~~~------~y 148 (414) T protein:vir:44 75 KQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVPKLNSSWEP------VY 148 (414) T ss_pred eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCceEEEEECCCCcE------EE Confidence 7777777777766 6899999999999999999999999999999999999999999999999887765432 23 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~ 239 (457) .+.. ..+....|+++||||+++++ .++++|+||+..+..+|....++++++.++|+||++|++++.++..+++++.+ T Consensus 149 ~~~~--~~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~ 225 (414) T protein:vir:44 149 QVTF--PDGSTDVLSQEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYE 225 (414) T ss_pred EEEe--cCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHH Confidence 3322 33455689999999999875 57899999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH Q lcl|Aclame:pro 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 240 ~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~ 319 (457) +++++|++.+++.+|+++++++++|++|+++++++.|++|+|.++++.++||++|||||.+||..++++ +++.|++.+ T Consensus 226 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t--~~n~e~~~~ 303 (414) T protein:vir:44 226 RLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRAT--FNNIEELGL 303 (414) T ss_pred HHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHHHH Confidence 999999999999999999999999999999999999999999999999999999999999999876655 455899999 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLG 399 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~g 399 (457) .|+++||+|++++||++||++|+++.+..+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|+ | T Consensus 304 ~~~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--g 381 (414) T protein:vir:44 304 GFINYSLVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPG--G 381 (414) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--c Confidence 99999999999999999999999988877788999999999999999999999999999999999999999999987 9 Q ss_pred ceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 400 EKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 400 d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) |++++|+|++.......... +..++++.++++ + T Consensus 382 D~~~~~~n~~~~~~~~~~~~---------~~~~~~~~d~~~-------------~ 414 (414) T protein:vir:44 382 DVYLTPMNMTTKPSDGSKAG---------KQKDNANADETT-------------S 414 (414) T ss_pred ceecccccccccCCccccCC---------CCCCCCCCCCCC-------------C Confidence 99999999865432211000 000000000000 0 No 8 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=4.8e-96 Score=543.16 Aligned_cols=409 Identities=25% Similarity=0.379 Sum_probs=345.1 Q ss_pred Cchhhhhhccccccccccc---------------cccccccc-chhh-hcccccccCccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAA---------------EGRAWEPY-DPSI-YNLGATASSGERVTPHDALQVSAVFASVRLLS 63 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~---------------~~~~~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia 63 (457) ||||++|+++++..+.... .++.+... ++.+ ..+.+.+.++..|+.+.|+++++|++||++|| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 9999998765432111100 01111111 1111 12334455677889999999999999999999 Q ss_pred HhhccCceEEEEeccCceeeecCcchhh-hccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeE Q lcl|Aclame:pro 64 ETIATLPLSTYSKRGGTRKEIDTPEWLD-FPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIH 142 (457) Q Consensus 64 ~~ia~~p~~~~~~~~~~~~~~~~~~~~~-l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~ 142 (457) +++|++|++++++++++... .+|+++. |+.+||++|++++|++.++.+++++||+|++|.|++|++++++|++|.+|. T Consensus 81 ~~iA~lp~~v~~~~~~~~~~-~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~L~pl~~~~v~ 159 (431) T protein:vir:10 81 GTIGMLPMNLISSDDSKQVL-TDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAK 159 (431) T ss_pred HhhccCceEEEEecCceeee-ccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceEEEEEEcCceeE Confidence 99999999999886655544 4455555 456999999999999999999999999999999999999999999999999 Q ss_pred EEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 143 VHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAM 222 (457) Q Consensus 143 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~ 222 (457) +..+..+.. .|.+.. ..+....|+++||||+++++ .++++|+||+..+...|.+..+++++..++|+||++ T Consensus 160 ~~~~~~~~~------~y~~~~--~~g~~~~~~~~dViHir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~ 230 (431) T protein:vir:10 160 GRLTSTWQI------VYDYTT--PTGDKIELPAREVFHLRDLS-IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVM 230 (431) T ss_pred EEEcCCCeE------EEEEEe--CCceEEEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 987765433 222222 33455689999999999876 577999999999999999999999999999999999 Q ss_pred cceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhc Q lcl|Aclame:pro 223 PGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLIS 302 (457) Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg 302 (457) |+++++++..+++++.++++++|++.+++..|+|+++++++|++|++++++++|+||+|++++++++||++|||||.+|| T Consensus 231 p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg 310 (431) T protein:vir:10 231 AGGAIEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLM 310 (431) T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCC---- Q lcl|Aclame:pro 303 DATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNG---- 378 (457) Q Consensus 303 ~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g---- 378 (457) ...++ +++++|++.+.|+++||.||+++||++||++|+++.+..+++++||++.+++.|.+++++.++++++.| T Consensus 311 ~~~~~--t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g 388 (431) T protein:vir:10 311 MDDTS--WGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSP 388 (431) T ss_pred CCCCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccC Confidence 87654 456689999999999999999999999999999987777889999999999999999999999998765 Q ss_pred CcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccC Q lcl|Aclame:pro 379 IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA 422 (457) Q Consensus 379 ~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~ 422 (457) +||+||+|+++||||+++++||++++|+|+.+.+...++ ++.+ T Consensus 389 ~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~-p~~~ 431 (431) T protein:vir:10 389 WMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGSGDEP-PATT 431 (431) T ss_pred ccCHHHHHHHhCCCCCCCccccceecccccccCCCCCCC-CCCC Confidence 599999999999999999999999999998776554432 1111 No 9 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=4.7e-95 Score=537.72 Aligned_cols=409 Identities=22% Similarity=0.285 Sum_probs=352.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++.+.+..... +..++.+..+ ..+..++.+.++++++|++||++||++||++|++++++.+++ T Consensus 1 MG~~~~~~~~~~~~~~~~------~~~~~~~~~~----~g~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 70 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETV------DMTNPLLLQW----LGVDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERG 70 (411) T ss_pred CchHHHHHhhccCccccc------ccchHHHHHH----hcCcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCc Confidence 999999876543322111 1111222111 123456788999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....+|+++.+| .+||++|++++|++.++.+++++||+|+++.+++|++.+++|++|+.|++..+..+.........| T Consensus 71 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (411) T protein:vir:81 71 IVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGPQLQALWILPSQYVTIVVDDRGLLGEKNAIWY 150 (411) T ss_pred eeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCceEEEEEECCceEEEEEcCcccccccceEEE Confidence 7777777777766 589999999999999999999999999999999999999999999999999887665444444445 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~ 239 (457) .+... ..+....|+++||||++++.+.++++|+||+..+...|....++.+++.++|+||+.|+++++++..+++++++ T Consensus 151 ~~~~~-~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~ 229 (411) T protein:vir:81 151 RYNDP-YDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARD 229 (411) T ss_pred EEEec-CCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHH Confidence 44333 23455679999999999888889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH Q lcl|Aclame:pro 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 240 ~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~ 319 (457) +++++|.+.+.+.+|+|+++++++|++|+++++++.|+||+|.++++.++||++|||||.+||..+++++ ++.+++.+ T Consensus 230 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--~n~e~~~~ 307 (411) T protein:vir:81 230 RLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSY--ASAEAQNL 307 (411) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--hhHHHHHH Confidence 9999999999999999999999999999999999999999999999999999999999999998877655 55789999 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .|+++||.|++++||++|+++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|+ T Consensus 308 ~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~g-- 385 (411) T protein:vir:81 308 AFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDY-- 385 (411) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC-- Confidence 9999999999999999999999998775 5678999999999999999999999999999999999999999999987 Q ss_pred CceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) ||++++++|+++++...+... ++++. T Consensus 386 gD~~~~~~n~~pl~~~~~~~~-kgGd~ 411 (411) T protein:vir:81 386 GNNLMANGNYIPLSMLGANYG-KGGDS 411 (411) T ss_pred CCeeeeccCccchhhhhhhhc-cCCCC Confidence 999999999999876543211 11110 No 10 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=1.9e-94 Score=534.35 Aligned_cols=439 Identities=20% Similarity=0.290 Sum_probs=358.2 Q ss_pred hhhhhhcccccccc-ccccccccccc-chhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 3 FWSALFGRGHSPAL-DAAEGRAWEPY-DPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 3 ~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||+.+++.....+. .......|... ......+++.+.++..|+.+.|+++++|++||++||++||++|+++|++.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g 80 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 88866553222221 11112222222 22223456677788999999999999999999999999999999999876655 Q ss_pred -eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 -RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 -~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|.++.|+.+||++|++++||+.++.+++++||+|+++.++ .|++.+|+|++|++|++..+.++... +. T Consensus 81 ~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~----y~ 156 (454) T protein:vir:93 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF----YR 156 (454) T ss_pred ccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEE----EE Confidence 4456788888999999999999999999999999999999999987 48999999999999999887665432 22 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |......+.+....|+++||||+++..+.++++|+||+..+...|.+..++++++.++|+||++|+++++++..+++++. T Consensus 157 ~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~ 236 (454) T protein:vir:93 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) T ss_pred EEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHH Confidence 33333333445678999999999988778999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.+++ .|+|+++||++|++|+++++++.|+||+|++++++++||++|||||.+||...++++ ++.+++. T Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--sn~e~~~ 313 (454) T protein:vir:93 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALE 313 (454) T ss_pred HHHHHHHHHHhcc-cccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcc--hhHHHHH Confidence 9999999999877 789999999999999999999999999999999999999999999999998876654 5589999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) +.|+++||.|++..||++||++|++.. +.+++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||++| T Consensus 314 ~~f~~~~l~P~~~~ie~~ln~~L~~~~---~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~g-- 388 (454) T protein:vir:93 314 QQYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG-- 388 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---CcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC-- Confidence 999999999999999999999998754 357999999999999999999999999999999999999999999987 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ||++++++|+.+++.....+....+...+...... + ++..+.+..+...+++.|+ T Consensus 389 gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~d~~~~~~e~~~d~ 443 (454) T protein:vir:93 389 GDALYLQQQNYSLEALSRRDAREDPFASSGKTASV--P--QAVAASDGNKAITETEHDA 443 (454) T ss_pred CCeeeeccCccchHhhhccCcccCCCCCCccCCCC--C--CCCCCCCCCCCccCCccch Confidence 99999999999988766554333322222111111 1 1222223333334444444 No 11 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=4.3e-94 Score=532.43 Aligned_cols=416 Identities=23% Similarity=0.323 Sum_probs=351.4 Q ss_pred Cchhhhhhcccccccccccc---cccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEec Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAE---GRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKR 77 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 77 (457) ||||++||++.......... ....+..+..++...+. ..+..|+.+.++++++|++||++||++||++|++++++. T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~ 79 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGI-KLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDK 79 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccc-cCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecC Confidence 99999999876654321111 11122222333333332 234568899999999999999999999999999999754 Q ss_pred cCceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 78 GGTRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 78 ~~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) +.. .+|+++.+| .+||++|++++|++.++.+++++||+|++|.|+ .|++.+++|++|++|++..+.++...... T Consensus 80 ~~~----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~ 155 (422) T protein:vir:13 80 EEY----KEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLS 155 (422) T ss_pred ccc----ccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccc Confidence 332 344455555 699999999999999999999999999999987 48999999999999999988776554444 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCH Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSE 235 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 235 (457) ...|.+.. ..+....|+++||||++.+.+.++++|+||+..+..+|....++++++.++|+||++|+|+++++..+++ T Consensus 156 ~~~y~~~~--~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~ 233 (422) T protein:vir:13 156 KVWYVVTD--KNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDE 233 (422) T ss_pred eEEEEEEe--CCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCH Confidence 44444433 3455678999999999998888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 236 EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 236 e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) ++.++++++|++.+++..|+++++++++|++|++++++++|+||+|.+++++++||++|||||.+||....+++ ++.+ T Consensus 234 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~--sn~e 311 (422) T protein:vir:13 234 KAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATF--NNLT 311 (422) T ss_pred HHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHH Confidence 99999999999999999999999999999999999999999999999999999999999999999998776654 5579 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) ++...|+++||.|++.+||++||++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+ T Consensus 312 ~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~ 391 (422) T protein:vir:13 312 EQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPV 391 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999886 46789999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCccCCCCCCCCC Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) +| ||++++|+|+++++...+.+. +++ ++++. T Consensus 392 ~g--gD~~~~~~n~~~l~~~~~~~~--~~g------~~~g~ 422 (422) T protein:vir:13 392 EG--GDRLLVNGNMIPIEMAGEQYK--KGG------EKGGK 422 (422) T ss_pred CC--cCeeeeccCccchhhcccccc--cCC------CcCCC Confidence 87 999999999999887764321 111 11111 No 12 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=3.7e-94 Score=532.79 Aligned_cols=424 Identities=27% Similarity=0.400 Sum_probs=351.0 Q ss_pred hhhhhhc---ccccccccc---cccccccccchhh--hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 3 FWSALFG---RGHSPALDA---AEGRAWEPYDPSI--YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 3 ~~~~l~~---~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |++.|++ +......+. ..++.++..++.+ ..+++.+.++..|+.+.|+++++|++||++||++||++|+++| T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 4443332 221111111 1122232222222 2345566688899999999999999999999999999999999 Q ss_pred EeccCc-eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 75 SKRGGT-RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 75 ~~~~~~-~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) ++.+++ +....+|+++.+| .+||++|++++||+.++.+++++||+|++|.+++|++.+++||+|.+|++..+..+... T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~~~~L~~l~p~~v~~~~~~~g~~~ 160 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGRPAALDFLLPSRVDLECDENGRLK 160 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcceEEEEcCCCeEE Confidence 876544 4455667776666 68999999999999999999999999999999999999999999999999887654322 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) |.+ ....+..+.|+++||||+++++ .++++|+||+..+...|....++++++.++|+||+.|+++++++.. T Consensus 161 ------y~~--~~~~g~~~~~~~~eVih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~ 231 (434) T protein:vir:43 161 ------YFY--TTKKGARREIERTNMLHIPAFT-LDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRI 231 (434) T ss_pred ------EEE--EecCceEEEEccccEEEecCcC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCC Confidence 222 2234556789999999999874 6789999999999999999999999999999999999999999999 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGS 312 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~ 312 (457) +++++.+++++.|++ +.+..|+|+++|+++|++|+++++++.|+||+|.++++.++||++|||||.+||....++.+++ T Consensus 232 l~~e~~~~~r~~~~~-~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s 310 (434) T protein:vir:43 232 LQPAQREEFREYVKS-VSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGT 310 (434) T ss_pred CCHHHHHHHHHHHHH-hcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccc Confidence 999999999988865 5677899999999999999999999999999999999999999999999999999888888888 Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Q lcl|Aclame:pro 313 GLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMT 392 (457) Q Consensus 313 ~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~ 392 (457) +.+++...|+++||.|++.+||++||++|+++.+..+++++||++.+++.|.+++++++.+++++|++|+||+|+++|+| T Consensus 311 ~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~ 390 (434) T protein:vir:43 311 GLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLP 390 (434) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Confidence 89999999999999999999999999999998887778999999999999999999999999999999999999999999 Q ss_pred CCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 393 PLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 393 p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) |+|| ||++++|+|+++++...+.+..+...+.........+++| T Consensus 391 p~~g--gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 391 ELPG--GDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred CCCC--CCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 9987 9999999999999877655444332221111111111111 No 13 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=2.6e-93 Score=528.21 Aligned_cols=432 Identities=30% Similarity=0.442 Sum_probs=353.4 Q ss_pred Cch-hhhhhcccccccccccccccccccchhhh--cccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEec Q lcl|Aclame:pro 1 MGF-WSALFGRGHSPALDAAEGRAWEPYDPSIY--NLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKR 77 (457) Q Consensus 1 Mg~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 77 (457) |.- +.+++++...... ...+...+..++.++ ..+..+.++..|+.+.|+++++|++||++||++||++||+++++. T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~ 79 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFL-KWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTK 79 (437) T ss_pred CCcchhhhhhhhHHhhh-hhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEc Confidence 773 4555555443322 122223333333332 233445677889999999999999999999999999999999876 Q ss_pred cCc-eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 78 GGT-RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 78 ~~~-~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) +++ +....+|.++.+| .+||++|++++|++.++.+++++||+|++|.|++|++.+|+|++|..|++..+..+... T Consensus 80 ~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g~~~~L~~l~p~~v~i~~~~~g~~~--- 156 (437) T protein:vir:10 80 PDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAGVLIGLELMLPQRTTVKRLTSGALQ--- 156 (437) T ss_pred CCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCcceEEEECCCCeEE--- Confidence 654 3445566666655 69999999999999999999999999999999999999999999999999887655332 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCH Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSE 235 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 235 (457) |.+.. ..+....++++||||+++++ .++++|+||+..+..+|....++.+++.++|+||++|+++++++..+++ T Consensus 157 ---y~~~~--~~g~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~ 230 (437) T protein:vir:10 157 ---YTYRN--VDGTVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQK 230 (437) T ss_pred ---EEEEe--cCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCH Confidence 22222 23445689999999999876 5789999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 236 EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 236 e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) ++.++++++|.+.+++..|+|+++|+++|++|+++++++.|+||+|++++++++||++|||||.+||....+++++++.+ T Consensus 231 e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e 310 (437) T protein:vir:10 231 EKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIE 310 (437) T ss_pred HHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLP 395 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~ 395 (457) ++.+.|+++||.|++..||++|+++||++.+....+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++ T Consensus 311 ~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ 390 (437) T protein:vir:10 311 QQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMG 390 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999999999999999998887778999999999999999999999999999999999999999999998 Q ss_pred CCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) |+ ++.+++++|+++++...+..+..... ... . +.+..+++..++.++ T Consensus 391 gg-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 391 GN-AAVLTVQSALLPIDKLGEHTTATAAQ-DAL---K-AWLYQEEKTRATQER 437 (437) T ss_pred CC-cceEeecCcccchhhccCcCCCcchh-ccc---c-ccCCCCCCCCccccC Confidence 63 45677899999887765443322111 000 0 111111111111111 No 14 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=5.4e-93 Score=526.42 Aligned_cols=422 Identities=24% Similarity=0.386 Sum_probs=345.5 Q ss_pred Cchhhhhhcccccc-cccccccccccccchhhh-cccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSP-ALDAAEGRAWEPYDPSIY-NLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) ||||+|+.....++ ......+..+++..+... .....+.++..|+.+.|+++++|++||++||++||++|+++|++.+ T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecC Confidence 99999853222121 122222223333333222 2334566788899999999999999999999999999999999888 Q ss_pred CceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 79 ~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) ++.....+|+++.+| .+||++|++++||+.++.+++++||+|+++.+++|++.+|+|++|+.|++..+..+.. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g~~~~L~~l~~~~v~v~~~~~g~~------ 160 (432) T protein:vir:81 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDPKGNT------ 160 (432) T ss_pred CcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCceEEEECCCCcE------ Confidence 777776777777666 6899999999999999999999999999999988999999999999999988765532 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|.+.. ..+....+++++|||+++++ .++++|+||+..+...|....++++++.++|+||++|+++++++..+++++ T Consensus 161 ~y~~~~--~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~ 237 (432) T protein:vir:81 161 AYRYRR--TDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQ 237 (432) T ss_pred EEEEEe--cCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHH Confidence 222222 23455689999999999775 567999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc-ccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS-WGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~-~~~~~e~ 316 (457) ++++++++. +..|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.+||....+++ ++++.|+ T Consensus 238 ~~~~~~~~~----~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq 313 (432) T protein:vir:81 238 YDSFAKKVS----GSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHHHHHh----hhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHH Confidence 888877664 56788999999999999999999999999999999999999999999999998877665 4577899 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) +.+.|+++||.||++.||++|+++|+++.+..+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||++| T Consensus 314 ~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g 393 (432) T protein:vir:81 314 QQLGFLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGG 393 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999988877789999999999999999999999999999999999999999999986 Q ss_pred CCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccccccc Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDD 455 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (457) + ++.+++++|+++++........ +++.....+++ .+++. T Consensus 394 ~-~~~~~~~~~~~pl~~~~~~~~~--~~~~~~~n~~~-----------------~~~~~ 432 (432) T protein:vir:81 394 N-AAVLTVQSAMVPLDSIGLQASP--EPASGLGNQQQ-----------------DKVSK 432 (432) T ss_pred C-cceEeecCcccchhhhccCCCC--CCCCCCCCccc-----------------ccccC Confidence 3 5777789999887665432110 00000000000 00000 No 15 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=5e-93 Score=526.60 Aligned_cols=422 Identities=24% Similarity=0.392 Sum_probs=346.2 Q ss_pred Cchhhhhhccccccc-ccccccccccccchhhhc-ccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA-LDAAEGRAWEPYDPSIYN-LGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) ||||+++..-+.++. .+...+..+++....... +...+.++..|+.+.|+++++|++||++||++||++|+++|++.+ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecC Confidence 999998644333322 223333333443333322 334566788899999999999999999999999999999999888 Q ss_pred CceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 79 ~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) ++.....+|+++.+| .+||++|++++||+.++.+++++||+|+++++++|++.+|+||+|++|++..+..+.. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~~~~v~v~~~~~g~~------ 160 (432) T protein:vir:10 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDTKGNT------ 160 (432) T ss_pred CCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCceEEEEcCCCcE------ Confidence 777666677777665 6999999999999999999999999999999999999999999999999998765542 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|.+.. ..+....|++++|||+++++ .++++|+||+..+.+.|....++++++.++|+||++|+++++++..+++++ T Consensus 161 ~y~~~~--~~g~~~~~~~~~iih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~ 237 (432) T protein:vir:10 161 AYRYRR--TDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQ 237 (432) T ss_pred EEEEEe--cCceEEEEcCccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHH Confidence 222222 23455789999999999875 578999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc-ccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS-WGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~-~~~~~e~ 316 (457) +++++++|. +..|++++++|++|++|++++++++|+||+|++++++++||++|||||.+||....+++ ++++.|+ T Consensus 238 ~~~~~~~~~----~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~ 313 (432) T protein:vir:10 238 YDSFAKKVS----GSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHHHHHh----hhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHH Confidence 888777664 56788999999999999999999999999999999999999999999999998877554 5677899 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) +.+.|+++||.|+++.||++|+++|+++.+...++++||++.+++.|.+++++++++++++|++|+||+|+++|+||++| T Consensus 314 ~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g 393 (432) T protein:vir:10 314 QQLGFLSMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGG 393 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999988877789999999999999999999999999999999999999999999986 Q ss_pred CCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccccccc Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDD 455 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (457) + ++.+++++|+++++....... + +++....++++ .+++. T Consensus 394 ~-~~~~~~~~~~~pl~~~~~~~~-~-~~~~~~~~~~~-----------------~~~~~ 432 (432) T protein:vir:10 394 N-AAVLTVQSAMVPLDSIGLQAS-P-EPASGLGNQQQ-----------------DKVSK 432 (432) T ss_pred C-cceEeecCcccchhhhcccCC-C-CCCCCCCCccc-----------------ccccC Confidence 3 566778999888776532211 0 00000000000 00000 No 16 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=7.4e-93 Score=525.68 Aligned_cols=422 Identities=24% Similarity=0.392 Sum_probs=346.3 Q ss_pred Cchhhhhhccccccc-ccccccccccccchhhhc-ccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA-LDAAEGRAWEPYDPSIYN-LGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) ||||+++..-+..+. +.......+++....... +...+.++..|+.+.|+++++|++||++||++||++|+++|++.+ T Consensus 7 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRTP 86 (432) T ss_pred CchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEecC Confidence 999998744333322 223333334443333322 334566788999999999999999999999999999999999887 Q ss_pred CceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 79 ~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) ++.....+|+++.+| .+||++|++++||+.++.+++++||+|+++++++|++.+|+||+|+.|++..+..+.. T Consensus 87 ~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~p~~v~v~~~~~g~~------ 160 (432) T protein:vir:97 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDTKGNT------ 160 (432) T ss_pred CCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCcceEEEEcCCCcE------ Confidence 776666677776666 6899999999999999999999999999999999999999999999999988765532 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|.+.. ..+....+++++|||+++++ .++++|+||+..+...|....+++++..++|+||++|+++++++..+++++ T Consensus 161 ~y~~~~--~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~e~ 237 (432) T protein:vir:97 161 AYRYRR--TDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQ 237 (432) T ss_pred EEEEEe--cCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCHHH Confidence 232222 23455789999999999865 577999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc-ccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS-WGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~-~~~~~e~ 316 (457) +++++++| .+..|++++++|++|++|+++++++.|+||+|++++++++||++|||||.+||..+.+++ +++++|+ T Consensus 238 ~~~~~~~~----~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~ 313 (432) T protein:vir:97 238 YDSFSKKV----SGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHHHHH----hhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHH Confidence 88776655 466788999999999999999999999999999999999999999999999998876655 4577899 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) +.+.|+++||.|+++.||++|+++|+++.+..+++++||++.+++.|.+++++++.+++++|++|+||+|+++|+||++| T Consensus 314 ~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g 393 (432) T protein:vir:97 314 QQLGFLTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGG 393 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999988877789999999999999999999999999999999999999999999986 Q ss_pred CCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccccccc Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDD 455 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (457) + ++.++++.|+++++....+. .+.+ +.....+++.+.. . T Consensus 394 ~-~~~~~~~~~~~pl~~~~~~~-~~~~-~~~~~~~~~~~~~-----------------~ 432 (432) T protein:vir:97 394 N-AAVLTVQSAMVPLDSIGLQA-SPEP-ASGLGNQQQDKVS-----------------K 432 (432) T ss_pred C-cceEeecccccchhhhcccC-CCCC-CCCCCCccccccc-----------------C Confidence 2 56667899998877664321 1000 0000000000000 0 No 17 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=1.2e-92 Score=524.54 Aligned_cols=405 Identities=24% Similarity=0.404 Sum_probs=341.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) +.||++||++........ +.........+.+.++..|+.+.|+++++|++||++||++||++|++++++.+++ T Consensus 16 ~~~~~~lf~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~ 88 (424) T protein:vir:45 16 RVLLDALFRSKSLENPST-------PITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKGK 88 (424) T ss_pred hHHHHhhccccCCCCCcc-------ccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCCc Confidence 889999997654322111 1112222344566678889999999999999999999999999999999988878 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|+++.+| .+||++|++++||+.++.+++++||+|++|.|+ .|++.+++|++|..|++..... . .. T Consensus 89 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~-~------~~ 161 (424) T protein:vir:45 89 VEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGG-R------YT 161 (424) T ss_pred eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCC-e------EE Confidence 7777777877766 589999999999999999999999999999987 5899999999999998875432 1 12 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+... .....|+++||||++++++ ++++|+||+..+.+.|....++++++.++|+||++|+++++++..+++++. T Consensus 162 y~~~~~---~~~~~~~~~eVih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~ 237 (424) T protein:vir:45 162 YGLYNE---YGAFAISPDDMIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESW 237 (424) T ss_pred EEEEec---CceEEECcccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHH Confidence 333222 2235799999999998764 789999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccc-cccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGV-DNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ 317 (457) Q Consensus 239 ~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~ 317 (457) ++++++|++.+.+. .|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.+||....+++ ++.|++ T Consensus 238 ~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--sn~eq~ 315 (424) T protein:vir:45 238 GWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATF--SNISAQ 315 (424) T ss_pred HHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc--ccHHHH Confidence 99999999999875 589999999999999999999999999999999999999999999999998876654 558999 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) .+.|+++||.|+++.||++||++|+++.+. .+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||++| T Consensus 316 ~~~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~g 395 (424) T protein:vir:45 316 AIQFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEG 395 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 999999999999999999999999998875 4578999999999999999999999999999999999999999999987 Q ss_pred CCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) ||++++|+|+++......+ +...++++++ T Consensus 396 --gD~~~~~~n~~~~~~~~~~---------------------~~~~~~~~~~ 424 (424) T protein:vir:45 396 --LDEMLVSVNAANPAGDFKP---------------------PKNDEGKTNE 424 (424) T ss_pred --cceeeecccccccccccCC---------------------CCCCCCCCCC Confidence 9999999998652111000 0000000000 No 18 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=5.9e-92 Score=520.75 Aligned_cols=445 Identities=17% Similarity=0.194 Sum_probs=346.1 Q ss_pred Cchhhhhhc-ccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFG-RGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |=+-+ | ...+|..........+.+.+... .+........+....++++++|++||++||++||++|++++++.++ T Consensus 1 ~~~~~---~~~~~~p~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~ 76 (518) T protein:vir:10 1 MLLAN---GQTLSAPAMAELSPQMQDSYYYAPA-VGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred CcccC---ceeecCchhhhhhhhhhcccccccc-cceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 21111 1 12222211111111111111110 1111111223344568899999999999999999999999999888 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) +.....+|.++.++.+||++|++++||+.++.+++++||+|+++.|+. |++.+++|++|.+|++..+...+... T Consensus 77 ~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~----- 151 (518) T protein:vir:10 77 TETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYE----- 151 (518) T ss_pred CceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEE----- Confidence 888888999999999999999999999999999999999999999974 89999999999999998876654322 Q ss_pred EEEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 159 YDIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 159 y~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) |.+.... .......|+++||||++++++.+..+|+||+..+...|....++++++.++|+||++|+++++++..+++++ T Consensus 152 y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~ 231 (518) T protein:vir:10 152 YYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAA 231 (518) T ss_pred EEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHH Confidence 2222222 233456899999999999988777799999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ 317 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~ 317 (457) .+++++.|++.++|..|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||..+.+++ ++.|++ T Consensus 232 ~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~--sn~eq~ 309 (518) T protein:vir:10 232 QQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATF--SNISAQ 309 (518) T ss_pred HHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCc--hhHHHH Confidence 999999999999999999999999999999999999999999999999999999999999999998876654 558999 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) .+.|+++||.|++..||++||++|++..+. ..+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++++ T Consensus 310 ~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~-~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~ 388 (518) T protein:vir:10 310 MRAFYRDTMAIPIARIQSAMDKYVGQYWVR-KNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDP 388 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999999999987764 4689999999999999999999999999999999999999999999999 Q ss_pred CCceeeecccccccccccccccccCCCc--cCCCCCCC-CCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPA--IDPPAEEP-ADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +||++++++|+++++..........+.. ..+..... ..++.+...+...+...+..+++. T Consensus 389 ~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (518) T protein:vir:10 389 KADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSPTNSDRSTDS 451 (518) T ss_pred CCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCcccccccccc Confidence 9999999999999876554332211110 00110000 011111121111111111111111 No 19 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=3.2e-92 Score=522.18 Aligned_cols=412 Identities=28% Similarity=0.484 Sum_probs=347.7 Q ss_pred chhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCce Q lcl|Aclame:pro 2 GFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTR 81 (457) Q Consensus 2 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 81 (457) =||++||+|..+....... .. ......+..+.++..|+.+.++++++|++||++||+++|++|++++++.+++. T Consensus 1 ~~f~~~f~r~~~~~~~~~~----~~--~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~ 74 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPA----EL--AEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLK 74 (413) T ss_pred CccchhhccCccCCccchH----HH--HHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 2456788875544332110 11 11122334456778899999999999999999999999999999999988887 Q ss_pred eeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 82 KEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 82 ~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ....+|+++.+| .+||++|++++|++.++.+++++||+|++++++.|++.+++|++|++|++..+..+.. .|. T Consensus 75 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g~~~~L~~l~~~~v~~~~~~~~~~------~y~ 148 (413) T protein:vir:48 75 TRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPKLNSQWQP------VYQ 148 (413) T ss_pred eeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCCcEEEEEEEcCceEEEEEcCCceE------EEE Confidence 777777777777 5899999999999999999999999999999999999999999999999887765432 233 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR 240 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~ 240 (457) +.. ..+....|+++||||+++++ .++++|+||+..+..+|....++.+++.++|+||+.|+++++++..+++++.++ T Consensus 149 ~~~--~~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~ 225 (413) T protein:vir:48 149 VTF--PDGSVDVLTQDEIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYER 225 (413) T ss_pred EEe--cCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHH Confidence 222 23445679999999999876 467999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH Q lcl|Aclame:pro 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) Q Consensus 241 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~ 320 (457) +++.|++.+++..|+|+++++++|++|++++.+++|+||+|.+++++++||++|||||.+||....++ +++.+++... T Consensus 226 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t--~~n~e~~~~~ 303 (413) T protein:vir:48 226 LKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRAT--FNNIEELGLG 303 (413) T ss_pred HHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCC--cccHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999876554 4568999999 Q ss_pred HHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Q lcl|Aclame:pro 321 FTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) Q Consensus 321 ~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd 400 (457) |+++||.|++++||++||++|+++.+..+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| || T Consensus 304 f~~~~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~g--gD 381 (413) T protein:vir:48 304 FINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPG--GD 381 (413) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--cc Confidence 9999999999999999999999988877789999999999999999999999999999999999999999999987 99 Q ss_pred eeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccc Q lcl|Aclame:pro 401 KYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGET 451 (457) Q Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457) ++++|+|++++....+....+. ++++.++..+ T Consensus 382 ~~~~~~n~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 413 (413) T protein:vir:48 382 VYLTPMNMTTSPSAGDDNGKKK-------------------ESGDADKTAS 413 (413) T ss_pred eeeccccccccccccccCCCCC-------------------CCCCccccCC Confidence 9999999877664432211100 0111111111 No 20 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=6.5e-92 Score=520.49 Aligned_cols=445 Identities=17% Similarity=0.194 Sum_probs=344.4 Q ss_pred Cchhhhhhc-ccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFG-RGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |=+=+ | ...+|+.........+++.+. +..+........+....++++++|++||++||++||++||+++++.++ T Consensus 1 ~~~~~---~~~~~~p~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~ 76 (518) T protein:vir:78 1 MLLAN---GQTLSAPAMAELSPQMQDSYYYA-PAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred CcccC---ceeeccchhhhhhhhhhhccccc-ceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 21111 1 111111111111000111100 001111111223344568899999999999999999999999999888 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) +.....++.++.|+.+||++|++++||+.++.+++++||+|+++.|+. |++.+|+|++|.+|++..+..++.. . T Consensus 77 ~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~---~-- 151 (518) T protein:vir:78 77 TETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRY---E-- 151 (518) T ss_pred ccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEE---E-- Confidence 888888889999999999999999999999999999999999999974 8999999999999999888665432 1 Q ss_pred EEEeee-cccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 159 YDIDAD-GNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 159 y~~~~~-~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) |.+... ........|+++||||++++++.+..+|+||+..+...|....++.+++.++|+||++|+++++++..+++++ T Consensus 152 y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~ 231 (518) T protein:vir:78 152 YYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEA 231 (518) T ss_pred EEEEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHH Confidence 222222 2234556799999999999988777799999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ 317 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~ 317 (457) .+++++.|++.++|..|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.+||..+++++ ++.+++ T Consensus 232 ~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~--sn~e~~ 309 (518) T protein:vir:78 232 QQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATF--SNISAQ 309 (518) T ss_pred HHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCc--hhHHHH Confidence 999999999999999999999999999999999999999999999999999999999999999998876554 568999 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) .+.|+++||.|++.+||++||++|++..+. ..+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++++ T Consensus 310 ~~~f~~~tL~P~~~~ie~eln~~L~~~~~~-~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~ 388 (518) T protein:vir:78 310 MRAFYRDTMAIPIARIQSAMDKYVGQYWVR-KNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDP 388 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC-cceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999999999987765 5689999999999999999999999999999999999999999999999 Q ss_pred CCceeeecccccccccccccccccCCC--ccCCCCCCC-CCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPP--AIDPPAEEP-ADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +||++++++|+++++..........+. ...+..... ..++.+..++...+...+...++. T Consensus 389 ~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (518) T protein:vir:78 389 KADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSPTNSDRSTDS 451 (518) T ss_pred CCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCCCcccccccccc Confidence 999999999999987665432211111 000111000 001111111111111111111111 No 21 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=6.2e-92 Score=520.63 Aligned_cols=405 Identities=25% Similarity=0.422 Sum_probs=340.3 Q ss_pred Cchhhhhhccccccccccccccc-ccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRA-WEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) =|||+++..++............ ..+. ....+.++..|+.+.|+++++|++||++||++||+||+++|++.++ T Consensus 14 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~ 87 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLVTPNQGSQTGPV------SAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQN 87 (424) T ss_pred CchHHHHHhhhccccccccccccccccc------ccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecC Confidence 57888776544332222111111 1111 1122335667899999999999999999999999999999987654 Q ss_pred ce--eeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 80 TR--KEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 80 ~~--~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) +. .....|+++.+| .+||+.|++++||+.++.+++++||+|++|.|+ .|++.+|+|++|.+|++..+.. . . T Consensus 88 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~~-~----~ 162 (424) T protein:vir:18 88 DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGK-K----V 162 (424) T ss_pred CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCC-e----E Confidence 43 233456666655 689999999999999999999999999999987 5889999999999999876532 1 1 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CC Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MS 234 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~ 234 (457) .|.+.. .+....|+++||||+++++. ++++|+||+..+...|....++++++.++|+||++|+++++++.. ++ T Consensus 163 --~y~~~~---~g~~~~~~~~eIih~r~~~~-dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~ 236 (424) T protein:vir:18 163 --VYRYQR---DSEYADFSQKEIFHLKGFGF-TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLT 236 (424) T ss_pred --EEEEEe---CCeEEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCC Confidence 233322 23456899999999998774 679999999999999999999999999999999999999999865 79 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +++.+++++.|++.+++ .|+|++++|++|++|+++++++.|+||+|.++++.++||++|||||.+||...++++++++. T Consensus 237 ~e~~~~~~~~~~~~~~g-~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~ 315 (424) T protein:vir:18 237 EQQRSQVEENFKEIAGG-PVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGI 315 (424) T ss_pred HHHHHHHHHHHHHHhCC-cccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccH Confidence 99999999999987755 67899999999999999999999999999999999999999999999999999888888889 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) |++.+.|+++||.|+++.||++|+++|+++.+..+.+++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+ T Consensus 316 eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi 395 (424) T protein:vir:18 316 EQQNLGFLQYTLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPL 395 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999988878899999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) || ||++++++|+++++...........++ T Consensus 396 ~g--GD~~~~~~n~~~l~~~~~~~~p~~~ga 424 (424) T protein:vir:18 396 PG--GDVAMRQSQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred CC--cCeeeeccCccchHhhhccCCCccCCC Confidence 87 999999999999876543221111111 No 22 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=6.6e-92 Score=520.47 Aligned_cols=406 Identities=32% Similarity=0.534 Sum_probs=338.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|+|++..+........ ........+...+..++.+.|+++++|++||++||+++|++|++++++.+++ T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 73 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKIS-------GIPSPAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNV 73 (409) T ss_pred CchhhhhhcCCCccccccccc-------ccccccchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc Confidence 999999999865443222111 1111223344566778999999999999999999999999999999877665 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ec-CCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-WA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~-~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) + ...|+++.+| .+||++|++++|++.++.+++++||+|++|. ++ +|++.+|+|++|++|++....+..... ... T Consensus 74 ~--~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~-~~~ 150 (409) T protein:vir:84 74 R--IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDW-IEP 150 (409) T ss_pred c--cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceE-EEE Confidence 4 3345555555 6999999999999999999999999999875 44 689999999999999987665443221 111 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|. .. .+.|+++||||++++++.+.++|+||+..+...|....++.+++.++|+||+.|+++|+++..+++++ T Consensus 151 ~~~-----~~--g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~ 223 (409) T protein:vir:84 151 VYR-----ID--GKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQ 223 (409) T ss_pred Eec-----CC--ceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHH Confidence 121 11 24689999999999998888899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ 317 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~ 317 (457) .++++++|.+.+ .|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.+||....++.++++.|++ T Consensus 224 ~~~~~~~~~~~~---~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~ 300 (409) T protein:vir:84 224 VKQTQKQWIQSH---HNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQ 300 (409) T ss_pred HHHHHHHHHHHh---ccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHH Confidence 999999998765 46789999999999999999999999999999999999999999999999998888888889999 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) .+.|+++||.|+++.||++|+++|. .+.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+|| T Consensus 301 ~~~f~~~~l~P~~~~ie~~l~~~L~-----~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~g- 374 (409) T protein:vir:84 301 GINFVRHTLLPWLRCIEQALDTFLP-----RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPE- 374 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 9999999999999999999999883 3568999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ||++++|+|+++++.....++...+. +....+++. T Consensus 375 -gD~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~gn~ 409 (409) T protein:vir:84 375 -GDIHLQPMNFVPLGYVPPEEPAQEPQ---PNSATEGNK 409 (409) T ss_pred -cceeeecccccccccCCccccCcCCC---CCCccCCCC Confidence 99999999999988765544331111 000000000 No 23 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=8.9e-92 Score=519.76 Aligned_cols=406 Identities=25% Similarity=0.332 Sum_probs=347.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |- |++.|++..++. +..++.+..+.+.+.++..|+.++|+++++|++||++||++||++|++++++.+++ T Consensus 1 m~-f~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 70 (409) T protein:vir:10 1 ML-FRKGFKNQSQEI---------SIDDKKILEWLGINPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGI 70 (409) T ss_pred Cc-ccccccCcCCCC---------CCChHHHHHHhcCCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCe Confidence 76 556666543321 12223344455556678889999999999999999999999999999999876655 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) . ...+|+++.+| .+||+.|++++|++.++.+++++||+|+++.++ .|++.+++|++|++|++..+..+......... T Consensus 71 ~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~ 149 (409) T protein:vir:10 71 K-RVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVW 149 (409) T ss_pred e-eccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEE Confidence 4 44556666555 699999999999999999999999999999987 58999999999999999887665444433334 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ...+....|+++||||++++++ ++++|+||+..+...|....++.+++.++|+||+.|+++++++..+++++. T Consensus 150 y~~~--~~~g~~~~~~~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~ 226 (409) T protein:vir:10 150 YLYT--DDLGQRHKFMSDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLNPEAE 226 (409) T ss_pred EEEE--eCCceeEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHH Confidence 4433 3445567899999999998874 679999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+.+..|+++++++++|++|++++.++.|+||+|.++++.++||++|||||.+||....++ +++.+++. T Consensus 227 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~~~e~~~ 304 (409) T protein:vir:10 227 EVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRAT--HSNITEQN 304 (409) T ss_pred HHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc--cccHHHHH Confidence 9999999999999999999999999999999999999999999999999999999999999999876655 45579999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) +.|+++||.|+++.||++||++|++..+. .+.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||++| T Consensus 305 ~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~g- 383 (409) T protein:vir:10 305 REFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEG- 383 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999988775 5678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) ||++++|+|+++++...+... ++++. T Consensus 384 -gD~~~~~~n~~~~~~~~~~~~-kgGe~ 409 (409) T protein:vir:10 384 -GDVLLINGNMIPVKMAGEQYS-KGGEK 409 (409) T ss_pred -cCeeeeccCccchhhcccccc-ccCCC Confidence 999999999999876643211 11110 No 24 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=6.1e-92 Score=520.64 Aligned_cols=412 Identities=28% Similarity=0.409 Sum_probs=342.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |+|+++|+++..+.... +.. .......+.+.++..|+.++++++++|++||++||++||+||+++|++.+++ T Consensus 1 m~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g 72 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVN------WQV--VPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENG 72 (419) T ss_pred CcchhhhccCCcccccc------ccc--cccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC Confidence 99999887764432211 111 1111223456677889999999999999999999999999999999977665 Q ss_pred e-eeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 R-KEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 ~-~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) . ....+|.++.+| .+||++|++++||+.++.+++++||+|++|+|+. |++.+|+|++|++|++..+.++.. T Consensus 73 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~------ 146 (419) T protein:vir:57 73 GREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMP------ 146 (419) T ss_pred ceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceE------ Confidence 3 444677777666 6899999999999999999999999999999885 899999999999999987665432 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC----CC Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG----TM 233 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~----~~ 233 (457) .|.+.. ....+++++|||+++++ .++++|+||+..+...|....++.+++.++|+||++|+++|+.+. .. T Consensus 147 ~y~~~~-----~~~~~~~~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~ 220 (419) T protein:vir:57 147 YYDIPS-----IGEILPMRMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIA 220 (419) T ss_pred EEEEcC-----CceEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCccc Confidence 233321 12468999999999875 577999999999999999999999999999999999999999854 45 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++++.++++++|.+.+++..|+|+++++++|++|++++++++|+||+|++++++++||++|||||.+||....+++ ++ T Consensus 221 ~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--sn 298 (419) T protein:vir:57 221 SQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTN--NN 298 (419) T ss_pred CHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCcc--cc Confidence 7899999999999999999999999999999999999999999999999999999999999999999998776554 55 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .|++.+.|+++||+|++..||++|+++|+++.+..+++++||++.+++.|.+++++++++++++|++|+||+|+++|+|| T Consensus 299 ~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p 378 (419) T protein:vir:57 299 IEHQGLQYVIYTMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTP 378 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 89999999999999999999999999999988877889999999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) +|| ||++++|+|++++....+.+.+..+...+. .... ...| T Consensus 379 ~~g--gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~ 419 (419) T protein:vir:57 379 IPG--GDKYLTPLNMVDSKALTGIGKATPQQLKDI----EAIL-CTRN 419 (419) T ss_pred CCC--cCeeeeccccccccccccccCCCcccCcch----hhhh-hccC Confidence 987 999999999988665544322111100000 0000 0011 No 25 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=8.9e-92 Score=519.75 Aligned_cols=414 Identities=27% Similarity=0.436 Sum_probs=340.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |.++.+++++. .. . .....|+. .......+.+.++..|+.+.|+++++|++||++||++||++||++|++.+++ T Consensus 1 m~~~~~~~~~~-~~-~--s~~~~w~~--~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g 74 (421) T protein:vir:10 1 MFIPQMFEGKK-RS-V--SGGGFWEA--MLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNG 74 (421) T ss_pred CCCcchhcccc-cc-c--CcchhhHH--HhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC Confidence 99776554432 22 1 11111111 1112233566678899999999999999999999999999999999876544 Q ss_pred -eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 -RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 -~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) +....+|+++.+| .+||++|++++||+.++.+++++||+|++|.|+. |++.+||||+|++|++..+..+.. T Consensus 75 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~------ 148 (421) T protein:vir:10 75 GRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMP------ 148 (421) T ss_pred ceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceE------ Confidence 4445566666555 6899999999999999999999999999999984 899999999999999987765432 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC---- Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM---- 233 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~---- 233 (457) .|.+.. . ...+++++|||+++++ .++++|+||+..+..+|....++++++.++|+||+.|+++|+++... T Consensus 149 ~y~~~~--~---g~~~~~~eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~ 222 (421) T protein:vir:10 149 YYEIPE--I---GETLPMRMMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIK 222 (421) T ss_pred EEEEcC--C---CcEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccC Confidence 222211 1 1368999999999876 57899999999999999999999999999999999999999988654 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++++.++++++|++.+++..|+++++++++|++|++++++++|+||+|.++++.++||++|||||.+||....+++ ++ T Consensus 223 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--sn 300 (421) T protein:vir:10 223 SQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATN--NN 300 (421) T ss_pred CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCcc--cc Confidence 8999999999999999999999999999999999999999999999999999999999999999999998877664 55 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .|++.+.|+++||.|++.+||++||++|+++.+..+.+++||++.+++.|.+++++++++++++|+||+||+|+++|+|| T Consensus 301 ~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p 380 (421) T protein:vir:10 301 IEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPP 380 (421) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 89999999999999999999999999999988877789999999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457) +++ ||++++|+|+++++...+.+.. + ....+.+.++--+++ T Consensus 381 ~~g--gD~~~~~~n~~~~~~~~~~~~~-------~---~~~~~~e~d~~~~~~ 421 (421) T protein:vir:10 381 IAG--GDKYLTPLNMVDSAQIIPGDKK-------P---TAQQMAEIDTILSRT 421 (421) T ss_pred CCC--cceeeeccccccccccccCCCC-------c---ccccCcccccccccC Confidence 986 9999999999876655322211 0 000111111111111 No 26 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=2e-91 Score=517.78 Aligned_cols=405 Identities=25% Similarity=0.409 Sum_probs=338.7 Q ss_pred Cchhhhhhcccccccccccccc-cccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGR-AWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) =|||+++..++........... ...+. ....+.++..|+.+.|+++++|++||++||+++|++|+++|+..++ T Consensus 14 ~g~~~~~~~~f~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~ 87 (424) T protein:vir:18 14 NGWWARLKSWFVGGRLVTPNQGSQTGPV------SAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQN 87 (424) T ss_pred CchHHHHHhhccccccccccchhhcccc------ccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccC Confidence 5777776544433322221111 11111 1112334567899999999999999999999999999999987654 Q ss_pred ce--eeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 80 TR--KEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 80 ~~--~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) +. ....+|+++.+| .+||+.|++++||+.++.+++++||+|++|.|+ .|++.+|+|++|.+|++..+.. . . T Consensus 88 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~-~----~ 162 (424) T protein:vir:18 88 DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGK-K----V 162 (424) T ss_pred CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCC-e----E Confidence 42 223456666655 689999999999999999999999999999987 5899999999999999876532 1 1 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CC Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MS 234 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~ 234 (457) .|.+.. .+....|+++||||+++++ .++++|+||+..+...|..+.++++++.++|+||+.|+++++++.. .+ T Consensus 163 --~y~~~~---~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~ 236 (424) T protein:vir:18 163 --VYRYQR---DSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLT 236 (424) T ss_pred --EEEEEe---CCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCC Confidence 233322 2345689999999999876 4779999999999999999999999999999999999999999875 79 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +++.+++++.|++.++ +.|+|++++|++|++|+++++++.|+||+|++++++++||++|||||++||...++++++++. T Consensus 237 ~e~~~~~~~~~~~~~~-~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~ 315 (424) T protein:vir:18 237 EQQRSQVEENFKEIAG-GPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGI 315 (424) T ss_pred HHHHHHHHHHHHHHhC-CcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccH Confidence 9999999999987765 467899999999999999999999999999999999999999999999999999988888899 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) |++...|+++||.|++++||++||++|+++.+..+.+++||++.+++.|.+++++++++++++|+||+||+|+++|+||+ T Consensus 316 eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi 395 (424) T protein:vir:18 316 EQQNLGFLQYTLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPL 395 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999988777899999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) || ||++++++|++++............++ T Consensus 396 ~g--gD~~~~~~n~~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 396 PG--GDVAMRQAQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred CC--cCeeeeccCccchhhhhccCCccccCC Confidence 87 999999999999876543221111111 No 27 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=5e-90 Score=510.16 Aligned_cols=412 Identities=25% Similarity=0.403 Sum_probs=338.9 Q ss_pred chhhhhhcccccccccccccccccccchhh-hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 2 GFWSALFGRGHSPALDAAEGRAWEPYDPSI-YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 2 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) =||+|.+.+..... ..+..++.. ...+..+.++..|+.+.|+++++|++||++||++||++|+++|++.+++ T Consensus 1 ~~~~r~~~~~~~~~-------~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 73 (419) T protein:vir:14 1 MFFSRQLLSNLGQT-------QMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGED 73 (419) T ss_pred Cccccccccccccc-------ccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 13343322222111 111112222 2233445678889999999999999999999999999999999988888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) +....+|+++.+| .+||++|++++||+.++.+++++||+|++|.|+ .|++.+++|++|.+|++..+.++.. . T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~------~ 147 (419) T protein:vir:14 74 RKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKP------V 147 (419) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceE------E Confidence 7777788887766 589999999999999999999999999999997 5899999999999999987665432 2 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC----C Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM----S 234 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~----~ 234 (457) |++... ..++.++|+|+++++ .++++|+||+..+...|....++.+++.++|+||+.|+++|+++... + T Consensus 148 y~~~~~------~~~~~~~i~h~~~~~-~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~ 220 (419) T protein:vir:14 148 YRVRGS------DPMPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKD 220 (419) T ss_pred EEEccC------cccchhheeEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccC Confidence 332211 237889999999876 47899999999999999999999999999999999999999998655 5 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +++.+++++.|++.+++.+|+++++++++|++|+++++++.|+||+|.+++++++||++|||||.+||...++++ ++. T Consensus 221 ~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~--s~~ 298 (419) T protein:vir:14 221 QASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNI 298 (419) T ss_pred HHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCc--ccH Confidence 889999999999999999999999999999999999999999999999999999999999999999998776554 558 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) |++.+.|+++||.|++++||++||++|+++.+..+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+ T Consensus 299 E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~ 378 (419) T protein:vir:14 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV 378 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999888778899999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccccc Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETED 453 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (457) || ||++++|+|+++++.....+..+.++ ......+.+ .--. T Consensus 379 ~g--GD~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~~e~~---------------~~l~ 419 (419) T protein:vir:14 379 KG--GDIYLSPMNMVDASKPQQLPVGKSEP-TKAAIDEIG---------------RILS 419 (419) T ss_pred CC--cCeeeeccccccccccccccCCCCCC-ccccccchh---------------cccC Confidence 87 99999999998866554321111100 000000000 0000 No 28 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=5.4e-90 Score=509.99 Aligned_cols=413 Identities=25% Similarity=0.379 Sum_probs=344.6 Q ss_pred chhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCce Q lcl|Aclame:pro 2 GFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTR 81 (457) Q Consensus 2 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 81 (457) =||++||+|+........ .+... ......+..+.++..|+.+.++++++|++||++||++||++|++++++.+++. T Consensus 1 m~~~~~f~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~ 76 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHED---GFNNI-LLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGI 76 (416) T ss_pred CccchhcccccCccccCc---cchhH-HHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 367888887654432111 11111 11122344566788899999999999999999999999999999999887777 Q ss_pred eeecCcchhhh-ccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 82 KEIDTPEWLDF-PNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 82 ~~~~~~~~~~l-~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....|+++.+ +.+||++|++++|++.++.+++++||+|++|.++ .|.+.+|+|++|++|++..+..++..+ | T Consensus 77 ~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~-----~ 151 (416) T protein:vir:12 77 ERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLW-----Y 151 (416) T ss_pred ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEE-----E Confidence 66666666654 5799999999999999999999999999999987 588999999999999998876655322 2 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~ 239 (457) .+.. .+....+++++|||+++++ .++++|+||+.++..+|....++.+++.++|+||+.|+++++++..+++++.+ T Consensus 152 ~~~~---~g~~~~~~~~eiih~~~~~-~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~ 227 (416) T protein:vir:12 152 QTVL---NGKAIELYDYEVLHFKGLS-TDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPKE 227 (416) T ss_pred EEec---CCeEEEecCccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHH Confidence 2222 2344689999999999876 46799999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH Q lcl|Aclame:pro 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 240 ~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~ 319 (457) ++++.|+... ++++++++++|++|+++++++.|+||+|.++++.++||++|||||.+||....+++ ++.+++.+ T Consensus 228 ~~~~~~~~~~----~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~--sn~e~~~~ 301 (416) T protein:vir:12 228 NVRKEWKRVN----KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATF--SNIEHQSI 301 (416) T ss_pred HHHHHHHHHh----cCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCc--ccHHHHHH Confidence 9999997643 56889999999999999999999999999999999999999999999998776654 55799999 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .|+++||.|++.+||++||++|+++.+. .+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+++ T Consensus 302 ~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~g-- 379 (416) T protein:vir:12 302 EYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIEN-- 379 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC-- Confidence 9999999999999999999999988875 5678999999999999999999999999999999999999999999987 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ||++++|+|+++++...+.+..++..+.. +.+++.+. T Consensus 380 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~-gge~~~~g 416 (416) T protein:vir:12 380 GDKYISSLNYVFLDFLEEYQRLKAGGAMK-GGDNKNEG 416 (416) T ss_pred cceeeeccccccccccchhhccccccccC-CCCCcCCC Confidence 99999999999998877665433222111 11111111 No 29 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=2.3e-89 Score=506.49 Aligned_cols=414 Identities=18% Similarity=0.232 Sum_probs=327.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||+|.+..+|... ........+.....+....++..++.+.|+++++|++||++||++||++|++++++ + T Consensus 26 ~~lf~~~e~R~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~---~ 95 (441) T protein:vir:94 26 VGIFYKNEKRDLQ-------YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN---G 95 (441) T ss_pred ccccccccccccc-------CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecC---c Confidence 4444322222110 00111111111111222334556888999999999999999999999999999853 3 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....++....|+.+||++|++++||+.++.+++++||+|++|+|+. |++.+|+|++|++|++..+..+...+ .| T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~----~~ 171 (441) T protein:vir:94 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYY----FH 171 (441) T ss_pred cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEE----EE Confidence 33344555555557999999999999999999999999999999974 89999999999999998876554322 22 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ......+....+.++++||||+++++ .++++|+||+..+.++|....++++++.++|+||+.|+|+++++... ++++. T Consensus 172 ~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~ 250 (441) T protein:vir:94 172 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 250 (441) T ss_pred EEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHH Confidence 22222344556789999999999765 57799999999999999999999999999999999999999999887 57888 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.++|..|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||.... +++.+++. T Consensus 251 e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~s~~q~~ 326 (441) T protein:vir:94 251 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA----NMSITDAN 326 (441) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC----CccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999986432 22245555 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .. +.+||.|++.+||++||++|+++. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++|++ T Consensus 327 ~~-~~~tl~P~~~~ie~eln~kl~~~~--~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd 403 (441) T protein:vir:94 327 LD-YLSTLKPYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred HH-HHHHHHHHHHHHHHHHhhhccccc--cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 54 457999999999999999998764 356899999999999999999999999999999999999999999999988 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) .+.+++++|+++++..++.+..+... .+....++++.+ T Consensus 404 ~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~kgGe~~e 441 (441) T protein:vir:94 404 GSIHRVDLNHVNIELVDEYQMNKSRA--TDKKLKGGEENE 441 (441) T ss_pred cceEeecccccccccccccccccccc--cccccCCCCCCC Confidence 88999999999988876544332221 111111111111 No 30 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=2.3e-89 Score=506.49 Aligned_cols=414 Identities=18% Similarity=0.232 Sum_probs=327.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||+|.+..+|... ........+.....+....++..++.+.|+++++|++||++||++||++|++++++ + T Consensus 26 ~~lf~~~e~R~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~---~ 95 (441) T protein:vir:79 26 VGIFYKNEKRDLQ-------YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN---G 95 (441) T ss_pred ccccccccccccc-------CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecC---c Confidence 4444322222110 00111111111111222334556888999999999999999999999999999853 3 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....++....|+.+||++|++++||+.++.+++++||+|++|+|+. |++.+|+|++|++|++..+..+...+ .| T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~----~~ 171 (441) T protein:vir:79 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYY----FH 171 (441) T ss_pred cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEE----EE Confidence 33344555555557999999999999999999999999999999974 89999999999999998876554322 22 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ......+....+.++++||||+++++ .++++|+||+..+.++|....++++++.++|+||+.|+|+++++... ++++. T Consensus 172 ~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~ 250 (441) T protein:vir:79 172 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 250 (441) T ss_pred EEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHH Confidence 22222344556789999999999765 57799999999999999999999999999999999999999999887 57888 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.++|..|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||.... +++.+++. T Consensus 251 e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~s~~q~~ 326 (441) T protein:vir:79 251 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA----NMSITDAN 326 (441) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC----CccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999986432 22245555 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .. +.+||.|++.+||++||++|+++. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++|++ T Consensus 327 ~~-~~~tl~P~~~~ie~eln~kl~~~~--~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd 403 (441) T protein:vir:79 327 LD-YLSTLKPYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred HH-HHHHHHHHHHHHHHHHhhhccccc--cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 54 457999999999999999998764 356899999999999999999999999999999999999999999999988 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) .+.+++++|+++++..++.+..+... .+....++++.+ T Consensus 404 ~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~kgGe~~e 441 (441) T protein:vir:79 404 GSIHRVDLNHVNIELVDEYQMNKSRA--TDKKLKGGEENE 441 (441) T ss_pred cceEeecccccccccccccccccccc--cccccCCCCCCC Confidence 88999999999988876544332221 111111111111 No 31 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=2.5e-89 Score=506.31 Aligned_cols=414 Identities=18% Similarity=0.246 Sum_probs=327.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||+|.+..+| .... .......+.....+....++..++.+.|+++++|++||++||++||++|++++++ + T Consensus 26 ~~~f~~~e~r----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~---~ 95 (441) T protein:vir:98 26 VGIFYKNEKR----DLQY---NEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN---G 95 (441) T ss_pred cccccccccc----cccC---CCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecC---C Confidence 4444322221 1111 0111111111111122334567889999999999999999999999999999863 2 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....++....|+.+||+.|++++|++.++.+++++||+|++|+|+. |++.+|+|++|+.|++..+..+...+ .| T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~----~~ 171 (441) T protein:vir:98 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYY----FH 171 (441) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEE----EE Confidence 33334444545557999999999999999999999999999999874 89999999999999998876654322 22 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ......+......|+++||||+++++ .++++|+||+..+.++|....++++++.++|+||+.|+++++++..+ ++++. T Consensus 172 ~~~~~~~~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~ 250 (441) T protein:vir:98 172 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 250 (441) T ss_pred EEeccCcceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHH Confidence 22222344556789999999999865 57799999999999999999999999999999999999999999887 47788 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.++|..|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.+||.... +++.+++. T Consensus 251 ~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~----~~s~~q~~ 326 (441) T protein:vir:98 251 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA----NMSITDAN 326 (441) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC----CccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999986432 22345665 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) ..|. +||+|++.+||++||++|+++.+ +.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++|++ T Consensus 327 ~~y~-~tl~P~~~~ie~~ln~~L~~~~~--~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd 403 (441) T protein:vir:98 327 LDYL-STLKPYITCVCAELNFKFNDEYV--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred HHHH-HHHHHHHHHHHHHHHhhcccccc--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 5555 69999999999999999987653 46899999999999999999999999999999999999999999999988 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) ++.+++|+|+++++..++.+..+.... +....++++.+ T Consensus 404 ~~~~~~~~n~~~~~~~~~~q~~~~~~~--~~~~kgGe~ne 441 (441) T protein:vir:98 404 GSIHRVDLNHVNIELVDEYQMNKSRAT--DKKLKGGEENE 441 (441) T ss_pred cceEeeccccccccccccccccccccc--ccccCCCCCCC Confidence 889999999999888766544322211 11111111111 No 32 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=2.3e-89 Score=506.54 Aligned_cols=408 Identities=19% Similarity=0.227 Sum_probs=328.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccC-HHHHhccHHHHHHHHHHHHhhccCceEEEEecc- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVT-PHDALQVSAVFASVRLLSETIATLPLSTYSKRG- 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~- 78 (457) ||||++|+.+....+ + ...+...+ ....+...++..++ .+.++++|+|++||++||+++|++|+++|++.+ T Consensus 1 Mg~~~~~~~~~~~~~--~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~d 73 (423) T protein:vir:81 1 MGFLQKLGLAPSVVA--T--PEPIELVG---PIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVED 73 (423) T ss_pred CchhHhhcccccccc--C--cccccccc---ccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecC Confidence 999999865543321 1 11111111 11222333333333 444568999999999999999999999998665 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC---ceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP---NIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g---~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) +......+|.++.++.+||++|++++||+.++.+++++||+|++|.|+.+ ....++|+++..+++....++... T Consensus 74 g~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~--- 150 (423) T protein:vir:81 74 GGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGS--- 150 (423) T ss_pred CceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcc--- Confidence 44556788888899999999999999999999999999999999998754 455666666776666554332211 Q ss_pred eEEEEEe-eecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC--- Q lcl|Aclame:pro 156 FEAYDID-ADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--- 231 (457) Q Consensus 156 ~~~y~~~-~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--- 231 (457) ..|.+. .....+....++++||||++.+++.+..+|+||+..+.++|....++++++.++|+||+.|+++|+++. T Consensus 151 -~~Y~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~ 229 (423) T protein:vir:81 151 -LDYIIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESK 229 (423) T ss_pred -eEEEEEEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCccc Confidence 122222 122345567899999999999998888899999999999999999999999999999999999998753 Q ss_pred --CCCHHHHHHHHHHHHHHh-ccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 232 --TMSEEGLARAREAWRAAN-SGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 232 --~~~~e~~~~~~~~~~~~~-~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) .+++++++++++.|++.+ ++..|+|++++|++|++|++++++++|+||+|.++++.++||++|||||.+||..++++ T Consensus 230 ~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t 309 (423) T protein:vir:81 230 AGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNAN 309 (423) T ss_pred CccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCC Confidence 478999999999999988 46788999999999999999999999999999999999999999999999999877655 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc--ccceEEEecchhhhccHHHHHHHHHHHHh-CCCcCHHHH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD--RFRFVKFNLDEIKRGAPKERMELWSLGLQ-NGIYSIDEV 385 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~--~~~~~~f~~~~~~~~d~~~~~~~~~~~~~-~g~~T~nE~ 385 (457) + ++.|++.+.|+++||+|++..||++|+++|+++.+. .+.+++||++.+++.|.+++++++.+++. .||+|+||+ T Consensus 310 ~--sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~ 387 (423) T protein:vir:81 310 Y--SNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEV 387 (423) T ss_pred c--ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHH Confidence 4 558999999999999999999999999999998763 56789999999999999999999999885 699999999 Q ss_pred HHHhCCCCCCCCCCceeeecccccccccccccccccCC Q lcl|Aclame:pro 386 RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAP 423 (457) Q Consensus 386 R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~ 423 (457) |+++|+||+|| ||++++|+|+++.+....+.....+ T Consensus 388 R~~~gl~p~~g--GD~~~~p~n~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 388 RAMDNLPSIDG--GDDLARPLNTEFGDSEDAPGEEVET 423 (423) T ss_pred HHHhCCCCCCC--cceeecccccccCccCCCCCCCCCC Confidence 99999999987 9999999998764433211100000 No 33 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=4.4e-89 Score=504.99 Aligned_cols=414 Identities=18% Similarity=0.231 Sum_probs=332.3 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++..+|..... ..+...+.....+....++..++...|+++++|++||++||+++|++||+++++ + T Consensus 1 Mg~f~~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~---~ 70 (416) T protein:vir:81 1 MGIFYKNEKRDLQYN-------EDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN---G 70 (416) T ss_pred CCcccccccccccCC-------CcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecC---c Confidence 999976544322111 111111111111222345667889999999999999999999999999999853 3 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....++....|+.+||+.|++++||+.++.+++++||+|+++.|+ .|++.+|+|++|++|++..+..+...+ .| T Consensus 71 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~----~~ 146 (416) T protein:vir:81 71 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYY----FH 146 (416) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEE----EE Confidence 3334455555556799999999999999999999999999999997 489999999999999998876654322 22 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ......+....+.|+++||||+++++ .++++|+||+..+.++|....++.+++.++|+||+.|+++++++... ++++. T Consensus 147 ~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~ 225 (416) T protein:vir:81 147 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 225 (416) T ss_pred EEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHH Confidence 22222344555789999999999865 57899999999999999999999999999999999999999999876 46788 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.+.+..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.+||.... +++.+++. T Consensus 226 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~~~~~~~ 301 (416) T protein:vir:81 226 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA----NMSITDAN 301 (416) T ss_pred HHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC----CccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999986432 12244554 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) . ++.+||.|++.+||++||++|+++.. +.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++|++ T Consensus 302 ~-~~~~~l~P~~~~ie~~ln~~l~~~~~--~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:81 302 L-DYLSTLKPYITCVCAELNFKFNDEYV--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred H-HHHHHHHHHHHHHHHHHhhhcccccc--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 4 45679999999999999999987653 56899999999999999999999999999999999999999999999988 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) ++++++++|+++++..++.+..+..... ....+++..| T Consensus 379 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~kgGe~n~ 416 (416) T protein:vir:81 379 GSIHRVDLNHVNIELVDEYQMNKSRATD--KKLKGGEENE 416 (416) T ss_pred cceEeecccccccccccccCcccccccc--cccCCCCCCC Confidence 9999999999999887655443322211 1111111111 No 34 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=4.4e-89 Score=504.99 Aligned_cols=414 Identities=18% Similarity=0.231 Sum_probs=332.3 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++..+|..... ..+...+.....+....++..++...|+++++|++||++||+++|++||+++++ + T Consensus 1 Mg~f~~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~---~ 70 (416) T protein:vir:45 1 MGIFYKNEKRDLQYN-------EDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN---G 70 (416) T ss_pred CCcccccccccccCC-------CcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecC---c Confidence 999976544322111 111111111111222345667889999999999999999999999999999853 3 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .....++....|+.+||+.|++++||+.++.+++++||+|+++.|+ .|++.+|+|++|++|++..+..+...+ .| T Consensus 71 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~----~~ 146 (416) T protein:vir:45 71 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYY----FH 146 (416) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEE----EE Confidence 3334455555556799999999999999999999999999999997 489999999999999998876654322 22 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ......+....+.|+++||||+++++ .++++|+||+..+.++|....++.+++.++|+||+.|+++++++... ++++. T Consensus 147 ~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~ 225 (416) T protein:vir:45 147 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 225 (416) T ss_pred EEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHH Confidence 22222344555789999999999865 57899999999999999999999999999999999999999999876 46788 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.+.+..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.+||.... +++.+++. T Consensus 226 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~~~~~~~ 301 (416) T protein:vir:45 226 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA----NMSITDAN 301 (416) T ss_pred HHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC----CccHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999986432 12244554 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) . ++.+||.|++.+||++||++|+++.. +.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||++|++ T Consensus 302 ~-~~~~~l~P~~~~ie~~ln~~l~~~~~--~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:45 302 L-DYLSTLKPYITCVCAELNFKFNDEYV--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred H-HHHHHHHHHHHHHHHHHhhhcccccc--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 4 45679999999999999999987653 56899999999999999999999999999999999999999999999988 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) ++++++++|+++++..++.+..+..... ....+++..| T Consensus 379 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~kgGe~n~ 416 (416) T protein:vir:45 379 GSIHRVDLNHVNIELVDEYQMNKSRATD--KKLKGGEENE 416 (416) T ss_pred cceEeecccccccccccccCcccccccc--cccCCCCCCC Confidence 9999999999999887655443322211 1111111111 No 35 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=3.5e-89 Score=505.54 Aligned_cols=411 Identities=26% Similarity=0.391 Sum_probs=337.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |-|.++ +.+...... ..+.........+..+.++..|+.++|+++++|++||++||++||++|++++++.+++ T Consensus 1 m~~~~~-~~~~~~~~~------~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~ 73 (419) T protein:vir:80 1 MFFSRQ-LLSNLGQTQ------PGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) T ss_pred CCcccc-cccccCcCC------CCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCC Confidence 544432 222111111 0011111122234456678899999999999999999999999999999999998888 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+|+++.+| .+||++|++++|++.++.+++++||+|+++.|+ .|++.++||++|++|++..+..+.. . T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~------~ 147 (419) T protein:vir:80 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP------M 147 (419) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceE------E Confidence 7777777777766 589999999999999999999999999999988 4899999999999999987765432 2 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC----C Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM----S 234 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~----~ 234 (457) |++.. ...+++++|+|+++++ .++++|+||+..+...|....++.+++.++|+||+.|+++|+++... + T Consensus 148 y~~~~------~~~~~~~~i~h~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~ 220 (419) T protein:vir:80 148 YRVAG------ADPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKD 220 (419) T ss_pred EEEcC------ccccchhheEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC Confidence 33321 1248899999999876 47799999999999999999999999999999999999999987543 6 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +++.+++++.|++.+++..|+|+++++++|++|+++++++.|+||+|.++++.++||++|||||.+||..+++++ ++. T Consensus 221 ~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~--~n~ 298 (419) T protein:vir:80 221 QASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNI 298 (419) T ss_pred HHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCc--ccH Confidence 889999999999999999999999999999999999999999999999999999999999999999998776654 558 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) |++.+.|+++||.|++..||++|+++|+++.+..+++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+ T Consensus 299 e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~ 378 (419) T protein:vir:80 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV 378 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999888778899999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +| ||++++|+|+++.+.+...+....+++. ....+.+.. T Consensus 379 ~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 417 (419) T protein:vir:80 379 KG--GDIYLSPMNMVDASKPQPIPMGKTEPTK----------------------AALDEIGRI 417 (419) T ss_pred CC--cceeeeccccccccccccccCCCCCchh----------------------hhHHHHHhh Confidence 87 9999999999775555432211111100 000000001 No 36 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=3e-88 Score=500.43 Aligned_cols=415 Identities=16% Similarity=0.208 Sum_probs=324.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |+||+++..... + .| ..........++.++..+. .+|+++++|++||++||++||++|++++++.+++ T Consensus 1 m~~~~~~~~~~~-----~----~~--~~~~~~~~~~~~~~g~~~~-~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~ 68 (417) T protein:vir:38 1 MKLFRGLATEVD-----P----HW--ADHLLDSGVIPSFRGGYLG-ISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDE 68 (417) T ss_pred CccccccccCCC-----c----cc--hhhhcccccccccCCceec-hhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcc Confidence 999964321110 0 01 0000011112222333333 4799999999999999999999999999876655 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .. ..++....|+.+||++|++++|++.++.+++++||+|++|+|+ +|.+..+++++|++|.+.....+.+. T Consensus 69 ~~-~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~------ 141 (417) T protein:vir:38 69 VI-DLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNII------ 141 (417) T ss_pred ee-ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEE------ Confidence 43 2334444455789999999999999999999999999999987 46799999999999998876654332 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+... .+.....++++||||+++++ .++++|+||+.++..+|.+..++.+++.++|+||++|+++++.+..+++++. T Consensus 142 y~~~~~-~~~~~~~~~~~dviH~r~~~-~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l~~e~~ 219 (417) T protein:vir:38 142 YRFTPY-NSSMQKVCGFEDVIHWKFFS-YDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEAR 219 (417) T ss_pred EEEEEc-CCcEEEEecCcceEEecCCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCHHHH Confidence 333222 33445678999999999875 5789999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++++++|++.+++. |+|+++++++|++|++++++++|+||+|.+++++++||++|||||++||. +.++++.+++. T Consensus 220 ~~~~~~~~~~~~g~-n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~----~~~~s~~e~~~ 294 (417) T protein:vir:38 220 QKIREDFERAQAGA-DAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ----NSPNQSVKQLA 294 (417) T ss_pred HHHHHHHHHHhccc-ccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC----CCcchhHHHHH Confidence 99999999998774 89999999999999999999999999999999999999999999999984 23566789999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) +.|+++||.|+++.||++|+++|+++.+....+++||++.+...+ ...+++++++|++|+||+|+++|+||+++++ T Consensus 295 ~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~----~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~ 370 (417) T protein:vir:38 295 DDYIRNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLP----IADVNTAVNGGLWTGNEGRAELGKKPLKDPN 370 (417) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhhcccceEEechhhhhHHH----HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 999999999999999999999999988877778999988775443 3446789999999999999999999999999 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) +|++++|+|+++++.....+..+... ..+.+++.+ .+.+ ..++.+.+ T Consensus 371 ~d~~~~~~n~~~~d~~~~~~~~~~~~--~kgg~~~~~----~~~~---~~~~~~~~ 417 (417) T protein:vir:38 371 MDRIQSTLNTVFLDQKEAYQAEHAAE--LKGGDTNAK----GNQN---GSGTNANS 417 (417) T ss_pred CCeeeecccccccccccccccccccc--cCCCCCCCC----CCCc---CCCCcCCC Confidence 99999999999999876654322111 111111111 1111 00111111 No 37 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=9.7e-88 Score=497.62 Aligned_cols=417 Identities=12% Similarity=0.071 Sum_probs=340.4 Q ss_pred Cchhhhhhccccccccccccccccccc-chhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPY-DPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) =+++.|++++.+.... + .++.+ .+....+.+.+.++..++.+.++++|+|++||++||+++|++||++|++.++ T Consensus 2 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~ 76 (460) T protein:vir:10 2 ANRIIRALRELTGLDN----K-FNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDT 76 (460) T ss_pred chhHHHHHhhhhccCC----C-chHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCC Confidence 3455666544322111 1 11111 1111122334446677888899999999999999999999999999998766 Q ss_pred cee----------------------------eecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec----- Q lcl|Aclame:pro 80 TRK----------------------------EIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA----- 126 (457) Q Consensus 80 ~~~----------------------------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~----- 126 (457) +.. ...++....|+.+||++|++++||+.++.+++++||+|++|+|+ T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~ 156 (460) T protein:vir:10 77 KAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGIN 156 (460) T ss_pred ccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCcc Confidence 532 23445566788999999999999999999999999999999985 Q ss_pred CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCcc-----CCccccchhHHHHH Q lcl|Aclame:pro 127 GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLP-----GDFVGCSPISYARE 201 (457) Q Consensus 127 ~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~-----~~~~G~s~~~~~~~ 201 (457) .|.+.+|+|++|++|++..+.++....+....+.+... .++....|+++||||+|++++. ++++|+||+..+.. T Consensus 157 ~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~ 235 (460) T protein:vir:10 157 AGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLI-QGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILR 235 (460) T ss_pred CceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEe-cCceeEEecccceEEEecCCCCcccccCccccccHHHHHHH Confidence 37899999999999999988776655444333333333 3455678999999999987765 45799999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHH Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQ 281 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e 281 (457) .|....++++++.++|+||+.|+++++.+..+++++.+++++.|++.++|..|+|+++++++|++|+++++++.|+||+| T Consensus 236 ~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e 315 (460) T protein:vir:10 236 NINSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFD 315 (460) T ss_pred HHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchh- Q lcl|Aclame:pro 282 TRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEI- 359 (457) Q Consensus 282 ~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~- 359 (457) .+++++++||++|||||.+||...++++++++.|++.+.|+++||.|++..||++||++|+++.+. .+.+++||++.+ T Consensus 316 ~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~ 395 (460) T protein:vir:10 316 YLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELP 395 (460) T ss_pred HHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhh Confidence 999999999999999999999988888888899999999999999999999999999999998875 457889999887 Q ss_pred -hhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCC Q lcl|Aclame:pro 360 -KRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPA 434 (457) Q Consensus 360 -~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (457) ++.|.++ ...++++|++|+||+|+++|+||+++++||++++|+|+++++...+.... ...+++. T Consensus 396 ~l~~d~~~----~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~~~-------~~~nq~~ 460 (460) T protein:vir:10 396 EMQTDMVA----MASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNNLID-------SAFNQNQ 460 (460) T ss_pred hHHHHHHH----HHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccccCC-------CcccCCC Confidence 4444444 34577899999999999999999998899999999999998765432110 0000000 No 38 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=2e-87 Score=495.89 Aligned_cols=407 Identities=17% Similarity=0.223 Sum_probs=330.4 Q ss_pred Cchh--hhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFW--SALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) |+|| ++++++.+.+.............. .+ ......++..++.+.++++|+|++||++||++||++|++++++.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~ 77 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLY-DF--SPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 77 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccc-cc--cccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeeccc Confidence 9999 556666554433332222211110 01 111123556688899999999999999999999999999997654 Q ss_pred CceeeecCcchhh-hccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 79 GTRKEIDTPEWLD-FPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 79 ~~~~~~~~~~~~~-l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) . .+|+++. |+.+||++|++++||+.++.+++++||+|+++.|+ .|++.+|+|++|+.|++..+..++.. T Consensus 78 ~-----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~---- 148 (412) T protein:vir:26 78 V-----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL---- 148 (412) T ss_pred c-----ccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEE---- Confidence 2 2344444 45689999999999999999999999999999987 58899999999999999887765321 Q ss_pred EEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHH Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEE 236 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e 236 (457) .|.+. ...+....|+++||||++++++.++++|+||+.++...|.+..++.+++ ++.++..++++++.+..++++ T Consensus 149 -~y~~~--~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~l~~e 223 (412) T protein:vir:26 149 -YYSIH--AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKE 223 (412) T ss_pred -EEEEE--cCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHH Confidence 23332 2334556799999999999888899999999999999999999998885 455555677888899999999 Q ss_pred HHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 237 GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 237 ~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) +.++++++|++.+. ++++++++++|++|++++++++|+||+|.+++++++||++|||||.+||...+++ +++.|+ T Consensus 224 ~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~--~sn~e~ 298 (412) T protein:vir:26 224 KRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN--FAKNEE 298 (412) T ss_pred HHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHH Confidence 99999999998764 5688999999999999999999999999999999999999999999999865544 556799 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLP 395 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~ 395 (457) +.+.|+++||.|++.+||++||++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+| T Consensus 299 ~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 378 (412) T protein:vir:26 299 LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE 378 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 9999999999999999999999999998875 567899999999999999999999999999999999999999999998 Q ss_pred CCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) | ||++++++|+++++.....+...+.++.+ ..+ + T Consensus 379 g--gD~~~~~~n~~~~~~~~~~~~~~~gG~~n-------------~~e-------------~ 412 (412) T protein:vir:26 379 G--GDKPLISGDLYPIDTPLELRKSLKGGDKN-------------VNE-------------S 412 (412) T ss_pred C--cCeeeecccccccccchhhcccccCCCCC-------------cCC-------------C Confidence 7 99999999999987655443322111100 000 0 No 39 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=1.2e-86 Score=491.62 Aligned_cols=404 Identities=17% Similarity=0.227 Sum_probs=324.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |+||+|+....-...........++ ++. +. ..+...|+.+.++++++|++||++||++||++|++++++.+. T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~---~~~--~~--~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~- 75 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWIDQSASKLYD---FSP--WK--NKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV- 75 (409) T ss_pred ccchhhhhhHHhhhhhccccccccc---ccc--cc--CccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecccc- Confidence 8888876543222111111111111 111 11 123345788899999999999999999999999999976542 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++....|+.+||++|++++|++.++.+++++||+|++|.|+ .|++.+|+|++|+.|++..+.+++.. .| T Consensus 76 ---~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~-----~y 147 (409) T protein:vir:96 76 ---VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL-----YY 147 (409) T ss_pred ---cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEE-----EE Confidence 2344444455689999999999999999999999999999987 58999999999999999887665422 12 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~ 239 (457) .+ ....+....|+++||||++++++.++++|+||+..+...+....++.++. ++.++..+++++..+..+++++++ T Consensus 148 ~~--~~~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~ 223 (409) T protein:vir:96 148 SI--HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVSTEKRQ 223 (409) T ss_pred EE--EcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCCCCHHHHH Confidence 22 22334556899999999999888899999999999999999999988875 444444567788888999999999 Q ss_pred HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH Q lcl|Aclame:pro 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 240 ~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~ 319 (457) +++++|++.+. ++++++++++|++|+++++++.|+||+|.++++.++||++|||||.+||...+++ +++.|++.+ T Consensus 224 ~~~~~~~~~~~---n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~s~~e~~~~ 298 (409) T protein:vir:96 224 QVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN--FAKNEELNR 298 (409) T ss_pred HHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHHHH Confidence 99999998774 5689999999999999999999999999999999999999999999999876554 455899999 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .|+++||.|++++||++|+++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| T Consensus 299 ~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~g-- 376 (409) T protein:vir:96 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG-- 376 (409) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC-- Confidence 9999999999999999999999998875 5678999999999999999999999999999999999999999999987 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) ||++++++|+++++.....+...++++ + +. ++| T Consensus 377 gD~~~~~~n~~~~~~~~~~~~~~~gG~------~-------n~-----~e~ 409 (409) T protein:vir:96 377 GDKPLISGDLYPIDTPLELRKSLKGGD------K-------NV-----NES 409 (409) T ss_pred cceeeecccccccccchhhcccccCCC------C-------Cc-----CCC Confidence 999999999999876543332211110 0 00 000 No 40 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=3.1e-86 Score=489.38 Aligned_cols=427 Identities=16% Similarity=0.127 Sum_probs=339.0 Q ss_pred Cchhhhhhccccccccccccc--------------ccccccchhhh---ccc---ccccCccccCHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEG--------------RAWEPYDPSIY---NLG---ATASSGERVTPHDALQVSAVFASVR 60 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~---~~~---~~~~~~~~v~~~~~~~~~~v~~~i~ 60 (457) ||||+||+++..++....... ..+....+... ..+ ..+.++..|+.+.++++++|++||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 999999988765432111110 00001111111 111 1122567799999999999999999 Q ss_pred HHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---------Ccee Q lcl|Aclame:pro 61 LLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG---------PNIA 131 (457) Q Consensus 61 ~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~---------g~~~ 131 (457) +||++||++|++++++.++++....+|+++.|+.+||++|++++|++.++.+++++||+|++|.|+. +.+. T Consensus 81 ~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~~ 160 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVVV 160 (466) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCccee Confidence 9999999999999999888888889999999999999999999999999999999999999999864 4589 Q ss_pred EEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccC-CccCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 GLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM-MLPGDFVGCSPISYARESIGLALAAQ 210 (457) Q Consensus 132 ~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~ 210 (457) +++|++|.+|.+....++.... .+.|+............|+++|||||+.+ ++.++++|+||+..+.++|....+++ T Consensus 161 ~l~~l~~~~v~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~ 238 (466) T protein:vir:81 161 EERMVRGGRGELGGGQLGWRKV--GYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMS 238 (466) T ss_pred EEEEecCcceEEEEcCCCceEE--EEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHH Confidence 9999999999998876554322 23344443334455678999999999975 56789999999999999999999999 Q ss_pred HHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEI 290 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~I 290 (457) +++.++|+||+.|+++++.+..+++++++++++.|++.++|..|+|+++++++|++|++++++++|+||+|+++++.++| T Consensus 239 ~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~I 318 (466) T protein:vir:81 239 KHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRI 318 (466) T ss_pred HHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHhCCCHHHhccccc-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHH Q lcl|Aclame:pro 291 ARIFGVPPHLISDATN-STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERME 369 (457) Q Consensus 291 a~~fgvpp~~lg~~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~ 369 (457) |++|||||.+||..++ +..+++++|++.+.|+++||.|++++||++|+++|++..+....+++||...+++.|.+++++ T Consensus 319 a~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~ 398 (466) T protein:vir:81 319 AAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAAD 398 (466) T ss_pred HHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHHH Confidence 9999999999998765 345778899999999999999999999999999999887776788999999999999998876 Q ss_pred H-------HHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee-ecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 370 L-------WSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYR-VPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 370 ~-------~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) + +..++++|+ |+||+|..+ ++ ||.++ .+.++.+++.....+...... +++. T Consensus 399 ~~~~~~~~~~~~~~~g~-t~nE~r~~~-----~~--gd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~- 457 (466) T protein:vir:81 399 IQKVRAETINTLITAGY-EPESVVAAV-----NS--GDLRLLKHTGLTSVQLLPPGVSASASS------------DTPT- 457 (466) T ss_pred HHHHHHHHHHHHHHcCC-Chhhccccc-----cC--CccccccCCCcchhhhcccccccccCC------------CCcc- Confidence 5 667888995 999999643 33 55543 344444443332222111110 0000 Q ss_pred CCCCcccccccccc Q lcl|Aclame:pro 442 AEGDPDEGETEDDD 455 (457) Q Consensus 442 ~~~~~~~~~~~~~~ 455 (457) .+|.++++| T Consensus 458 -----~~Gg~~ngn 466 (466) T protein:vir:81 458 -----SGGADDNGN 466 (466) T ss_pred -----cCCCCcCCC Confidence 111111111 No 41 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=4.1e-86 Score=488.72 Aligned_cols=403 Identities=15% Similarity=0.204 Sum_probs=320.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+.... . .. ..++. +.....++.+ ..++..+|+++++|++||++||++||++|++++++++. T Consensus 1 m~~f~~~~~---~-~~------~~~~~-~~~~~~~~~~---~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~- 65 (406) T protein:vir:97 1 MSFFQPLGT---S-KV------SYDDY-ISSVLAGDVS---QKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGD- 65 (406) T ss_pred CccccccCC---C-CC------CcchH-HHHHhcCCCC---cccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCcc- Confidence 999974211 1 00 11111 1111111222 23444579999999999999999999999988765443 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) . ..+|.++.+| .+||+.|++++||+.++.+++++||+|++|.|+ .|.+.+++|++|+.|++..+..+.. T Consensus 66 -~-~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~------ 137 (406) T protein:vir:97 66 -I-IHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEI------ 137 (406) T ss_pred -c-cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceE------ Confidence 2 3345555555 689999999999999999999999999999987 4789999999999999887754432 Q ss_pred EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|.+.. ...+....++++||||+|+++ .++++|+||+.++...|..+.+++++..++|+||+.|++++..+..+++++ T Consensus 138 ~y~~~~-~~~~~~~~~~~~evih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~ 215 (406) T protein:vir:97 138 VYTFTD-MLTAKQVKCFAHDVIHWKFFS-HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDA 215 (406) T ss_pred EEEEEe-cCCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHH Confidence 233222 233455689999999999765 577899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ 317 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~ 317 (457) .+++++.|++.+++ .|+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||.. .++++.+++ T Consensus 216 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~----~~~~~~e~~ 290 (406) T protein:vir:97 216 RQRARQEFEKMREG-SVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVN----SPNQSVAQL 290 (406) T ss_pred HHHHHHHHHHHhcc-cccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCC----CCcchHHHH Confidence 99999999988876 6889999999999999999999999999999999999999999999999853 235668899 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) .+.|+++||.|+++.||++|+++|+++.+...++++||++.+ .+.+++.+.+++++|++|+||+|+++|+||++++ T Consensus 291 ~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~~----~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~ 366 (406) T protein:vir:97 291 MEDYVTNDLPFYFDAITSELGLKTLNDKDRRLYHIEFDTRSV----TGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDP 366 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChhhccceeEEEecCcc----chhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999999999998877778899987654 4566777889999999999999999999999999 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) +||++++|+|+++++...+++...... ..+.+.++ + .+++ T Consensus 367 ~gD~~~~~~n~~~~~~~~~~~~~~~~~--~~gg~~~~--------~-------~~~~ 406 (406) T protein:vir:97 367 NMDRYQSSLNYVFLDKKEEYQDKVGIK--GKGGEVNA--------E-------EDKS 406 (406) T ss_pred CCCeEeeccCccchhcccccccccccc--cCCCCCCC--------C-------CCCC Confidence 999999999999987765443322211 01111111 1 0001 No 42 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=1e-85 Score=486.56 Aligned_cols=404 Identities=16% Similarity=0.218 Sum_probs=322.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) =+++.|+.................++. .....+...|+.+.++++++|++||++||++||++|++++++.+.. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~~ 76 (409) T protein:vir:93 4 ENIVTRIKKKLIDNWIDQSTSKLYDFS-------PWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV 76 (409) T ss_pred cchhhhhhhhhhhhhhccccccccccc-------cccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccccc Confidence 234443322111110111111111111 1111234457888999999999999999999999999999865422 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .++....|+.+||++|++++||+.++.+++++||+|+++.|+ .|++.+|+|++|+.|++..+.+++.. .| T Consensus 77 ----~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~-----~y 147 (409) T protein:vir:93 77 ----NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL-----YY 147 (409) T ss_pred ----cchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEE-----EE Confidence 334444455789999999999999999999999999999997 58899999999999999887655321 23 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~ 239 (457) .+. ...+....|+++||||++++++.++++|+||+.++...|....++.++. ++.++..+++++..+..+++++++ T Consensus 148 ~~~--~~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~ 223 (409) T protein:vir:93 148 SIH--AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQ 223 (409) T ss_pred EEE--cCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHH Confidence 332 2334556799999999999888899999999999999999999998885 455555677888899999999999 Q ss_pred HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH Q lcl|Aclame:pro 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 240 ~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~ 319 (457) +++++|++.+. ++++++++++|++|+++++++.|+||+|.+++++++||++|||||.+||...+++ +++.|++.+ T Consensus 224 ~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~--~sn~e~~~~ 298 (409) T protein:vir:93 224 QVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN--FAKNEELNR 298 (409) T ss_pred HHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHHHH Confidence 99999998764 5688999999999999999999999999999999999999999999999866554 455899999 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) .|+++||.|++.+||++|+++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|| T Consensus 299 ~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~g-- 376 (409) T protein:vir:93 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG-- 376 (409) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC-- Confidence 9999999999999999999999998875 4678999999999999999999999999999999999999999999987 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) ||++++++|+++++.....+...++++.+ .++| T Consensus 377 gD~~~~~~n~~~~~~~~~~~~~~~gG~~n------------------~~e~ 409 (409) T protein:vir:93 377 GDKPLISGDLYPIDTPLELRKSLKGGDKN------------------VNES 409 (409) T ss_pred cCeeeecccccccccchhhcccccCCCCC------------------cCCC Confidence 99999999999987765544332111110 1111 No 43 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=4.3e-85 Score=483.11 Aligned_cols=403 Identities=17% Similarity=0.221 Sum_probs=322.6 Q ss_pred Cchhhhhhccccccccccccccccccc-chhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPY-DPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) =+|++|+..+ -.........+.. +++. + ...+...|+.+.++++++|++||++||++||++|++++++.+. T Consensus 4 ~~~~~~~k~~----~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:94 4 ENIVTRIKKK----LIDNWIDQSASKLYDFSP--W--KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred cccchhhhhH----HhhhhhcCCccccccccc--c--cCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc Confidence 2344443222 1112222221111 1111 1 1123455788899999999999999999999999999976542 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) . .++..+.|+.+||++|++++|++.++.+++++||+|+++.|+ .|.+.+|+|++|+.|++..+..++.. . T Consensus 76 ~----~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~-----~ 146 (409) T protein:vir:94 76 V----NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL-----Y 146 (409) T ss_pred c----chhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEE-----E Confidence 2 333444445689999999999999999999999999999987 58999999999999999887655422 1 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) |.+. ...+....|+++||||+|++++.++++|+||+..+...+....++.++. ++.++..+++++..+..++++++ T Consensus 147 y~~~--~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~ 222 (409) T protein:vir:94 147 YSIH--AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKR 222 (409) T ss_pred EEEE--cCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCCCCHHHH Confidence 3322 2334556799999999999888899999999999999999999998885 44555566788889999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|++.+. ++++++++++|++|+++++++.|+||+|.++++.++||++|||||.+||...+++ +++.|++. T Consensus 223 ~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~sn~e~~~ 297 (409) T protein:vir:94 223 QQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN--FAKNEELN 297 (409) T ss_pred HHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHHH Confidence 999999998774 5688999999999999999999999999999999999999999999999865544 46689999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) +.|+++||.|+++.||++|+++|+++.+. .+.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+|+ T Consensus 298 ~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~g- 376 (409) T protein:vir:94 298 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG- 376 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC- Confidence 99999999999999999999999998886 4678999999999999999999999999999999999999999999987 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) ||++++++|+++++.....+...++++. + .++| T Consensus 377 -gD~~~~~~n~~~~~~~~~~~~~~kGG~~-------------n-----~~e~ 409 (409) T protein:vir:94 377 -GDKPLISGDLYPIDTPLELRKSLKGGDK-------------N-----VNES 409 (409) T ss_pred -cCeEeecccccccccchhhcccccCCCC-------------C-----cCCC Confidence 9999999999998776444322111110 0 0011 No 44 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=1.7e-84 Score=479.90 Aligned_cols=421 Identities=19% Similarity=0.195 Sum_probs=318.2 Q ss_pred Cchhhhhhcccccccccccccccccccchhhhccccc-ccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGAT-ASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |+-+.. .......+ ..+...++.+.++++++|++||++||++||++||+++.+++ T Consensus 1 ~~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~- 56 (723) T protein:vir:94 1 MTTFPS-----------------------GAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDG- 56 (723) T ss_pred Cccccc-----------------------CCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCC- Confidence 211110 00000011 12344567788999999999999999999999999986432 Q ss_pred ceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 80 TRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG----PNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 80 ~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~----g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) ... ..|+++.++ .+||++|++++|++.++.+++++||+|+++.+++ |.+.++++++|..+.+.........+. T Consensus 57 -~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~ 134 (723) T protein:vir:94 57 -ELD-ELHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQ 134 (723) T ss_pred -ccc-hhhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCcccee Confidence 223 345555555 5899999999999999999999999999998753 789999999998877765554433222 Q ss_pred eeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS 234 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 234 (457) . ..+.+......+....|+++|||||+.+++.++++|+||+..+..+|....++++++.++|+||++|++|++.+ .++ T Consensus 135 ~-~~~~y~~~~~~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~-~l~ 212 (723) T protein:vir:94 135 A-QIIGYVIERTDGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG-DMD 212 (723) T ss_pred e-eeeEEEEEecCceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCC Confidence 1 22223333345556789999999999999889999999999999999999999999999999999999999987 589 Q ss_pred HHHHHHHHHHHHHHhccccccCcceecc----------CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccc Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLT----------EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDA 304 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~----------~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~ 304 (457) +++.++++++|++.++|..|+|++++|+ .|++|++++++++|+||+|+++++.++||++|||||.+|+.. T Consensus 213 ~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~ 292 (723) T protein:vir:94 213 EQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGG 292 (723) T ss_pred HHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCC Confidence 9999999999999999999999999985 589999999999999999999999999999999999999642 Q ss_pred cccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 305 TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDE 384 (457) Q Consensus 305 ~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE 384 (457) .++++.+++.+.|+.+||.|++..||++||++|++..+. ..+++||...+++.|.+++++++++++++|++|+|| T Consensus 293 ----st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~g~-~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE 367 (723) T protein:vir:94 293 ----STYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDIGW-TVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDE 367 (723) T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccC-ceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 345668999999999999999999999999999987643 356777878899999999999999999999999999 Q ss_pred HHHHhCCCCCCCCCCceeeecccc--cccccccccccccCCCccC--CCCCC-CCCCCC---cccCCCCccccccccccC Q lcl|Aclame:pro 385 VRAAEDMTPLPDGLGEKYRVPLNL--GEIGEEPEPEPAPAPPAID--PPAEE-PADDEE---PDNAEGDPDEGETEDDDD 456 (457) Q Consensus 385 ~R~~~G~~p~~~~~gd~~~~~~n~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 456 (457) +|+++|+||+||+.++.++.|.+. ++.+... ++....+.. ...+. .++.+. +........+....+.++ T Consensus 368 ~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~---p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 444 (723) T protein:vir:94 368 VRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPA---PAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPGPDPQQ 444 (723) T ss_pred HHHHhCCCCCCCCcccceeccccccccCCCCCC---ccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCcccCCch Confidence 999999999999888888887643 2322211 111111000 00000 001111 111111111111122222 Q ss_pred C Q lcl|Aclame:pro 457 A 457 (457) Q Consensus 457 ~ 457 (457) . T Consensus 445 ~ 445 (723) T protein:vir:94 445 T 445 (723) T ss_pred h Confidence 2 No 45 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=2.7e-84 Score=478.70 Aligned_cols=400 Identities=16% Similarity=0.125 Sum_probs=330.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++...+..... . + ........+...+...++...++++++|++||++||+++|++||+++++.+++ T Consensus 1 Mg~f~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRA-D-----T-GYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDG 73 (406) T ss_pred Ccchhhhccccccccccc-c-----c-hhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999998765433322111 1 1 11111223344456667888999999999999999999999999999999888 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCe--EEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNA--FLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~--~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) .....++..+.++.+||+.|++++|++.++.+++++|++ |+++.++ .|.+.++||++|.+|++..+..+ . T Consensus 74 ~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~-------~ 146 (406) T protein:vir:95 74 DIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDG-------Y 146 (406) T ss_pred ceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCe-------E Confidence 888888888889999999999999999999999999765 5556676 48999999999999999877643 1 Q ss_pred EEEEeeecccceeEEeccceEEEeccC-CccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGM-MLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEE 236 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e 236 (457) .|.+. .+.|+++||||++++ .+.++++|.||+..+...|....++.+++.++|+||+.|+++++++..++++ T Consensus 147 ~~~~~-------~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e 219 (406) T protein:vir:95 147 QVLYG-------GQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAEL 219 (406) T ss_pred EEEec-------cEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHH Confidence 12211 146999999999974 6667889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhccccccCcceeccC-cceeeecc-CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 237 GLARAREAWRAANSGVDNAHRVALLTE-GAKFSKVA-MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 237 ~~~~~~~~~~~~~~~~~n~~~~~vl~~-g~~~~~~~-~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +.++++++|.+.+.+..|+++++++.. |.+++++. ++++|+||+|.++++.++||++|||||++||.. ++. T Consensus 220 ~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-------~~~ 292 (406) T protein:vir:95 220 SSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-------EFN 292 (406) T ss_pred HHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------Cch Confidence 999999999999999999999988864 45677764 689999999999999999999999999999853 234 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) +++..+|+++||.|++++||++|+++|+++.+ ++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+ T Consensus 293 ~~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~---~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~ 369 (406) T protein:vir:95 293 RDEYNNFINSTILPIAKGIEQELTRKLLISPD---LYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPK 369 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---cEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 78889999999999999999999999997643 579999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) |+ ||++++|+|+++++.....+..+++ +.++ ++++++ T Consensus 370 ~~--gd~~~~~~n~~~~~~~~~~~~~k~g-------~~~~------------~~~~~~ 406 (406) T protein:vir:95 370 EG--LSELVILENYIPLDKIGDQSKLKGG-------DNSG------------ADGQTD 406 (406) T ss_pred CC--cceeeeccCccchhhcccccccCCC-------CCCC------------CCCCCC Confidence 87 9999999999998776543322111 0000 011111 No 46 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=9.6e-85 Score=481.19 Aligned_cols=379 Identities=22% Similarity=0.245 Sum_probs=312.7 Q ss_pred Cchhhhhhccccccccccccc-----------------------c---cccccchhhhcccccccCccccCHHHHhccHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEG-----------------------R---AWEPYDPSIYNLGATASSGERVTPHDALQVSA 54 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~-----------------------~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 54 (457) ||||++||+-...+......+ + ...+..+........+.++..++.+.++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 999999999533332211110 0 00111111111111244577889999999999 Q ss_pred HHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-Eec-CCceeE Q lcl|Aclame:pro 55 VFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV-RWA-GPNIAG 132 (457) Q Consensus 55 v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i-~~~-~g~~~~ 132 (457) |++||++||++||++|++++++.. ..+...+.+..+||+.|++.+|++.++.++++ ||+|+++ .++ .|.+.+ T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~-----~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~ 154 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGR-----IIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIR 154 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCc-----cccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEE Confidence 999999999999999999997432 23344456677999999999999999999887 9999875 465 589999 Q ss_pred EEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 133 LDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKY 212 (457) Q Consensus 133 ~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~ 212 (457) ++||+|++|++..+..+.. .|++.. .+.++||||++++++.+++||+||+..+...|....+++++ T Consensus 155 L~pl~p~~v~v~~~~~g~~------~y~~~~--------~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~ 220 (409) T protein:vir:83 155 FRVVPPWLVNVELKKGARR------EYRIGG--------LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKY 220 (409) T ss_pred EEEECCcceEEEEcCCceE------EEEEcc--------ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHH Confidence 9999999999887765422 233321 23468999999998889999999999999999999999999 Q ss_pred HHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCccee-eeccCChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKF-SKVAMSPDEAQFLQTRQFQVPEIA 291 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~-~~~~~s~~d~~~~e~~~~~~~~Ia 291 (457) +.++|+||++|+|+++++..++++++++++++|++.+.+ |+|+++++.+|+++ ++++++++|+||+|.+++++++|| T Consensus 221 ~~~~f~nga~p~gil~~~~~ls~e~~~~~~~~~~~~~~~--nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa 298 (409) T protein:vir:83 221 VQNLAETGGVPLYWLGVERRLSETEAVDLMDRWIESRSK--YAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIA 298 (409) T ss_pred HHHHHhcCCCcceEeecCCCCCHHHHHHHHHHHHHhhCC--ccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHH Confidence 999999999999999999999999999999999987754 78999999999997 568999999999999999999999 Q ss_pred HHhCCCHHHhcccccccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHH Q lcl|Aclame:pro 292 RIFGVPPHLISDATNSTS-WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMEL 370 (457) Q Consensus 292 ~~fgvpp~~lg~~~~~~~-~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~ 370 (457) ++|||||++||...++++ +++++|++...|+++||.|++++||++|+++|++. +.+++||++.+++.|.++++++ T Consensus 299 ~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~----~~~~~f~~~~llr~d~~~r~~~ 374 (409) T protein:vir:83 299 ILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS----PQHLELNRDDYTRPSLVERATA 374 (409) T ss_pred HHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----CcEEEeehhhhhccCHHHHHHH Confidence 999999999998766554 56889999999999999999999999999999975 3479999999999999999999 Q ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccc Q lcl|Aclame:pro 371 WSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLG 409 (457) Q Consensus 371 ~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~ 409 (457) +++++++|+||+||+|+++||||++| ||.+- .+-+ T Consensus 375 ~~~~~~~G~lT~NE~R~~~glpp~~g--gd~l~--~~gv 409 (409) T protein:vir:83 375 YKIMIEAGVMEPNEARAMERLHSEAA--AVRLS--GGGV 409 (409) T ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCC--CcccC--CCCC Confidence 99999999999999999999999988 77662 1111 No 47 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=1.3e-82 Score=469.52 Aligned_cols=395 Identities=16% Similarity=0.144 Sum_probs=317.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccC-HHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVT-PHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |+||++-.....+.+..........+... ...+.... ..+ ...++++++|++||++||+++|++||+++++.++ T Consensus 13 m~~F~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~ 87 (413) T protein:vir:96 13 LKFFNNKRSPTEESKAKDEIPKAPQVVMT-LPNFFKEL----ISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGET 87 (413) T ss_pred CCccccCCCcchhhhhhcccccccccccc-chhhHhhh----ccchhHHHhhchHHHHHHHHHHHhhccCceEEEEecCC Confidence 67665421111110100000000000000 00000000 111 2347789999999999999999999999998888 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) +.+...++....++.+||+.|++++|++.++.+++++||+|+++.|+. +.+.+|||++|.+|++..+.. . . T Consensus 88 ~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~-~------~ 160 (413) T protein:vir:96 88 GDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDD-D------L 160 (413) T ss_pred CccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCC-e------E Confidence 877777766666678999999999999999999999999999999874 467899999999999877542 2 1 Q ss_pred EEEEeeecccceeEEeccceEEEecc-CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHH Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPG-MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEE 236 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~-~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e 236 (457) .|.+... ...++++||||+++ +++.++++|.||+.++...|....++.+++.++|+||+.|+++++++..++++ T Consensus 161 ~y~~~~~-----~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e 235 (413) T protein:vir:96 161 DYSITFD-----NKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDEL 235 (413) T ss_pred EEEEeec-----CcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHH Confidence 2333221 14688999999986 45667889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhccccccCcceeccCcc-eeeec-cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 237 GLARAREAWRAANSGVDNAHRVALLTEGA-KFSKV-AMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 237 ~~~~~~~~~~~~~~~~~n~~~~~vl~~g~-~~~~~-~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +.++++++|++.+++..|+|+++++++|. ++.++ .++++|++|+|.+++++++||++|||||.+||.. ++. T Consensus 236 ~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-------~~~ 308 (413) T protein:vir:96 236 SDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-------TYN 308 (413) T ss_pred HHHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------cch Confidence 99999999999999999999999997665 45565 4689999999999999999999999999999853 224 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) +++..+|+++||.|+++.||++||++|+++ +.+++||++.+++.|.+++++++++++++|++|+||+|+++|+||+ T Consensus 309 ~~~~~~~~~~~l~P~~~~ie~~ln~~ll~~----~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~ 384 (413) T protein:vir:96 309 KDEFNNFINTKIMSIAQVIQQTYNKLIVEE----DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPD 384 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----CcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 778889999999999999999999999874 5689999999999999999999999999999999999999999999 Q ss_pred CCCCCceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 395 ~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) |+ ||++++|+|+++++.....+..+++++ T Consensus 385 ~~--gd~~~~~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 385 AE--MDDLLVLENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred CC--cceeeecccccchhhcccccCCCCCCC Confidence 87 999999999999888776654433333 No 48 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1.7e-82 Score=468.81 Aligned_cols=390 Identities=14% Similarity=0.174 Sum_probs=311.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|++++..+.+.. +.+ .........+.++..|+.+.++++++|++||++||++||++||++++++++ T Consensus 1 MGl~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~- 71 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEK----RGY----LDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFGN- 71 (394) T ss_pred CchhhhhhhhccCCCCc----hhh----hhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCCc- Confidence 99999987654322211 111 111122334556777899999999999999999999999999999976543 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ...+|..+.|+.+||+.|++++|++.++.+++++||+|++|.++. ..+ +..+.+..+.... ..|. T Consensus 72 --~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~---~~~----~~~~~~~~~~~~~------~~~~ 136 (394) T protein:vir:62 72 --EIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQ---IHL----ASNVFTELDDNLV------EHFN 136 (394) T ss_pred --ccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecce---eec----cccceEEECCceE------EEEe Confidence 346788899999999999999999999999999999999987543 111 2344444443221 1222 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC--HHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS--EEGL 238 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~e~~ 238 (457) + ....|+++||||+|+++ .++++|+||+..+..+|....++++++.++|+||+.|+++++++...+ +++. T Consensus 137 ~-------~~~~~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~ 208 (394) T protein:vir:62 137 I-------GGHEIPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQ 208 (394) T ss_pred e-------CCEEechhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHH Confidence 1 12579999999999876 478999999999999999999999999999999999999999987765 5667 Q ss_pred HHHHHHHHHHhccccccCcceeccCcc--eeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGA--KFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~--~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) +++++.|.+.+++..|+|+++|++.|. ++.+++.++.|+||+|.++++.++||++|||||.+||... +++.|+ T Consensus 209 ~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-----~sn~e~ 283 (394) T protein:vir:62 209 SKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELI-----KEDIEK 283 (394) T ss_pred HHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-----CcCHHH Confidence 899999999999999999999997776 5568888999999999999999999999999999998542 356789 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) +.+.|+++||.|++++||++|+++|+++.+....+++||...++.. .++++++.+++++|++|+||+|+++|+||+++ T Consensus 284 ~~~~~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~--~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~ 361 (394) T protein:vir:62 284 AMMYIHNKAVRPIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVTY--SNKTNIGYNLVRTAITSPDNVADMLGFPKQNT 361 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCccccCceEEEechhhhcCH--HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 9999999999999999999999999998776666777777776655 46778899999999999999999999999999 Q ss_pred CCCceeeecccccccccccccccccCCCccCCCCCCCCC Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) ++||++++++|+++++.....+...+. .+++.+ T Consensus 362 ~~gd~~~~~~n~~~~~~~~~~~~~~kg------ge~~en 394 (394) T protein:vir:62 362 KESQAIYISNDVTEIGKKEATDGSLGG------GEENEN 394 (394) T ss_pred CCCCeeecccccccccccccccccCCC------CCCCCC Confidence 999999999999887544322111100 000000 No 49 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.5e-82 Score=467.18 Aligned_cols=396 Identities=17% Similarity=0.156 Sum_probs=314.6 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCH-HHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTP-HDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) ||||+ +|+++....... +..+. ..+.......++. ..+..+|+|++||++||++||++|++++++.++ T Consensus 1 Mg~~~-~f~~k~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~ 69 (403) T protein:vir:80 1 MGLFN-FFRRKTRSEPTN-------AISWF---LTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDN 69 (403) T ss_pred Ccccc-cccccccccccc-------hhhhh---cccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCC Confidence 99997 555543221111 10010 1111111111121 235578999999999999999999999998887 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHc--CCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQ--GNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~--G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) +.....++....|+.+||+.|++++||+.+++++++. ||||+++.++. |++.++|||+|++|++..+..+.. T Consensus 70 g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~----- 144 (403) T protein:vir:80 70 GDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQ----- 144 (403) T ss_pred ceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceE----- Confidence 7776666665666679999999999999999999985 78999998874 899999999999999887654311 Q ss_pred EEEEEeeecccceeEEeccceEEEecc-CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCH Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPRDVLHIPG-MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSE 235 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~evih~~~-~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 235 (457) ..|+ ...|+++||||++. +.+.++++|.||+..+...+....++++++.++|+||+.|++++.++..+++ T Consensus 145 ~~y~---------~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~ 215 (403) T protein:vir:80 145 IWYQ---------GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAE 215 (403) T ss_pred EEEe---------ecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCh Confidence 1121 13688999999995 5667888999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhccccccCcceeccCcc-eeeecc-CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 236 EGLARAREAWRAANSGVDNAHRVALLTEGA-KFSKVA-MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 236 e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~-~~~~~~-~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++.++.+++|.+.+.+..++|++++++.+. ++.++. ++++|+|++|.++++..+||++|||||++||... . T Consensus 216 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-------~ 288 (403) T protein:vir:80 216 LSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGK-------Y 288 (403) T ss_pred HHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-------c Confidence 999999999999999999999999987653 455554 5889999999999999999999999999998532 1 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .++...+|+++||.|++.+||++|+++|+++.+ ++++||.+.+++.|.+++++++.+++++|++|+||+|+++|+|| T Consensus 289 ~~~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~---~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p 365 (403) T protein:vir:80 289 DKDEYNNFINSTILPIAKGIEQELTRKLLISPD---LYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSP 365 (403) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---cEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 235567899999999999999999999998644 57899999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) ++| ||++++++|+++++...+.+..+.++ +++.+.+.+ T Consensus 366 ~~g--gd~~~~~~n~~pl~~~~~~~~~k~ge-------~~~~~~~~~ 403 (403) T protein:vir:80 366 KEG--LSELVILENYIPLDKIGDQNKLKGGE-------KGGADGQTD 403 (403) T ss_pred CCC--CCeEeecccccchhhccchhhccCCC-------CCCCCCCCC Confidence 987 99999999999987665443322111 011000000 No 50 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=5.2e-81 Score=460.74 Aligned_cols=441 Identities=15% Similarity=0.192 Sum_probs=318.4 Q ss_pred Cchhh--hhhccccccc-----ccccccccccccchhhhcccc----cccCccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGFWS--ALFGRGHSPA-----LDAAEGRAWEPYDPSIYNLGA----TASSGERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~~~--~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) .=||+ ++.++..-.. ......+.+.-.......... ....+..|+.+.++++++|++||++||+++|++ T Consensus 62 ~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsL 141 (945) T protein:vir:10 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) T ss_pred eeeehhhhHHHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccC Confidence 22231 2211111000 000111111000000000000 111234577889999999999999999999999 Q ss_pred ceEEEEeccCce------eeecCcchhhhccCCCCCCCHHH----HHHHHHHHHHHcCCeEEEEEec-CCceeEEEEecc Q lcl|Aclame:pro 70 PLSTYSKRGGTR------KEIDTPEWLDFPNAEPGGMGRID----ILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDP 138 (457) Q Consensus 70 p~~~~~~~~~~~------~~~~~~~~~~l~~~pn~~~~~~~----f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p 138 (457) |+++|++.+++. ....+|+++.++.+||+.|++.+ |++.++.+++++||+|+++.|+ .|++.+++|++| T Consensus 142 PlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdP 221 (945) T protein:vir:10 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) T ss_pred ceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECC Confidence 999998766553 34567888999999999999887 6677889999999999999987 589999999999 Q ss_pred ceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEE-eccCCccCC--ccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 139 TKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLH-IPGMMLPGD--FVGCSPISYARESIGLALAAQKYGAH 215 (457) Q Consensus 139 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih-~~~~~~~~~--~~G~s~~~~~~~~i~~~~~~~~~~~~ 215 (457) .+|++..+.+++..+ .|. ...++.....++++|+|| ++.+++.+. .+|+||+.++.+.|....++++++.+ T Consensus 222 s~Vti~~ddDG~~~y----~Yv--~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar 295 (945) T protein:vir:10 222 TTIKPILSEDTGIVV----GYV--QEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLD 295 (945) T ss_pred cceEEEEcCCCcEEE----EEE--EecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHH Confidence 999998887765422 122 222344455678888664 556555443 36999999999999999999999999 Q ss_pred HHH-ccCCcceEEecC----------CCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 216 FFR-NGAMPGAVVEVP----------GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 216 ~~~-n~~~~~~~~~~~----------~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) +|. ||++|+|++.++ ..+++++.+++++.|++.++| .+.++++++++|++|+++++++.|+||+|+++ T Consensus 296 ~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG-~NnG~piVLdeGmef~pLs~s~~DaQfLEsrk 374 (945) T protein:vir:10 296 YYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAE 374 (945) T ss_pred HHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCC-cccccceecCCCceEEEccCChhHHHHHHHHH Confidence 995 678999999764 557899999999999999987 55688899999999999999999999999999 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) +++++||++|||||.+||..++.++ ++.+++...|+++||+|++.+||++||++|++..+. .+++|+++.....|. T Consensus 375 fs~eeIArAFGVPP~lLG~~e~st~--SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg--~~i~fdFd~ldl~D~ 450 (945) T protein:vir:10 375 FVARKICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE--KDIKLWFKEDDLEKE 450 (945) T ss_pred HHHHHHHHHhCCCHHHcccCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--ceeEEEecchhccCH Confidence 9999999999999999998776554 557999999999999999999999999998765543 345566666667789 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc-ccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 365 KERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLN-LGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 365 ~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) +++++++++++++|+||+||+|+++|+||++| ||+++++.+ +.+.+..........++. ..+...+.+.+..++ T Consensus 451 ksraEal~kli~sGiLTiNEvRe~lGLpPIeG--GD~lli~~nn~~P~d~~~ka~~ga~p~q---~aq~~~dqp~~kGGe 525 (945) T protein:vir:10 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQ---LAQAMADQPSQQGGG 525 (945) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--cceeeeccccccccccccccccCCCCcc---cccCCCCCCCCCCCC Confidence 99999999999999999999999999999987 999999874 555554433322211111 111111111111111 Q ss_pred CCccccccccccCC Q lcl|Aclame:pro 444 GDPDEGETEDDDDA 457 (457) Q Consensus 444 ~~~~~~~~~~~~~~ 457 (457) .+++..+..+.+++ T Consensus 526 ~dEns~~psE~kda 539 (945) T protein:vir:10 526 VDENSSVPSEQKNA 539 (945) T ss_pred CCCCCCCCCcccch Confidence 11111111122223 No 51 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=1.8e-81 Score=463.29 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=308.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |||++|+..+...... . .+...+. ...+......+.+.++++++|++||++||++||++|++++.+.... T Consensus 1 mg~~~~~~~~~~~~~~-~--~~~~~~~-------~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~ 70 (403) T protein:vir:10 1 MGFKSWITEKLNPGQR-I--IRDMEPV-------SHRTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIV 70 (403) T ss_pred Ccchhhhhhccchhhh-h--hhccccc-------ccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeeccccc Confidence 9999988654332111 0 0000111 1111111223557889999999999999999999999998765422 Q ss_pred ---eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeE Q lcl|Aclame:pro 81 ---RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFE 157 (457) Q Consensus 81 ---~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~ 157 (457) .....++..+.|+.+||++|++++|++.++.+++++||+|+++.+ ..+++++++.+.+..+..+... T Consensus 71 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~-----~~l~~l~~~~~~v~~~~~~~~~----- 140 (403) T protein:vir:10 71 TYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG-----TSLYHVPAALMQVEADANKFIK----- 140 (403) T ss_pred ccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC-----ceeEeecCcceEEEEcCCceEE----- Confidence 223344444555578999999999999999999999999988753 3589999999998765433211 Q ss_pred EEEEeeecccceeEEeccceEEEeccCC----ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC Q lcl|Aclame:pro 158 AYDIDADGNEVLLGWFTPRDVLHIPGMM----LPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM 233 (457) Q Consensus 158 ~y~~~~~~~~~~~~~~~~~evih~~~~~----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 233 (457) .|.+ +. ...+.+++|||++.+. +.++++|+||+.++.+.|....++.++..++|+||++|+++++.+..+ T Consensus 141 ~~~~----~~--~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l 214 (403) T protein:vir:10 141 KFIF----NN--QINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEIL 214 (403) T ss_pred EEEe----cC--ceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC Confidence 1111 11 2357889999999643 347889999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWG 311 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~ 311 (457) +++++++++++|++.++|..|+|++++|++|++|++++. ++.|+||+|.+++++++||++|||||.+||.. ++ T Consensus 215 ~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-----~~ 289 (403) T protein:vir:10 215 NKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGG-----NN 289 (403) T ss_pred CHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----CC Confidence 999999999999999999999999999999999999985 57899999999999999999999999999853 34 Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchh--hhccHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 SGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEI--KRGAPKERMELWSLGLQNGIYSIDEVRAAE 389 (457) Q Consensus 312 ~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~--~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~ 389 (457) ++.+++.+.|+++||.|++++||++|+++|. .+++||++.+ ++.|.+++++++++++++|++|+||+|+++ T Consensus 290 sn~e~~~~~f~~~tl~P~~~~ie~~l~~~L~-------~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~ 362 (403) T protein:vir:10 290 ANIRPNIELFYYMTIIPMLNKLTSSLTFFFG-------YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSEL 362 (403) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 5678999999999999999999999999883 3567888755 889999999999999999999999999999 Q ss_pred CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 390 DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 390 G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) |+||++++++|++++|+|++........ +++.++ +...+++ T Consensus 363 gl~pi~~~~~d~~~~p~n~~~~~~~~~~-----~e~~~~----------~~~~~g~ 403 (403) T protein:vir:10 363 NLEPLDDEQMNKIRIPANVAGSATGVSG-----QEGGRP----------KGSTEGD 403 (403) T ss_pred CCCCCCcccccccccccccccccccCCC-----CcCCCC----------CCCcCCC Confidence 9999999999999999998653222111 111111 1111111 No 52 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=1.5e-80 Score=458.17 Aligned_cols=395 Identities=15% Similarity=0.153 Sum_probs=311.6 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++..... +..++.+..+.....++..|+.+.++++++|++||++||++||++|+++ T Consensus 1 M~~f~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~------- 63 (397) T protein:vir:38 1 MPLLKLNKSHSQGF----------SLNDPDWVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTS------- 63 (397) T ss_pred CcchhhhhcccCcc----------cCCchhhhhhhcCCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccc------- Confidence 99999775432211 1111222222233445778999999999999999999999999999964 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .++..+.++.+||+.|++++|++.++.+++++||||++++|+. |.+.++++++|.+|++..+.+++.. .| T Consensus 64 ----~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~-----~y 134 (397) T protein:vir:38 64 ----ESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGL-----IY 134 (397) T ss_pred ----cccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE-----EE Confidence 4677889999999999999999999999999999999999875 8899999999999999887766432 22 Q ss_pred EEee-ecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDA-DGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.. ....+..+.|+++||||++++++.+.+||.||+.++...|....++.+++.++|+||++|+++++++..+++++. T Consensus 135 ~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~ 214 (397) T protein:vir:38 135 NINFDEPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAE 214 (397) T ss_pred EEEeccccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHH Confidence 2222 223445578999999999999988889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|+..+++ .|+++++++++|++|++++.++.|++|+|++++++++||++|||||.+||...+++ ++.+ +. T Consensus 215 ~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~---~~~e-~~ 289 (397) T protein:vir:38 215 TRIARSKEISKQI-HNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQ---SSIT-QI 289 (397) T ss_pred HHHHHHHHHHhcc-cccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc---cHHH-HH Confidence 9999999877654 78999999999999999999999999999999999999999999999999865433 3344 55 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) ..|+.+||.|++..||++||++|+++.+ |++..+++.|.+++++++++++++|++|+||+|+++|++|+++ T Consensus 290 ~~~~~~~l~P~~~~ie~~ln~~l~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~-- 360 (397) T protein:vir:38 290 SGQYAKSLNRYVQAIVGELNDKLHANIS-------ANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLA-- 360 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhc-------ccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC-- Confidence 6788999999999999999999998654 4455567889999999999999999999999999999999986 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPD 447 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457) +|.+............. ...+.+.++++. +...++++ T Consensus 361 ~d~~~~~~~~~~~~~~~----------~~~~g~~~~~~~--~e~~~~~~ 397 (397) T protein:vir:38 361 KDLPDPEKEPQQAIQLI----------QQEGGENDGNNS--DERGSDPE 397 (397) T ss_pred Ccccccccccccccccc----------ccccCCCCCCCC--CCCCCCCC Confidence 66443322111110000 000000000000 00111111 No 53 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=1.4e-79 Score=452.86 Aligned_cols=381 Identities=16% Similarity=0.209 Sum_probs=308.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++...+.+..... .. .+...........++..|+.+.++++++|++||++||+++|++|++++. T Consensus 1 Mg~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~----- 69 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMV-YP-----SNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTEN----- 69 (385) T ss_pred Cccccchhcccccccccc-cc-----cchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeec----- Confidence 999986533222211111 11 1111111112223456789999999999999999999999999999863 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) +....++.+||+.|++++|++.++.+++++||+|+++.++ ..+++|+++.+|.+..+..+. .|. T Consensus 70 ------~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~---~~~~~p~~~~~v~~~~~~~~~-------~~~ 133 (385) T protein:vir:10 70 ------TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ---NLEHIPNSDVQINYLPGNMGI-------VYT 133 (385) T ss_pred ------cchhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC---ceeEeecCCceEEEEEcCCce-------EEE Confidence 3456678899999999999999999999999999999865 456788888888776654321 122 Q ss_pred EeeecccceeEEeccceEEEeccCCc--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMML--PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEG 237 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~ 237 (457) +.. ...+....|+++||||++++++ .++++|+||+..+..+|....++.+++.++|+||++|+++++++... ++++ T Consensus 134 ~~~-~~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~ 212 (385) T protein:vir:10 134 VLE-SNDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKD 212 (385) T ss_pred EEE-cCCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHH Confidence 222 2344557899999999998664 45789999999999999999999999999999999999999999766 5789 Q ss_pred HHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL-QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~-e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) .+++++.|++.+++ .|+|+++++++|++|+++++++.|++++ |.+++++++||++|||||.+||....++.++++.|+ T Consensus 213 ~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq 291 (385) T protein:vir:10 213 LESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (385) T ss_pred HHHHHHHHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHH Confidence 99999999988876 6899999999999999999999999975 999999999999999999999987777777777776 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) + ..++..||.|+++.||++|+++|++. +++|+++.+++.|.+++++++++++++|++|+||+|+++|++|+|+ T Consensus 292 ~-~~~~~~~l~P~~~~ie~~l~~~l~~~------~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~ 364 (385) T protein:vir:10 292 I-KATYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (385) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhCCc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCC Confidence 5 45556799999999999999999863 4889999999999999999999999999999999999999999998 Q ss_pred CCCceeeeccccccccccccc Q lcl|Aclame:pro 397 GLGEKYRVPLNLGEIGEEPEP 417 (457) Q Consensus 397 ~~gd~~~~~~n~~~~~~~~~~ 417 (457) +.+|.+..|.|....++.++. T Consensus 365 ~~~~~~~~~~~~~~~g~~~dn 385 (385) T protein:vir:10 365 DNLPEFKPLTTQVKGGDEGDN 385 (385) T ss_pred CCCccccCcccccCCCCCCCC Confidence 788888877654321111111 No 54 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=1.2e-78 Score=447.71 Aligned_cols=448 Identities=15% Similarity=0.162 Sum_probs=314.6 Q ss_pred Cchhhhhhc--ccccc-------------------------cccccccccccccchhhhcccccccCccccC-------H Q lcl|Aclame:pro 1 MGFWSALFG--RGHSP-------------------------ALDAAEGRAWEPYDPSIYNLGATASSGERVT-------P 46 (457) Q Consensus 1 Mg~~~~l~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~ 46 (457) ||||+++.. +..+. +.........++.......-.+.......+. . T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 84 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVL 84 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccccceecCcccccCccccChhHHHHHH Confidence 999998862 11100 0000000011111111111111111111111 1 Q ss_pred HHHhccHHHHHHHHHHHHhhccC-----------ceEEEEeccCceee----ecCcchhhhccCCCCCC-----CHHHHH Q lcl|Aclame:pro 47 HDALQVSAVFASVRLLSETIATL-----------PLSTYSKRGGTRKE----IDTPEWLDFPNAEPGGM-----GRIDIL 106 (457) Q Consensus 47 ~~~~~~~~v~~~i~~ia~~ia~~-----------p~~~~~~~~~~~~~----~~~~~~~~l~~~pn~~~-----~~~~f~ 106 (457) +.+..+|+|++||++||++||++ ++.+..+..+.... ...+.+..++.+||+.+ ++.+|+ T Consensus 85 ~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~ 164 (551) T protein:vir:80 85 KKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFV 164 (551) T ss_pred HHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHH Confidence 23445899999999999999974 45554433222211 12234556778888764 788999 Q ss_pred HHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCC Q lcl|Aclame:pro 107 SQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM 185 (457) Q Consensus 107 ~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~ 185 (457) +.++.+++++||+|++++|+ .|++.+|+||+|.+|++..+..+.........++ ...+.....|+++||||+++++ T Consensus 165 ~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~---~~~g~~~~~~~~~eiiH~~~n~ 241 (551) T protein:vir:80 165 KKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQ---VIDQKIVATFNAREMAFAVRNP 241 (551) T ss_pred HHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEE---EeCCcEEEEEcccceEEecccC Confidence 99999999999999999986 5899999999999999988776643322222222 2234455689999999999765 Q ss_pred cc---CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccCccee Q lcl|Aclame:pro 186 LP---GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAHRVAL 260 (457) Q Consensus 186 ~~---~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~~v 260 (457) .. ++.||+||+.++...|....++.+++.++|+||++|+|+|.++. .++++++++++++|++.++|..|+|++++ T Consensus 242 ~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~v 321 (551) T protein:vir:80 242 RSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPV 321 (551) T ss_pred CCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcccc Confidence 43 46789999999999999999999999999999999999998754 48999999999999999999999999876 Q ss_pred c-cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccc--------ccccchHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 261 L-TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNS--------TSWGSGLAEQNIAFTMFSLRPWLE 331 (457) Q Consensus 261 l-~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~--------~~~~~~~e~~~~~~~~~~l~P~~~ 331 (457) + ++|++|+++++++.|++|+|++++++++||++|||||.+||+...+ +.++++.+++...|+++||+|++. T Consensus 322 l~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~ 401 (551) T protein:vir:80 322 VSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLG 401 (551) T ss_pred ccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH Confidence 6 6899999999999999999999999999999999999999976543 235678999999999999999999 Q ss_pred HHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-CCCCCCceeeecccccc Q lcl|Aclame:pro 332 RIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP-LPDGLGEKYRVPLNLGE 410 (457) Q Consensus 332 ~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p-~~~~~gd~~~~~~n~~~ 410 (457) +||++||++|++.++. .+.|+++.+...+..++++++ +++.+|+||+||+|+++|||| +++ ||+++.|.|+++ T Consensus 402 ~ie~~ln~~L~~~~~~---~~~f~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~eg--GD~~~~~~~~~~ 475 (551) T protein:vir:80 402 FIEDFINKHIVAEFGD---KYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIG--GDIPLNGVIVQR 475 (551) T ss_pred HHHHHHHhhhccccCC---ceEEEeeccChhhHHHHHHHH-HHHhcCCcCHHHHHHHhCCCCCCCC--Cceeeccccccc Confidence 9999999999987653 345666677777777777765 466789999999999999998 555 999999999988 Q ss_pred cccccccccccCC---CccC------CCCCCCCCCCCcccCC---CCccccccccccC--C Q lcl|Aclame:pro 411 IGEEPEPEPAPAP---PAID------PPAEEPADDEEPDNAE---GDPDEGETEDDDD--A 457 (457) Q Consensus 411 ~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~ 457 (457) ++.....+..... ...+ .+......+.+++..+ +..+.++.++++- | T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 536 (551) T protein:vir:80 476 IGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANA 536 (551) T ss_pred ccccccccCcchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCccccccccCccccch Confidence 7665543221111 0000 0001111111111111 1111122222222 2 No 55 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1.8e-78 Score=446.81 Aligned_cols=447 Identities=14% Similarity=0.159 Sum_probs=313.5 Q ss_pred Cchhh---hh-----hcccc-cccccccccccccccchhh---hcc---------------cccccCccccCHHHHhccH Q lcl|Aclame:pro 1 MGFWS---AL-----FGRGH-SPALDAAEGRAWEPYDPSI---YNL---------------GATASSGERVTPHDALQVS 53 (457) Q Consensus 1 Mg~~~---~l-----~~~~~-~~~~~~~~~~~~~~~~~~~---~~~---------------~~~~~~~~~v~~~~~~~~~ 53 (457) |++-+ ++ |++.. .++.........++..... ..+ ......+..|.+....+.. T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~ 106 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSN 106 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHH Confidence 55432 11 01000 0000000000000100000 000 0000111222333445567 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCc----eeeecCcchhhhccC----CCCCC-CHHHHHHHHHHHHHHcCCeEEEEE Q lcl|Aclame:pro 54 AVFASVRLLSETIATLPLSTYSKRGGT----RKEIDTPEWLDFPNA----EPGGM-GRIDILSQTVLSLLLQGNAFLAVR 124 (457) Q Consensus 54 ~v~~~i~~ia~~ia~~p~~~~~~~~~~----~~~~~~~~~~~l~~~----pn~~~-~~~~f~~~~~~~~l~~G~~~~~i~ 124 (457) .|++|+.+|+.++|+|||+|+.+..++ +.....|.++.++.. |||.+ ++.+|++.++.+++++||+|++++ T Consensus 107 ~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~ 186 (574) T protein:vir:80 107 QVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKV 186 (574) T ss_pred HHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE Confidence 788888889999999999998875533 334567778777754 44554 778999999999999999999999 Q ss_pred ec-CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCcc---CCccccchhHHHH Q lcl|Aclame:pro 125 WA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLP---GDFVGCSPISYAR 200 (457) Q Consensus 125 ~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~---~~~~G~s~~~~~~ 200 (457) |+ .|++.+|+||+|.+|++..+..+........+|++. .+.....|+++||||++++... ++.||+||+.++. T Consensus 187 r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~---~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~ 263 (574) T protein:vir:80 187 FDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVI---DNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIAL 263 (574) T ss_pred ECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEe---CCceEEEEccccEEEEeccCCCCcccccccccHHHHHH Confidence 87 589999999999999998877654332222233222 3445678999999999976544 3678999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccCccee-ccCcceeeeccCChhHH Q lcl|Aclame:pro 201 ESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAHRVAL-LTEGAKFSKVAMSPDEA 277 (457) Q Consensus 201 ~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~~v-l~~g~~~~~~~~s~~d~ 277 (457) ..|..+.++.+++.++|+||++|+|+|.++. .+++++++++++.|++.++|..|+|++++ +++|++|+++++++.|+ T Consensus 264 ~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~ 343 (574) T protein:vir:80 264 KQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDM 343 (574) T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHH Confidence 9999999999999999999999999998753 47999999999999999999999999754 57899999999999999 Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHhcccccccc--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccccc Q lcl|Aclame:pro 278 QFLQTRQFQVPEIARIFGVPPHLISDATNSTS--------WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRF 349 (457) Q Consensus 278 ~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~--------~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~ 349 (457) +|+|++++++++||++|||||.+||....+++ ++++.|++.+.|+++||.|++.+||++||++|++..+. . T Consensus 344 qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~-~ 422 (574) T protein:vir:80 344 QFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFGE-K 422 (574) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-c Confidence 99999999999999999999999998776553 34678999999999999999999999999999987764 4 Q ss_pred ceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCC Q lcl|Aclame:pro 350 RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPP 429 (457) Q Consensus 350 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 429 (457) .+++|+...+...+... .+..++.+||||+||+|+++||||++| ||++++|+|+++++..........+...... T Consensus 423 ~~~~f~~~d~~~~~~~~---~~~~~~~~G~lT~NE~R~~lgl~Pi~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 497 (574) T protein:vir:80 423 YQFQFRGGDLSAQLDKL---KIIEQEGKVFRTVNEIRHDKGLEPIKG--GDVILNGVHIQAIGQALQEEQLEYQRSQDRL 497 (574) T ss_pred eEEEecccchhhHHHHH---HHHHHHhCCccCHHHHHHHhCCCCCCC--CCEeeeccceeecccccccccCCccchhccc Confidence 57778766655433222 224578899999999999999999986 9999999999999877654333222211111 Q ss_pred CCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 430 AEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+. .+...++.+..++++.++++.|++ T Consensus 498 ~~~-~~~~~~~~~~~~~~~p~~~~~d~~ 524 (574) T protein:vir:80 498 NRL-LELSGGDVEQPEPEEPKDSQNDTD 524 (574) T ss_pred ccc-ccccCCCCCCCCCCCCCCcccccc Confidence 000 000000001111111111111111 No 56 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=9.8e-79 Score=448.26 Aligned_cols=375 Identities=16% Similarity=0.175 Sum_probs=302.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++|+|..++... .+.. ....++.+.++++++|++||++||+++|++|++++++... T Consensus 1 Mg~f~~~f~~~~~~~~~---------~~~~---------~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~- 61 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWM---------YDLE---------FLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTK- 61 (385) T ss_pred CchhhhhhccCcccccc---------cchh---------hhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCcc- Confidence 99999999875442211 0111 0123456789999999999999999999999999975432 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..|.+..+| .+||+.|++++|++.++.+++++||+|+++.++++.+...+++.+..+....... + T Consensus 62 ----~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 127 (385) T protein:vir:95 62 ----EKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEGHFFVADDFEKEDELGLYSHRF----------T 127 (385) T ss_pred ----ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCCCeeeccccccccccccccccc----------e Confidence 235555555 6899999999999999999999999999998887777777777776655432211 1 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC--CCCCHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP--GTMSEEG 237 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~--~~~~~e~ 237 (457) .. ...+....+.++++||||++++++.+..+|.||+..+...+....++.. .++.|++++.++ ..+++++ T Consensus 128 ~~-~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-------~~~~~~g~l~~~~~~~~~~e~ 199 (385) T protein:vir:95 128 NV-LVNDFEFKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-------LNNQIRGILKVDATKFYNKEK 199 (385) T ss_pred ee-eecccceeeeeccccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-------hcCCCceEEEeCCccCCCHHH Confidence 11 1122334568999999999999888888999999999999877665432 234577888775 3578999 Q ss_pred HHHHHHHHHHHhccccc-cCcceeccCcceeeeccC------ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccc Q lcl|Aclame:pro 238 LARAREAWRAANSGVDN-AHRVALLTEGAKFSKVAM------SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSW 310 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~------s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~ 310 (457) .+++++.|++.+++..+ .++++++++|++|+++++ ++.|+||+|.++++.++||++|||||.+|+. + T Consensus 200 ~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~------~ 273 (385) T protein:vir:95 200 QKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLG------E 273 (385) T ss_pred HHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcC------C Confidence 99999999999988754 455889999999999975 6679999999999999999999999999962 3 Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhC Q lcl|Aclame:pro 311 GSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAED 390 (457) Q Consensus 311 ~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G 390 (457) +++.+++..+|+++||.|++.+||++||++|+++.+....+++||++.+++.|.+++++++++++++|++|+||+|+++| T Consensus 274 ~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g 353 (385) T protein:vir:95 274 MADLEKTIESYLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTG 353 (385) T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 45679999999999999999999999999999988877778999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCC Q lcl|Aclame:pro 391 MTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) Q Consensus 391 ~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) +||+++++||++++|+|+++++.....+ ++++ T Consensus 354 ~~p~~~~~gd~~~~~~n~~~~~~~kgge-------------~~~e 385 (385) T protein:vir:95 354 EEPADDPELDKFIITKNLQSADAFKGGE-------------SNEE 385 (385) T ss_pred CCCCCCCCCceeeecccceecccccCCC-------------CCCC Confidence 9999999999999999998875421110 0000 No 57 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=2.2e-78 Score=446.30 Aligned_cols=388 Identities=13% Similarity=0.162 Sum_probs=299.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||++...... ..+ ...+..|+.+.++++++|++||++||+++|++|+++++++ T Consensus 1 Mg~f~~lf~~~~~~~~---------~~~---------~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:10 1 MSILEKIFKTRKDITY---------MLD---------LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred CchhhhhhccCccccc---------ccc---------chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 9999999987543211 000 1123456778899999999999999999999999998643 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ....++....|+.+||+.|++++||+.++.++++.|++|+++.++++ ++++++..+.+......... .+. T Consensus 60 -~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~ 129 (395) T protein:vir:10 60 -RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE----LLIADSFYREEYALYDDIFK-----DVT 129 (395) T ss_pred -ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC----eEecCCccceeEeecCccee-----EEE Confidence 23345555555678999999999999999999999999987765543 45555555554443322211 111 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLA 239 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~ 239 (457) . ........++++||||++++++.+..+|.||+..+...+.... +.|.+++.++++|.++.. .++++.+ T Consensus 130 --~-~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~ 199 (395) T protein:vir:10 130 --V-KDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIE 199 (395) T ss_pred --E-cCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHH Confidence 1 1223456799999999999998889999999999988876544 346778888888888754 6899999 Q ss_pred HHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHH-----HHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 240 RAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEA-----QFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 240 ~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++++.|++.+++..+ ...++++++|++|+++++++.++ ||+|+++++.++||++|||||++||. ++++ T Consensus 200 ~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~------~~sn 273 (395) T protein:vir:10 200 KLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG------ETAD 273 (395) T ss_pred HHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC------cccC Confidence 999999988877542 23356689999999999888765 89999999999999999999999973 3456 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .+++.++|+++||.|++.+||++||++|+++.+... +++|+++.+++.|.+++++++++++++|++|+||+|+++|+|| T Consensus 274 ~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~-~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p 352 (395) T protein:vir:10 274 LEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLK-DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEP 352 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcc-cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 899999999999999999999999999998766433 4689999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ++|++||++++|+|+++++.....+....+... .+ ++ +++.|| T Consensus 353 ~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~-----kg--g~--~~~~g~ 395 (395) T protein:vir:10 353 SDNPELDEYLITKNYEKANSGENDEKEKDENTL-----KG--GD--EDESGD 395 (395) T ss_pred CCCCCCceeeeccccccccccccccCccccccc-----CC--CC--CCCCCC Confidence 999999999999999998776544322221110 00 00 011111 No 58 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=2.2e-78 Score=446.30 Aligned_cols=388 Identities=13% Similarity=0.162 Sum_probs=299.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||++...... ..+ ...+..|+.+.++++++|++||++||+++|++|+++++++ T Consensus 1 Mg~f~~lf~~~~~~~~---------~~~---------~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:95 1 MSILEKIFKTRKDITY---------MLD---------LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred CchhhhhhccCccccc---------ccc---------chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 9999999987543211 000 1123456778899999999999999999999999998643 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ....++....|+.+||+.|++++||+.++.++++.|++|+++.++++ ++++++..+.+......... .+. T Consensus 60 -~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~ 129 (395) T protein:vir:95 60 -RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE----LLIADSFYREEYALYDDIFK-----DVT 129 (395) T ss_pred -ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC----eEecCCccceeEeecCccee-----EEE Confidence 23345555555678999999999999999999999999987765543 45555555554443322211 111 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLA 239 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~ 239 (457) . ........++++||||++++++.+..+|.||+..+...+.... +.|.+++.++++|.++.. .++++.+ T Consensus 130 --~-~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~ 199 (395) T protein:vir:95 130 --V-KDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIE 199 (395) T ss_pred --E-cCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHH Confidence 1 1223456799999999999998889999999999988876544 346778888888888754 6899999 Q ss_pred HHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHH-----HHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 240 RAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEA-----QFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 240 ~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++++.|++.+++..+ ...++++++|++|+++++++.++ ||+|+++++.++||++|||||++||. ++++ T Consensus 200 ~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~------~~sn 273 (395) T protein:vir:95 200 KLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG------ETAD 273 (395) T ss_pred HHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC------cccC Confidence 999999988877542 23356689999999999888765 89999999999999999999999973 3456 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .+++.++|+++||.|++.+||++||++|+++.+... +++|+++.+++.|.+++++++++++++|++|+||+|+++|+|| T Consensus 274 ~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~-~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p 352 (395) T protein:vir:95 274 LEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLK-DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEP 352 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcc-cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 899999999999999999999999999998766433 4689999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ++|++||++++|+|+++++.....+....+... .+ ++ +++.|| T Consensus 353 ~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~-----kg--g~--~~~~g~ 395 (395) T protein:vir:95 353 SDNPELDEYLITKNYEKANSGENDEKEKDENTL-----KG--GD--EDESGD 395 (395) T ss_pred CCCCCCceeeeccccccccccccccCccccccc-----CC--CC--CCCCCC Confidence 999999999999999998776544322221110 00 00 011111 No 59 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=2.2e-78 Score=446.30 Aligned_cols=388 Identities=13% Similarity=0.162 Sum_probs=299.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++||++...... ..+ ...+..|+.+.++++++|++||++||+++|++|+++++++ T Consensus 1 Mg~f~~lf~~~~~~~~---------~~~---------~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:10 1 MSILEKIFKTRKDITY---------MLD---------LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred CchhhhhhccCccccc---------ccc---------chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 9999999987543211 000 1123456778899999999999999999999999998643 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ....++....|+.+||+.|++++||+.++.++++.|++|+++.++++ ++++++..+.+......... .+. T Consensus 60 -~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~ 129 (395) T protein:vir:10 60 -RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE----LLIADSFYREEYALYDDIFK-----DVT 129 (395) T ss_pred -ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC----eEecCCccceeEeecCccee-----EEE Confidence 23345555555678999999999999999999999999987765543 45555555554443322211 111 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLA 239 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~ 239 (457) . ........++++||||++++++.+..+|.||+..+...+.... +.|.+++.++++|.++.. .++++.+ T Consensus 130 --~-~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~ 199 (395) T protein:vir:10 130 --V-KDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIE 199 (395) T ss_pred --E-cCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHH Confidence 1 1223456799999999999998889999999999988876544 346778888888888754 6899999 Q ss_pred HHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHH-----HHHHHHHHHHHHHHHHhCCCHHHhccccccccccch Q lcl|Aclame:pro 240 RAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEA-----QFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG 313 (457) Q Consensus 240 ~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~ 313 (457) ++++.|++.+++..+ ...++++++|++|+++++++.++ ||+|+++++.++||++|||||++||. ++++ T Consensus 200 ~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~------~~sn 273 (395) T protein:vir:10 200 KLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG------ETAD 273 (395) T ss_pred HHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC------cccC Confidence 999999988877542 23356689999999999888765 89999999999999999999999973 3456 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 314 LAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP 393 (457) Q Consensus 314 ~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p 393 (457) .+++.++|+++||.|++.+||++||++|+++.+... +++|+++.+++.|.+++++++++++++|++|+||+|+++|+|| T Consensus 274 ~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~-~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p 352 (395) T protein:vir:10 274 LEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLK-DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEP 352 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcc-cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 899999999999999999999999999998766433 4689999999999999999999999999999999999999999 Q ss_pred CCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 394 LPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 394 ~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) ++|++||++++|+|+++++.....+....+... .+ ++ +++.|| T Consensus 353 ~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~-----kg--g~--~~~~g~ 395 (395) T protein:vir:10 353 SDNPELDEYLITKNYEKANSGENDEKEKDENTL-----KG--GD--EDESGD 395 (395) T ss_pred CCCCCCceeeeccccccccccccccCccccccc-----CC--CC--CCCCCC Confidence 999999999999999998776544322221110 00 00 011111 No 60 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=2.7e-77 Score=440.32 Aligned_cols=448 Identities=15% Similarity=0.166 Sum_probs=311.9 Q ss_pred Cchhhhhhccccccc-----------------------cccc----ccccccccchhhhcccccccCccccC-------H Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA-----------------------LDAA----EGRAWEPYDPSIYNLGATASSGERVT-------P 46 (457) Q Consensus 1 Mg~~~~l~~~~~~~~-----------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~-------~ 46 (457) ||||+++.+.+..+. .++. .....++.........+......... . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~ 80 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVL 80 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHHHHH Confidence 999999865322100 0000 00000111111111111111111111 1 Q ss_pred HHHhccHHHHHHHHHHHHhhccCc-----------eEEEEeccCce----eeecCcchhhhccCCCCC-----CCHHHHH Q lcl|Aclame:pro 47 HDALQVSAVFASVRLLSETIATLP-----------LSTYSKRGGTR----KEIDTPEWLDFPNAEPGG-----MGRIDIL 106 (457) Q Consensus 47 ~~~~~~~~v~~~i~~ia~~ia~~p-----------~~~~~~~~~~~----~~~~~~~~~~l~~~pn~~-----~~~~~f~ 106 (457) +.+..+|+|++||++||+.||++. |.+..+..... .....+.+..++.+||+. +++.+|+ T Consensus 81 ~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~ 160 (547) T protein:vir:63 81 KKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFV 160 (547) T ss_pred HHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHH Confidence 234568999999999999999642 33333221111 112234455667777766 4788999 Q ss_pred HHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCC Q lcl|Aclame:pro 107 SQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM 185 (457) Q Consensus 107 ~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~ 185 (457) +.++.+++++||+|++++|+ .|++.+|+||+|.+|++..+..+.........++ ...+.....|+++||||+++++ T Consensus 161 ~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~---~~~~~~~~~~~~~eiih~r~n~ 237 (547) T protein:vir:63 161 KKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQ---VIDQKIVATFNAREMAFAVRNP 237 (547) T ss_pred HHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEE---EcCCcEEEEeccccEEEecccC Confidence 99999999999999999987 5899999999999999987766543222222222 2334555689999999999865 Q ss_pred ccC---CccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccCccee Q lcl|Aclame:pro 186 LPG---DFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAHRVAL 260 (457) Q Consensus 186 ~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~~v 260 (457) ..+ ..||+||+..+...|....++++++.++|+||++|+|+|.++. .++++++++++++|++.++|..|+|++++ T Consensus 238 ~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~v 317 (547) T protein:vir:63 238 RSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPV 317 (547) T ss_pred CCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccc Confidence 443 6789999999999999999999999999999999999998764 48999999999999999999999999876 Q ss_pred c-cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccc--------ccccchHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 261 L-TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNS--------TSWGSGLAEQNIAFTMFSLRPWLE 331 (457) Q Consensus 261 l-~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~--------~~~~~~~e~~~~~~~~~~l~P~~~ 331 (457) + ++|++|+++++++.|++|+|++++++++||++|||||++||....+ +.++++++++...|+++||.|++. T Consensus 318 l~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~ 397 (547) T protein:vir:63 318 VSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLG 397 (547) T ss_pred ccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH Confidence 6 6889999999999999999999999999999999999999975543 335678999999999999999999 Q ss_pred HHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-CCCCCCceeeecccccc Q lcl|Aclame:pro 332 RIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTP-LPDGLGEKYRVPLNLGE 410 (457) Q Consensus 332 ~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p-~~~~~gd~~~~~~n~~~ 410 (457) .||++||++|++.++. .++|+++.+...+..+++.++ +++.+|+||+||+|+++||+| ++| ||+++.|.|+.+ T Consensus 398 ~ie~~ln~~L~~~~~~---~~~~~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~eg--GD~~~~~~~~~~ 471 (547) T protein:vir:63 398 FIEDFINKHIVAEFGD---KYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIG--GDIPLNGVIVQR 471 (547) T ss_pred HHHHHHHhhcccccCC---ceEEEeeccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCC--Cceeeccccccc Confidence 9999999999987653 245566666677777776655 577889999999999999998 555 999999999988 Q ss_pred ccccccccccc---CCCcc------CCCCCCCCCCCCcc---cCCCCccccccccccC--C Q lcl|Aclame:pro 411 IGEEPEPEPAP---APPAI------DPPAEEPADDEEPD---NAEGDPDEGETEDDDD--A 457 (457) Q Consensus 411 ~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~ 457 (457) ++.....+... .+... ..+.+....+++++ +.....+++..++++- | T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 532 (547) T protein:vir:63 472 IGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANA 532 (547) T ss_pred ccccccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccccCccccch Confidence 76544322111 10000 00111111111111 1111111122222222 2 No 61 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=1.8e-77 Score=441.35 Aligned_cols=378 Identities=16% Similarity=0.230 Sum_probs=300.4 Q ss_pred Cchhhhhh-cccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALF-GRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) ||||++++ +|.+...... +.+..+.........+..|+.+.++++++|++||++||+++|++|++++. T Consensus 1 Mg~~~~~~~~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~---- 69 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMVY-------PSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN---- 69 (383) T ss_pred CCccccccccccccccccc-------ccchhhhhhhccCccccccchhHhhcchHHHHHHHHHHHhhccCceeecc---- Confidence 99998753 3333222111 11111111112223455688999999999999999999999999998863 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) +....++.+||++|++++|++.++.+++++||+|+++.++ ..+++|+++.+|.+..+..+. .| T Consensus 70 -------~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~---~~~~~p~~~~~v~~~~~~~~~-------~~ 132 (383) T protein:vir:10 70 -------TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ---NLEHIPNSDVQINYLPGNMGI-------VY 132 (383) T ss_pred -------cchhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC---ceeEeecCcceEEEEEcCCce-------EE Confidence 3345677899999999999999999999999999999865 456777888777766544321 12 Q ss_pred EEeeecccceeEEeccceEEEeccCCc--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMML--PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEE 236 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e 236 (457) .+.. ...+....|+++||||+|++++ .++.+|+||+.++...|....++.+++.++|+||++|+++++++... +++ T Consensus 133 ~~~~-~~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e 211 (383) T protein:vir:10 133 TVLE-SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGK 211 (383) T ss_pred EEEE-cCCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHH Confidence 2222 2344567899999999998664 35679999999999999999999999999999999999999999776 578 Q ss_pred HHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 237 GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL-QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 237 ~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~-e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) +.+++++.|++.+++ .|+|+++++++|++|+++++++.|++++ |++++++++||++|||||.+||....++.++++.+ T Consensus 212 ~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~e 290 (383) T protein:vir:10 212 DLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID 290 (383) T ss_pred HHHHHHHHHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHH Confidence 999999999988876 6899999999999999999999999975 89999999999999999999998776677777777 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLP 395 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~ 395 (457) ++.. ++..||.|+++.||++|+++|+.. +++||++.+++.|.+++++++.+++++|++|+||+|+++|++|++ T Consensus 291 q~~~-~~~~~l~P~~~~ie~~l~~~l~~~------~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~ 363 (383) T protein:vir:10 291 QIKA-TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL 363 (383) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhCCc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccc Confidence 7765 555799999999999999999753 588999999999999999999999999999999999999999998 Q ss_pred CCCCceeeecccccccccccccccccCCCccCCCCCCCCCCC Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDE 437 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (457) + ||......+..++ +.++++ T Consensus 364 ~--~d~~~~~~~~~~~--------------------~gGd~e 383 (383) T protein:vir:10 364 P--DNLPEFKPLTNET--------------------KGGDDK 383 (383) T ss_pred C--CcccccCCCcccC--------------------CCCCCC Confidence 7 4443222111110 001111 No 62 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=2e-77 Score=441.08 Aligned_cols=385 Identities=15% Similarity=0.184 Sum_probs=303.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++..................++.+... ....++..|+.+.|+++++|++||++||++||++|++++++.. T Consensus 3 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMES-LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred chhhhhhhcccCcccccccccccccCchhhhhhh-ccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchh-- Confidence 9999876554433222222211111122222222 2234577899999999999999999999999999999986543 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||+.|++++|++.++.+++++||+|+++.|+. |++.+++|++|++|++..+.+++... | T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~-----y 145 (392) T protein:vir:74 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY-----Y 145 (392) T ss_pred ---------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEE-----E Confidence 34778999999999999999999999999999999884 89999999999999999877665322 2 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... .......++++||||++++++.+.++|+||+.++..+|....++++++.++|+||++|+++++++.....+ T Consensus 146 ~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~-- 223 (392) T protein:vir:74 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-- 223 (392) T ss_pred EEEecCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch-- Confidence 222222 23345679999999999998877799999999999999999999999999999999999999998765443 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++.++++.+.+.+..|+|+++||++|++|++++++++|+||+|+++++.++||++|||||.+||...+.+ +.+++. T Consensus 224 ~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~----~~~e~~ 299 (392) T protein:vir:74 224 DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SSIQQI 299 (392) T ss_pred HHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc----cHHHHH Confidence 2345667777888899999999999999999999999999999999999999999999999999764332 235778 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---DMTPLP 395 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~ 395 (457) ++|+++||.|+++.||++|+++|++. ++||...+++.|.+.++..+.+++++|++|+||+|+++ |+.| T Consensus 300 ~~~~~~~l~p~~~~ie~~l~~~l~~~-------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~p-- 370 (392) T protein:vir:74 300 SGMYASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP-- 370 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch-------hcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCc-- Confidence 89999999999999999999999864 55888889999999999999999999999999999986 4433 Q ss_pred CCCCceeeeccccccccccccccccc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAP 421 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~ 421 (457) + ......|+.++...++.++.+ T Consensus 371 n----e~r~~enl~~~~~Gd~~~p~p 392 (392) T protein:vir:74 371 K----DLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred c----ccchhcCCCCCCCCCCCCCCC Confidence 1 122223333322222211111 No 63 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=7.9e-77 Score=437.82 Aligned_cols=345 Identities=18% Similarity=0.256 Sum_probs=292.9 Q ss_pred hccCceEEEEeccCceeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEE Q lcl|Aclame:pro 66 IATLPLSTYSKRGGTRKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHV 143 (457) Q Consensus 66 ia~~p~~~~~~~~~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~ 143 (457) ||++|++++++.+ ..+|+++.+| .+||++|++++||+.++.+++++||+|+++.|+ .|++.+++|++|++|++ T Consensus 1 ia~lp~~~~~~~~-----~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~ 75 (348) T protein:vir:93 1 MASLPLKMYEDYK-----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (348) T ss_pred CcccceEeEecCc-----CcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEE Confidence 9999999997554 2456666766 589999999999999999999999999999986 69999999999999999 Q ss_pred EEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 144 HMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 144 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) ..+..++.. .|.+. ...+....|+++||||++++++.++++|+||+..+..++....++.+++.. .++..+ T Consensus 76 ~~~~~~~~~-----~y~~~--~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~--~~~~~~ 146 (348) T protein:vir:93 76 LIENQSREL-----YYSIH--AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLT--EMQKPD 146 (348) T ss_pred EEeCCCcEE-----EEEEE--cCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHH--hcCCCc Confidence 877654421 22222 233445679999999999988889999999999999999999999888643 344456 Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcc Q lcl|Aclame:pro 224 GAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISD 303 (457) Q Consensus 224 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~ 303 (457) ++++..+..+++++.++++++|++.+. |+++++++++|++|++++++++|+||+|+++++.++||++|||||.+||. T Consensus 147 ~~i~~~~~~l~~e~~~~~~~~~~~~~~---n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~ 223 (348) T protein:vir:93 147 SFMLKYGSNVSTEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 223 (348) T ss_pred eeEEecCCCCCHHHHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 788888999999999999999998874 56899999999999999999999999999999999999999999999997 Q ss_pred ccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 304 ATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) Q Consensus 304 ~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~ 382 (457) ..+++ +++.|++.++|+++||+|+++.||++||++|+++.+. .+.+++||.+.+++.|.+++++++++++++|++|+ T Consensus 224 ~~~~~--~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~ 301 (348) T protein:vir:93 224 RSNTN--FAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTI 301 (348) T ss_pred CCCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCH Confidence 66555 4557999999999999999999999999999998875 46789999999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCC Q lcl|Aclame:pro 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAE 431 (457) Q Consensus 383 nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 431 (457) ||+|+++|++|+|| ||++++++|+.+++.....+...+.++.+.... T Consensus 302 NE~R~~~g~~p~~g--gD~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 302 NDIREWEDLPPVEG--GDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred HHHHHHhCCCCCCC--cCeEeecccccccccchhhcccccCCCCCcCCC Confidence 99999999999987 999999999999877654433221111111000 No 64 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=1.3e-75 Score=431.15 Aligned_cols=446 Identities=13% Similarity=0.155 Sum_probs=303.8 Q ss_pred Cchhhhhh--------------------------ccccc--ccccccccccccccchhhhcccccccCccccC------- Q lcl|Aclame:pro 1 MGFWSALF--------------------------GRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVT------- 45 (457) Q Consensus 1 Mg~~~~l~--------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------- 45 (457) -.||+++. .+... +..........+|.........+.......+. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 85 (576) T protein:vir:96 6 ADIFKRLRLGRDYEDIIDTVPIDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHD 85 (576) T ss_pred HHHHHHHhccCccccchhhhhcccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHH Confidence 12222221 11000 01111111111221111111111111111111 Q ss_pred -HHHHhccHHHHHHHHHHHHhhccC-----------ceEEEEeccCce----eee----cCcchhhhccCCCCC-CCHHH Q lcl|Aclame:pro 46 -PHDALQVSAVFASVRLLSETIATL-----------PLSTYSKRGGTR----KEI----DTPEWLDFPNAEPGG-MGRID 104 (457) Q Consensus 46 -~~~~~~~~~v~~~i~~ia~~ia~~-----------p~~~~~~~~~~~----~~~----~~~~~~~l~~~pn~~-~~~~~ 104 (457) ......+|+|++||++||++||++ +|.+..+..+.. ... ..+.+..++..||+. +++.+ T Consensus 86 ~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~ 165 (576) T protein:vir:96 86 VLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQS 165 (576) T ss_pred HHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHH Confidence 122336899999999999999973 333333322211 111 123344444555555 58899 Q ss_pred HHHHHHHHHHHcCCeEEEEEec---CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEe Q lcl|Aclame:pro 105 ILSQTVLSLLLQGNAFLAVRWA---GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHI 181 (457) Q Consensus 105 f~~~~~~~~l~~G~~~~~i~~~---~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~ 181 (457) |++.++.+++++||+|++++++ .|++.+|+||+|.+|++..+.++.........++ ...+.....|+++||||+ T Consensus 166 f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~---~~~~~~~~~~~~~dii~~ 242 (576) T protein:vir:96 166 FCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQ---VINKKVVASFTSREMAMG 242 (576) T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEE---ecCCceEEEecccceEEE Confidence 9999999999999999998753 3789999999999999998887655433322222 234456678999999987 Q ss_pred ccCCccC---CccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccC Q lcl|Aclame:pro 182 PGMMLPG---DFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAH 256 (457) Q Consensus 182 ~~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~ 256 (457) +++...+ +.||+||+.++..+|....++.+++.++|+||+.|+|||+++. .+++++++++++.|++.++|..|+| T Consensus 243 ~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag 322 (576) T protein:vir:96 243 IRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSW 322 (576) T ss_pred eecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccc Confidence 7654433 6799999999999999999999999999999999999999864 5799999999999999999999999 Q ss_pred cc-eeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc---------ccchHHHHHHHHHHHHH Q lcl|Aclame:pro 257 RV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS---------WGSGLAEQNIAFTMFSL 326 (457) Q Consensus 257 ~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~---------~~~~~e~~~~~~~~~~l 326 (457) ++ +|+++|++|+++++++.|++|+|++++++++||++|||||.+||+.+.+++ +++++|++.+.|+++|| T Consensus 323 ~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL 402 (576) T protein:vir:96 323 QVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGL 402 (576) T ss_pred cceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHH Confidence 95 889999999999999999999999999999999999999999998765533 56789999999999999 Q ss_pred hhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHH--HhCCCcCHHHHHHHhCCCCCCCCCCceeee Q lcl|Aclame:pro 327 RPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLG--LQNGIYSIDEVRAAEDMTPLPDGLGEKYRV 404 (457) Q Consensus 327 ~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~--~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~ 404 (457) .|++..||++||++|++..+.. +.|+ +++.|.+++++.++.+ +.+|+||+||+|+++||||++| ||+++. T Consensus 403 ~P~~~~ie~~ln~~Ll~~~~~~---~~~~---f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~pieg--GD~~~~ 474 (576) T protein:vir:96 403 QPLLRFIEDLINTHIISEYSDK---YVFQ---FVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEG--GDVLLD 474 (576) T ss_pred HHHHHHHHHHHHhhhchhccCc---eEEE---eccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCC--cceecc Confidence 9999999999999999876532 3333 3466777777766644 5579999999999999999987 999999 Q ss_pred cccccccccccccccccCCCccCC---CC---CCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 405 PLNLGEIGEEPEPEPAPAPPAIDP---PA---EEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 405 ~~n~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) |.|+.+++..........+..... .. ......+.......+.+++++++++.. T Consensus 475 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~ 533 (576) T protein:vir:96 475 GSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTK 533 (576) T ss_pred ccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCC Confidence 999988766543222211111110 00 000000000111112222222222111 No 65 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.8e-76 Score=435.91 Aligned_cols=385 Identities=15% Similarity=0.183 Sum_probs=302.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++...++.............+...... ....++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMES-LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhh-hcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh-- Confidence 9999988765544433322222111112222111 1223567789999999999999999999999999999986443 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||+.|++++|++.++.+++++||+|+++.|+. |++.+++|++|++|++..+.+++.. .| T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~-----~y 145 (392) T protein:vir:10 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM-----YY 145 (392) T ss_pred ---------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE-----EE Confidence 35778999999999999999999999999999999884 8999999999999999987766532 23 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... .......|+++||||++++++.+.++|+||+.++..+|....++.+++.++|+||++|+++++++.....+ T Consensus 146 ~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~-- 223 (392) T protein:vir:10 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-- 223 (392) T ss_pred EEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch-- Confidence 222222 23345679999999999998877899999999999999999999999999999999999999998764433 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++.++++.+.+.+..++|+++++++|++|++++++++|+||++++++++++||++|||||.+||.....+ +.+++. T Consensus 224 ~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~----~~~~~~ 299 (392) T protein:vir:10 224 DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SSIQQI 299 (392) T ss_pred HHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc----cHHHHH Confidence 2345667777778889999999999999999999999999999999999999999999999999754322 245778 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---DMTPLP 395 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~ 395 (457) ++|+++||.|+++.||++|+++|++. ++||...+.+.|.+.+++.+.+++++|++|+||+|+++ |+.|.+ T Consensus 300 ~~f~~~~l~P~~~~ie~~l~~~L~~~-------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e 372 (392) T protein:vir:10 300 SGMYASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD 372 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc Confidence 89999999999999999999999864 45788888899999999999999999999999999987 665421 Q ss_pred CCCCceeeeccccccccccccccccc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAP 421 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~ 421 (457) .....|+.++....+.++.+ T Consensus 373 ------~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:10 373 ------LPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred ------cchhcCCCCCCCCCCCCCCC Confidence 11122222222221111111 No 66 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.8e-76 Score=435.91 Aligned_cols=385 Identities=15% Similarity=0.183 Sum_probs=302.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++...++.............+...... ....++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMES-LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhh-hcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh-- Confidence 9999988765544433322222111112222111 1223567789999999999999999999999999999986443 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||+.|++++|++.++.+++++||+|+++.|+. |++.+++|++|++|++..+.+++.. .| T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~-----~y 145 (392) T protein:vir:39 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM-----YY 145 (392) T ss_pred ---------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE-----EE Confidence 35778999999999999999999999999999999884 8999999999999999987766532 23 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... .......|+++||||++++++.+.++|+||+.++..+|....++.+++.++|+||++|+++++++.....+ T Consensus 146 ~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~-- 223 (392) T protein:vir:39 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-- 223 (392) T ss_pred EEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch-- Confidence 222222 23345679999999999998877899999999999999999999999999999999999999998764433 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) ++.++++.+.+.+..++|+++++++|++|++++++++|+||++++++++++||++|||||.+||.....+ +.+++. T Consensus 224 ~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~----~~~~~~ 299 (392) T protein:vir:39 224 DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SSIQQI 299 (392) T ss_pred HHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc----cHHHHH Confidence 2345667777778889999999999999999999999999999999999999999999999999754322 245778 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---DMTPLP 395 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~ 395 (457) ++|+++||.|+++.||++|+++|++. ++||...+.+.|.+.+++.+.+++++|++|+||+|+++ |+.|.+ T Consensus 300 ~~f~~~~l~P~~~~ie~~l~~~L~~~-------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e 372 (392) T protein:vir:39 300 SGMYASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD 372 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc Confidence 89999999999999999999999864 45788888899999999999999999999999999987 665421 Q ss_pred CCCCceeeeccccccccccccccccc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAP 421 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~ 421 (457) .....|+.++....+.++.+ T Consensus 373 ------~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:39 373 ------LPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred ------cchhcCCCCCCCCCCCCCCC Confidence 11122222222221111111 No 67 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=2.5e-76 Score=435.06 Aligned_cols=383 Identities=14% Similarity=0.174 Sum_probs=309.2 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++...++.... ...+.. ....+.+.+..+..|+.+.++++|+|++||++||++||++|+++++ T Consensus 1 M~~f~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~----- 70 (386) T protein:vir:48 1 MPIFNITNLATESPPISQ--GGFFDI---TDPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASR----- 70 (386) T ss_pred Cccccccccccccccccc--cccccc---ccchhcccccCCceechhhhhcchHHHHHHHHHHHhhccCceeecc----- Confidence 999998765544332211 111111 1223344556778899999999999999999999999999999975 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) +....++.+||+.|++.+|++.++.+++++||+|+++.|+ .|++.+++|++|+.|++.++..++.. .| T Consensus 71 ------~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~-----~y 139 (386) T protein:vir:48 71 ------KQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGI-----YY 139 (386) T ss_pred ------chhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceE-----EE Confidence 3356788999999999999999999999999999999987 58999999999999999887665432 23 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... .......|+++||||++++++.+.++|+||+..+...|....++.+++.++|+||++|+++++.+...++++. T Consensus 140 ~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~ 219 (386) T protein:vir:48 140 NITFDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFK 219 (386) T ss_pred EEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHH Confidence 332222 2345578999999999999988889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|.+. ..++|+++++++|++|++++++++|+||+|+++++.++||++|||||.+||... ++++.+++. T Consensus 220 ~~~~~~~~~~---~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~----~~~~~e~~~ 292 (386) T protein:vir:48 220 TKLSRSRQAM---KQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQG----DQQSSLEMS 292 (386) T ss_pred HHHHHHHHHh---hcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC----CcccHHHHH Confidence 9999888754 357899999999999999999999999999999999999999999999998632 355678999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) ++|+++||.|+++.||++|+++|+++. .+++...+..|....+..+++++++|++|+||+|+++|++|+++ T Consensus 293 ~~~~~~~l~P~~~~ie~~l~~~l~~~~-------~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~-- 363 (386) T protein:vir:48 293 LDLYNKAVSRYLRPFLSELSQKLSCDV-------DADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILP-- 363 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchh-------hcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCC-- Confidence 999999999999999999999998754 35566667788888889999999999999999999999999875 Q ss_pred Cceee-ecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 399 GEKYR-VPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 399 gd~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) +|... ...|..+ . +.+++..++ T Consensus 364 ~~~~~~~~~~~~~---------~-----------~gGd~~~~~ 386 (386) T protein:vir:48 364 KELPEGENPNKTT---------L-----------KGGEINGED 386 (386) T ss_pred ccchhhcCCCCCc---------c-----------CCCCCCCCC Confidence 44221 0111100 0 000000000 No 68 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=5.1e-77 Score=438.83 Aligned_cols=378 Identities=15% Similarity=0.174 Sum_probs=317.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++....++...... + .......+.+.+.++..|+.+.++++++|++||++||+++|++|++++++.. T Consensus 1 Mglf~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~-- 73 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDS---F--FDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQL-- 73 (384) T ss_pred CccccccccCcccccccchh---h--ccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchh-- Confidence 99999876544333322111 1 1111222334556678899999999999999999999999999999986443 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||++|++++|++.++.+++++||+|+++.++ .|++.+++|++|++|++..+.+++.. .| T Consensus 74 ---------~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~-----~y 139 (384) T protein:vir:49 74 ---------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGL-----YY 139 (384) T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE-----EE Confidence 3578899999999999999999999999999999987 48999999999999999876655432 23 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... ..+....|+++||||++++++.+.++|+||+.++...|....++.+++.++|+||++|+++++++...++++. T Consensus 140 ~~~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~ 219 (384) T protein:vir:49 140 NITFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFK 219 (384) T ss_pred EEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHH Confidence 333322 3345578999999999999988889999999999999999999999999999999999999999988887655 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) . +++.+.+.+..|+++++++++|++|+++++++.|+||+|.+++++++||++|||||++||.....+++.++++++. T Consensus 220 ~---~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~ 296 (384) T protein:vir:49 220 T---KQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIY 296 (384) T ss_pred H---HHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHH Confidence 4 3455566777899999999999999999999999999999999999999999999999998777777778889999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCc---c-ccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAE---T-ADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~---~-~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) ..|++.+|.|++..|+++|+++|... . .....+++|+++.+++.+.+++.+++.++.+.|+++ ||+|+.+|++|+ T Consensus 297 ~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~ 375 (384) T protein:vir:49 297 FKAVSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTL 375 (384) T ss_pred HHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCC Confidence 99999999999999999999987432 2 234567899999999999999999999999999986 999999999999 Q ss_pred CCCCCceee Q lcl|Aclame:pro 395 PDGLGEKYR 403 (457) Q Consensus 395 ~~~~gd~~~ 403 (457) +|++.+..+ T Consensus 376 ~gGd~~~~~ 384 (384) T protein:vir:49 376 KGGETNEQY 384 (384) T ss_pred CCCCCCCCC Confidence 988777766 No 69 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=2.4e-75 Score=429.63 Aligned_cols=441 Identities=12% Similarity=0.131 Sum_probs=306.4 Q ss_pred Cchhhhhhcccccccccccccccccccchhhhccccc-ccCccc----cCHHHHhccHHHHHHHHHHHHhhcc------- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGAT-ASSGER----VTPHDALQVSAVFASVRLLSETIAT------- 68 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----v~~~~~~~~~~v~~~i~~ia~~ia~------- 68 (457) +.++++-..++..+. ...+........++... ...... ...+.+-.++++++||+++++.+|. T Consensus 43 ~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~ 117 (563) T protein:vir:99 43 YQDLTKSLYGQQQAY-----AEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARY 117 (563) T ss_pred HHHHHhhhccCCCcc-----hhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhh Confidence 455544322211111 11111111111111111 111111 1123344578899999999999885 Q ss_pred ------CceEEEEeccCce--eeecCcchhhhc----cCCCCC-CCHHHHHHHHHHHHHHcCCeEEEEE--ec-CCceeE Q lcl|Aclame:pro 69 ------LPLSTYSKRGGTR--KEIDTPEWLDFP----NAEPGG-MGRIDILSQTVLSLLLQGNAFLAVR--WA-GPNIAG 132 (457) Q Consensus 69 ------~p~~~~~~~~~~~--~~~~~~~~~~l~----~~pn~~-~~~~~f~~~~~~~~l~~G~~~~~i~--~~-~g~~~~ 132 (457) +|++++.+...+. .....+.+..++ ..+++. +++.+|++.++.+++++||+|++++ |+ .|++.+ T Consensus 118 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~ 197 (563) T protein:vir:99 118 SEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEK 197 (563) T ss_pred hcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEE Confidence 5677766544332 223334444333 233333 5889999999999999999999865 55 489999 Q ss_pred EEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccC---CccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 133 LDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPG---DFVGCSPISYARESIGLALAA 209 (457) Q Consensus 133 ~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~---~~~G~s~~~~~~~~i~~~~~~ 209 (457) |+|++|.+|++..+..+........ |.+. ..+.....|+++||||++++...+ +.||+||+.++...|....++ T Consensus 198 L~pl~p~~V~v~~~~~g~~~~~~~~-y~~~--~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~ 274 (563) T protein:vir:99 198 FIAVDPSTIFYATDKKGKIIKGGKR-FVQV--VDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNT 274 (563) T ss_pred EEEeCCceeEEEECCCCceecccee-EEEE--eCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHH Confidence 9999999999998877654332222 2222 233445678999988776544333 779999999999999999999 Q ss_pred HHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccCcc-eeccCcceeeeccCChhHHHHHHHHHHH Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAHRV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQ 286 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~ 286 (457) .+++.++|+||+.|+|+|+++. .+++++++++++.|++.++|..|+|++ +|+++|++|+++++++.|++|+|+++++ T Consensus 275 ~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~ 354 (563) T protein:vir:99 275 ESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYL 354 (563) T ss_pred HHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHH Confidence 9999999999999999999764 479999999999999999999999996 7899999999999999999999999999 Q ss_pred HHHHHHHhCCCHHHhcccccccc---------ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecc Q lcl|Aclame:pro 287 VPEIARIFGVPPHLISDATNSTS---------WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLD 357 (457) Q Consensus 287 ~~~Ia~~fgvpp~~lg~~~~~~~---------~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~ 357 (457) +++||++|||||.+||+.+.++. ++++.+++.+.|+++||.||+..||++||++|++..+.. +.|+ T Consensus 355 ~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~---~~~~-- 429 (563) T protein:vir:99 355 INIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDK---YTFQ-- 429 (563) T ss_pred HHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccc---cEEE-- Confidence 99999999999999998765533 456789999999999999999999999999999876532 3343 Q ss_pred hhhhccHHHHHHHHH--HHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccC--C---CC Q lcl|Aclame:pro 358 EIKRGAPKERMELWS--LGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAID--P---PA 430 (457) Q Consensus 358 ~~~~~d~~~~~~~~~--~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~--~---~~ 430 (457) +++.|.+++.+.++ +++++|+||+||+|+++||||++| ||++++|.|+++++..........+...+ . .. T Consensus 430 -f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~g--GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (563) T protein:vir:99 430 -FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEG--GDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSL 506 (563) T ss_pred -eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCC--cceeecccccccccccccccCCCccccchhhhhcccc Confidence 35778888877664 468899999999999999999987 99999999998877665432221111100 0 00 Q ss_pred CCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 431 EEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+...++++...+.+.++.++++++++ T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (563) T protein:vir:99 507 LEGDNDDSEEGQSTDSSNDDKEIGTDA 533 (563) T ss_pred cCCCCCCCCCCCCCCCCCCcccccccc Confidence 011111111111112222222222222 No 70 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=2.4e-75 Score=429.63 Aligned_cols=441 Identities=12% Similarity=0.131 Sum_probs=306.4 Q ss_pred Cchhhhhhcccccccccccccccccccchhhhccccc-ccCccc----cCHHHHhccHHHHHHHHHHHHhhcc------- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGAT-ASSGER----VTPHDALQVSAVFASVRLLSETIAT------- 68 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----v~~~~~~~~~~v~~~i~~ia~~ia~------- 68 (457) +.++++-..++..+. ...+........++... ...... ...+.+-.++++++||+++++.+|. T Consensus 43 ~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~ 117 (563) T protein:vir:95 43 YQDLTKSLYGQQQAY-----AEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARY 117 (563) T ss_pred HHHHHhhhccCCCcc-----hhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhh Confidence 455544322211111 11111111111111111 111111 1123344578899999999999885 Q ss_pred ------CceEEEEeccCce--eeecCcchhhhc----cCCCCC-CCHHHHHHHHHHHHHHcCCeEEEEE--ec-CCceeE Q lcl|Aclame:pro 69 ------LPLSTYSKRGGTR--KEIDTPEWLDFP----NAEPGG-MGRIDILSQTVLSLLLQGNAFLAVR--WA-GPNIAG 132 (457) Q Consensus 69 ------~p~~~~~~~~~~~--~~~~~~~~~~l~----~~pn~~-~~~~~f~~~~~~~~l~~G~~~~~i~--~~-~g~~~~ 132 (457) +|++++.+...+. .....+.+..++ ..+++. +++.+|++.++.+++++||+|++++ |+ .|++.+ T Consensus 118 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~ 197 (563) T protein:vir:95 118 SEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEK 197 (563) T ss_pred hcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEE Confidence 5677766544332 223334444333 233333 5889999999999999999999865 55 489999 Q ss_pred EEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccC---CccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 133 LDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPG---DFVGCSPISYARESIGLALAA 209 (457) Q Consensus 133 ~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~---~~~G~s~~~~~~~~i~~~~~~ 209 (457) |+|++|.+|++..+..+........ |.+. ..+.....|+++||||++++...+ +.||+||+.++...|....++ T Consensus 198 L~pl~p~~V~v~~~~~g~~~~~~~~-y~~~--~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~ 274 (563) T protein:vir:95 198 FIAVDPSTIFYATDKKGKIIKGGKR-FVQV--VDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNT 274 (563) T ss_pred EEEeCCceeEEEECCCCceecccee-EEEE--eCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHH Confidence 9999999999998877654332222 2222 233445678999988776544333 779999999999999999999 Q ss_pred HHHHHHHHHccCCcceEEecCC--CCCHHHHHHHHHHHHHHhccccccCcc-eeccCcceeeeccCChhHHHHHHHHHHH Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPG--TMSEEGLARAREAWRAANSGVDNAHRV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQ 286 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~ 286 (457) .+++.++|+||+.|+|+|+++. .+++++++++++.|++.++|..|+|++ +|+++|++|+++++++.|++|+|+++++ T Consensus 275 ~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~ 354 (563) T protein:vir:95 275 ESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYL 354 (563) T ss_pred HHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHH Confidence 9999999999999999999764 479999999999999999999999996 7899999999999999999999999999 Q ss_pred HHHHHHHhCCCHHHhcccccccc---------ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecc Q lcl|Aclame:pro 287 VPEIARIFGVPPHLISDATNSTS---------WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLD 357 (457) Q Consensus 287 ~~~Ia~~fgvpp~~lg~~~~~~~---------~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~ 357 (457) +++||++|||||.+||+.+.++. ++++.+++.+.|+++||.||+..||++||++|++..+.. +.|+ T Consensus 355 ~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~---~~~~-- 429 (563) T protein:vir:95 355 INIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDK---YTFQ-- 429 (563) T ss_pred HHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccc---cEEE-- Confidence 99999999999999998765533 456789999999999999999999999999999876532 3343 Q ss_pred hhhhccHHHHHHHHH--HHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccC--C---CC Q lcl|Aclame:pro 358 EIKRGAPKERMELWS--LGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAID--P---PA 430 (457) Q Consensus 358 ~~~~~d~~~~~~~~~--~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~--~---~~ 430 (457) +++.|.+++.+.++ +++++|+||+||+|+++||||++| ||++++|.|+++++..........+...+ . .. T Consensus 430 -f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~g--GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (563) T protein:vir:95 430 -FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEG--GDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSL 506 (563) T ss_pred -eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCC--cceeecccccccccccccccCCCccccchhhhhcccc Confidence 35778888877664 468899999999999999999987 99999999998877665432221111100 0 00 Q ss_pred CCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 431 EEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+...++++...+.+.++.++++++++ T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (563) T protein:vir:95 507 LEGDNDDSEEGQSTDSSNDDKEIGTDA 533 (563) T ss_pred cCCCCCCCCCCCCCCCCCCcccccccc Confidence 011111111111112222222222222 No 71 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=2.2e-75 Score=429.87 Aligned_cols=390 Identities=16% Similarity=0.108 Sum_probs=289.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+|+++++........ ...+..+ .....++.+.++++++|++||++||+++|++|++++++++ T Consensus 1 Mg~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~-- 66 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLN------LTDTVWC------SIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGE-- 66 (395) T ss_pred CchHHHHHhhhcccccccc------cccchhh------ccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCc-- Confidence 9999999887654322111 1111111 1223456788999999999999999999999999987543 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ...++..+.|+.+||+.|++++||+.++.+++++||+|+++.++.. ++. . .+.......... .|. T Consensus 67 --~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~-----~~~-~-~~~~~~~~~~~~------~~~ 131 (395) T protein:vir:40 67 --EVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI-----YVA-D-SFTKNDKSLYEN------TYT 131 (395) T ss_pred --cccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce-----eec-C-Cccccccccccc------eee Confidence 2345555566679999999999999999999999999999877642 211 1 111111110001 111 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR 240 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~ 240 (457) .....+....+.|+++||||+++++.....++.+.+..+...+.... ....+.++..+.+++..+..+++++.++ T Consensus 132 ~v~~~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 206 (395) T protein:vir:40 132 EVTLKDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAV-----NKYKKLNSRKIIVKLKAMFGQTPEAEEK 206 (395) T ss_pred eeeecCceeeeeeccccEEEeecCCCCccccchhHHHHHHHHHHHHH-----HHHHhcCCCCceEEEecccCCCHHHHHH Confidence 11112223346799999999998765544555555554444433322 2233455566666666788899999999 Q ss_pred HHHHHHHHhccc-cccCcceeccCcceeeeccCChhHHHHHHHHHHHH---HHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 241 AREAWRAANSGV-DNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQV---PEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 241 ~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~---~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) +++.|++.+.+. .++++++++++|++|++++++++|+||+|.+++.. ++||++|||||.+||. ++++.++ T Consensus 207 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~------~~sn~e~ 280 (395) T protein:vir:40 207 LRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKG------DTVGLSE 280 (395) T ss_pred HHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC------CCcCHHH Confidence 999999988764 57888999999999999999999999999998875 7999999999999973 3456789 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLP 395 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~ 395 (457) +.+.|+++||.|++.+||++|+++||++.+. .+.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||++ T Consensus 281 ~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ 360 (395) T protein:vir:40 281 QVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVM 360 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Confidence 9999999999999999999999999998875 457899999999999999999999999999999999999999999999 Q ss_pred CCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) +++||++++|+|+++++...... .+.+++++ +.++ T Consensus 361 ~~~gD~~~~~~n~~~~~~~~~~~---------kgge~~~~--~~~~ 395 (395) T protein:vir:40 361 SPETQERFVTKNYAPLGENEEDL---------KGGDINEN--KGDS 395 (395) T ss_pred CCCCceeeecccccccccccccc---------CCCCCCCC--cCCC Confidence 99999999999998876543211 00000000 0000 No 72 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=1.4e-75 Score=430.96 Aligned_cols=368 Identities=15% Similarity=0.146 Sum_probs=286.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++|++..+.... .+. .....++.+.++++++|++||++||+++|++|++++++. T Consensus 1 Mg~f~~l~~~~~~~~~~---------~~~---------~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~--- 59 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWM---------WDL---------DFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGE--- 59 (376) T ss_pred CchhhhhhccCCccccc---------cch---------hhccccchhhhhhhHHHHHHHHHHHHhhcccceeecccc--- Confidence 99999999875432110 000 012346778899999999999999999999999998643 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ....++....|+.+||+.|++++||+.++.+++++||+|+++.+++ +.+.+++++.+..+..... + T Consensus 60 -~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~------------~ 126 (376) T protein:vir:78 60 -TSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVF------------E 126 (376) T ss_pred -ccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeee------------e Confidence 2233444445557999999999999999999999999999998775 6777888888876643221 1 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHH-HccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFF-RNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.. .+......|+++||||+++.......++.++...+...+.. ....++ .++..+.+++..+..+++++. T Consensus 127 ~~~~-~~~~~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 199 (376) T protein:vir:78 127 GVTV-KDYRYNRNFSMDDVIFLEYGNERLSAFTDGMFEDYGELFGK------MIRAQMRNFQIRGAVNFKMAGVADKDKQ 199 (376) T ss_pred eeee-ecceeeeeeccccEEEeccCCCCchhhhhHHHHHHHHHHHH------HHHHHHhcCCCceeEEEccCCCCCHHHH Confidence 1111 11223457999999999987654444444444433333222 222233 344455555666788999999 Q ss_pred HHHHHHHHHHhcccc-ccCcceeccCcceeeeccCChhH-----HHHHHHHHHHHHHHHHHhCCCHHHhccccccccccc Q lcl|Aclame:pro 239 ARAREAWRAANSGVD-NAHRVALLTEGAKFSKVAMSPDE-----AQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGS 312 (457) Q Consensus 239 ~~~~~~~~~~~~~~~-n~~~~~vl~~g~~~~~~~~s~~d-----~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~ 312 (457) +++++.|++.+++.. ++++++++++|++|+++++++.+ +||+|.++++.++||++|||||.+||. +++ T Consensus 200 ~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~------~~s 273 (376) T protein:vir:78 200 TKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHG------DMA 273 (376) T ss_pred HHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCC------CCC Confidence 999999999998864 55668889999999999988865 499999999999999999999999973 345 Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Q lcl|Aclame:pro 313 GLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMT 392 (457) Q Consensus 313 ~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~ 392 (457) +.|++.+.|+++||.|++.+||++||++|+++.+ .++.|+++.+++.|.+++++++++++++|++|+||+|+++|+| T Consensus 274 ~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~---~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~ 350 (376) T protein:vir:78 274 DLSNNMKAYMEYCIDPLTKKLEDELNAKLFTFSE---FLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAE 350 (376) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc---ceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Confidence 5789999999999999999999999999998754 4677888999999999999999999999999999999999999 Q ss_pred CCCCCCCceeeecccccccccccccc Q lcl|Aclame:pro 393 PLPDGLGEKYRVPLNLGEIGEEPEPE 418 (457) Q Consensus 393 p~~~~~gd~~~~~~n~~~~~~~~~~~ 418 (457) |+++++||++++|+|+++++...+.. T Consensus 351 p~~~g~~d~~~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 351 RVDNPELDKYLITKNYQSADEGGEDG 376 (376) T ss_pred CCCCCCCceeeeccCceehhccccCC Confidence 99999999999999999977553322 No 73 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=4.7e-75 Score=428.07 Aligned_cols=353 Identities=20% Similarity=0.273 Sum_probs=289.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++.+| .... ... .+.....++.+.++..|+.+.|+++++|++||++||++||++|+. T Consensus 1 M~~~~~f~~r-~~~~-----~~~----~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~-------- 62 (359) T protein:vir:10 1 MSILNPFERR-SSIT-----PNN----YYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI-------- 62 (359) T ss_pred Ccccchhhcc-ccCC-----CCc----chhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc-------- Confidence 9999865433 2211 111 112222344566778899999999999999999999999999983 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .++....|+.+||+.|++++||+.++.+++++||+|++|+|+ +|.+.+++|++|+.|++.... +.. .| T Consensus 63 ----~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~-~~~------~y 131 (359) T protein:vir:10 63 ----GNQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTD-DTL------TY 131 (359) T ss_pred ----cchHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcC-CeE------EE Confidence 567888999999999999999999999999999999999987 588999999999999986654 222 12 Q ss_pred EEeeecccceeEEeccceEEEeccCCc----cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCC Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMML----PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMS 234 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~ 234 (457) .+.. ..++....|+++||||++.++. .++++|+||+.++...|....+++++..++|+||++|+|+++++. .++ T Consensus 132 ~~~~-~~~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~ 210 (359) T protein:vir:10 132 EVNQ-FDDYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLS 210 (359) T ss_pred EEEe-cCCceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCC Confidence 2222 2234567899999999998653 477899999999999999999999999999999999999999975 689 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~ 314 (457) +++.+++++.|++.++ +.|+|+++||++|++|+++++++.|+||+|.++++.++||++|||||++||...+.+.++++. T Consensus 211 ~e~~~~~~~~~~~~~~-~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~ 289 (359) T protein:vir:10 211 SEAKDSIRKEFEKANG-GNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQI 289 (359) T ss_pred HHHHHHHHHHHHHHhC-ccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHH Confidence 9999999999987764 588999999999999999999999999999999999999999999999999877666677777 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~ 394 (457) +++...|+..+|.|++..|+..|++++. ++...+...|.......+.+++++|++|+||+|+++|++|+ T Consensus 290 e~~~~~~l~~~l~p~~~~l~~~l~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv 358 (359) T protein:vir:10 290 KDLYVNALNRFIEPLISELRIKCDSSIG-----------VDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGI 358 (359) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc-----------ccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 7877778788888877777777766542 23333333444455566778999999999999999999998 Q ss_pred C Q lcl|Aclame:pro 395 P 395 (457) Q Consensus 395 ~ 395 (457) = T Consensus 359 ~ 359 (359) T protein:vir:10 359 I 359 (359) T ss_pred C Confidence 5 No 74 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=4.2e-74 Score=422.88 Aligned_cols=445 Identities=17% Similarity=0.194 Sum_probs=302.8 Q ss_pred Cchhhhhhc------cccc--------------ccccccccccccccc---hhhhc---ccccccCccccC--------- Q lcl|Aclame:pro 1 MGFWSALFG------RGHS--------------PALDAAEGRAWEPYD---PSIYN---LGATASSGERVT--------- 45 (457) Q Consensus 1 Mg~~~~l~~------~~~~--------------~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~v~--------- 45 (457) |.|+..+.. ++.. +++.....+..+... ..... +...+.....++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 80 (535) T protein:vir:10 1 MAILKDLRNAFSLSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYA 80 (535) T ss_pred ChhhHHHHHHHHhhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhc Confidence 776654321 1111 011111111000000 00000 000000000011 Q ss_pred --------HHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc--eeeecCcchhhhc-cCCCCCCCHHH----HHHHHH Q lcl|Aclame:pro 46 --------PHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT--RKEIDTPEWLDFP-NAEPGGMGRID----ILSQTV 110 (457) Q Consensus 46 --------~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~--~~~~~~~~~~~l~-~~pn~~~~~~~----f~~~~~ 110 (457) .+.+....++++|+.++++.++++|++++.....+ ......|.++.+| .+||+.|++++ |+++++ T Consensus 81 ~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv 160 (535) T protein:vir:10 81 DNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKII 160 (535) T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHH Confidence 12334566677888888888889999998765432 3344566666555 68999998764 667777 Q ss_pred HHHHHc-CCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCcc- Q lcl|Aclame:pro 111 LSLLLQ-GNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLP- 187 (457) Q Consensus 111 ~~~l~~-G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~- 187 (457) .+++++ |++|++|.++ .|++.+|+||+|.+|++..+..+......+ |.+. .+.....|+++||||++++++. T Consensus 161 ~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~--~~~~---~~~~~~~~~~~eiih~~~~~~~~ 235 (535) T protein:vir:10 161 NDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKF--EQFV---SETKSVKFSERNLTFINYWNLSD 235 (535) T ss_pred HHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEE--EEEe---cCceeEEECcccEEEEeccCCCC Confidence 777665 5789999887 589999999999999998776554322222 2221 2344567999999999986643 Q ss_pred --CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC----CCCHHHHHHHHHHHHHHhccccccCcceec Q lcl|Aclame:pro 188 --GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG----TMSEEGLARAREAWRAANSGVDNAHRVALL 261 (457) Q Consensus 188 --~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl 261 (457) ++.||+||+.++...|....++.+++.++|+||++|+|+|+++. .++++++++++++|++.++|..|+++++++ T Consensus 236 ~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl 315 (535) T protein:vir:10 236 TDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPIL 315 (535) T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccc Confidence 46789999999999999999999999999999999999999875 478999999999999999999999998776 Q ss_pred c-CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccc----------chHHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 262 T-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWG----------SGLAEQNIAFTMFSLRPWL 330 (457) Q Consensus 262 ~-~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~----------~~~e~~~~~~~~~~l~P~~ 330 (457) . +|++|+++++++.|+||+|++++++++||++|||||.+||...++++++ ++.|++...|+++||.|++ T Consensus 316 ~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l 395 (535) T protein:vir:10 316 AAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLL 395 (535) T ss_pred cCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH Confidence 5 7999999999999999999999999999999999999999988776543 4578888999999999999 Q ss_pred HHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc---c Q lcl|Aclame:pro 331 ERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPL---N 407 (457) Q Consensus 331 ~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~---n 407 (457) ..||++||++|++..+. .++|+++.+++.|.+++.++++.++ +|+||+||+|+++||||++| ||++++.. | T Consensus 396 ~~ie~~ln~~Ll~~~~~---~~~f~f~~l~~~d~~~r~~~~~~~~-~g~lT~NE~R~~~gl~pieg--GD~~~~~~~~~~ 469 (535) T protein:vir:10 396 SFIEQVINDKIMRYVDT---DYRFSFTLGDAQDKLQEEQVWKLKL-ANGYFINEYRKDHGLKTVDG--LDVPGFIGSAEN 469 (535) T ss_pred HHHHHHHhhhcccccCC---eEEEEeccccccCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCCCC--ccccccccchhh Confidence 99999999999987653 4668888999999999998887665 67799999999999999987 88866533 2 Q ss_pred ccccccccccccccCCCccCCCCCCCCCCCCcc-------cCCCCccc--------cccccccCC Q lcl|Aclame:pro 408 LGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD-------NAEGDPDE--------GETEDDDDA 457 (457) Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~~~ 457 (457) +......... ..+.+.+.........+.+++. .+.+|+++ ++...+|++ T Consensus 470 ~~~~~~~~~~-~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) T protein:vir:10 470 FINATGFGQP-NVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLPKPSESDDVSNNEDA 533 (535) T ss_pred cccccccccc-cCCCCCCCccccCCccccCcccccccccccCCCCCCCCCCcCCCCCcccccccc Confidence 2221111000 0000000000000000000000 00011111 111112222 No 75 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=3.5e-74 Score=423.32 Aligned_cols=382 Identities=13% Similarity=0.082 Sum_probs=282.2 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++.+..... +..... .....++.+.++++++|++||++||+++|++|++++++++.. T Consensus 1 Mgl~d~~~~~~~~~~----------~~~~~~-------~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~ 63 (395) T protein:vir:96 1 MGILDFFSFKKSGTL----------SDDDSG-------STTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLT 63 (395) T ss_pred CcchhhhcCCCCccc----------cccccc-------cchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCccc Confidence 999998866532211 000000 001134567889999999999999999999999998754322 Q ss_pred eeeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ...|.+..+| .+||++|++++||+.++.+++++||+|+++.++.+... ++..+ ........ .| T Consensus 64 ---~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~-----~~~~~-~~~~~~~~-------~~ 127 (395) T protein:vir:96 64 ---ENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYV-----ADAFT-QDKKLSGN-------KF 127 (395) T ss_pred ---cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceec-----CCccc-cccccccc-------ee Confidence 2345555555 69999999999999999999999999999998764321 11111 11110000 11 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHH------HHHHHHHHHHccCCcceEEecCCCC Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALA------AQKYGAHFFRNGAMPGAVVEVPGTM 233 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~------~~~~~~~~~~n~~~~~~~~~~~~~~ 233 (457) ......+......++++||||+|++.+....++.+++..+...+....+ +.++...+|++++.+.+++..+... T Consensus 128 ~~v~~~~~~~~~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (395) T protein:vir:96 128 KVSRVQGQTYEKIFTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGR 207 (395) T ss_pred eeeeeccceeeeEeccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchh Confidence 1111112233467999999999998876666677666665555544433 3467888999999999999988777 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHH------HHHHHHHhCCCHHHhcccccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQ------VPEIARIFGVPPHLISDATNS 307 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~------~~~Ia~~fgvpp~~lg~~~~~ 307 (457) .++..++..+++..... .++++++++++|++|+++++++.|+|+++.+++. .++||++|||||.+||. T Consensus 208 ~~~~~~~~~~~~~~~~~--~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~---- 281 (395) T protein:vir:96 208 QPKSDKDFFKRTIEKIR--TESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG---- 281 (395) T ss_pred hHHHHHHHHHHHHHHhh--cCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC---- Confidence 77666666555544433 3456788899999999999999999999888765 58999999999999973 Q ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 308 TSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRA 387 (457) Q Consensus 308 ~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~ 387 (457) ++++.|++.++|+++||.|++.+||++|+++|+++.+... .++|+++.+++.|.+++++++++++++|++|+||+|+ T Consensus 282 --~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~-~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~ 358 (395) T protein:vir:96 282 --DIADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLE-GSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVRE 358 (395) T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcC-ceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 3466899999999999999999999999999999776533 2458889999999999999999999999999999999 Q ss_pred HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 388 AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 388 ~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) ++|+||+++++||++++|+|+++++..+.. ++.+.+. T Consensus 359 ~~gl~pi~~~~gD~~~~~~N~~~~~~~gge--------------~~~~~~~ 395 (395) T protein:vir:96 359 EIGLPELPDGLGKVLYMTKNYESVLERGGE--------------VDEEVET 395 (395) T ss_pred HhCCCCCCCCCCceeeecccceechhccCC--------------CCCCCCC Confidence 999999999999999999999886542100 0000000 No 76 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=1.7e-73 Score=419.54 Aligned_cols=427 Identities=15% Similarity=0.096 Sum_probs=297.7 Q ss_pred Cchhh-----hhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWS-----ALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |++-+ .+++....+.+. ... +..+..++... ..-++.+..+++|++||++||++||++|++++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~pp~~~-~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~ 74 (540) T protein:vir:41 6 LSIKSLEKYRAIKGDTDSQALK--EDR--------FEEYVEPKVHP-LVLLSLLQVNPYHASACSIKANDILRTGYLIDG 74 (540) T ss_pred cChhhccchhhhhccccccccc--cCC--------CCccccCCCCH-HHHHHHHHhcHHHHHHHHHHHHHHhcCCceEec Confidence 55543 121111111110 000 01111111100 011245557899999999999999999999875 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCccc-- Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLR-- 152 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~-- 152 (457) +.. .+..+ .||+.+++.+|++.++.+++++||+|++++|+. |++.+|+|++|.+|++.++...... T Consensus 75 ~~~---------~~~~~--lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~ 143 (540) T protein:vir:41 75 DDG---------GVEEL--LRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTW 143 (540) T ss_pred Ccc---------chhhh--ccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeee Confidence 433 22233 389999999999999999999999999999985 8999999999999998765433211 Q ss_pred ----ceeeEEEEEe---eecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcce Q lcl|Aclame:pro 153 ----RKVFEAYDID---ADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGA 225 (457) Q Consensus 153 ----~~~~~~y~~~---~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~ 225 (457) ...+..|.+. ..........|+++||||+|.+++.+++||+||+.++...|....++.+++.++|+||++|++ T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~g 223 (540) T protein:vir:41 144 DGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSY 223 (540) T ss_pred cCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCce Confidence 1111111111 111233445789999999999998999999999999999999999999999999999999999 Q ss_pred EEecCCCCCHHH----------HHHHHHHHHHHhccc-cccCcceecc------CcceeeeccCChhHHHHHHHHHHHHH Q lcl|Aclame:pro 226 VVEVPGTMSEEG----------LARAREAWRAANSGV-DNAHRVALLT------EGAKFSKVAMSPDEAQFLQTRQFQVP 288 (457) Q Consensus 226 ~~~~~~~~~~e~----------~~~~~~~~~~~~~~~-~n~~~~~vl~------~g~~~~~~~~s~~d~~~~e~~~~~~~ 288 (457) +++++..+++++ .+++++.|...+.+. .|+|++++|. +|++|++++++++|++|+|+++++++ T Consensus 224 iL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~ 303 (540) T protein:vir:41 224 VITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKH 303 (540) T ss_pred EEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHH Confidence 999987655432 355666666666654 5889999984 79999999999999999999999999 Q ss_pred HHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 289 EIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 289 ~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~ 368 (457) +||++|||||.+||..+.++.++++.+++.+.|+++||.|+++.||++||++|++..+. +.+++|+.+.+++.|.+++ T Consensus 304 eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~-~~~i~f~~~~ll~~D~~~~- 381 (540) T protein:vir:41 304 DIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDP-GARFVFNEEILMESEFVHN- 381 (540) T ss_pred HHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-ceEEEecchhhcchHHHHH- Confidence 99999999999999988777778889999999999999999999999999999886653 5789999999998876554 Q ss_pred HHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCC--ccCCCCCCCC-CCCCcccC-- Q lcl|Aclame:pro 369 ELWSLGLQNGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPP--AIDPPAEEPA-DDEEPDNA-- 442 (457) Q Consensus 369 ~~~~~~~~~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-- 442 (457) +.+++++|++|+||+|+.+ |++|. +|.+++|.|+.............++. +......+.. ..++..+. T Consensus 382 --~~~lv~~G~lT~NE~Re~L~g~e~g----dd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 455 (540) T protein:vir:41 382 --YALLVQCGVLTPSEVREKLFGLDGG----PDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSES 455 (540) T ss_pred --HHHHHhCCCCCHHHHHHHhCcCcCC----CcccccccccccccccccccccCCCCccccccccchhcccccCcccccc Confidence 5678999999999999854 65542 56788898886644332221111110 0000000000 00000000 Q ss_pred -----CCCcccccc---ccccCC Q lcl|Aclame:pro 443 -----EGDPDEGET---EDDDDA 457 (457) Q Consensus 443 -----~~~~~~~~~---~~~~~~ 457 (457) .+..++... ++..++ T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~ 478 (540) T protein:vir:41 456 PLEDKKKKIDEVLSDFRAEAYEN 478 (540) T ss_pred ccccccccccccccccCCccccc Confidence 111111111 111111 No 77 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=2.1e-73 Score=419.03 Aligned_cols=384 Identities=16% Similarity=0.194 Sum_probs=303.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++++...+..... . .........+.+.+.++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 1 M~~f~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~~-- 73 (386) T protein:vir:49 1 MPIFNITNLATESPPINQ---E--SFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQL-- 73 (386) T ss_pred CchhhhhccCCCCcccch---h--hhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccchh-- Confidence 999998866443322111 0 011111122334455677899999999999999999999999999999986443 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||+.|++++||+.++.+++++||+|++|.++ .|++.++++++|++|++..+..++.. .| T Consensus 74 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~-----~y 139 (386) T protein:vir:49 74 ---------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGL-----YY 139 (386) T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceE-----EE Confidence 3578899999999999999999999999999999887 58999999999999999987765432 22 Q ss_pred EEeee-cccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDAD-GNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~-~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+... ...+..+.|+++||||++++++.+.++|+||+.++...|....++.+++.++|+||+.|+++++++...++++. T Consensus 140 ~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~ 219 (386) T protein:vir:49 140 NITFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFK 219 (386) T ss_pred EEEEcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHH Confidence 23222 23345678999999999999988889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|.. +..|+|+++++++|++|++++.+++|++|+|+++++.++||++|||||.+||....++.+. ++. T Consensus 220 ~~~~~~~~~---~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~----~~~ 292 (386) T protein:vir:49 220 TKVSRSRQA---MKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSL----EMI 292 (386) T ss_pred HHHHHHHHH---hccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchH----HHH Confidence 988888765 3467899999999999999999999999999999999999999999999999754433222 455 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~ 398 (457) +.|+..+|.|++..|+++|+++|++ +++|+...+++.|.+.++..+.+++++|++|+||+|++++..++.. T Consensus 293 ~~~~~~~i~~~l~~i~~~~~~~l~~-------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~-- 363 (386) T protein:vir:49 293 YNIYFKSVSRYLRPFVSEMSKKLSC-------EVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILP-- 363 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------hhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCC-- Confidence 6789999999999999999999975 3668888999999999999999999999999999999987655432 Q ss_pred CceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 399 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) .+.. .. .. .. ....+++++.+++ T Consensus 364 ~~~~-~~-------~~----~~-------~~~~~gGd~~~~~ 386 (386) T protein:vir:49 364 KELP-DG-------KN----PN-------RTSLKGGEINEQD 386 (386) T ss_pred CcCc-ch-------hc----cC-------CCCCCCCCCCCCC Confidence 1110 00 00 00 0000011110000 No 78 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=5e-73 Score=416.97 Aligned_cols=432 Identities=13% Similarity=0.051 Sum_probs=301.7 Q ss_pred hhhhhhccccc---ccccccccccccccchhhhcccccccCccccCH----HHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 3 FWSALFGRGHS---PALDAAEGRAWEPYDPSIYNLGATASSGERVTP----HDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 3 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) ||+..|....- .++.+............+.... ..+++. +.+..+++|++||++||++||++|++++. T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~-----~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~ 75 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYV-----EPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEG 75 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccc-----cCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeec Confidence 66644432211 1111111111000000111111 122333 23446899999999999999999999864 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccc- Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRR- 153 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~- 153 (457) +... . .....||+.+++.+|++.++.+++++||+|+++.|+. |++.+|+|++|.+|++..+....... T Consensus 76 ~~~~--------~--l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~ 145 (542) T protein:vir:41 76 DDEG--------V--VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTW 145 (542) T ss_pred ccch--------h--hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeee Confidence 3321 1 1223499999999999999999999999999999985 99999999999999988765432111 Q ss_pred -----eeeEEEEEee---ecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcce Q lcl|Aclame:pro 154 -----KVFEAYDIDA---DGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGA 225 (457) Q Consensus 154 -----~~~~~y~~~~---~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~ 225 (457) ..+..|.+.. .........++++||||+|.+++.+++||+||+..+...|....++.+++.++|+||++|++ T Consensus 146 ~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~g 225 (542) T protein:vir:41 146 DGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSY 225 (542) T ss_pred cCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccE Confidence 1111121111 01112334688999999999998899999999999999999999999999999999999999 Q ss_pred EEecCC----------CCCHHHHHHHHHHHHHHhccc-cccCcceecc------CcceeeeccCChhHHHHHHHHHHHHH Q lcl|Aclame:pro 226 VVEVPG----------TMSEEGLARAREAWRAANSGV-DNAHRVALLT------EGAKFSKVAMSPDEAQFLQTRQFQVP 288 (457) Q Consensus 226 ~~~~~~----------~~~~e~~~~~~~~~~~~~~~~-~n~~~~~vl~------~g~~~~~~~~s~~d~~~~e~~~~~~~ 288 (457) +|.++. .+++++.+++++.|++.+.+. +|+|+++|++ +|++|++++++++|++|+++++++++ T Consensus 226 IL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~ 305 (542) T protein:vir:41 226 VITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKY 305 (542) T ss_pred EEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHH Confidence 998764 457889999999999998775 5788999984 79999999999999999999999999 Q ss_pred HHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 289 EIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 289 ~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~ 368 (457) +||++|||||.+||....+++++++.|++...|+++||.|++..||++||++|+++.+. ..+++|+.+.+++.|..+ T Consensus 306 ~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~-~~~~~f~~~~ll~~d~~~-- 382 (542) T protein:vir:41 306 DIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNP-KTRFKFNDETLLESDSVR-- 382 (542) T ss_pred HHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-ceEEEecchhhcchHHHH-- Confidence 99999999999999998888888889999999999999999999999999999987765 467899999998877544 Q ss_pred HHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccC-CCCCCCCCC-CCccc---- Q lcl|Aclame:pro 369 ELWSLGLQNGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAID-PPAEEPADD-EEPDN---- 441 (457) Q Consensus 369 ~~~~~~~~~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~---- 441 (457) .+..++++|++|+||+|+.+ |++|. +|.+++|.|.+.................+ .+......+ ..+.. T Consensus 383 -~~~~~v~~GilT~NE~Re~L~g~~pg----dd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~ 457 (542) T protein:vir:41 383 -NCALLVQSGVLTPAEARERLFGLDGG----PDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKL 457 (542) T ss_pred -HHHHHHhCCCCCHHHHHHhhCCCCCC----CccccccccccccccccCCcCCCCCchhhhhhcccccCccccccccccc Confidence 45678999999999999853 66653 45667787765432222111111000000 000000100 00000 Q ss_pred ----CCCCcccccc---ccccCC Q lcl|Aclame:pro 442 ----AEGDPDEGET---EDDDDA 457 (457) Q Consensus 442 ----~~~~~~~~~~---~~~~~~ 457 (457) ..++.++.+. .++-++ T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ 480 (542) T protein:vir:41 458 SAEEKKKKIDESLAEFRAEAYEA 480 (542) T ss_pred cchhhcccccchhhhhHHhHHhc Confidence 0011111111 111111 No 79 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1.3e-72 Score=414.75 Aligned_cols=406 Identities=17% Similarity=0.136 Sum_probs=297.0 Q ss_pred CHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCcee----eecCcch-hhhccCCCCCC--------CHHHHHHHHHH Q lcl|Aclame:pro 45 TPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTRK----EIDTPEW-LDFPNAEPGGM--------GRIDILSQTVL 111 (457) Q Consensus 45 ~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~----~~~~~~~-~~l~~~pn~~~--------~~~~f~~~~~~ 111 (457) =.+.+..+++|++||++||++||++|++++.+.+.... ...++.. ..+..+||+.| ++.+||+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 12334458999999999999999999999876432211 1112222 23335677655 56789999999 Q ss_pred HHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccce-----e----------------eEEEEEeeecccce Q lcl|Aclame:pro 112 SLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRK-----V----------------FEAYDIDADGNEVL 169 (457) Q Consensus 112 ~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~-----~----------------~~~y~~~~~~~~~~ 169 (457) +++++||+|++++|+. |++.+++||+|.+|++..+........ + ...+........+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 9999999999999985 999999999999999877654211000 0 00111111223455 Q ss_pred eEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-CCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 170 LGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-GTMSEEGLARAREAWRAA 248 (457) Q Consensus 170 ~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~ 248 (457) ...++++||||++.+++.+++||+||+.++...|....++.+++.++|+||++|+|++.++ ..+++++.+++++.|... T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 5689999999999999889999999999999999999999999999999999999999875 578999999999999877 Q ss_pred hc-----------cccccCcceeccCcceeeecc--------CChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 249 NS-----------GVDNAHRVALLTEGAKFSKVA--------MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 249 ~~-----------~~~n~~~~~vl~~g~~~~~~~--------~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) +. +..|+++++++..|+++++++ .+++|++|++++++++++||++|||||.+||...+++. T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~ 320 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAF 320 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCc Confidence 65 456788999998887665554 36789999999999999999999999999998766553 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAA 388 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~ 388 (457) +++.+++...|+++||.|+++.||++||++|++.... .+++++|+++.+++.|.++++++++.++++|++|+||+|++ T Consensus 321 -~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~ 399 (467) T protein:vir:31 321 -STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDE 399 (467) T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 4568899999999999999999999999999987765 56789999999999999999999999999999999999999 Q ss_pred hCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCC-C-cccCCCCcc-ccccccccCC Q lcl|Aclame:pro 389 EDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDE-E-PDNAEGDPD-EGETEDDDDA 457 (457) Q Consensus 389 ~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~ 457 (457) +|+||+++ + .+.|.+..... ...+..+.....+...+...+.. + .+..+.+.+ ++-.|..+.| T Consensus 400 ~Gl~pi~d--~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (467) T protein:vir:31 400 FGFEPFPE--E--HVYGGETLVAE--VTGGSGPGGGIGDQIEQLVEDRADEIIDSYQADLETEQLIEIGANA 465 (467) T ss_pred hCCCCCCc--c--cccCCcccccc--cccccCCCCcccCcCCCCCCCcccchHhhhhhccccchhhhhcccc Confidence 99999964 2 23332222111 11111111111111111111100 0 011111111 1111333333 No 80 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=9.7e-73 Score=415.37 Aligned_cols=377 Identities=14% Similarity=0.169 Sum_probs=294.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++++...... .........+.+.+.++..++.+.++++++|++||++||+++|++|++++++.. T Consensus 1 Mg~f~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~-- 70 (382) T protein:vir:48 1 MPIFNLATESPPDNQG--------GFFDVVDSDFLASLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKKL-- 70 (382) T ss_pred CccccccccCCccccc--------ccccchhhhccccccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecchh-- Confidence 9999998775432221 111111122334455677899999999999999999999999999999986543 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ..++.+||+.|++++|++.++.+++++||+|+++.|+. |++.+++|++|++|++.++..++.. .| T Consensus 71 ---------~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~-----~y 136 (382) T protein:vir:48 71 ---------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGI-----YY 136 (382) T ss_pred ---------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeE-----EE Confidence 35788999999999999999999999999999999984 8999999999999999887665432 23 Q ss_pred EEeeec-ccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHH Q lcl|Aclame:pro 160 DIDADG-NEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) Q Consensus 160 ~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~ 238 (457) .+.... ..+....|+++||||++++++.+.++|.||+.++..+|....++.++..++|+||+.|+++++++...++++. T Consensus 137 ~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~ 216 (382) T protein:vir:48 137 NITFDDPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFK 216 (382) T ss_pred EEEecCccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHH Confidence 332222 2344578999999999999988889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +++++.|.+. ..|+|+++|+++|++|++++.++.|+||+|.++++.++||++|||||.+||...+. ++.+++. T Consensus 217 ~~~~~~~~~~---~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~----~~~~~~~ 289 (382) T protein:vir:48 217 TKLSRSRQAM---KQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQ----QSSLEMS 289 (382) T ss_pred HHHHHHHHhh---ccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc----ccHHHHH Confidence 9888888653 45789999999999999999999999999999999999999999999999975432 3457888 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC---C Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL---P 395 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~---~ 395 (457) +.|++.||.|+++.|+++|+++|+++.+.. ....+..+.......+.+++++|++|+||+|+.++...+ + T Consensus 290 ~~~~~~~l~p~~~~i~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~ 362 (382) T protein:vir:48 290 SDLYSKAVSRYLRPFLSELSQKLSCDVDAD-------IFPAVDPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKE 362 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhh-------hhhhhccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcc Confidence 999999999999999999999999876532 222223344455566778999999999999998753222 1 Q ss_pred CCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) -+.++.+. + ..+++++.+.+ T Consensus 363 ~~~~~~~~---------------~----------~~~GGd~~~~~ 382 (382) T protein:vir:48 363 LPNGENPN---------------S----------TLKGGEEDGQD 382 (382) T ss_pred hhhhhcCC---------------C----------CCCCCCCCCCC Confidence 11111110 0 00111110000 No 81 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=5.6e-73 Score=416.68 Aligned_cols=385 Identities=12% Similarity=0.058 Sum_probs=282.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++++...... .. ... .....++.+.++++++|++||++||++||++|+++++..++. T Consensus 1 MGlf~~~~~~~~~~~~-----~~-----~~~-------~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~ 63 (395) T protein:vir:98 1 MGILDFFSFKKSGTLS-----DD-----DSG-------STTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLT 63 (395) T ss_pred CcchhhhcCCCccccc-----cc-----ccc-------hhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcc Confidence 9999988654321110 00 000 001124567789999999999999999999999999765433 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) ...++....|..+||+.|++++||+.++.+++++||+|+++.++.+.. +++..+........ . . +. T Consensus 64 --~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~-----~~~~~~~~~~~~~~-~----~--~~ 129 (395) T protein:vir:98 64 --ENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY-----VADSFTQDKKISGS-Q----F--KV 129 (395) T ss_pred --cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee-----cCCcccccccccCc-c----c--ce Confidence 234444445556999999999999999999999999999999876432 22222222111111 0 0 11 Q ss_pred EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHH--HHHHHHHHHccCCcceEEecCCCC-CHHH Q lcl|Aclame:pro 161 IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAA--QKYGAHFFRNGAMPGAVVEVPGTM-SEEG 237 (457) Q Consensus 161 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~-~~e~ 237 (457) . ...+......|+++||||+|+.++....++.+++......+...... .....+++.++..+++++...... ++++ T Consensus 130 ~-~~~~~~~~~~~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (395) T protein:vir:98 130 S-RVQGQTYEKTFTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQ 208 (395) T ss_pred e-eecCceeeeEecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHH Confidence 1 11122234679999999999987766667777777766666554443 344566778888888887665543 4555 Q ss_pred HHHHHHHHHHHhccc-cccCcceeccCcceeeeccC------ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccc Q lcl|Aclame:pro 238 LARAREAWRAANSGV-DNAHRVALLTEGAKFSKVAM------SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSW 310 (457) Q Consensus 238 ~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~~~~------s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~ 310 (457) .+..++.+++.+.+. .+.+.++++++|++|+++++ ++.++||++.++++.++||++|||||.+||. + T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~------~ 282 (395) T protein:vir:98 209 SKSDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG------D 282 (395) T ss_pred HHHHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcC------C Confidence 666666676666543 34566888999999999985 4678899999999999999999999999973 3 Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhC Q lcl|Aclame:pro 311 GSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAED 390 (457) Q Consensus 311 ~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G 390 (457) +++.|++.+.|+++||.|++.+||++||++|+++.+... .++|+++.+++.|.+++++++++++++|++|+||+|+++| T Consensus 283 ~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~~-g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g 361 (395) T protein:vir:98 283 IADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLQ-GSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIG 361 (395) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcC-cceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 456899999999999999999999999999999876533 2458888999999999999999999999999999999999 Q ss_pred CCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 391 MTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 391 ~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) +||++|++||++++|+|+++++..... .+... .| T Consensus 362 ~~Pi~~~~gD~~~~~~n~~~~~~~gge--------~~~~~---------~~ 395 (395) T protein:vir:98 362 LPELPDGLGKVLYMTKNYESVLERGGE--------VDEEV---------ET 395 (395) T ss_pred CCCCCCCCCceeeecccceecccccCC--------CCCCC---------CC Confidence 999999999999999999987532100 00000 00 No 82 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=5.3e-73 Score=416.81 Aligned_cols=360 Identities=11% Similarity=0.103 Sum_probs=273.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++......... ....+ +.. . ++...+++.++|++||++||++||++|++++++.+++ T Consensus 1 Mg~f~~~~~~~~~~~~-~~~~~-----------~~~--~----~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~ 62 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLN-NDTQR-----------VTA--W----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred CCccccchhccccccc-CCcce-----------eee--e----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccC Confidence 9999988432211111 10000 000 0 1122456789999999999999999999988765443 Q ss_pred e-----eeecCcchhhhcc-CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 81 R-----KEIDTPEWLDFPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 81 ~-----~~~~~~~~~~l~~-~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) . ....+|+++.+|. +||+.|++++||+.++.+++++|++|+++++++ |++..++| . T Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p---~------------- 126 (378) T protein:vir:94 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLF---A------------- 126 (378) T ss_pred cccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEe---c------------- Confidence 2 2345677777775 899999999999999999999999999876553 44433322 1 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) ...+.|+++||||++.+ .+...|.||+..+...|... ++ ++.++|+++++.. T Consensus 127 ---------------~~~~~~~~~diiH~~~~--~~~~~g~s~l~~~~~~i~~~----------~~-~~~~~gil~~~~~ 178 (378) T protein:vir:94 127 ---------------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK----------LE-QGKLRGLLKINAF 178 (378) T ss_pred ---------------CCeeEeeeeeeEEecCc--CCccchhHHHHHHHHHHHHH----------Hh-cccccceeeeCCc Confidence 01235788999999964 46678999999888776432 33 3568999999999 Q ss_pred CCHHHHHHHHHHHHHHhc---cccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANS---GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~---~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) +++++.++.+++|.+.+. +..++++++++++|++|++++++++++++ +.++++.++||++|||||.+|+. T Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~------ 251 (378) T protein:vir:94 179 LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------ 251 (378) T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------ Confidence 998888777777766553 34678899999999999999999999997 66789999999999999999952 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccc-------eEEEecchhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFR-------FVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~-------~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~ 382 (457) ++.+++..+|+++||.|++.+||++|+++||++.++..+ .++|+++.+++.|.+++++++++++++|++|+ T Consensus 252 --~~se~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~ 329 (378) T protein:vir:94 252 --TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCH Confidence 224688999999999999999999999999998765322 37899999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccC Q lcl|Aclame:pro 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNA 442 (457) Q Consensus 383 nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (457) ||+|+++||||++| ||++++|+|+++++.....+..++..... ++.+|. T Consensus 330 NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~~~---------~e~~n~ 378 (378) T protein:vir:94 330 NQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVTST---------DETNNQ 378 (378) T ss_pred HHHHHHhCCCCCCC--CCeeeecccccccccchhhcCCcCCCCCC---------CCCCCC Confidence 99999999999987 99999999999988776554332211100 000111 No 83 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=9.5e-73 Score=415.43 Aligned_cols=360 Identities=12% Similarity=0.105 Sum_probs=274.2 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++...... ......... ..+ .+...+++.++|++||++||++||++|++++++.+++ T Consensus 1 Mg~f~~~~~f~~~-~~~~~~~~~-------------~~~----~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~ 62 (378) T protein:vir:93 1 MNLFGKVVSFSRG-KLNNDTQRV-------------TAW----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred Cccchhhhhhhcc-ccCCCccee-------------eec----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccc Confidence 9999988432111 111100000 000 1122467889999999999999999999998876544 Q ss_pred ee-----eecCcchhhhcc-CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 81 RK-----EIDTPEWLDFPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 81 ~~-----~~~~~~~~~l~~-~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) .. ...+|+++.+|. +||++|++++||+.++.+++++||+|+++++++ |++..++ |. T Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~---~~------------- 126 (378) T protein:vir:93 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLL---FA------------- 126 (378) T ss_pred cccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEE---ec------------- Confidence 22 234567777765 899999999999999999999999999987764 3333222 11 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) .....|+++||||++.+ .+...|.|++..+...+. .++++ +.++|+++++.. T Consensus 127 ---------------~~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~-~~~~g~l~~~~~ 178 (378) T protein:vir:93 127 ---------------DDKKEYKTEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQ-GKLRGLLKINAF 178 (378) T ss_pred ---------------CCeeEeccceeEEecCc--cccchhhHHHHHHHHHHH----------HHHhc-CcccceeeeCCc Confidence 11235788999999953 456678888887766553 23444 468999999999 Q ss_pred CCHHHHHHHHHHHHHHhc---cccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANS---GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~---~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) +++++.++.+++|.+.+. ++.++++++++++|++|++++++++++++ +.++++.++||++|||||.+|+. T Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g------ 251 (378) T protein:vir:93 179 LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------ 251 (378) T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------ Confidence 998888777777776543 44578899999999999999999999997 66789999999999999999952 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccc-------eEEEecchhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFR-------FVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~-------~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~ 382 (457) ++.+++..+|+++||.|++++||++||++||++.++... .++|+++.+++.|.+++++++++++++|++|+ T Consensus 252 --~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~ 329 (378) T protein:vir:93 252 --TATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCH Confidence 234788999999999999999999999999998765322 37899999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 383 nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) ||+|+++|+||++| ||++++|+|+++++.....+..++..... .| ++++ T Consensus 330 NE~R~~~gl~p~~g--gD~~~~~~n~~~~~~~~~~~~~~~~~~~~---------~e-~~n~ 378 (378) T protein:vir:93 330 NQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVTST---------DE-TNNQ 378 (378) T ss_pred HHHHHHhCCCCCCC--CCeeeeccccccccchhhhcCccCCCCCC---------CC-CCCC Confidence 99999999999987 99999999999988776654432221100 00 0000 No 84 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=2e-72 Score=413.62 Aligned_cols=362 Identities=11% Similarity=0.090 Sum_probs=273.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||+++......... ...... . .+ .....+++.++|++||++||++||++|++++++.+++ T Consensus 1 Mg~f~~~~~~~~~~~~-~~~~~~-----------~--~~----~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~ 62 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLN-NDTQRV-----------T--AW----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred Cccchhhhhhhccccc-CCccee-----------e--ec----ccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccc Confidence 9999988432111110 100000 0 00 1123467889999999999999999999998876544 Q ss_pred ee-----eecCcchhhhcc-CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 81 RK-----EIDTPEWLDFPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 81 ~~-----~~~~~~~~~l~~-~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) .. ...+|+++.+|. +||++|++++||+.++.+++++||+|++++++++. .+++.+.|.. T Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~-g~~~~l~~~~-------------- 127 (378) T protein:vir:16 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNT-GELLDLLFAD-------------- 127 (378) T ss_pred cccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCC-ceEEEEEecC-------------- Confidence 32 234567777665 89999999999999999999999999998876421 1222222211 Q ss_pred eeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS 234 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 234 (457) ..+.|+++||||+|.+ .+...|.|++..+...+.. .+. ++.++|+++.+..++ T Consensus 128 --------------~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~~----------~~~-~~~~~g~l~~~~~l~ 180 (378) T protein:vir:16 128 --------------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT----------KLE-QGKLRGLLKINAFLD 180 (378) T ss_pred --------------CeeEecccceEEecCc--cCccchhHHHHHHHHHHHH----------HHh-cCccceeeEeCCcCC Confidence 1235788999999963 4566788888877766532 233 457889999999999 Q ss_pred HHHHHHHHHHHHHHhc---cccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccc Q lcl|Aclame:pro 235 EEGLARAREAWRAANS---GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWG 311 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~---~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~ 311 (457) +++.++.+++|++.+. ++.++|+++++++|++|++++++++++++ +.+++++++||++|||||.+|+. T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g-------- 251 (378) T protein:vir:16 181 IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG-------- 251 (378) T ss_pred HHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC-------- Confidence 9888777777776653 44678999999999999999999999997 45689999999999999999952 Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccc-------eEEEecchhhhccHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 312 SGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFR-------FVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDE 384 (457) Q Consensus 312 ~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~-------~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE 384 (457) ++.+++..+|+.+||.|++++||++|+++||++.++..+ .++|+++.+++.|.+++++++++++++|++|+|| T Consensus 252 ~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE 331 (378) T protein:vir:16 252 TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 234788999999999999999999999999998765322 3789999999999999999999999999999999 Q ss_pred HHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 385 VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 385 ~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) +|+++|+||+|| ||++++|+|+++++.....+...+..... . +++++ T Consensus 332 ~R~~~g~~p~~g--gD~~~~~~n~~~~~~~~~~~~~~~~~~~~---------~-e~~ne 378 (378) T protein:vir:16 332 LLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVTST---------D-ETNNQ 378 (378) T ss_pred HHHHhCCCCCCC--CCeEeeccccccccchhhhcCccCCCCCC---------C-CCCCC Confidence 999999999987 99999999999988776554322111100 0 00011 No 85 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=2.6e-70 Score=402.05 Aligned_cols=360 Identities=11% Similarity=0.099 Sum_probs=265.6 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++........ .... +.+ ..++...++++++|++||++||++||++|++++++.+++ T Consensus 1 M~~f~k~~~~~~~~~~-~~~~-------~~~----------~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 62 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLN-NDTQ-------RVT----------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred Cchhhhhhhhhhcccc-cCCc-------cee----------eeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccc Confidence 9999998543222111 1000 000 112223567889999999999999999999999876544 Q ss_pred ee-----eecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CCceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 81 RK-----EIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GPNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 81 ~~-----~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) .. ...+|+++.+| .+||++|++++||+.++.+++++||+|++++.. .|.+...++. T Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~---------------- 126 (378) T protein:vir:85 63 VGSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFA---------------- 126 (378) T ss_pred cccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEec---------------- Confidence 32 34556666666 589999999999999999999999999886432 2332211110 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) ...+.|.++||||++.+...++ +.+.+..+...+ ...++ ++.++|+++.+.. T Consensus 127 ---------------~~~~~~~~~dvih~~~~~~~~~--~~~~~~~a~~~~----------~~~~~-~~~~~g~l~~~~~ 178 (378) T protein:vir:85 127 ---------------NDKKEYKPEELVRLVSPFYINE--DTSILDNALASI----------QTKLE-QGKLRGLLKINAF 178 (378) T ss_pred ---------------CCCEEEcccceEEEecCcCccc--hhhHHHHHHHHH----------HHHHh-cCCcceEEEeCCc Confidence 0124577899999986432222 233333333222 23344 4578999999999 Q ss_pred CCHHHHHHHHHHHHHHh---ccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAAN---SGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~---~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) +++++.++.+++|++.+ .++.++++++++++|++|++++++++++++ +.++++.++||++|||||.+|+. T Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------ 251 (378) T protein:vir:85 179 LDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILLG------ 251 (378) T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------ Confidence 99988888887776554 355678999999999999999999999996 67899999999999999999952 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccc-------eEEEecchhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFR-------FVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~-------~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~ 382 (457) ++.+++..+|+++||.|++.+||++|+++||++.++... .+.|+.+.+++.|.+++++++++++++|++|+ T Consensus 252 --s~~e~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~ 329 (378) T protein:vir:85 252 --TATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCH Confidence 335788899999999999999999999999998765322 36799999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 383 nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) ||+|+++|+||++| ||++++|+|+++++.....+...++.. +.++++++ T Consensus 330 NE~R~~lgl~p~~g--GD~~~~~~N~~~~~~~~~~~~~~~~~~----------~~~e~~n~ 378 (378) T protein:vir:85 330 NQLLVKMGEQPIEG--GDIYIANLNAVAVKNLSDLQGSRKDVA----------STDETNNQ 378 (378) T ss_pred HHHHHHhCCCCCCC--CCeEeecccccccccchhhcCccCCCC----------CCCCCCCC Confidence 99999999999987 999999999999887765543322110 00000000 No 86 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=4.8e-70 Score=400.59 Aligned_cols=360 Identities=10% Similarity=0.102 Sum_probs=264.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||++++..+....... . ..+...+....+++.++|++||++||++||++|++++++..++ T Consensus 1 M~if~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~ 62 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNND-T-----------------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred CchhHHhHhhhhcccccC-c-----------------ceeeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeecccc Confidence 999999865332111110 0 0001112233467789999999999999999999998865433 Q ss_pred e-----eeecCcchhhhc-cCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-c-CCceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 81 R-----KEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-A-GPNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 81 ~-----~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~-~g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) . .....|+++.+| .+||+.|++++||+.++.+++++|++|++++. + .|.+..+++. T Consensus 63 ~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~---------------- 126 (378) T protein:vir:94 63 VGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA---------------- 126 (378) T ss_pred cccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe---------------- Confidence 2 123445555555 68999999999999999999999999998543 2 2433222111 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) ...+.|+++||||++.+...+ -+.+++..+...+. ..+++ +.++|+++.+.. T Consensus 127 ---------------~~~~~~~~~dvih~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~-~~~~g~l~~~~~ 178 (378) T protein:vir:94 127 ---------------NDKKEYKPEELVRLTSPFYIN--EDTSILDNALASIQ----------TKLEQ-GKLRGLLKINAF 178 (378) T ss_pred ---------------cCcEEechhceeeecCcCCcc--cchhHHHHHHHHHH----------HHHhh-CCcccceeeCCc Confidence 012468899999999655333 24455555544332 22333 468899999999 Q ss_pred CCHHHHHHHHHHHHHHh---ccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAAN---SGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~---~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) +++++.++.+++|++.+ .+..++++++++++|++|+++++++.++++ +.++++.++||++|||||.+|+. T Consensus 179 l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g------ 251 (378) T protein:vir:94 179 LDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------ 251 (378) T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcC------ Confidence 99877666666665543 344677889999999999999999999996 77899999999999999999952 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccccc-------ceEEEecchhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRF-------RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~-------~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~ 382 (457) .+.+++..+|+++||.|++.+||++||++||++.++.. ..++|+++.+++.|.+++++++++++++|++|+ T Consensus 252 --~~~e~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~ 329 (378) T protein:vir:94 252 --TATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCH Confidence 22368889999999999999999999999998766432 247799999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 383 nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) ||+|+++|+||++| ||++++|+|+++++...+.+....... ...+++++ T Consensus 330 NE~R~~~g~~p~~g--gd~~~~~~n~~~~~~~~~~~~~~~~~~----------~~~e~~n~ 378 (378) T protein:vir:94 330 NQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGNRKDVT----------STDETNNQ 378 (378) T ss_pred HHHHHHhCCCCCCC--CCeeeecccccchhcchhcccccCCCC----------CCCCCCCC Confidence 99999999999987 999999999999887776644322111 00000000 No 87 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=7.5e-68 Score=388.59 Aligned_cols=436 Identities=16% Similarity=0.162 Sum_probs=303.4 Q ss_pred Cchhhhhhcccccccccc------------cccccccccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA------------AEGRAWEPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia 67 (457) |.=-. +..++.++.. ..+... +.+-....-+.......+.....+.+ ++++++||++++++|| T Consensus 1 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~ia 76 (651) T protein:vir:99 1 MTDTT---GETQETKVHVEGLGGEADLAKSPNSTQI-PDHRIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYEV 76 (651) T ss_pred CCCcc---ceeeeeEEEeeccccccccccccccccc-chhhhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhh Confidence 33221 1111111100 011110 01111111111111112233444444 8999999999999999 Q ss_pred cCceEEEEecc---Cceee-----------ecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeE Q lcl|Aclame:pro 68 TLPLSTYSKRG---GTRKE-----------IDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAG 132 (457) Q Consensus 68 ~~p~~~~~~~~---~~~~~-----------~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~ 132 (457) +++|.+....+ ..... ..++.+......+|+.+++.+|++.++.|++.+|++|+++.+++ +.+.. T Consensus 77 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~ 156 (651) T protein:vir:99 77 GFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVG 156 (651) T ss_pred ccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhh Confidence 99998876332 11010 12233444456778999999999999999999999999998874 77888 Q ss_pred EEEeccceeEEEEcCCCcc--------------c---------------ceeeEE------------------------- Q lcl|Aclame:pro 133 LDVLDPTKIHVHMVMVDGL--------------R---------------RKVFEA------------------------- 158 (457) Q Consensus 133 ~~~l~p~~v~~~~~~~~~~--------------~---------------~~~~~~------------------------- 158 (457) ++.+++..+++..+..... . ..+... T Consensus 157 L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 236 (651) T protein:vir:99 157 LAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYRE 236 (651) T ss_pred hhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEecc Confidence 8888888765543211000 0 000000 Q ss_pred ---------------EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 159 ---------------YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 159 ---------------y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) +.+ ..........++++||||++.+++.++++|+||+..+..+|.++.++.+++.++|+||++| T Consensus 237 d~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p 315 (651) T protein:vir:99 237 DEESEREPIFVDRETGDV-TTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIP 315 (651) T ss_pred CcceeeeeecccceeeeE-EEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 000 0112233456889999999999888999999999999999999999999999999999999 Q ss_pred ceEEecCC-CCCHHHHHHHHHHHHHHhccccccCcceeccC-----------cceeeeccCCh-hHHHHHHHHHHHHHHH Q lcl|Aclame:pro 224 GAVVEVPG-TMSEEGLARAREAWRAANSGVDNAHRVALLTE-----------GAKFSKVAMSP-DEAQFLQTRQFQVPEI 290 (457) Q Consensus 224 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~-----------g~~~~~~~~s~-~d~~~~e~~~~~~~~I 290 (457) +++|++++ .+++++.+++++.|++.+. |+|++++|+. |++|+++++++ +|+||+|++++++++| T Consensus 316 ~gil~~~~~~ls~e~~~~lr~~~~~~~~---nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eI 392 (651) T protein:vir:99 316 RMVIKVTGGELSEESKRDLRQMLNGLRE---ESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEI 392 (651) T ss_pred ceEEEecCCCCCHHHHHHHHHHHHHHhc---cCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHH Confidence 99999875 5899999999999998654 5788888865 99999999886 5999999999999999 Q ss_pred HHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccc-c--ceEEEecchhhhccHHHH Q lcl|Aclame:pro 291 ARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR-F--RFVKFNLDEIKRGAPKER 367 (457) Q Consensus 291 a~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~-~--~~~~f~~~~~~~~d~~~~ 367 (457) |++|||||.+||...++++ ++.|++.+.|+++||.|++..||++||++|+++.+.. + .+++|+...+++.|.+++ T Consensus 393 a~afgVPp~~lG~~~~~~~--sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~ 470 (651) T protein:vir:99 393 AKVLEVPPVKIGVTDSANR--SNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLA 470 (651) T ss_pred HHHhCCCHHHhccCCCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHH Confidence 9999999999998876554 5589999999999999999999999999999987653 2 466788888999999999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCc- Q lcl|Aclame:pro 368 MELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP- 446 (457) Q Consensus 368 ~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 446 (457) ++++..++++|++|+||+|+++||||+++++||.++.+.++...+....... ... ...+.+++..++. T Consensus 471 ~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge-------~~~----~~~~~~~~~~~~~e 539 (651) T protein:vir:99 471 EQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGE-------TEA----VHEPPEENKIGERE 539 (651) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccccccccCCC-------Ccc----cccCccccccccch Confidence 9999999999999999999999999999999999988776655433211100 000 0000001111100 Q ss_pred ---cccccccccCC Q lcl|Aclame:pro 447 ---DEGETEDDDDA 457 (457) Q Consensus 447 ---~~~~~~~~~~~ 457 (457) -..+-+..+.- T Consensus 540 ~~~~~~~~~~~e~~ 553 (651) T protein:vir:99 540 WDTVKSELTTKDPI 553 (651) T ss_pred hhhhhhhhcccchh Confidence 00000000100 No 88 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=1.1e-65 Score=376.74 Aligned_cols=438 Identities=15% Similarity=0.094 Sum_probs=284.1 Q ss_pred Cchhhhhh--cc-----ccccccc-------------ccccccc-cccchhhh------------cccccccCccccCH- Q lcl|Aclame:pro 1 MGFWSALF--GR-----GHSPALD-------------AAEGRAW-EPYDPSIY------------NLGATASSGERVTP- 46 (457) Q Consensus 1 Mg~~~~l~--~~-----~~~~~~~-------------~~~~~~~-~~~~~~~~------------~~~~~~~~~~~v~~- 46 (457) -|||+|+. .| .+.++.. ...+... .-.++... ..++......+++. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d~~ 87 (648) T protein:vir:79 8 RGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFDFN 87 (648) T ss_pred chhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcCHH Confidence 68888752 22 1111000 0000000 00111111 01111111223333 Q ss_pred ---HHHhccHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEE Q lcl|Aclame:pro 47 ---HDALQVSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV 123 (457) Q Consensus 47 ---~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i 123 (457) +.+..+|.|++||++||+++|++||.++.+.+.. .+......++.+||+.++..+|++.++.+++++||+|+++ T Consensus 88 ~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~---~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYvei 164 (648) T protein:vir:79 88 EITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNA---VEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAK 164 (648) T ss_pred HHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCcc---chhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEE Confidence 2334699999999999999999999987765432 3344455667799999999999999999999999999999 Q ss_pred EecC-C---------------ceeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCcc Q lcl|Aclame:pro 124 RWAG-P---------------NIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLP 187 (457) Q Consensus 124 ~~~~-g---------------~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~ 187 (457) +|+. | .+.++||++|.+|++..+..+... .|.+... ++.....|+++||||++++.+. T Consensus 165 iRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~-----~Y~y~~~-g~~~~~~~~~~dIIHik~~~~~ 238 (648) T protein:vir:79 165 SRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIK-----GWQQEQE-GQDKPQKFKPEDIVHIYYKREK 238 (648) T ss_pred EecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCcee-----eeEEEec-CCceeEEecCccEEEEccCCCC Confidence 9875 3 247899999999999887655332 2333332 3445567999999999998888 Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCCHHHHHHHHHHHHHHhccccccCcceeccCcce Q lcl|Aclame:pro 188 GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARAREAWRAANSGVDNAHRVALLTEGAK 266 (457) Q Consensus 188 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~ 266 (457) +++||+||+.++..+|....++.+++.++|+||++|+++++++. ....++.++.++++.+.+.+. .+.+++++ T Consensus 239 d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~------~i~gg~v~ 312 (648) T protein:vir:79 239 GRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENM------DVEGGMVT 312 (648) T ss_pred CCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccc------cccccccc Confidence 99999999999999999999999999999999999999998753 334555666667776665432 23333333 Q ss_pred eeecc----CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc Q lcl|Aclame:pro 267 FSKVA----MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF 342 (457) Q Consensus 267 ~~~~~----~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll 342 (457) +..+. .+++|+||++++++++++||++|||||.+||...++++++ .++ ...++..++.|++..++..++..++ T Consensus 313 ~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~st--ae~-~~~~~~~~i~~l~~~i~~~le~~~~ 389 (648) T protein:vir:79 313 TERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRST--GDN-LSSDFKDRIKALQKVMATFINEFMV 389 (648) T ss_pred cceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33332 3678999999999999999999999999999876655544 333 3445677788887776665554332 Q ss_pred ----Cccc-----cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccc Q lcl|Aclame:pro 343 ----AETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGE 413 (457) Q Consensus 343 ----~~~~-----~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~ 413 (457) .... ....+++|+++.+++.|.+.+++.+.+++++||||+||+|+++||||++++++. .++..++.+... T Consensus 390 ~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~-~~l~~~~~~~~~ 468 (648) T protein:vir:79 390 KEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGR-AKMHLQMVTIAQ 468 (648) T ss_pred HHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc-cccccccccchh Confidence 2211 123468899999999999999999999999999999999999999999986543 334455544333 Q ss_pred ccccccccCCCccCC--CCCCCCCCCCcccCCCCcccccc--ccccCC Q lcl|Aclame:pro 414 EPEPEPAPAPPAIDP--PAEEPADDEEPDNAEGDPDEGET--EDDDDA 457 (457) Q Consensus 414 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 457 (457) ..........+.... .....+...+.++...+++.+.+ +-..++ T Consensus 469 ~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~~~~~ 516 (648) T protein:vir:79 469 ATALAALAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTSPKKQT 516 (648) T ss_pred ccccccCCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCCCcccc Confidence 222211111111000 01111111111111111111111 111111 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=1.5e-57 Score=332.18 Aligned_cols=276 Identities=16% Similarity=0.220 Sum_probs=240.7 Q ss_pred hccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEE Q lcl|Aclame:pro 66 IATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVH 144 (457) Q Consensus 66 ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~ 144 (457) ||++|++++++++.+ .++....|+.+||+.|++.+|++.++.+++++||||++++++ .|.+.+++|++|++|++. T Consensus 1 ia~l~~~~~~~~~~~----~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~ 76 (278) T protein:vir:78 1 MASLPLKMYEDYKVV----NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEML 76 (278) T ss_pred CccceeEEEecCccc----ccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEE Confidence 999999999765432 344445555799999999999999999999999999999987 588999999999999998 Q ss_pred EcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcc Q lcl|Aclame:pro 145 MVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPG 224 (457) Q Consensus 145 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~ 224 (457) .+..++.. .|.+ ....+....|+++||||++++++.++++|+||+.++..++....++.+++...+.+ .|+ T Consensus 77 ~~~~~~~~-----~y~~--~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 147 (278) T protein:vir:78 77 IENQSREL-----YYSI--HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDS 147 (278) T ss_pred EcCCCceE-----EEEE--EcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCc Confidence 87665422 2322 23344567899999999999988899999999999999999999999987666555 478 Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccc Q lcl|Aclame:pro 225 AVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDA 304 (457) Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~ 304 (457) +++..+..+++++.++++++|++.+. ++|+++++++|++|+++++++.|++++|.++++.++||++|||||.+||.. T Consensus 148 ~i~~~~~~l~~e~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~ 224 (278) T protein:vir:78 148 FMLKYGSNVGKEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR 224 (278) T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhc---cCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 99999999999999999999998764 578999999999999999999999999999999999999999999999987 Q ss_pred cccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-ccceEEEecchh Q lcl|Aclame:pro 305 TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEI 359 (457) Q Consensus 305 ~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~~f~~~~~ 359 (457) .++++ ++.+++.+.|++.||+|+++.|+++||++|+++.+. .+.+++||++.+ T Consensus 225 ~~~~~--sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 225 SNTNF--AKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred CCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 76654 557899999999999999999999999999998875 578999999999 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=3.9e-54 Score=313.41 Aligned_cols=345 Identities=14% Similarity=0.128 Sum_probs=250.8 Q ss_pred Cchhhhhhcccccc--cccccccccc-----cccchhhhccccccc--Ccccc-------CHHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSP--ALDAAEGRAW-----EPYDPSIYNLGATAS--SGERV-------TPHDALQVSAVFASVRLLSE 64 (457) Q Consensus 1 Mg~~~~l~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~v-------~~~~~~~~~~v~~~i~~ia~ 64 (457) |+=-++=..+...+ .......... .........++.+.. .+..+ ....+++.|+-+.|+..+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 55432111111000 0000000000 000001111121110 00000 00113334444555544443 Q ss_pred hhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEE Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHV 143 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~ 143 (457) +-+. .+......+.++.++.+||+.|+..+|++ ++.+++++||+|++++++. |++.+|+|++|..|++ T Consensus 81 ~~~~----------h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~ 149 (368) T protein:vir:79 81 AAAH----------HSSAVYVKRNILVSTFIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRR 149 (368) T ss_pred hccc----------cchhhhhhcchhhhhcCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCccccee Confidence 3331 12223345667788889999999999975 7889999999999999985 9999999999999986 Q ss_pred EEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 144 HMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 144 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) ..+.. . .| +. .+.+....|+++||||++.+++.+++||+||+.++..++.+..++..+..++|+||++| T Consensus 150 ~~~~~--~------~~-~~--~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~ 218 (368) T protein:vir:79 150 GLDLN--T------YF-FV--QNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHA 218 (368) T ss_pred eccCC--E------EE-EE--ecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 54421 1 11 11 12345568999999999999999999999999999999999999999999999999999 Q ss_pred ceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 224 GAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVP 297 (457) Q Consensus 224 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvp 297 (457) ++++.++ ..+++++.++++++|++ ..|.+|+++++++ ++|++|++++.+++|++|+|.+++++++||++|||| T Consensus 219 ~gil~~~~~~l~~e~~~~lk~~~~~-~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VP 297 (368) T protein:vir:79 219 GFILYMTDAAQKQEDVDTLREAMKS-AKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVP 297 (368) T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHH-hcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCC Confidence 9999876 57899999999999987 5788999999998 678999999999999999999999999999999999 Q ss_pred HHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhC Q lcl|Aclame:pro 298 PHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQN 377 (457) Q Consensus 298 p~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 377 (457) |.+||...+++.+++++|++.+.|++++|.|+++.|| ++|.+|.. .+++|+...+++.|.+.++....+ .+ T Consensus 298 p~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~------e~~rF~~~~l~~~D~~a~a~~~~r--sa 368 (368) T protein:vir:79 298 PQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGD------EVVRFAPYALGGHDQPAAAPGGQR--SA 368 (368) T ss_pred HHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCc------ceeeechhHhhcccccccCCcccc--cC Confidence 9999998887777888999999999999999999998 57776633 357899999999998887763211 11 No 91 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=1.9e-52 Score=304.13 Aligned_cols=323 Identities=14% Similarity=0.103 Sum_probs=233.3 Q ss_pred Cchhhhhhccccccccccccccccccc-ch--------hh-h-cc---cccccCccccCHHH----HhccHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPY-DP--------SI-Y-NL---GATASSGERVTPHD----ALQVSAVFASVRLL 62 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~-~~--------~~-~-~~---~~~~~~~~~v~~~~----~~~~~~v~~~i~~i 62 (457) |. ........... +.....++-. ++ .+ + .. +.......+++... ...++...+||... T Consensus 1 ~~--~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~k 76 (348) T protein:vir:26 1 MT--EQLIHSHTTDG--TESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKAR 76 (348) T ss_pred CC--ccccchhhccc--cCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhhh Confidence 32 11100000000 0000000000 00 00 0 00 00001112233321 11244444555444 Q ss_pred HHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEecccee Q lcl|Aclame:pro 63 SETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKI 141 (457) Q Consensus 63 a~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v 141 (457) .+.+++ .-.||+.++..+|++. +.+++++||+|++++|+. |++.+++|+++..| T Consensus 77 ~N~l~~------------------------~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v 131 (348) T protein:vir:26 77 ANYVAG------------------------RFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHM 131 (348) T ss_pred hhHHhh------------------------cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCcee Confidence 433332 2369999999999665 679999999999999985 99999999999999 Q ss_pred EEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 142 HVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGA 221 (457) Q Consensus 142 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~ 221 (457) ++..+.. .|.+. ..+....|+++||||++.+++.+++||+|++..+..++.+..++..+.+++|+||+ T Consensus 132 ~~~~d~~---------~~~~~---~~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa 199 (348) T protein:vir:26 132 RKRKNGD---------FVQLL---RNNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGA 199 (348) T ss_pred EeeecCc---------EEEEE---ecCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 8764421 11111 12345689999999999999999999999999999999999999999999999999 Q ss_pred CcceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 222 MPGAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFG 295 (457) Q Consensus 222 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fg 295 (457) +|++|+..+ ..++++++++++++|++. .|.+|+++++++ ++|+++++++.+++|++|++.+++++++||++|| T Consensus 200 ~pg~Il~~~~~~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~ 278 (348) T protein:vir:26 200 HMGFIFYATDPNLSEADEKALKEKIASS-KGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHR 278 (348) T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHh-cCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhC Confidence 999999765 479999999999999886 577889999998 7899999999999999999999999999999999 Q ss_pred CCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 296 VPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 296 vpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~ 368 (457) |||.++|....++.++++.+++.+.|++++|.|++..||++||++|..+. ..+++|+++.....+..... T Consensus 279 VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~---~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 279 FPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPEIPD---NLKLKFNLNPGVESANGSAV 348 (348) T ss_pred CCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCC---ccEEEEecCcccccchhhcC Confidence 99999998877777788899999999999999999999999999886432 34677887753322211111 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=3.3e-52 Score=302.80 Aligned_cols=321 Identities=15% Similarity=0.160 Sum_probs=241.6 Q ss_pred Cchhhhhhccccccccc--------ccccccccccchh-------hhccccc----ccCccccCHHH----HhccHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD--------AAEGRAWEPYDPS-------IYNLGAT----ASSGERVTPHD----ALQVSAVFA 57 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-------~~~~~~~----~~~~~~v~~~~----~~~~~~v~~ 57 (457) |+=-++- ++....+.. ......++-.++. ....... .+...+++... ...++...+ T Consensus 26 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s 104 (376) T protein:vir:10 26 MSKRRSR-APRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSS 104 (376) T ss_pred chhccCC-CcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhh Confidence 3322110 111000000 0000011100000 0000000 01112344422 223555566 Q ss_pred HHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEe Q lcl|Aclame:pro 58 SVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVL 136 (457) Q Consensus 58 ~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l 136 (457) ||.+.++.+++ .-+||+.++..+|++ ++.+++++||+|++++|+. |++.+|+|+ T Consensus 105 ~l~~k~n~l~~------------------------~~~Pnp~lT~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~pl 159 (376) T protein:vir:10 105 ALFFKANVLAS------------------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPA 159 (376) T ss_pred hHHHHhHHHHh------------------------ccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEe Confidence 66665554433 236999999999975 5679999999999999984 999999999 Q ss_pred ccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) +|.+|++..+.... .| . ...+....|+++||||++.+++.+++||+|++.++..++.+..++..|..++ T Consensus 160 ~~~~vr~~~d~~~~-------~~-~---~~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~ 228 (376) T protein:vir:10 160 LAKYVRRKADFNGF-------VY-V---NGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKY 228 (376) T ss_pred CCcceEEEeeCCeE-------EE-E---EcCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 99999887654321 11 1 1234456799999999999999999999999999999999999999999999 Q ss_pred HHccCCcceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 FRNGAMPGAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEI 290 (457) Q Consensus 217 ~~n~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~I 290 (457) |+||++|++|+..+ ..+++++.++++++|++ ..|.+|+++++++ ++|++|++++.+++|+||+|.++++.++| T Consensus 229 f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~-~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eI 307 (376) T protein:vir:10 229 YENGSHAGFILYMTDAAQKQDDVDNMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDL 307 (376) T ss_pred HhccCCCceEEEecCCCCCHHHHHHHHHHHHH-hcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHH Confidence 99999999999876 57899999999999987 5788999999998 57899999999999999999999999999 Q ss_pred HHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 291 ARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 291 a~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |++|||||.++|...+++.++++.|++.+.|+++||.|+++.||+ +|.+|.. .+++|+...+++.|.+. T Consensus 308 a~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~iee-ln~~L~~------~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 308 LAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGE------EVVRFDDYEIPPAPVAA 376 (376) T ss_pred HHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhccc------cccccChhHhhcccccC Confidence 999999999999988877788889999999999999999999985 7877733 24889999999999988 No 93 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=4.6e-52 Score=302.03 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=237.9 Q ss_pred Cchhhhhhcccccccc---cccccccccccchhhhccccccc-CccccC--HHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL---DAAEGRAWEPYDPSIYNLGATAS-SGERVT--PHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~--~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |+=.. ++...... .......++-.++.. .+.+... ....+- ....++-|..+..+..+.++.+...-.+ T Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i- 75 (346) T protein:vir:10 1 MKKQL---RKNLTQNDRLQPQAQTEIFSFGDPIP-VLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAI- 75 (346) T ss_pred CCccc---CCCCCcccccccccCeEEEecCCcce-ecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhh- Confidence 43221 11111000 000000111000000 0000000 000000 0001111111222222222222111111 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccc Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRR 153 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~ 153 (457) ....+.+..++.+||+.|+..+|++ ++.+++++||+|++++|+. |++.+++|++|..|++..+..+ +. T Consensus 76 --------~~k~n~l~~l~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-~~- 144 (346) T protein:vir:10 76 --------ITKANILLSTCEVDSRYLSRRDLSS-FVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQ-FY- 144 (346) T ss_pred --------hhhhhhHHHHHhCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCe-EE- Confidence 1234566777889999999999986 5688999999999999985 9999999999999987665432 11 Q ss_pred eeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-CC Q lcl|Aclame:pro 154 KVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-GT 232 (457) Q Consensus 154 ~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~ 232 (457) | .....++....|+++||||++.+++.+++||+|++..+..++.+..++.++..++|+||++|++++.++ .. T Consensus 145 -----~--~~~~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~ 217 (346) T protein:vir:10 145 -----Y--VPQRFDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDAS 217 (346) T ss_pred -----E--EEEccCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC Confidence 1 112234456789999999999999889999999999999999999999999999999999999999875 56 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceecc-----CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNS 307 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~ 307 (457) +++++.++++++|++.+ +.+|+++++++. .|+++++++.++.|++|++.+++++++||++|||||.+||...++ T Consensus 218 l~~e~~~~i~~~~~~~~-g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~ 296 (346) T protein:vir:10 218 QKQEDVENIRQQLKQSK-GVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNN 296 (346) T ss_pred CCHHHHHHHHHHHHHhc-CccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCC Confidence 89999999999998864 678999999985 478999999999999999999999999999999999999998887 Q ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 308 TSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 308 ~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) +.++++.|++.+.|++++|.|+++.||+ ++.+|.. .+++|+...+++.|. T Consensus 297 ~~~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L~~------e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 297 TGGFGNVADAAEVFFITEIEPLQERLKE-FNQWLGQ------EVIKFKPSKLLQRTQ 346 (346) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhccc------ceeeechhhhcccCC Confidence 7778889999999999999999999986 6666643 258899999999887 No 94 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=1.8e-51 Score=298.75 Aligned_cols=321 Identities=14% Similarity=0.149 Sum_probs=238.6 Q ss_pred Cchhhhhhccccccccc--------ccccccccccchh--h-----hccccc----ccCccccCHHHHh----ccHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD--------AAEGRAWEPYDPS--I-----YNLGAT----ASSGERVTPHDAL----QVSAVFA 57 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~--~-----~~~~~~----~~~~~~v~~~~~~----~~~~v~~ 57 (457) |+=-+.- ++....+.. +.....++-.++. + ...... .....+|+...+. .++...+ T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~ 79 (351) T protein:vir:79 1 MSKRRSR-APRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSS 79 (351) T ss_pred CCCCCCC-CCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhh Confidence 4322110 000000000 0000011100000 0 000000 0111234442211 2444445 Q ss_pred HHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEe Q lcl|Aclame:pro 58 SVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVL 136 (457) Q Consensus 58 ~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l 136 (457) ||...++.+++ .-+||+.++..+|+ +++.+++++||+|++++|+. |++.+|+|+ T Consensus 80 ~l~~k~n~l~~------------------------~~~Pnp~~t~~~f~-~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l 134 (351) T protein:vir:79 80 ALFFKANVLAS------------------------TFRPHRWLSRHAFE-RWALDFLTFGNGYLERRRNMVGGTLRLEPA 134 (351) T ss_pred hhhhhhhHHhh------------------------cccCCCCCCHHHHH-HHHHHHHhcCCeEEEEEECCCCCEEEEEEe Confidence 55443333322 24799999999996 56789999999999999985 999999999 Q ss_pred ccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) +|.+|++..+..+ |.+ ....+....|+++||||++.+++.+++||+|++..+..++.+..++..|..++ T Consensus 135 ~~~~v~~~~~~~~---------~~~--~~~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~ 203 (351) T protein:vir:79 135 LAKYVRRKADFSG---------FVY--VNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKY 203 (351) T ss_pred CCcceeeeecCCe---------EEE--EecCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 9999987655432 111 11334556899999999999999999999999999999999999999999999 Q ss_pred HHccCCcceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 FRNGAMPGAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEI 290 (457) Q Consensus 217 ~~n~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~I 290 (457) |+||++|++++..+ ..+++++.++++++|++ ..|.+|+++++++ ++|+++++++.+++|++|+|++++++++| T Consensus 204 f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~-~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI 282 (351) T protein:vir:79 204 YENGSHAGFILYMTDAAQKQDDVDNMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDL 282 (351) T ss_pred HhccCCCceEEEecCCCCCHHHHHHHHHHHHH-hcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHH Confidence 99999999999875 47899999999999986 5788899999988 57899999999999999999999999999 Q ss_pred HHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 291 ARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 291 a~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |++|||||.++|....++.++++.|++.+.|+++||.|+++.||+ +|.+|. ..+++|+...+++.|.+. T Consensus 283 ~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg------~~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 283 LAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLG------DEVVTFDDYEIPPAPVAA 351 (351) T ss_pred HHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcC------cceeeeChhhhccccccC Confidence 999999999999988878788889999999999999999999986 776652 235789999999999888 No 95 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=2.8e-51 Score=297.73 Aligned_cols=321 Identities=15% Similarity=0.158 Sum_probs=238.8 Q ss_pred Cchhhhhhccccccccc--------ccccccccccchh--h-----hccccc----ccCccccCHHHHh----ccHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD--------AAEGRAWEPYDPS--I-----YNLGAT----ASSGERVTPHDAL----QVSAVFA 57 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~--~-----~~~~~~----~~~~~~v~~~~~~----~~~~v~~ 57 (457) |+=-+.- ++....+.. +.....++-.++. + ...... .....+++...+. .++...+ T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~ 79 (351) T protein:vir:78 1 MSKRRSR-APRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSS 79 (351) T ss_pred CCCCCCC-CCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhh Confidence 4322110 000000000 0000011100000 0 000000 0111234443211 2444445 Q ss_pred HHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEe Q lcl|Aclame:pro 58 SVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVL 136 (457) Q Consensus 58 ~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l 136 (457) ||...++.+++ .-+||+.|+.++|+ +++.+++++||+|++++|+. |++.+++|+ T Consensus 80 ~l~~k~n~l~~------------------------~~~Pn~~~t~~~f~-~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl 134 (351) T protein:vir:78 80 ALFFKANVLAS------------------------TFRPHRWLSRHAFE-RWALDFLTFGNGYLERRRNMVGGTLRLEPA 134 (351) T ss_pred hhhhhhhHHhh------------------------cccCCCCCCHHHHH-HHHHHHHhcCCeEEEEEECCCCCEEEEEEe Confidence 55444433332 23699999999996 55679999999999999985 999999999 Q ss_pred ccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) ++..|++..+..+. .|. .+.+....|+++||||++.+++.+++||+|++..+..++.+..++..|..++ T Consensus 135 ~~~~v~~~~~~~~~-------~~~----~~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~ 203 (351) T protein:vir:78 135 LAKYVRRKADFSGF-------VYV----NGWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKY 203 (351) T ss_pred cCcceEEeeeCCeE-------EEE----ecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 99999887654321 111 1234556899999999999999999999999999999999999999999999 Q ss_pred HHccCCcceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 FRNGAMPGAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEI 290 (457) Q Consensus 217 ~~n~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~I 290 (457) |+||++|++|+..+ ..+++++.++++++|++ ..|.+|+++++++ ++|+++++++.+++|+||+|.+++++++| T Consensus 204 f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~-~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eI 282 (351) T protein:vir:78 204 YENGSHAGFILYMTDAAQKQDDVDNMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDL 282 (351) T ss_pred HhccCCCceEEEecCCCCCHHHHHHHHHHHHH-hcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHH Confidence 99999999999875 47899999999999986 5788999999988 57899999999999999999999999999 Q ss_pred HHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 291 ARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 291 a~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |++|||||.++|...+++.++++.|++.+.|++++|.|+++.||+ ++.+|.. .+++|+...+++.|.+. T Consensus 283 a~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~------~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 283 LAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGD------EVVRFDDYEIPPAPVAA 351 (351) T ss_pred HHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCc------cceecChhhhccccccC Confidence 999999999999988877778889999999999999999999996 6666532 25889999999999988 No 96 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=2.5e-51 Score=297.97 Aligned_cols=326 Identities=18% Similarity=0.199 Sum_probs=234.2 Q ss_pred Cchhhhhhccccccccccc-----ccccccccchhhhccccccc-Cc-cccCHHHHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAA-----EGRAWEPYDPSIYNLGATAS-SG-ERVTPHDALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) |+ +++..++.... ....++-.++.. ...+... .. .......+++.|.-+.++..+.++-+...-.+ T Consensus 1 m~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i 73 (340) T protein:vir:98 1 MS------KRKPRKAVAMTASAPQKMEAFTFGEPVP-VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) T ss_pred CC------CCCCCccccccccCccceeEEEcCCcee-ecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhh Confidence 54 22211111111 111111000000 0000000 00 00011112333333344333333333221111 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~ 152 (457) +.+. ......-+||+.++..+|. +++.+++++||+|++++|+. |++++++|+++..|++..+.. T Consensus 74 ~~k~----------n~l~~~~~Pn~~lt~~~f~-~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~---- 138 (340) T protein:vir:98 74 YVKR----------NVLASTYIPHPLLSRQDFS-RFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---- 138 (340) T ss_pred hhhh----------hHHhhccCCCCCCCHHHHH-HHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCc---- Confidence 1110 0111134899999999996 56689999999999999985 999999999999998754331 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-C Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-G 231 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~ 231 (457) ..|.+. ..+....|+++||||++.+++.+++||+|++..+..++.+..++..+..++|+||++|++|+.++ . T Consensus 139 ----~~~~~~---~~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~ 211 (340) T protein:vir:98 139 ----VFWFVE---NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDP 211 (340) T ss_pred ----EEEEEe---cCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCC Confidence 112222 23345679999999999999999999999999999999999999999999999999999999876 4 Q ss_pred CCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc Q lcl|Aclame:pro 232 TMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN 306 (457) Q Consensus 232 ~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~ 306 (457) .+++++.++++++|++. .|.+|+++++++ ++|+++++++.+++|+||++++++++++||++|||||.++|...+ T Consensus 212 ~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~ 290 (340) T protein:vir:98 212 AQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPE 290 (340) T ss_pred CCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCC Confidence 79999999999999874 788899999998 578999999999999999999999999999999999999999887 Q ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhcc Q lcl|Aclame:pro 307 STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGA 363 (457) Q Consensus 307 ~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d 363 (457) .+.++++.|++.+.|+++||.|++..||+ +|.+|..+ .++|+...+++.| T Consensus 291 ~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e------~~rF~~~~l~~~d 340 (340) T protein:vir:98 291 NIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhccccc------ccccCccccccCC Confidence 77778889999999999999999999995 88877543 2668888888888 No 97 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=1.7e-50 Score=293.39 Aligned_cols=333 Identities=14% Similarity=0.086 Sum_probs=237.6 Q ss_pred Cchhhhhhcccccc--cccccccccccccchhhhcccccccCcccc---CHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNLGATASSGERV---TPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |.-.. ++.... .........++-.++....+. ....+ .....++-|.-+.++-.+.++-+...-.++. T Consensus 1 ~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MKTNV---KTDNKKGIVIAPINDRTFSLNEISASPAL----DYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CCCCc---cccchhhcccCcceeEEeecCCcccccch----hhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceee Confidence 22211 111110 000011111111111110000 00000 0111223333333433333333333222322 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) + +......-+||+.++..+|++ ++.+++++||+|++++|+. |++.+++|+++..|++..+..... T Consensus 74 k----------~n~l~~~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~--- 139 (345) T protein:vir:37 74 R----------ANMVSSLYEGGKALSRMDMRA-LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSY--- 139 (345) T ss_pred e----------chHHHhhccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeE--- Confidence 1 122233458999999999975 5679999999999999985 999999999999998776543221 Q ss_pred eeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-CCC Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-GTM 233 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~ 233 (457) .+.+......+....|+++||||++.+++.+++||+|++..+..++.+..++..|+.++|+||++|++|+.++ ..+ T Consensus 140 ---~~~~~~~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l 216 (345) T protein:vir:37 140 ---LMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDL 216 (345) T ss_pred ---EEEEeEecCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCC Confidence 1112222334556789999999999999899999999999999999999999999999999999999999875 578 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ++++.++++++|++. .|.+|.++++++ ++|+++++++.+++|+||+|++++++++||++|||||.++|...+++ T Consensus 217 ~~e~~~~lk~~~~~~-~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~ 295 (345) T protein:vir:37 217 TEEMEEEIARKISES-KGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNT 295 (345) T ss_pred CHHHHHHHHHHHHHh-cCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCC Confidence 999999999999875 677888888887 57999999999999999999999999999999999999999988877 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhh Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKR 361 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~ 361 (457) .++++.|++.+.|++++|.|+++.||+++|+.+ .. ....+++|+...+.. T Consensus 296 ~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~--~~-~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 296 GGLGDPLKYREVYHYDEVMPLQEIIAETINQDP--EI-KNLLKIKFREQNFAK 345 (345) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cC-CCcceEEecchhhcC Confidence 788889999999999999999999999999743 22 234567888777765 No 98 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=1.7e-50 Score=293.39 Aligned_cols=320 Identities=13% Similarity=0.084 Sum_probs=234.1 Q ss_pred hhccccccccccccccc-----ccccchhh---hcccc------cccCccccCHHHHh----ccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 7 LFGRGHSPALDAAEGRA-----WEPYDPSI---YNLGA------TASSGERVTPHDAL----QVSAVFASVRLLSETIAT 68 (457) Q Consensus 7 l~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~------~~~~~~~v~~~~~~----~~~~v~~~i~~ia~~ia~ 68 (457) +.+..+++......... ++-.++.. ....+ ..+...+++...+. .++...+||...++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k~n~l-- 78 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANMV-- 78 (345) T ss_pred CCccccccchhhhcCCCceEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhhhhHH-- Confidence 22222222111111110 11001100 00000 01112233332211 2344444443333322 Q ss_pred CceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcC Q lcl|Aclame:pro 69 LPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVM 147 (457) Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~ 147 (457) ...-+||+.|+..+|++ ++.+++++||+|++++|+. |++++|+|++|..|++..+. T Consensus 79 ----------------------~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~ 135 (345) T protein:vir:37 79 ----------------------SATYEGGKALSKMEMRA-LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDG 135 (345) T ss_pred ----------------------hhccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecC Confidence 12337999999999964 5679999999999999985 99999999999999876543 Q ss_pred CCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 148 VDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVV 227 (457) Q Consensus 148 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~ 227 (457) ...+ . +........+....|+++||||++.+++.+++||+|++..+..++.+..++.+|+.++|+||++|++|+ T Consensus 136 ~~~~--~----~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il 209 (345) T protein:vir:37 136 GYSY--L----MKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFIL 209 (345) T ss_pred CeeE--E----EeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE Confidence 2211 1 111122233456789999999999999889999999999999999999999999999999999999999 Q ss_pred ecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh Q lcl|Aclame:pro 228 EVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI 301 (457) Q Consensus 228 ~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l 301 (457) ..+ ..+++++.++++++|++.++ .+|.+.++++ ++|+++++++.+++|+||++++++++++||++|||||.++ T Consensus 210 ~~t~~~l~~e~~~~lk~~~~~~~g-~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~li 288 (345) T protein:vir:37 210 YSTDPDLTEEMEEEIARKISESKG-VGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLS 288 (345) T ss_pred EeCCCCCCHHHHHHHHHHHHHhcC-ccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHh Confidence 765 57899999999999999864 4666666665 5679999999999999999999999999999999999999 Q ss_pred ccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhh Q lcl|Aclame:pro 302 SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKR 361 (457) Q Consensus 302 g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~ 361 (457) |...+++.++++.|++.+.|+++||.|++.+||+++|+.+ .. ....+++|+...+++ T Consensus 289 Gi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~--e~-~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 289 GIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDP--EI-KNLLKIKFREQNFAK 345 (345) T ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhh--cc-CCcceEEECchhhcC Confidence 9988877788889999999999999999999999999732 11 245689999999988 No 99 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=4e-50 Score=291.42 Aligned_cols=330 Identities=16% Similarity=0.161 Sum_probs=226.7 Q ss_pred hhhhhhccccccccccc----ccccccccchhhhccccccc-Cccc-cCHHHHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAA----EGRAWEPYDPSIYNLGATAS-SGER-VTPHDALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~-v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) |.++..++.......+. ....++-.++. +.+.+... .... .....+++-|.-+.++-.+.++-+...-.++.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~-~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k 79 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPV-PVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCce-eecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhh Confidence 22222111111100000 00001100000 00000000 0000 000011111122222222222222111111111 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) . ......-+||+.|+..+| +.++.+++++||+|++++|+. |++.+|+|+++..|++..+... T Consensus 80 ~----------n~l~~~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~------ 142 (344) T protein:vir:60 80 R----------NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV------ 142 (344) T ss_pred h----------hHHHhhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCe------ Confidence 1 112223489999999999 678899999999999999985 8999999999999987655431 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-CCCC Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-GTMS 234 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~ 234 (457) .|.+ ...+....|+++||||++.+++.+++||+||+..+..++.+..++..|..++|+||++|++++.++ ..++ T Consensus 143 --~~~v---~~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls 217 (344) T protein:vir:60 143 --YWWV---PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) T ss_pred --EEEE---ccCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCC Confidence 1211 133455689999999999999999999999999999999999999999999999999999999875 5699 Q ss_pred HHHHHHHHHHHHHHhccccccCcceec------cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALL------TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl------~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ++++++++++|++.++ . ++++.+++ .+|+++++++.+++|+||+|.+++++++||++|||||.++|...+.+ T Consensus 218 ~e~~~~ik~~~~~~~g-~-~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t 295 (344) T protein:vir:60 218 RNDIEMLRENMVKSKG-R-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV 295 (344) T ss_pred HHHHHHHHHHHHHhcC-C-CCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCC Confidence 9999999999988763 3 45777666 47899999999999999999999999999999999999999988877 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) .++++.|++.+.|++++|.|+++.|| +||.+|-. ..++|+.-.+...|. T Consensus 296 ~~~~n~e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~------~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 296 GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ------EVIRFKNYSLDTDNG 344 (344) T ss_pred CccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC------cccccCccccCCCCC Confidence 77888999999999999999999998 48887732 234566656655555 No 100 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=1e-49 Score=289.11 Aligned_cols=327 Identities=15% Similarity=0.156 Sum_probs=228.0 Q ss_pred Cchhhhhhccccccccccccccccccc--chhhhcccccccCccccCHHH------------HhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPY--DPSIYNLGATASSGERVTPHD------------ALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~------------~~~~~~v~~~i~~ia~~i 66 (457) |+=.++-.++................. ......++.+.. .++... ++.-|.-+..+-.+.+.- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~ 77 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMP---VLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSS 77 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCcee---ecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhh Confidence 443321111100000000000000000 000001111100 001111 111111112211111111 Q ss_pred ccC--ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEE Q lcl|Aclame:pro 67 ATL--PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHV 143 (457) Q Consensus 67 a~~--p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~ 143 (457) +.. ++.++ .......-+||+.++.++|++ ++.+++++||+|++++|+. |++.+++|++|..|++ T Consensus 78 ~~h~~~l~~k------------~n~l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~ 144 (350) T protein:vir:11 78 VYLQSGLKFK------------RNMLAKTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRR 144 (350) T ss_pred hhhccchhhh------------hhhhhhcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEe Confidence 111 11111 112222348999999999975 6789999999999999984 8999999999999987 Q ss_pred EEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 144 HMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 144 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) ..+... .|.+. ..+....|+++||||++.+++.+++||+||+.++..++.+..++..|..++|+||++| T Consensus 145 ~~~~~~--------~~~~~---~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~ 213 (350) T protein:vir:11 145 GTDLET--------FYQVR---SWKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHA 213 (350) T ss_pred eecCCe--------EEEEe---eCCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 654321 12222 2345568999999999999999999999999999999999999999999999999999 Q ss_pred ceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 224 GAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVP 297 (457) Q Consensus 224 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvp 297 (457) ++|+..+ ..+++++.+++++.|++. .|.+|+++++++ ++|+++++++.+++|+||+|.+++++++||++|||| T Consensus 214 ~gil~~~~~~ls~e~~~~l~~~~~~~-~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VP 292 (350) T protein:vir:11 214 GFILYMTDAAQNEEDIDALRTALKTA-KGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVY 292 (350) T ss_pred ceEEEecCCCCCHHHHHHHHHHHHHh-cCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCC Confidence 9999986 479999999999999875 677899999988 468999999999999999999999999999999999 Q ss_pred HHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchh Q lcl|Aclame:pro 298 PHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEI 359 (457) Q Consensus 298 p~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~ 359 (457) |.++|...+++.+++++|++.+.|++++|.|++..||+ +|.+|..+. ..+.+|++..| T Consensus 293 p~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~---~~F~~~~~~~l 350 (350) T protein:vir:11 293 PQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEV---VRFAQFDAPGL 350 (350) T ss_pred HHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccc---cccCcccccCC Confidence 99999988877778889999999999999999999995 787776532 22455777777 No 101 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=9.5e-50 Score=289.33 Aligned_cols=326 Identities=16% Similarity=0.194 Sum_probs=226.0 Q ss_pred Cchhhhhhccccccccc-ccccccccccchhhhccccccc--Ccc-ccCH------HHHhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD-AAEGRAWEPYDPSIYNLGATAS--SGE-RVTP------HDALQVSAVFASVRLLSETIATLP 70 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~------~~~~~~~~v~~~i~~ia~~ia~~p 70 (457) |+ +|..+.... ........+. .....++.+.. ++. -.+. ..+++=|.-+.++-.+.++-+... T Consensus 1 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~ 73 (344) T protein:vir:56 1 MS------KKKGKTPQPAAKTMTASAPK-MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHS 73 (344) T ss_pred CC------CCCCCCCchhhHHhhcCCCc-eEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhC Confidence 33 222211110 0000000000 00000111000 000 0000 011111222333333322222221 Q ss_pred eEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCC Q lcl|Aclame:pro 71 LSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVD 149 (457) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~ 149 (457) -.++.+. ......-+||+.++..+| ++++.+++++||+|++++|+. |++++|+|+++..|++..+... T Consensus 74 s~i~~k~----------n~l~~~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~ 142 (344) T protein:vir:56 74 SPIYVKR----------NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV 142 (344) T ss_pred ccceehh----------hhHHhhcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCE Confidence 1122111 112224589999999999 678899999999999999985 9999999999999987654421 Q ss_pred cccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEec Q lcl|Aclame:pro 150 GLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEV 229 (457) Q Consensus 150 ~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~ 229 (457) .|.+ ...+....|+++||||++.+++.+++||+|++..+..++.+..++..+..++|+||++|++|+.+ T Consensus 143 --------~~~~---~~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~ 211 (344) T protein:vir:56 143 --------YWWV---PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYV 211 (344) T ss_pred --------EEEE---ecCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEe Confidence 1211 12345568999999999999999999999999999999999999999999999999999999987 Q ss_pred C-CCCCHHHHHHHHHHHHHHhccccccCcceec------cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhc Q lcl|Aclame:pro 230 P-GTMSEEGLARAREAWRAANSGVDNAHRVALL------TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLIS 302 (457) Q Consensus 230 ~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl------~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg 302 (457) + ..+++++.++++++|++..+ .+++++++| ++|+++++++.+++|+||+|++++++++||++|||||.++| T Consensus 212 ~d~~ls~e~~~~lk~~~~~~~g--~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llG 289 (344) T protein:vir:56 212 TDAVQDRNDIEMLRENMVKSKG--RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) T ss_pred cCCCCCHHHHHHHHHHHHHhcC--CCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhc Confidence 6 46999999999999998653 356888887 47999999999999999999999999999999999999999 Q ss_pred cccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 303 DATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 303 ~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) ....++.++++.|++.+.|++++|.|+++.||+ +|.+|..+. ++|+.-.+...|- T Consensus 290 i~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~~------~~F~~y~l~~~~~ 344 (344) T protein:vir:56 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEV------IRFKNYSLDTDNG 344 (344) T ss_pred cCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccc------ccCCCccccccCC Confidence 988877778889999999999999999999995 777775432 3343333333333 No 102 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=2.7e-50 Score=292.31 Aligned_cols=322 Identities=14% Similarity=0.092 Sum_probs=231.8 Q ss_pred hhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc---cCceEEEEeccCceee Q lcl|Aclame:pro 7 LFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA---TLPLSTYSKRGGTRKE 83 (457) Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia---~~p~~~~~~~~~~~~~ 83 (457) +-++..++........ .....++.+ +-.+....+..|+.+.....+ .-|+....-.+--+. T Consensus 1 m~~~~~~~~~~~~~~~------~~~~~~~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~- 64 (337) T protein:vir:78 1 MTKRQQQPAQAAASSP------RPSVVFSMP---------EAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARA- 64 (337) T ss_pred CCCcccCcccccccCc------eeEEEecCc---------ccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHhhc- Confidence 2233333221111110 001112211 112223334444444433222 223322100000000 Q ss_pred ecCcchhhhccCCCCCCCH----HHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 84 IDTPEWLDFPNAEPGGMGR----IDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 84 ~~~~~~~~l~~~pn~~~~~----~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) -.+| ...+..+||..++. .+++++++.|++++||+|++++|+ .|++++|+|++|..|++..+. .. . T Consensus 65 ~~~h-~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~--~~------~ 135 (337) T protein:vir:78 65 NAHH-GAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDG--CF------V 135 (337) T ss_pred chhh-hhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCC--eE------E Confidence 0111 12344578876654 478999999999999999999998 499999999999999765432 11 1 Q ss_pred EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCCHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEG 237 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~e~ 237 (457) |.. ..+....|+++||||++.+++.+++||+|++..+..++.+..++.++..++|+||++|++|+..++ .+++++ T Consensus 136 ~~~----~~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~ 211 (337) T protein:vir:78 136 YLQ----QGKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDT 211 (337) T ss_pred EEE----cCCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHH Confidence 211 123456799999999999998899999999999999999999999999999999999999998764 689999 Q ss_pred HHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccc-ccc Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST-SWG 311 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~-~~~ 311 (457) .+++++.|++ ..|.+|.++++++ ++|+++++++.+++|+||+|++++++++||++|||||.++|...+++ .++ T Consensus 212 ~~~lk~~~~~-~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~ 290 (337) T protein:vir:78 212 EEEMKEMIAN-SKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGL 290 (337) T ss_pred HHHHHHHHHH-hcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCcc Confidence 9999999986 5677889998887 67899999999999999999999999999999999999999876653 455 Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhh Q lcl|Aclame:pro 312 SGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIK 360 (457) Q Consensus 312 ~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~ 360 (457) ++.|++.+.|+++||.|++++||++++.+|++.... ..++++...++ T Consensus 291 ~n~e~~~~~f~~~~L~P~~~~ie~~~n~~ll~~~~~--~~f~~~~~~~~ 337 (337) T protein:vir:78 291 GDPEKYDATYARNEVLPLCELVQDAINSAGLPRALW--VTFRETIGAAV 337 (337) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhc--eeccccccccC Confidence 778999999999999999999999999998875432 23445555666 No 103 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=2.7e-49 Score=286.83 Aligned_cols=324 Identities=16% Similarity=0.200 Sum_probs=226.7 Q ss_pred Cchhhhhhccccccccccccc-ccccccchhhhccccccc--Ccc----c---cCHHHHhccHHHHHHHHHHHHhhccC- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEG-RAWEPYDPSIYNLGATAS--SGE----R---VTPHDALQVSAVFASVRLLSETIATL- 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~----~---v~~~~~~~~~~v~~~i~~ia~~ia~~- 69 (457) |+ +|+.+++...... ....+. .....++.+.. ++. . .....+++=|.-+.++-.+.++-+.. T Consensus 1 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~ 73 (344) T protein:vir:20 1 MS------KKKGKTPQPAAKTMTASGPK-MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHS 73 (344) T ss_pred CC------cccCCCCcchhhhhhccCCc-eEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhC Confidence 33 2222211100000 000000 00001111000 000 0 00011111122222322222222222 Q ss_pred -ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcC Q lcl|Aclame:pro 70 -PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVM 147 (457) Q Consensus 70 -p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~ 147 (457) ++++++ ......-+||+.|+..+| ++++.+++++||+|++++|+. |++++|+|+++..|++..+. T Consensus 74 ~~i~~k~------------n~l~~~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~ 140 (344) T protein:vir:20 74 SPIYVKR------------NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE 140 (344) T ss_pred ccceehh------------hhHHHhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecC Confidence 222211 112223489999999999 678899999999999999985 99999999999999876543 Q ss_pred CCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 148 VDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVV 227 (457) Q Consensus 148 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~ 227 (457) .. .|.+ ...+....|+++||||++.+++.+++||+|++..+..++.+..++..+..++|+||++|++|+ T Consensus 141 ~~--------~~~~---~~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il 209 (344) T protein:vir:20 141 DV--------YWWV---PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIM 209 (344) T ss_pred CE--------EEEE---ccCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 21 1111 133455789999999999999889999999999999999999999999999999999999999 Q ss_pred ecC-CCCCHHHHHHHHHHHHHHhccccccCcceec------cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHH Q lcl|Aclame:pro 228 EVP-GTMSEEGLARAREAWRAANSGVDNAHRVALL------TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHL 300 (457) Q Consensus 228 ~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl------~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 300 (457) .++ ..+++++.++++++|++.++ . ++++.+++ .+|+++++++.+++|+||+|++++++++||++|||||.+ T Consensus 210 ~~~d~~l~~e~~~~ik~~~~~~~g-~-~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~l 287 (344) T protein:vir:20 210 YVTDAVQDRNDIEMLRENMVKSKG-R-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) T ss_pred EecCcCCCHHHHHHHHHHHHHhcC-C-CCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHH Confidence 875 57999999999999988653 3 45777776 469999999999999999999999999999999999999 Q ss_pred hccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 301 ISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 301 lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) +|...+.+.++++.|++.+.|++++|.|+++.|| ++|.+|..+ .++|+...+...|. T Consensus 288 lGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~e-~in~~lg~~------~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 288 MGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQE------VIRFKNYSLDTDND 344 (344) T ss_pred hccCCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCc------ccccCccccccCCC Confidence 9998877777888999999999999999999998 477776432 35566666655555 No 104 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=5.4e-48 Score=279.73 Aligned_cols=249 Identities=13% Similarity=0.123 Sum_probs=194.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ||||.+.++|....... ........+. ......+..|+.+.|+++++|++||++||+++|++|++++++.+ T Consensus 1 MglF~~~~~r~~~~~~~-----~~~~~~~~~~--~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~-- 71 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNED-----DLQMMVQTLP--SFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ-- 71 (251) T ss_pred CCccccccccccCCCcc-----chhhhhhhhc--cccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCcc-- Confidence 99997665543222110 0111111111 11223456688999999999999999999999999999987443 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ....++....++.+||+.+++++|++.++.+++++||+|+++.|+. |++.+|+|++|++|++..+.++... ..| T Consensus 72 -~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~----~~~ 146 (251) T protein:vir:46 72 -INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLY----YFH 146 (251) T ss_pred -ccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEE----EEE Confidence 2233444445557999999999999999999999999999999884 8999999999999999987665432 222 Q ss_pred EEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGL 238 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~ 238 (457) ........+....|+++||||+++++ .++++|+||+.++..+|....++++++.++|+||++|+|+++++..+ ++++. T Consensus 147 ~~~~~~~~g~~~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~ 225 (251) T protein:vir:46 147 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 225 (251) T ss_pred EEeccCCcceeEEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHH Confidence 22333345566889999999999876 57899999999999999999999999999999999999999999887 46678 Q ss_pred HHHHHHHHHHhccccccCcceeccCccee Q lcl|Aclame:pro 239 ARAREAWRAANSGVDNAHRVALLTEGAKF 267 (457) Q Consensus 239 ~~~~~~~~~~~~~~~n~~~~~vl~~g~~~ 267 (457) ++++++|++.++|.+|+|++++. |+= T Consensus 226 ~~~~~~~~~~~~g~~n~g~~~~g---m~~ 251 (251) T protein:vir:46 226 DRAREEFPKVLVELNKLGKLSYS---MNQ 251 (251) T ss_pred HHHHHHHHHHhcCcccccccccc---cCC Confidence 99999999999999999997763 332 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1.9e-43 Score=254.84 Aligned_cols=213 Identities=18% Similarity=0.145 Sum_probs=174.3 Q ss_pred eEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 141 IHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNG 220 (457) Q Consensus 141 v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~ 220 (457) |+ ...++. +++.|........+....|+++||||+|.+++.+++||+||+..+..+|....++.+|+.++|+|| T Consensus 1 ~r---~~~dg~---~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng 74 (219) T protein:vir:98 1 MR---VCKDGN---YKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNG 74 (219) T ss_pred Cc---eeecCe---EEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 21 222221 122222223334456678999999999999999999999999999999999999999999999999 Q ss_pred CCcceEEecCC-CCCHHHHHHHHHHHHHHhccccccCcceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 221 AMPGAVVEVPG-TMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIF 294 (457) Q Consensus 221 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~f 294 (457) ++|+||+.++. .++++++++++++|++. .+..|+++++++ ++|++|++++++++|+||+|++++++.+||++| T Consensus 75 ~~p~gil~~~~~~l~~e~~~~~~~~~~~~-~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~f 153 (219) T protein:vir:98 75 AHMGFILYSTDPDMTEEMEDEIAERIRDS-KGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSH 153 (219) T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHHh-cCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHh Confidence 99999998764 79999999999999875 567777777776 568999999999999999999999999999999 Q ss_pred CCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhcc Q lcl|Aclame:pro 295 GVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGA 363 (457) Q Consensus 295 gvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d 363 (457) ||||.+||....++.+++++|++.+.|+++||.|++++||++||.+++.+.+ .+++|+.....-.+ T Consensus 154 gVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~---~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 154 RFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSA---LKVNFKQPEKRDKN 219 (219) T ss_pred CCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCc---cEEeecCcccccCC Confidence 9999999988877778888999999999999999999999999988654433 24566544433333 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.93 E-value=3.1e-26 Score=160.43 Aligned_cols=396 Identities=13% Similarity=0.059 Sum_probs=223.7 Q ss_pred Cchhhhhhcccccccccccccccccccchhhhcccc-cccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGA-TASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |.+.+.+..-.. ..+..+. .....++. .......+ ...+.+++.++++|+.+|+.+.+.++.+.....+ T Consensus 1 ~~~~D~~~~~~~----~~g~~~~-----~~~~~~~~~~~~~~~~l-~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~ 70 (437) T protein:vir:52 1 MKFFDGIKSLAL----KLGSKQE-----QTYYSPSLSLTDDLVQL-EALWRDNWIANKVCIKRPEDMVRNWREIYSNDLN 70 (437) T ss_pred CchhhhhHhHHh----cCCCccc-----cceeecCccccccHHHH-HHHHHhCchhhHHhhcchHHhhcCCceEecCCCC Confidence 888876643211 0111111 01110110 01111111 1234578999999999999999999988642211 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----------CceeEEEEeccceeEEEEcCCC Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG----------PNIAGLDVLDPTKIHVHMVMVD 149 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~----------g~~~~~~~l~p~~v~~~~~~~~ 149 (457) . .....+...+.+-+ ..+-+...+.+.-++|.+++++..++ +.+..+.++++.++++...... T Consensus 71 ~---~~~~~~~~~~~~l~----~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~ 143 (437) T protein:vir:52 71 S---KQLDLFTKFERSLK----LRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDD 143 (437) T ss_pred H---HHHHHHHHHHHhhc----HHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccc Confidence 1 11112223333322 34555556666778999999988764 5788889999988874332222 Q ss_pred cccc---eeeEEEEEeeecccceeEEeccceEEEecc---CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 150 GLRR---KVFEAYDIDADGNEVLLGWFTPRDVLHIPG---MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 150 ~~~~---~~~~~y~~~~~~~~~~~~~~~~~evih~~~---~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) .... .-...|.+. +......+-++.|||+.. +.+.+.++|.|.++.+...|.....+.......+.+...+ T Consensus 144 dp~s~~fg~p~~y~v~---~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~ 220 (437) T protein:vir:52 144 DVLSPNFGRYSEYSIL---GGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID 220 (437) T ss_pred cccccccCcceEEEEe---cCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 1111 111223332 222335688899999964 3345678999999999999999999999999888776555 Q ss_pred ceEEecCC---CCC---HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 224 GAVVEVPG---TMS---EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVP 297 (457) Q Consensus 224 ~~~~~~~~---~~~---~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvp 297 (457) . ++++. .++ ++...+..+.+. ...+.+++++++.+.+|+.++.+.++. .+...+...+||++++|| T Consensus 221 v--~k~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~e~~~~~~sgl--~~~l~~~~~~iaaa~~iP 292 (437) T protein:vir:52 221 I--FKIAGLSDKIAAGMENEVASVISAVQ----EIKSATNSLLLDAENEYDRKELTFTGL--KDLLTEFRNAVAGAADMP 292 (437) T ss_pred c--eecchHHHHhcCCcHHHHHHHHHHHH----HhcCCCceEEEcCCcceEEEecCcCCH--HHHHHHHHHHHHHHhcCc Confidence 3 33332 122 222233333222 224457889999999999998877664 467788889999999999 Q ss_pred HHHhccccccccccchHHHHHHHHHH-------HHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH---- Q lcl|Aclame:pro 298 PHLISDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE---- 366 (457) Q Consensus 298 p~~lg~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~---- 366 (457) ..+|.....++.++ .++..+.|+. .-+.|+++.+-..|-+..+..... .+.|.++++...+.++ T Consensus 293 ~t~L~G~s~~Glas--ge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~---~~~~~f~pL~~~s~kekae~ 367 (437) T protein:vir:52 293 VTILFGQSVSGLAS--GDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPA---DWWFEFVPLTTVKQEQQINM 367 (437) T ss_pred hhhhcCcCcccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---cceEEeCCcCCcCHHHHHHH Confidence 98885555555532 3455566665 456776766666665544433221 3566677777777554 Q ss_pred ---HHHHHHHHHhCCCcCHHHHHHHhCC----CCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc Q lcl|Aclame:pro 367 ---RMELWSLGLQNGIYSIDEVRAAEDM----TPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP 439 (457) Q Consensus 367 ---~~~~~~~~~~~g~~T~nE~R~~~G~----~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (457) .++++.+++++|+++++|+|+++.- +.+++ .| +.. .... ++..++ .+ +.+ T Consensus 368 ~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~--~~----------~~~------~~~~---~~~~~~-~~-~~~ 424 (437) T protein:vir:52 368 LNTFATAANTLIQNGVLNEYQIANELRESGLFANISA--EH----------IEE------LKNA---DEFAGN-FE-EPE 424 (437) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCc--cc----------ccc------ccCC---CCCCCc-cC-CCC Confidence 4455778899999999999998742 22221 00 000 0000 000000 00 000 Q ss_pred ccCCCCccccccc Q lcl|Aclame:pro 440 DNAEGDPDEGETE 452 (457) Q Consensus 440 ~~~~~~~~~~~~~ 452 (457) ...+.++.+++.+ T Consensus 425 ~~~~~~~~~~~~~ 437 (437) T protein:vir:52 425 KMEGAQVQNSEDQ 437 (437) T ss_pred CCCCCCCCCCCCC Confidence 0011111111111 No 107 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.90 E-value=6.3e-24 Score=147.78 Aligned_cols=434 Identities=11% Similarity=0.032 Sum_probs=225.7 Q ss_pred Cchhhhhhccccc------------------cccccccccccc-------ccchhh-hccc-ccccCccccCHHHHhccH Q lcl|Aclame:pro 1 MGFWSALFGRGHS------------------PALDAAEGRAWE-------PYDPSI-YNLG-ATASSGERVTPHDALQVS 53 (457) Q Consensus 1 Mg~~~~l~~~~~~------------------~~~~~~~~~~~~-------~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~ 53 (457) .+--.|...|.+. +.........+. ..+... ..++ .....+..+ ...+.+++ T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~ 95 (532) T protein:vir:94 17 LQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPT-LALLAQLP 95 (532) T ss_pred hhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHH-HHHHHcCc Confidence 1111111111100 000000000000 000000 0000 000111111 12345789 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec------- Q lcl|Aclame:pro 54 AVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA------- 126 (457) Q Consensus 54 ~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~------- 126 (457) .++.+|+.+|+.+-+-.+.+....+..........+...+.+- ...+-+..++.+..++|.+++++... T Consensus 96 l~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l----~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~ 171 (532) T protein:vir:94 96 EYRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQY----NVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVP 171 (532) T ss_pred hhhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhh----hHHHHHHHHHHhhhcccceEEEEEeccCCcccc Confidence 9999999999999999998865443322111111222222222 23445555666677889888876432 Q ss_pred -------------CCceeEEEEeccceeEEEEcCCCcccc--eee-EEEEEeeecccceeEEeccceEEEeccCCcc--- Q lcl|Aclame:pro 127 -------------GPNIAGLDVLDPTKIHVHMVMVDGLRR--KVF-EAYDIDADGNEVLLGWFTPRDVLHIPGMMLP--- 187 (457) Q Consensus 127 -------------~g~~~~~~~l~p~~v~~~~~~~~~~~~--~~~-~~y~~~~~~~~~~~~~~~~~evih~~~~~~~--- 187 (457) .|.+..+.++.|..|++.......... +.. ..|.. . ....+-++.|||+...... T Consensus 172 ~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v--~----~g~~iH~SRli~f~g~~~p~~~ 245 (532) T protein:vir:94 172 ADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIA--T----SGKKIHSSRIHTVVGRPVGDML 245 (532) T ss_pred ccccccccccccccceeeEEEeechheecccccccccccccccCCceeEEE--c----cCeeeccceEEEecCCCchhhh Confidence 123456778888887654332211111 111 11111 1 1135778999999754332 Q ss_pred ---CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccC- Q lcl|Aclame:pro 188 ---GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTE- 263 (457) Q Consensus 188 ---~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~- 263 (457) ..++|.|.++.+...|.....+......+..........+.....++.+..+++.+++......-+| .++++++. T Consensus 246 ~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n-~g~~~id~~ 324 (532) T protein:vir:94 246 KAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLATDMAQLLAPGGAQSLDARLQLFNLYRDN-RNIGALDKG 324 (532) T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcchhHHHHHHHHHHHHhhcCC-ccceEEcCC Confidence 3457999999999999999999888888777655554333322344555556666666544433333 45566654 Q ss_pred cceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHH-------HHHhhHHHHHHH Q lcl|Aclame:pro 264 GAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERIEA 335 (457) Q Consensus 264 g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~ 335 (457) ..+|+.++.+.++. .+.......+||.+.+||..+| |.. .+..+ ++.+.....|+. ..+.|++..+-+ T Consensus 325 ~e~~e~~~~~lsgl--~~~l~~~~~~iAaa~~IP~t~LfG~s-p~Gln-stGe~D~~~yyd~I~s~Qe~~l~p~le~l~~ 400 (532) T protein:vir:94 325 TEEIQQTNTPLSGL--DSLQAQSQEQMAAVSHIPLVKLLGIT-PNGLN-ASSDGEIRVWYDFIAGYQATNLTPLMEWIID 400 (532) T ss_pred CceeEEEecccCCH--HHHHHHHHHHHHhHhCCCeeeeecCC-ccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 57888888776664 4677888899999999999976 543 33332 222334444543 447788888877 Q ss_pred HHHhhhcCccccccceEEEecchhhhccHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccc Q lcl|Aclame:pro 336 GFNRLLFAETADRFRFVKFNLDEIKRGAPKERM-------ELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNL 408 (457) Q Consensus 336 ~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~-------~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~ 408 (457) .|.+..+..... .+.|.+++|...+.++++ +++++++++|++++||+|++++..|..+..++.. .- T Consensus 401 ~l~~s~~g~~~~---d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~--~~-- 473 (532) T protein:vir:94 401 LIQLSEYGQIDP---GLAWEWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALG--ER-- 473 (532) T ss_pred HHHHHhcCCCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccc--cc-- Confidence 776655443322 255666777777766654 4567789999999999999999988765322211 10 Q ss_pred cccccccccccccCCCccCCC-CCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 409 GEIGEEPEPEPAPAPPAIDPP-AEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ..++..............++. ..+.++.+.++..++..+.....++|.+ T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 523 (532) T protein:vir:94 474 DELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSEDDQTDNQPDAQADPA 523 (532) T ss_pred cccccccchhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCcccc Confidence 111111111111111111111 1111111222222222222233444444 No 108 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.90 E-value=6.4e-24 Score=147.73 Aligned_cols=422 Identities=11% Similarity=0.050 Sum_probs=218.5 Q ss_pred Cchhhhhhcccccccccccccccccccchhhhcccc-------------cccCccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGA-------------TASSGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) +.+..+.-+ ..+.+.. .+ .......+....+ ....+..+ ...+.+++.++.+|+.+|+.+. T Consensus 55 ~~~~~~~~~--~~~~~a~-d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~l~r~iVd~~A~d~~ 128 (537) T protein:vir:10 55 IAMMPKVDG--SHPDMAM-DG--LDVEGGTFSAYANPNLSEGLVLWYAQQAFIGHQM-CALIATHWLVNKACSQMPRDAM 128 (537) T ss_pred Ccccccccc--cccchhc-cc--cccchhhhhhhccccccchhhhhccccCCccHHH-HHHHHhCchhhhhhhhhhHHhh Confidence 222211000 0000000 00 0000000000000 00111111 1234578999999999999999 Q ss_pred cCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe---cC--------------Cce Q lcl|Aclame:pro 68 TLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW---AG--------------PNI 130 (457) Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~---~~--------------g~~ 130 (457) +-++++....++.........+...+.+- ...+-+...+.+..++|.+++++.- ++ |.+ T Consensus 129 r~~~~i~~~~~~~~~~~~~~~l~~~~~~l----~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~ 204 (537) T protein:vir:10 129 RKGYKIISDDGNELDPKDAKFIDRYDRAF----NIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAY 204 (537) T ss_pred cCCceeecCCcccccHHHHHHHHHHHHHh----hHHHHHHHHHHhcccccceEEEEeecCcCCcccccccccccccccce Confidence 99998865443222111111222222222 2233444455555667988887642 11 234 Q ss_pred eEEEEeccceeEEEEcCC------CcccceeeEEEEEeeecccceeEEeccceEEEeccCCc------cCCccccchhHH Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMV------DGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMML------PGDFVGCSPISY 198 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~------~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~------~~~~~G~s~~~~ 198 (457) ..+.++.|..+.+..... ....+. ...|.+ ....+-++.|||+..... ...++|.|.++. T Consensus 205 k~l~vidp~~~~~~~~~~~~~dp~sp~fg~-P~~y~v-------~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~ 276 (537) T protein:vir:10 205 KGIVQIDPYWCAPLLDAQASSNPVSMHFYE-PTYWLI-------NGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQ 276 (537) T ss_pred eEEEEechhhcccccchhhhccCCccccCC-ceeeee-------cCeEecceeEEEecCCCCchhhhcccCcccccHHHH Confidence 567777777776533211 111111 112222 124677899999865432 245679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC-CHHHHHHHHHHHHHHhccccccCcceeccC-cceeeeccCChhH Q lcl|Aclame:pro 199 ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGLARAREAWRAANSGVDNAHRVALLTE-GAKFSKVAMSPDE 276 (457) Q Consensus 199 ~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~-g~~~~~~~~s~~d 276 (457) +...|.....+.......+.........+.....+ ++++..+..+.+. ...+| .++++++. +.+|+.++.+..+ T Consensus 277 ~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~---~~r~n-~g~~~id~e~e~~e~~~~~lsg 352 (537) T protein:vir:10 277 IMERVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWT---ATRDN-YQVRVVDKDNEDVVQIDTTLND 352 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHH---hhcCC-cceeEecCCCceeEEEeccCCC Confidence 99999999999888888888877665444332332 3444433333333 33333 44556654 6888888877666 Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHH------HHHhhHHHHHHHHHHhhhcCcccccc Q lcl|Aclame:pro 277 AQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTM------FSLRPWLERIEAGFNRLLFAETADRF 349 (457) Q Consensus 277 ~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~------~~l~P~~~~ie~~l~~~ll~~~~~~~ 349 (457) + .+.+....+.||.+.|||..+| |....+..+ +.+...+.|+. ..|.|.+..+.+.+.+..+.. . T Consensus 353 l--~~~l~~~~~~iAa~~~IP~t~L~G~sp~Glna--tGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~----~ 424 (537) T protein:vir:10 353 L--DKVIMNQYQLVCAIARTPAPKMLGTVPTGFNS--TGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK----R 424 (537) T ss_pred H--HHHHHHHHHHHHhhhCCCceeeccCCcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C Confidence 4 4677888899999999999966 543333322 22334444442 347888888887777665543 2 Q ss_pred ceEEEecchhhhccHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccC Q lcl|Aclame:pro 350 RFVKFNLDEIKRGAPKERME-------LWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA 422 (457) Q Consensus 350 ~~~~f~~~~~~~~d~~~~~~-------~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~ 422 (457) ..|.|.+++|...+.+++++ ++++++++|++++||+|++++..|..+. +.+....+....+........+ T Consensus 425 ~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~--~~l~~~~~~ed~e~~~~~~~~~- 501 (537) T protein:vir:10 425 IRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGF--TSITPAMRPTDAEDIDVDDEGK- 501 (537) T ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCcccc--ccccCCCChhhhhcccCCccCC- Confidence 24777888988888877665 4888999999999999999998775431 1121111111111111000000 Q ss_pred CCccCCCCCCCC---CCCCcccCCCCcccccccccc Q lcl|Aclame:pro 423 PPAIDPPAEEPA---DDEEPDNAEGDPDEGETEDDD 455 (457) Q Consensus 423 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 455 (457) +....+....++ ..........++.....+.+| T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 537 (537) T protein:vir:10 502 PVRIIEDQPAPSEMFGATSSGESANDPRDSGAAFED 537 (537) T ss_pred cCCCCCCCCCccccCCCCccccccCCCccCccccCC Confidence 000011111111 111111111222222222223 No 109 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.85 E-value=1.4e-20 Score=129.39 Aligned_cols=426 Identities=13% Similarity=0.017 Sum_probs=235.8 Q ss_pred hhhhhhcccccccccccccccc--cccchhhhcc-cc-ccc--CccccCHHHHh-ccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAEGRAW--EPYDPSIYNL-GA-TAS--SGERVTPHDAL-QVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~~--~~~~v~~~~~~-~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |-++. ....++...+..... .+....+... .+ ..+ .+..+ ++..+ +.+.|.+|++.+...|.+++|+|.. T Consensus 1 ~~~~~--~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~l-y~~m~e~D~~i~s~l~~rk~av~~~~w~v~p 77 (469) T protein:vir:10 1 MTERV--KTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAV-YSRMDNEDSRVTSLLEAISLPIRSTPWRIRA 77 (469) T ss_pred CCCcc--cCCCCccchhhhhhcccccchhhccccccccccccccchHH-HHHHHhhChHHHHHHHHHHHHHhcCCceEec Confidence 11111 111111111111100 1100000000 00 000 11112 23443 5899999999999999999999976 Q ss_pred eccCceeeecCcchhhhccCC-------------CCCCCHHHHHHHHHHHHHHcCCeEEEEEecC------C--ceeEEE Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAE-------------PGGMGRIDILSQTVLSLLLQGNAFLAVRWAG------P--NIAGLD 134 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~p-------------n~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~------g--~~~~~~ 134 (457) ..++... .......+..+ .-..++.+++..++.+.+.+|.++.+++... | .+..+. T Consensus 78 ~~~~~e~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~ 154 (469) T protein:vir:10 78 NGASDEV---TEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLA 154 (469) T ss_pred CCCCHHH---HHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeee Confidence 4332211 11111111111 1234677888888888888999999998641 2 244455 Q ss_pred EeccceeE-EEEcCCCcccceeeEE----EEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 135 VLDPTKIH-VHMVMVDGLRRKVFEA----YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAA 209 (457) Q Consensus 135 ~l~p~~v~-~~~~~~~~~~~~~~~~----y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~ 209 (457) +.|+.++. +..+.+++........ ..............+++...|+.++....+.++|.|.+..+....-..... T Consensus 155 ~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~ 234 (469) T protein:vir:10 155 PRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKL 234 (469) T ss_pred ecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHHH Confidence 55665442 2223333222111000 000000111223456677777777766667889999999999999999999 Q ss_pred HHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPE 289 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~ 289 (457) .++...|....|.|--+.+.+...++++.+.+.+.+.....+. ...++++.|++++-+..+.+...|.++.++..++ T Consensus 235 ~~~w~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~---~a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~ 311 (469) T protein:vir:10 235 LRIEAATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGI---NAGVGLAQGQILELLGVSGNLPDIRRAIEGHDRS 311 (469) T ss_pred HHHHHHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCC---ceEEEccCCceEEEeecCCCchHHHHHHHHHHHH Confidence 9999999999999999999998888888887777776554332 2356788899988887666666788999999999 Q ss_pred HHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc-----ccceEEEecchhhhccH Q lcl|Aclame:pro 290 IARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-----RFRFVKFNLDEIKRGAP 364 (457) Q Consensus 290 Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~-----~~~~~~f~~~~~~~~d~ 364 (457) |+.++--.---.+ .. +.+++ ..+.+.......+.-.++.|+..||+.|+++.-. ...+.+|.++... .+. T Consensus 312 Isk~iLG~tlTs~-~~--gGS~a-~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~~e-~~~ 386 (469) T protein:vir:10 312 IALSGLAHFLNLD-GK--GGSYA-LASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDPIG-SRQ 386 (469) T ss_pred HHHHHhccccccc-Cc--cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCCC-CcH Confidence 9887522111111 11 11222 3455667788889999999999999988764321 1223344444443 566 Q ss_pred HHHHHHHHHHHhCCCc-----CHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc Q lcl|Aclame:pro 365 KERMELWSLGLQNGIY-----SIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP 439 (457) Q Consensus 365 ~~~~~~~~~~~~~g~~-----T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (457) +..++.++++++.|++ +.+.+|+.+|+|+-.+ ++....+. .+ ...+.... .. ......+..... T Consensus 387 ~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~--~~~~~~~~--~~-----~~~~~~~~-~~-~~~~~~~~~~~~ 455 (469) T protein:vir:10 387 DLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELN--DTPSAEPE--EP-----AAVPNQSA-AP-ARTRSSGNADAR 455 (469) T ss_pred HHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCC--Ccccccch--hc-----ccCCCCCc-cc-cccCCCCCcccc Confidence 7788999999999994 5577999999986544 33222111 00 00000000 00 000000000000 Q ss_pred ccCCCCccccccccccCC Q lcl|Aclame:pro 440 DNAEGDPDEGETEDDDDA 457 (457) Q Consensus 440 ~~~~~~~~~~~~~~~~~~ 457 (457) .... ..+.++-. || T Consensus 456 ~~~~-~~~~~~l~---da 469 (469) T protein:vir:10 456 ARAP-KADQGVLF---DA 469 (469) T ss_pred cccC-CChHHhhc---cC Confidence 0000 01111111 22 No 110 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.85 E-value=9.1e-22 Score=135.94 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=203.4 Q ss_pred Cchhhhhhcccccccccccccc--cccccchhhhcccccccCccccCH---H-HHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGR--AWEPYDPSIYNLGATASSGERVTP---H-DALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~---~-~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) ||+|-+ ++. ++.....+- .+.....+. ......+...+. . .+.+++.++++|+.+|+.+-+..+.+. T Consensus 1 ~~~~m~--~~~--~~~~~~D~~~~~~~~~~g~~---~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~ 73 (435) T protein:vir:79 1 MGVFMS--DKV--KAITKEDGYNEIFGSKDGTF---RPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVD 73 (435) T ss_pred CCcccc--ccc--ccchhhcchhhhhccccccc---ccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceec Confidence 999942 222 111121111 011111111 001111122222 2 235788899999999999999998874 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-cC----------CceeEEEEeccceeEE Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-AG----------PNIAGLDVLDPTKIHV 143 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~~----------g~~~~~~~l~p~~v~~ 143 (457) ...+. ..+...+.+- ...+-+...+....++|.+++++.. ++ |.+..+.++++.++++ T Consensus 74 g~~~~-------~~~~~~~~~l----~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~ 142 (435) T protein:vir:79 74 GVKNE-------KSFKSRWDEL----RLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITI 142 (435) T ss_pred CCChH-------HHHHHHHHHh----hHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccc Confidence 32211 1122222221 2334555566667788888877653 22 3455777788877765 Q ss_pred EEcCCCcccc--eeeEEEEEeeecccceeEEeccceEEEeccC------CccCCccccchh-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 HMVMVDGLRR--KVFEAYDIDADGNEVLLGWFTPRDVLHIPGM------MLPGDFVGCSPI-SYARESIGLALAAQKYGA 214 (457) Q Consensus 144 ~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~evih~~~~------~~~~~~~G~s~~-~~~~~~i~~~~~~~~~~~ 214 (457) .....+.... .-...|.+.. .+......+-++.|||+... .+.+..+|.|++ +.+.+.|.....+..... T Consensus 143 ~~~~~dp~sp~fg~P~~y~v~~-~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~ 221 (435) T protein:vir:79 143 HERETNARSVRYGEPKLYKISP-GGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELAT 221 (435) T ss_pred hhhccCCcccccCcceEEEEec-CCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 4332221111 1112233321 22223456788889998642 334567899998 688899999998888888 Q ss_pred HHHHccCCcceEEe-cCCCC-CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 HFFRNGAMPGAVVE-VPGTM-SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIAR 292 (457) Q Consensus 215 ~~~~n~~~~~~~~~-~~~~~-~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~ 292 (457) ..+........-+. +...+ +++.......++......-++.+.+++.+++.+++.++.+.++ +.+.......+||+ T Consensus 222 ~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaa 299 (435) T protein:vir:79 222 QLLRRKQQAVWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG--VPEFLQEKIDRIVA 299 (435) T ss_pred HHHHHhcCccccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC--HHHHHHHHHHHHHh Confidence 87766544432221 11111 1222223333333332222344566666666788888877766 45778888999999 Q ss_pred HhCCCHHHhccccccccccchHHHHHHHHHHH-------HHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHH Q lcl|Aclame:pro 293 IFGVPPHLISDATNSTSWGSGLAEQNIAFTMF-------SLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPK 365 (457) Q Consensus 293 ~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~-------~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~ 365 (457) +.+||..+|.....++.+ ++.+.....|+.. .+.|.+..+-.. ++.. ..|.|.+++|...+.+ T Consensus 300 a~~IP~t~L~G~s~~gln-stgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~l----i~~s-----~d~~~~f~pL~~~sek 369 (435) T protein:vir:79 300 LTGIHEIIIKNKNTGGVS-ASQNTALETFYKLIDRKRVEDYKPILEFLLPF----MISE-----TEWSIEFEPLSVPSDK 369 (435) T ss_pred hhCCCeeeeccCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcC-----CCCeEEeCCCCCCCHH Confidence 999999887443344432 2234445555543 234433333222 2211 2355667778777775 Q ss_pred HH-------HHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCC Q lcl|Aclame:pro 366 ER-------MELWSLGLQNGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDE 437 (457) Q Consensus 366 ~~-------~~~~~~~~~~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (457) ++ ++++++++++|+++++|+|+++ ...+..+-.++.. ..++. ..+.+ T Consensus 370 EkAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~------~~~~~-------------------~~d~~ 424 (435) T protein:vir:79 370 DKAEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDN------IELPE-------------------PEDLD 424 (435) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCccc------ccCCc-------------------cccCC Confidence 54 4556677999999999999987 3222111001000 00000 00011 Q ss_pred CcccCCCCccc Q lcl|Aclame:pro 438 EPDNAEGDPDE 448 (457) Q Consensus 438 ~~~~~~~~~~~ 448 (457) +++..|+..++ T Consensus 425 ~~~~~e~g~~~ 435 (435) T protein:vir:79 425 PEPGQEGGLNK 435 (435) T ss_pred CCCCCCCCCCC Confidence 11111111111 No 111 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.85 E-value=7.1e-21 Score=131.05 Aligned_cols=433 Identities=13% Similarity=0.016 Sum_probs=212.2 Q ss_pred Cchhhhhhccc---------------------------ccccccccccccccccchh---hhcccccccCccccCHHHHh Q lcl|Aclame:pro 1 MGFWSALFGRG---------------------------HSPALDAAEGRAWEPYDPS---IYNLGATASSGERVTPHDAL 50 (457) Q Consensus 1 Mg~~~~l~~~~---------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~ 50 (457) |.+..+.-... .......+.....+++... ...+......+..+ ...+. T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql-~alY~ 144 (862) T protein:vir:99 66 VEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQA-CALIA 144 (862) T ss_pred ccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccCcccHHH-HHHHH Confidence 22211110000 0000000000000000000 00000000111111 23455 Q ss_pred ccHHHHHHHHHHHHhhccCceEEEEeccCcee-eecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe---c Q lcl|Aclame:pro 51 QVSAVFASVRLLSETIATLPLSTYSKRGGTRK-EIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW---A 126 (457) Q Consensus 51 ~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~-~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~---~ 126 (457) +++.++.+|+.+|+.+.+-.+.+....++... ......+...+.+- ...+-+...+.+.-++|.+++++.. + T Consensus 145 ~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL----~v~~~l~eair~~RLyGga~ililv~~~D 220 (862) T protein:vir:99 145 QHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEF----KVKENLIEFNRFKNVFGIRVAIFVVDSED 220 (862) T ss_pred hCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHh----hHHHHHHHHHHhcccccceEEEEEecCcC Confidence 78999999999999999999988754332211 11111222222222 2233344445555677777666542 1 Q ss_pred C--------------CceeEEEEeccceeEEEEc----CCCccccee-eEEEEEeeecccceeEEeccceEEEeccCCc- Q lcl|Aclame:pro 127 G--------------PNIAGLDVLDPTKIHVHMV----MVDGLRRKV-FEAYDIDADGNEVLLGWFTPRDVLHIPGMML- 186 (457) Q Consensus 127 ~--------------g~~~~~~~l~p~~v~~~~~----~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~evih~~~~~~- 186 (457) . |.+..+.+|.|.++.+... .+-....+. -..|.+. ...+-++-|||+..... T Consensus 221 ~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~-------g~~IH~SRliif~g~~vp 293 (862) T protein:vir:99 221 PDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS-------GQKYHRSHLIIARGPQPA 293 (862) T ss_pred chhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeec-------CeeeccceeEEecCCCch Confidence 1 2345677777776654321 111111111 1122221 12456677787755432 Q ss_pred -----cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceec Q lcl|Aclame:pro 187 -----PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALL 261 (457) Q Consensus 187 -----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl 261 (457) ...++|.|.++.+...|.....+......++.+......-+..-..+..+ +.+.+++......-+| .+++++ T Consensus 294 d~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~~l~~e--d~l~~r~~~~~~~rdN-~Gi~li 370 (862) T protein:vir:99 294 DILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTAKAIANE--DKFIQRLMFWVRYRDN-HAVKVL 370 (862) T ss_pred hhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhHhhhccH--HHHHHHHHHHHhccCc-ceeEEe Confidence 33457999999999999999999999999888866554333222223222 2333333333333233 558889 Q ss_pred cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHH-------HHHhhHHHHH Q lcl|Aclame:pro 262 TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERI 333 (457) Q Consensus 262 ~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~i 333 (457) +.+.+|+.++.+..+. .+.+.....+||.+.+||..+| |....+..++ .++..++|+. .-|.|++..+ T Consensus 371 D~eEe~e~ls~slSGL--~dll~~~~q~IAaas~IP~tiLfGqspaGlnAT--GE~D~~nYyD~I~s~QE~~L~P~LerL 446 (862) T protein:vir:99 371 GTDETMEQFDTSLADF--DAVIMGQYQLVASIAKTPATKLLGTAPKGFNST--GEFETISYHEELESIQEHVYMPFLQRH 446 (862) T ss_pred cCCCceeEEecccCCh--HHHHHHHHHHHHhhhCCCceeecccCcccccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9888999888777764 4667778889999999999965 5443333322 3444455554 4577888888 Q ss_pred HHHHHhhhcCccccccceEEEecchhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHh------CCCCCCCCCC- Q lcl|Aclame:pro 334 EAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMEL-------WSLGLQNGIYSIDEVRAAE------DMTPLPDGLG- 399 (457) Q Consensus 334 e~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~-------~~~~~~~g~~T~nE~R~~~------G~~p~~~~~g- 399 (457) ...+...+..+ ..+.|.+++|...+.+++++. +++++++|++|++|+|+++ |++.++++.. T Consensus 447 ~~li~~~lg~~-----~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E 521 (862) T protein:vir:99 447 YLISRLSLGIQ-----HEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAE 521 (862) T ss_pred HHHHHHhcCCC-----CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCccccc Confidence 87765544211 135566778888887776655 6788999999999999975 5554443211 Q ss_pred -ceeeecccccccccccccccccCCCccCCCC----CCCCCCCCcccC---CCCcc---cccc-----ccccCC Q lcl|Aclame:pro 400 -EKYRVPLNLGEIGEEPEPEPAPAPPAIDPPA----EEPADDEEPDNA---EGDPD---EGET-----EDDDDA 457 (457) Q Consensus 400 -d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~---~~~~-----~~~~~~ 457 (457) +....+.|.................+...+. .+..++..+... .++.. .+.+ .++|.+ T Consensus 522 ~d~~~~~e~~~~~e~~g~a~~~ap~de~~aga~~~~~e~d~~~~p~~~~~~~g~~~~~t~~~~a~~p~~~~~~~ 595 (862) T protein:vir:99 522 ETPGASPENLAAYQKAGAAQETASAKETQAGAAVTTAEGDQPNVQMVPSMKPGQMVGPEVGITAPMPEDDAPVA 595 (862) T ss_pred ccCCCCcccccccccCCcccccccccccccccCCccccCCcccccccCCCCCCCccccccccccCCCccccccC Confidence 1111222222222211111111000000000 000111011000 11110 0000 111111 No 112 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.84 E-value=1.6e-21 Score=134.57 Aligned_cols=438 Identities=12% Similarity=0.045 Sum_probs=233.4 Q ss_pred Cchhhhhhccccccc----------ccccccccccccchhhhcccccc-------cCccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA----------LDAAEGRAWEPYDPSIYNLGATA-------SSGERVTPHDALQVSAVFASVRLLS 63 (457) Q Consensus 1 Mg~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~v~~~i~~ia 63 (457) |+|++++.+..+... .....+........+.....+.. ..-...+++.+..++.+..+|+.+. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 999998765432110 00000000000000000000000 0000112333446899999999888 Q ss_pred HhhccC-ceEEEEeccCce---ee----ecCcchhhhccC--CCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC------ Q lcl|Aclame:pro 64 ETIATL-PLSTYSKRGGTR---KE----IDTPEWLDFPNA--EPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG------ 127 (457) Q Consensus 64 ~~ia~~-p~~~~~~~~~~~---~~----~~~~~~~~l~~~--pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~------ 127 (457) ..+-+. .+.+..+-.... .. .....+..+... ....+++.++...++..++..|++|+.++... T Consensus 81 ~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~~ 160 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLTP 160 (502) T ss_pred HhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccCC Confidence 888754 454433221110 00 001111222222 22346788999999999999999999986532 Q ss_pred --CceeEEEEeccceeEEEEc------------CCCcccceeeEEEEEee-ecccceeEEeccceEEEeccCCccCCccc Q lcl|Aclame:pro 128 --PNIAGLDVLDPTKIHVHMV------------MVDGLRRKVFEAYDIDA-DGNEVLLGWFTPRDVLHIPGMMLPGDFVG 192 (457) Q Consensus 128 --g~~~~~~~l~p~~v~~~~~------------~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~G 192 (457) +-+..+..|+|+++..... ..+....++ .+.... .........+++++|||+..+...+...| T Consensus 161 g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~--i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RG 238 (502) T protein:vir:79 161 SAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYL--VYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRG 238 (502) T ss_pred CcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEE--EeecCCCCCcccceeEechhheEEeecccCCccccC Confidence 1245778889988753221 111111110 111111 11233456799999999999888899999 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcce-eccCcceeeecc Q lcl|Aclame:pro 193 CSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVA-LLTEGAKFSKVA 271 (457) Q Consensus 193 ~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~-vl~~g~~~~~~~ 271 (457) +|.+..+...+.......++.+...+-.+...++|+.+...+..... .-..-... ...-..|.++ .|..|.+++.+. T Consensus 239 is~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~-~~~~~~~~-~~~l~pG~i~~~L~pGe~i~~~~ 316 (502) T protein:vir:79 239 TSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDG-NGSKENER-ELTIQPGIIYDDLKPGEEIGMVK 316 (502) T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccccc-CCCCCccc-cccccCCccccccCCCceeeeeC Confidence 99999999999999999999998888888999999875432111000 00000000 0112246554 589999999988 Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH---------HHHHHHHHHHHHhhHHHH-HHHHHHhhh Q lcl|Aclame:pro 272 MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL---------AEQNIAFTMFSLRPWLER-IEAGFNRLL 341 (457) Q Consensus 272 ~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~---------e~~~~~~~~~~l~P~~~~-ie~~l~~~l 341 (457) .+.....|.++.+...+.||+.+|||.+.|-...++|++++.. +..+..|...-++|+... ++.++-... T Consensus 317 p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~ 396 (502) T protein:vir:79 317 SDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGV 396 (502) T ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 7766778899999999999999999999884433445544321 122223444555554443 455554444 Q ss_pred cCc--cccccc--eEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccc-cccccccc Q lcl|Aclame:pro 342 FAE--TADRFR--FVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNL-GEIGEEPE 416 (457) Q Consensus 342 l~~--~~~~~~--~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~-~~~~~~~~ 416 (457) ++- ...... .+.+-.-.....|+.+.+++...++++|+.|.-++-.+.|.++-+- -++.-.-... ...+-... T Consensus 397 i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v--~~q~a~e~~~~~~~Gl~~~ 474 (502) T protein:vir:79 397 IRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDV--KRRRKAEIDENRKLDLVFD 474 (502) T ss_pred CCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH--HHHHHHHHHHHHHcCCCCC Confidence 431 111111 2233334556789999999999999999999999888889876421 1111100000 00000000 Q ss_pred cccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 417 PEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) ..+...+. ......+.+++....++.++ T Consensus 475 ~~~~~~~~----~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 475 TDPASDKG----GSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred CCCCCCCC----CCCCCCCCCCCCCCCCCCCC Confidence 00000000 00011111111111111111 No 113 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.81 E-value=1.3e-19 Score=124.13 Aligned_cols=431 Identities=15% Similarity=0.061 Sum_probs=210.4 Q ss_pred Cchhhhhhccccc------------------------------------ccccc---ccc------------cc-ccccc Q lcl|Aclame:pro 1 MGFWSALFGRGHS------------------------------------PALDA---AEG------------RA-WEPYD 28 (457) Q Consensus 1 Mg~~~~l~~~~~~------------------------------------~~~~~---~~~------------~~-~~~~~ 28 (457) |=-++|+|+|+.. +.... ... +. .+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~ 80 (765) T protein:vir:96 1 MFKLSWIFGRKKDNAACSESAPEKVARIPQHDPLDPMIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPT 80 (765) T ss_pred CceeeeecccccccccccccCchhhhhcCCCCCcccchhHHHHhhcccccccCCCCCCCCcccCcccceecccccccccc Confidence 2222333332110 00000 000 00 00000 Q ss_pred hhhhccc-cccc----------------CccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhh Q lcl|Aclame:pro 29 PSIYNLG-ATAS----------------SGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLD 91 (457) Q Consensus 29 ~~~~~~~-~~~~----------------~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~ 91 (457) ..+..+. +... .+..+ ...+.++..++.+|+.+|+.+-+-++.+....++. .......+.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql-~alY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~-~~~~~~~l~~ 158 (765) T protein:vir:96 81 PAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQA-CAIISQHWLVDKACSMSGEDAARNGWELKSDGRKL-SDEQSALIAR 158 (765) T ss_pred chHHHhhhccCccchhhHHHhhhcccCCccHHH-HHHHHhCchhhhhhhcchHHhhcCCceeecCcccc-CHHHHHHHHH Confidence 0000000 0000 00011 12244788899999999999999888885432211 1111111222 Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec---C--------------CceeEEEEeccceeEEEEcCC---C-- Q lcl|Aclame:pro 92 FPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA---G--------------PNIAGLDVLDPTKIHVHMVMV---D-- 149 (457) Q Consensus 92 l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~---~--------------g~~~~~~~l~p~~v~~~~~~~---~-- 149 (457) .+.+- ...+-+...+.+..++|.+|+++.-. . |.+..+..+.|..+....... + T Consensus 159 ~~~rl----~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~ 234 (765) T protein:vir:96 159 RDMEF----RVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPS 234 (765) T ss_pred HHHHh----hHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhcccccc Confidence 22222 23455666667778888888776432 1 234455666665554432110 1 Q ss_pred -cccceeeEEEEEeeecccceeEEeccceEEEeccCC------ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 150 -GLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM------LPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAM 222 (457) Q Consensus 150 -~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~ 222 (457) ...+. -..|.+. ...+-++-|||+.... +....+|.|.++.+...|.....+......++.+... T Consensus 235 sp~fg~-P~~y~i~-------g~~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~ 306 (765) T protein:vir:96 235 AEHFYE-PDFWIIS-------GKKYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRT 306 (765) T ss_pred ccccCc-ceeeeec-------CceeccceEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 00111 1122211 1346678889886544 2345679999999999999999999888888888766 Q ss_pred cceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh- Q lcl|Aclame:pro 223 PGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI- 301 (457) Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l- 301 (457) ...-+.....+..+ +.+.+++......-+ ..++++++.+.+|+.++.+..+ +.+.+....++||.+.+||...| T Consensus 307 ~v~k~~~~~~l~~~--~~l~~r~~~~~~~r~-n~g~~~id~ee~~e~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~Lf 381 (765) T protein:vir:96 307 STIHVDVEKAIANE--DAFNARLAFWIANRD-NHGVKVIGIDETMEQFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLL 381 (765) T ss_pred ceeeechHhhhccH--HHHHHHHHHHHHhcC-CceeEEecCCcceeEEecccCC--HHHHHHHHHHHHHhhhCCCeeeec Confidence 54444333232222 233444433333323 3567889889999999887776 45677888999999999999776 Q ss_pred ccccccccccchHHHHHHHHHH-------HHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHH----- Q lcl|Aclame:pro 302 SDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERME----- 369 (457) Q Consensus 302 g~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~----- 369 (457) |....+..++ .+...+.|+. ..+.|.+..+-+.|-+. +.....+.|.++.|...+.+++++ T Consensus 382 Gqsp~GlnAT--Ge~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s-----~~i~~d~~i~FnpL~~~sekEkAei~~k~ 454 (765) T protein:vir:96 382 GTSPKGFNAT--GEHETISYHEELESIQEHIFDPLLERHYLLLAKS-----ESIDVQLEIVWNPVDSTTSQQQAELNNKK 454 (765) T ss_pred cCCcccccCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCcceEEeCCCCCCCHHHHHHHHHHH Confidence 4432333222 3444555554 34555555444443321 111124667778888777776655 Q ss_pred --HHHHHHhCCCcCHHHHHHHhCCCCC------CCCC--CceeeecccccccccccccccccCC----CccCCCCCCCCC Q lcl|Aclame:pro 370 --LWSLGLQNGIYSIDEVRAAEDMTPL------PDGL--GEKYRVPLNLGEIGEEPEPEPAPAP----PAIDPPAEEPAD 435 (457) Q Consensus 370 --~~~~~~~~g~~T~nE~R~~~G~~p~------~~~~--gd~~~~~~n~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 435 (457) ++++++++|+++++|+|+++...+. +++. .+....|.+....+........... ++..+...++.. T Consensus 455 Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~ 534 (765) T protein:vir:96 455 AATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAG 534 (765) T ss_pred HHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCccccccCCCCccCCCC Confidence 4777899999999999999865443 2111 1112222222222221111100000 000000111111 Q ss_pred CCCcccC----------CCCccccccccccCC Q lcl|Aclame:pro 436 DEEPDNA----------EGDPDEGETEDDDDA 457 (457) Q Consensus 436 ~~~~~~~----------~~~~~~~~~~~~~~~ 457 (457) ++.+... .....+..++-++++ T Consensus 535 ~~~~~~p~~~~p~~~~~~~~~g~~~~~p~~~~ 566 (765) T protein:vir:96 535 DPVPAAPRGTKPLAKAAEEGAGEAATPPSRPN 566 (765) T ss_pred cccccCCcccCCccccccccCccccCcccccc Confidence 1110000 000111111111222 No 114 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.81 E-value=2.4e-20 Score=128.16 Aligned_cols=401 Identities=14% Similarity=0.100 Sum_probs=207.8 Q ss_pred Cchhhhhhcc-cccccc---c--ccccccccccchhhhcccccccCccccCHH----HHhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 1 MGFWSALFGR-GHSPAL---D--AAEGRAWEPYDPSIYNLGATASSGERVTPH----DALQVSAVFASVRLLSETIATLP 70 (457) Q Consensus 1 Mg~~~~l~~~-~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~v~~~i~~ia~~ia~~p 70 (457) |+=.+.-.-+ ....+. . .+.+... ..+.......+ ....++.. .+.++..++.+|+.+|+.+-+-+ T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~-~~d~~~~~~~~---~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g 76 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKAN-SRDKLTRQTPG---NGQKLDLKACENLYASNSIAMNIVDIISEDMVRAG 76 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcc-hhhhhhccccC---cccccCHHHHHHHHHhCCccchhhccchHHhhcCC Confidence 4433211000 000000 0 0000000 00111111111 11123332 33467888999999999999888 Q ss_pred eEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------------ceeEE Q lcl|Aclame:pro 71 LSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP-----------------NIAGL 133 (457) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g-----------------~~~~~ 133 (457) +.+...+++.. ..+...+.+- ...+-+...+.+..++|.+++++...++ ++..+ T Consensus 77 ~~i~~~~~~~~-----~~~~~~~~~l----~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l 147 (461) T protein:vir:80 77 WSLKTDNKEMK-----KNIESKWRKL----KTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYI 147 (461) T ss_pred eeeecCCHHHH-----HHHHHHHHHh----hHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEE Confidence 87753221111 1122222221 2344566666778899999988753221 11122 Q ss_pred EEeccceeEEEEcCCC---cccceeeEEEEEee----------ecccceeEEeccceEEEeccCCccCCccccchhHHHH Q lcl|Aclame:pro 134 DVLDPTKIHVHMVMVD---GLRRKVFEAYDIDA----------DGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYAR 200 (457) Q Consensus 134 ~~l~p~~v~~~~~~~~---~~~~~~~~~y~~~~----------~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~ 200 (457) .++.+..+.......+ ...+. ...|.+.. .........+-++.|||+......+..+|.|.++.+. T Consensus 148 ~~~~~~~i~~~~~~~dp~sp~fg~-P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~ 226 (461) T protein:vir:80 148 NTFNTQKVTQLYLNQDMFSEHFGE-VEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLY 226 (461) T ss_pred EeccccccchhhhcccCcCccccc-ceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHH Confidence 2222222211111111 11111 11122211 0112233568889999999888888889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCcceEEecC--CCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHH Q lcl|Aclame:pro 201 ESIGLALAAQKYGAHFFRNGAMPGAVVEVP--GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQ 278 (457) Q Consensus 201 ~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~ 278 (457) ..|.....+......++.+...+. ++++ ..+..+......+.+.... +..++++++.+.+++.++.+..+ T Consensus 227 ~~l~~~~~~~~~~~~l~~~~~~~v--~k~~~l~~~~~~~~~~~~~~~~~~~----~~~g~~~~d~~e~~e~~~~~lsg-- 298 (461) T protein:vir:80 227 DIITVMDTSLWSVGQILYDFAFKV--YKTDDIDALNKDDKANLTAMLDFMF----RTEALAIIKGDEQLTKESTNVSG-- 298 (461) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--eecchHHhhhchHHHHHHHHHHHhc----CCceEEEEcCCcceEEEecCcCC-- Confidence 999999999999988887765543 3333 2223333344444444332 23557888888899999887776 Q ss_pred HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHH-------HHHhhHHHHHHHHHHhhhcCccc---cc Q lcl|Aclame:pro 279 FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERIEAGFNRLLFAETA---DR 348 (457) Q Consensus 279 ~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~l~~~ll~~~~---~~ 348 (457) +.+........||.+.+||..+|.....+..+ +.++..+.|+. .-+.|++..+-..+-+..+.... .. T Consensus 299 l~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~a--sge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~ 376 (461) T protein:vir:80 299 MKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLT--GAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPD 376 (461) T ss_pred HHHHHHHHHHHHhhhhcCCeeeeecccCCccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc Confidence 44778899999999999999877443333332 23444444443 34566666666655543332211 12 Q ss_pred cceEEEecchhhhccHHHHHH-------HHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccc Q lcl|Aclame:pro 349 FRFVKFNLDEIKRGAPKERME-------LWSLGLQNGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPA 420 (457) Q Consensus 349 ~~~~~f~~~~~~~~d~~~~~~-------~~~~~~~~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~ 420 (457) ...+.|.++++...+.+++++ ++++++++|++|++|+|+.+ +.-..+.+ + ++..+... T Consensus 377 ~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~-~-------~~~~~~~~------ 442 (461) T protein:vir:80 377 SFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENS-S-------KFSGDSAE------ 442 (461) T ss_pred ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCC-c-------cCCCCCch------ Confidence 345778888888878777655 47788999999999999865 22111110 0 00000000 Q ss_pred cCCCccCCCCCCCCCCCCcccCCC Q lcl|Aclame:pro 421 PAPPAIDPPAEEPADDEEPDNAEG 444 (457) Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~ 444 (457) .++......+....++.+| T Consensus 443 -----~~~~~~~~~~~~~~e~~~g 461 (461) T protein:vir:80 443 -----IDKLAKLVYDAYAKKNADG 461 (461) T ss_pred -----hhhhhhhccccccccCCCC Confidence 0000000000011111111 No 115 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.81 E-value=5.4e-19 Score=120.75 Aligned_cols=416 Identities=10% Similarity=0.023 Sum_probs=233.4 Q ss_pred Cchh-hhhhccccccc-ccccccc-ccccc-chhhhccccccc-----------CccccC----HHHH-hccHHHHHHHH Q lcl|Aclame:pro 1 MGFW-SALFGRGHSPA-LDAAEGR-AWEPY-DPSIYNLGATAS-----------SGERVT----PHDA-LQVSAVFASVR 60 (457) Q Consensus 1 Mg~~-~~l~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~-----------~~~~v~----~~~~-~~~~~v~~~i~ 60 (457) |+-+ +. .||+-... ....... ..... .+......+.+. .+.... .+.. .+.+.|.+|++ T Consensus 1 ~~~~~d~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~ 79 (528) T protein:vir:10 1 MAAIVDI-YGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMS 79 (528) T ss_pred CCeeECC-CCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHH Confidence 6643 43 34432211 1110000 00000 000011111111 111111 1111 25889999999 Q ss_pred HHHHhhccCceEEEEeccCce-eeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--C--CceeEEEE Q lcl|Aclame:pro 61 LLSETIATLPLSTYSKRGGTR-KEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--G--PNIAGLDV 135 (457) Q Consensus 61 ~ia~~ia~~p~~~~~~~~~~~-~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~--g~~~~~~~ 135 (457) .+...|.+++|.|....++.. .......+..++..- -.+.+++.. +.+.+++|.++.+++.. + ..+..+.+ T Consensus 80 ~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~f~~~i~~-~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (528) T protein:vir:10 80 KRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDL---EGIEDLMLD-CMDGVGHGYSAIELDWSLQGREWLPQAFDH 155 (528) T ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCC---ccHHHHHHH-HHhhhhhcceeEEEEEeecCCceeEEEeee Confidence 999999999999976443322 111222233333221 124445544 34478899999999753 2 34567778 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAH 215 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~ 215 (457) .++.++.+..+. +.. +.... +......+++...+..++....+.++|.+.+..+...........++... T Consensus 156 r~~~~f~~~~~~--~~~------l~~~~--~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~ 225 (528) T protein:vir:10 156 RPQSWFQLNPDD--QDE------LRLRD--NSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAE 225 (528) T ss_pred ecccceeeccCC--CcE------EeccC--CCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHH Confidence 888777654332 221 11111 11122345555544445555567789999999999999999999999999 Q ss_pred HHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCCh-hHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 216 FFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSP-DEAQFLQTRQFQVPEIARIF 294 (457) Q Consensus 216 ~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~-~d~~~~e~~~~~~~~Ia~~f 294 (457) |....|+|--+.+.+...++++.+.+.+.+.+.-. ...++++.|++++-+..+. .-..|.++.++..++|+.+. T Consensus 226 f~E~yG~P~~igky~~~a~~~ek~~L~~al~~i~~-----~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i 300 (528) T protein:vir:10 226 MLEIYGLPIRLGKYPPGTPDEEKVTLLRAVTGLGH-----AAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAI 300 (528) T ss_pred HHHHcCCCeEEEecCCCCCHHHHHHHHHHHHHHhh-----CcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHH Confidence 99999999999999988899988888887766533 2357777887776665432 22347788888899988774 Q ss_pred CCCHHHhcccc------ccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccc--------cceEEEecchhh Q lcl|Aclame:pro 295 GVPPHLISDAT------NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR--------FRFVKFNLDEIK 360 (457) Q Consensus 295 gvpp~~lg~~~------~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~--------~~~~~f~~~~~~ 360 (457) ||... +++.+++ ..+.+.....+.+.-.++.|+..||+.|+.+.-.- ..+.+|.++... T Consensus 301 ------LGqtlTs~~~~g~~gS~A-lg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e 373 (528) T protein:vir:10 301 ------LGGTLTSQTSESGGGAYA-LGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKD 373 (528) T ss_pred ------hhhhhhccccccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCC Confidence 44221 1122222 22345567788889999999999999886544321 112345555566 Q ss_pred hccHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc Q lcl|Aclame:pro 361 RGAPKERMELWSLGLQNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP 439 (457) Q Consensus 361 ~~d~~~~~~~~~~~~~~g~-~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (457) ..|.+..++.++++++.|+ ++..++|+.+|+|.-.+ ++.+..+....+.. ............... T Consensus 374 ~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~p~~--~e~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---- 439 (528) T protein:vir:10 374 RADLAAMATSLPPLVKLGVQVPVNWVQEQLGIPLPAN--GEAVLGDQAGAGIA--------QLSRRPGPRIAALAQ---- 439 (528) T ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCC--CcccccCCCccccc--------ccCcccccccccccc---- Confidence 7888999999999999998 89999999999975433 44443322111100 000000000000000 Q ss_pred ccCCCCcccccccc--ccCC Q lcl|Aclame:pro 440 DNAEGDPDEGETED--DDDA 457 (457) Q Consensus 440 ~~~~~~~~~~~~~~--~~~~ 457 (457) .......+.....+ ++.+ T Consensus 440 ~~~~~~~~~~~~d~~~~~~~ 459 (528) T protein:vir:10 440 VIGPRYRDQEALDQVLASLP 459 (528) T ss_pred cccccccccchHHHHHHHHH Confidence 00000000000000 0000 No 116 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.79 E-value=8.5e-19 Score=119.64 Aligned_cols=410 Identities=12% Similarity=0.023 Sum_probs=232.8 Q ss_pred Cch-hhhhhccccc-ccccccc-ccccccc-chhhhccccccc-----------CccccC----HHHHh-ccHHHHHHHH Q lcl|Aclame:pro 1 MGF-WSALFGRGHS-PALDAAE-GRAWEPY-DPSIYNLGATAS-----------SGERVT----PHDAL-QVSAVFASVR 60 (457) Q Consensus 1 Mg~-~~~l~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~-----------~~~~v~----~~~~~-~~~~v~~~i~ 60 (457) |+- ++.. |++-. +...... ....... .+......+.+. .+.... .+..+ +.+.|.+|++ T Consensus 1 ~~~~~d~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~ 79 (526) T protein:vir:99 1 MAQIVDVY-GNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) T ss_pred CCeeECCC-CCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHH Confidence 654 3332 33221 1110000 0000000 000011111111 011111 11122 5899999999 Q ss_pred HHHHhhccCceEEEEeccCce-eeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--C--CceeEEEE Q lcl|Aclame:pro 61 LLSETIATLPLSTYSKRGGTR-KEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--G--PNIAGLDV 135 (457) Q Consensus 61 ~ia~~ia~~p~~~~~~~~~~~-~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~--g~~~~~~~ 135 (457) .+...|.+++|.|..-.++.. .......+..++..- -.+.+++..++ +.+++|.++.+++.. + ..+..+.+ T Consensus 80 ~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~ 155 (526) T protein:vir:99 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL---EGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcc---cCHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeee Confidence 999999999999976443321 112222233333221 13556666655 578999999999753 2 34667888 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccc-eEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPR-DVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGA 214 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~ 214 (457) .++.++.+..+....++ + .. +......+++. =|+| ++....+.++|.+.+..+...........++.. T Consensus 156 r~~~~f~~~~~~~~~l~------~--~~--~~~~g~~l~~~k~i~~-~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~ 224 (526) T protein:vir:99 156 RPQSWFQLNPEDQNELR------L--RD--NSPAGEALQPFGWIIH-RPRARSGYVARSGLFRVLAWPYLFRHYATSDLA 224 (526) T ss_pred ecccceeeccCCCcEEE------e--cC--CCCCceeecCCCeEEE-eecCCcCCccccchHHHHHHHHHHHHhhHHHHH Confidence 88887776443322111 1 11 11122345555 4455 455556788999999999999999999999999 Q ss_pred HHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCC-hhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 HFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQFLQTRQFQVPEIARI 293 (457) Q Consensus 215 ~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~ 293 (457) .|....|+|--+.+.+...++++.+.+.+.+.+.-+ ...++++.|++++-+..+ .....|.++.++..++|+.+ T Consensus 225 ~f~E~yG~P~~igky~~~a~~~ek~~L~~av~~i~~-----d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~ 299 (526) T protein:vir:99 225 EMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKA 299 (526) T ss_pred HHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHHhh-----CcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHH Confidence 999999999999999988899988888887766532 246778888777666543 23335778888999999877 Q ss_pred hCCCHHHhccccc------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccc--------cceEEEecchh Q lcl|Aclame:pro 294 FGVPPHLISDATN------STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR--------FRFVKFNLDEI 359 (457) Q Consensus 294 fgvpp~~lg~~~~------~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~--------~~~~~f~~~~~ 359 (457) + ||.... ++.|++ ..+.+.....+.+.-.++.|+..||+.|+.+.-.- ..+.+|.++.. T Consensus 300 i------LGqtlTs~~~~g~~gS~a-~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~ 372 (526) T protein:vir:99 300 V------LGGTLTSTTSQSGGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR 372 (526) T ss_pred H------hhhhhccccccCcchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCC Confidence 3 443211 112222 22445566788888999999999999887544321 11234555556 Q ss_pred hhccHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 360 KRGAPKERMELWSLGLQNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 360 ~~~d~~~~~~~~~~~~~~g~-~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) ...|.+..++.++++++.|+ ++..++|+.+|+|.-.+ ++..+.|.. ... ........ ...... T Consensus 373 e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~--~e~~l~~~~-----~~~-----~~~~~~~~----~~~~~~ 436 (526) T protein:vir:99 373 EQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRSAA-----QPA-----ILSRQHGQ----RVAALA 436 (526) T ss_pred CcccHHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCC--cccccCCCC-----CCc-----cccccccc----cccccc Confidence 67888999999999999998 89999999999975433 333332210 000 00000000 000000 Q ss_pred cccCCCCccccccccccCC Q lcl|Aclame:pro 439 PDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 439 ~~~~~~~~~~~~~~~~~~~ 457 (457) ....+..++. ..-|+. T Consensus 437 ~~~~~~~~~~---~~~d~~ 452 (526) T protein:vir:99 437 TIVGPRYGDQ---QALDKA 452 (526) T ss_pred ccccccCcch---hhHHHH Confidence 0000000000 000000 No 117 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.79 E-value=3e-19 Score=122.15 Aligned_cols=398 Identities=11% Similarity=0.032 Sum_probs=224.4 Q ss_pred hcccc-ccccc-cccccc-ccccchhh----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 8 FGRGH-SPALD-AAEGRA-WEPYDPSI----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 8 ~~~~~-~~~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) .+|.. ...+. ...++. +.++.... .........+.....+..++.+.|.+|++.+...|.+++|.|....++. T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~~~~ 80 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGGDRP 80 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCCCCh Confidence 11111 00000 000110 00000000 0000000011112235567899999999999999999999997644332 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--C--CceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--G--PNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~--g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) ........+..++.++ .+.++++.++ +.+++|.++.+++.. + ..+..+.+.|+.++.+.. .++... T Consensus 81 ~~~~~ae~v~~~l~~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~--~~~l~~--- 150 (488) T protein:vir:99 81 IDQAAAEHLEQQLQRV----GWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQ--DGGLRL--- 150 (488) T ss_pred HHHHHHHHHHHHHhCC----CHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccceeecC--CCceEE--- Confidence 2222223344444443 5677777765 578999999999764 2 345577788888776532 232211 Q ss_pred EEEEEeeecccceeEEeccc-e-EEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CC Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPR-D-VLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TM 233 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~-e-vih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~ 233 (457) ........ ...++.. . |+|. +....+.++|.|.+..+....-......++...|....|+|-.+.+.+. .. T Consensus 151 ---~~~~~~~~--g~~lp~~~~~i~~~-~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a 224 (488) T protein:vir:99 151 ---LTPNNMFE--GEPCPAPYFWHFST-GADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTA 224 (488) T ss_pred ---eccCCCCC--ccccccCceEEEEe-ecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCC Confidence 11111111 2233322 2 3343 3333467899999999999999999999999999999999999888874 56 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc---ccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLISDATN---STS 309 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~---~~~ 309 (457) ++++.+.+.+.+.+.-. ...++++.|++++-+..+ .....|.++.++..++|+.+ +||.... ++. T Consensus 225 ~~~ek~~l~~av~~~~~-----~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~------iLGqtlts~~~~G 293 (488) T protein:vir:99 225 TPEDKAKLLAALHAIQT-----DSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKV------GLGQVASTQGTPG 293 (488) T ss_pred CHHHHHHHHHHHHHHhc-----CcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHH------Hhhhhhccccccc Confidence 78877777777665432 345777777776666532 22235788888889999887 3332211 111 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc----ccceEEEecchhhhccHHHHHHHHHHHHhC-CC-cCHH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD----RFRFVKFNLDEIKRGAPKERMELWSLGLQN-GI-YSID 383 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~----~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~-g~-~T~n 383 (457) +++ ..+.+.......+...++.|+..||+.|+.+.-. ...+.+|.+......|.+..++.++++++. |+ ++.. T Consensus 294 s~a-~~~vh~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~ 372 (488) T protein:vir:99 294 RLG-NDDLQADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRG 372 (488) T ss_pred chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHH Confidence 222 2345556778889999999999999988764432 112223344445667889999999999996 65 7888 Q ss_pred HHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 384 EVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 384 E~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ++|+.+|+|+-.. ++....|. +....... ..+.++ .......-.++..++ T Consensus 373 ~i~e~~Gip~~~~--~~~~~~~~------------~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~ 422 (488) T protein:vir:99 373 YVQETYGVEVEST--QAEATAPT------------PSTEFAEG----DQPSDP------AAAMAPQLAEAMQPV 422 (488) T ss_pred HHHHHcCCCCccc--ccccccCC------------CcccCCCC----CCCCCc------hHHHHHHHHHHHHHH Confidence 8999999996443 22221110 00000000 000000 000000000000000 No 118 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.79 E-value=1.6e-19 Score=123.64 Aligned_cols=385 Identities=12% Similarity=0.057 Sum_probs=203.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCH-HHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTP-HDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) |--.+.+..-.. . +..... . ++.+.. ...... ..+.++..++++|+.+|+.+-+-.|.+....+. T Consensus 1 ~~~~D~~~n~~~----g---g~~~~~----~--~~~~~~-~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~ 66 (422) T protein:vir:10 1 MVKTDSYANIFL----G---GSDGSE----I--YGSLQN-QAPTILASLYADNALVRRIIDTIPETALAAGFHIDGIDDE 66 (422) T ss_pred CccchhhHHHHc----C---CCCCcc----c--cCcccc-cCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCCCHH Confidence 433333221100 0 000000 0 000000 001111 234478899999999999999988887432211 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-c----------CCceeEEEEeccceeEEEEcCC Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-A----------GPNIAGLDVLDPTKIHVHMVMV 148 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~----------~g~~~~~~~l~p~~v~~~~~~~ 148 (457) . .+..-+.+ ....+-+...+....++|.+++++.. + .|.+..+.++++..+++..... T Consensus 67 --~-----~~~~~~~~----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~ 135 (422) T protein:vir:10 67 --P-----AFWSRWDD----LEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREE 135 (422) T ss_pred --H-----HHHHHHHH----hhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhccc Confidence 1 11111222 12345566666667888999888753 2 2456678888888887654332 Q ss_pred Ccccc--eeeEEEEEeeecccceeEEeccceEEEeccC------CccCCccccchhHH-HHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 149 DGLRR--KVFEAYDIDADGNEVLLGWFTPRDVLHIPGM------MLPGDFVGCSPISY-ARESIGLALAAQKYGAHFFRN 219 (457) Q Consensus 149 ~~~~~--~~~~~y~~~~~~~~~~~~~~~~~evih~~~~------~~~~~~~G~s~~~~-~~~~i~~~~~~~~~~~~~~~n 219 (457) +.... .-...|.+... .......+-++.|||+... .+.+..+|.|++.. +.+.|.....+.......+.. T Consensus 136 dp~s~~fg~P~~y~v~~~-~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~ 214 (422) T protein:vir:10 136 NPRNARFGEPLTYRITTN-ESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKR 214 (422) T ss_pred CccccccCcceEEEEecC-CCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 21111 11122333222 2223356777889998543 24456789999986 679899999888888887777 Q ss_pred cCCcceEEec-CCCC-CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 220 GAMPGAVVEV-PGTM-SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVP 297 (457) Q Consensus 220 ~~~~~~~~~~-~~~~-~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvp 297 (457) ......-+.. .... +.......++++......-++.+.+++.+++.+|+.++.+.++ +.+.......+||++.+|| T Consensus 215 ~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP 292 (422) T protein:vir:10 215 KQQAVWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG--IDAFLDKKFDRIVALSGIH 292 (422) T ss_pred hccccccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC--hHHHHHHHHHHHHhhhCCC Confidence 6544332221 1111 1223333344444433333445667777777899999888776 4577888999999999999 Q ss_pred HHHhccccccccccchHHHHHHHHHHH-------HHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH---- Q lcl|Aclame:pro 298 PHLISDATNSTSWGSGLAEQNIAFTMF-------SLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE---- 366 (457) Q Consensus 298 p~~lg~~~~~~~~~~~~e~~~~~~~~~-------~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~---- 366 (457) ..+|.....++.++ +.++..+.|+.. -+.|.+..+-.. +... ..|.|.++++...+.++ T Consensus 293 ~t~L~G~s~~Glna-tgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~----i~~s-----~~~~~~f~pL~~~sekekaei 362 (422) T protein:vir:10 293 EIILKNKNVGGVSS-SQNTALETFHKLVDRKRNAELLPILEFLIPF----IVNA-----EEWSVEFNPLAQESSKDKAEI 362 (422) T ss_pred eeeeccCCcccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccc-----CCcEEEeCCCCCCCHHHHHHH Confidence 99884444444432 234444555543 344444333222 2211 13556666777777664 Q ss_pred ---HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 367 ---RMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 367 ---~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) .++++++++++|+++++|+|+.+--.....+.. .+..+.+.. . ....++ T Consensus 363 ~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~------~~~~~~~~~--------------~--~~~~~~------ 414 (422) T protein:vir:10 363 LEKNVNSIAALIAAGAMDIDEARDTLRTIAPEVKIN------DGSVETEVT--------------I--SETSND------ 414 (422) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccCC------CCCCccccc--------------h--hhcCCC------ Confidence 445577789999999999999873221111000 000000000 0 000000 Q ss_pred CCcccccccccc Q lcl|Aclame:pro 444 GDPDEGETEDDD 455 (457) Q Consensus 444 ~~~~~~~~~~~~ 455 (457) ..++.++| T Consensus 415 ----~~~~~~~d 422 (422) T protein:vir:10 415 ----PLEVPTDD 422 (422) T ss_pred ----CCCCCCCC Confidence 00000111 No 119 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.78 E-value=1.6e-18 Score=118.14 Aligned_cols=411 Identities=12% Similarity=0.024 Sum_probs=234.0 Q ss_pred Cch-hhhhhccccccc-ccccccccc-c-ccchhhhccccccc-----------CccccC----HHHHh-ccHHHHHHHH Q lcl|Aclame:pro 1 MGF-WSALFGRGHSPA-LDAAEGRAW-E-PYDPSIYNLGATAS-----------SGERVT----PHDAL-QVSAVFASVR 60 (457) Q Consensus 1 Mg~-~~~l~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~-----------~~~~v~----~~~~~-~~~~v~~~i~ 60 (457) |+- ++.. |++-... ......... . ..........+.+. .|.... .+..+ +.+.|.+|++ T Consensus 1 ~~~~~d~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~ 79 (526) T protein:vir:79 1 MAQIVDVY-GNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) T ss_pred CCeeeCCC-CCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHH Confidence 543 3432 3322111 000000000 0 00000001111110 111111 11222 5899999999 Q ss_pred HHHHhhccCceEEEEeccCce-eeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--C--CceeEEEE Q lcl|Aclame:pro 61 LLSETIATLPLSTYSKRGGTR-KEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--G--PNIAGLDV 135 (457) Q Consensus 61 ~ia~~ia~~p~~~~~~~~~~~-~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~--g~~~~~~~ 135 (457) .+...|.+++|.|..-.++.. .......+..++..- -.+.+++..++. .+++|.++.+++.. + ..+..+.+ T Consensus 80 ~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) T protein:vir:79 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL---EGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcc---cCHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeee Confidence 999999999999986443322 112222233333221 125566666444 78899999999754 2 34667778 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAH 215 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~ 215 (457) .++.++.+..+....++ + .. +......+++...|..++....+.++|.+.+..+....-......++... T Consensus 156 r~~~~F~~~~~~~~~l~------~--~~--~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~ 225 (526) T protein:vir:79 156 RPQSWFQLNPEDQNELR------L--RD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAE 225 (526) T ss_pred ecccceEeccCCCcEEE------e--cC--CCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHH Confidence 88887765433322111 1 11 11222345555444445555567889999999999999999999999999 Q ss_pred HHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCC-hhHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 216 FFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQFLQTRQFQVPEIARIF 294 (457) Q Consensus 216 ~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~f 294 (457) |....|+|--+.+.+...++++.+.+.+.+.+.-+ ...++++.|++++-+..+ .....|.++.++..++|+.+. T Consensus 226 F~E~yG~P~~igky~~~a~~~ek~~L~~av~~i~~-----da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i 300 (526) T protein:vir:79 226 MLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV 300 (526) T ss_pred HHHHcCCceEEEecCCCCCHHHHHHHHHHHHHHhc-----CcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH Confidence 99999999999999988899888888887776532 346778888877666643 233457888899999998773 Q ss_pred CCCHHHhccccc------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccccc--------cceEEEecchhh Q lcl|Aclame:pro 295 GVPPHLISDATN------STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR--------FRFVKFNLDEIK 360 (457) Q Consensus 295 gvpp~~lg~~~~------~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~--------~~~~~f~~~~~~ 360 (457) ||.... ++.|++ ..+.+.....+.+.-.++.|+..||+.|+.+.-.- ..+.+|.++... T Consensus 301 ------LGqtlTs~~~~g~~gS~a-~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e 373 (526) T protein:vir:79 301 ------LGGTLTSTTSQSGGGAFA-LGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLRE 373 (526) T ss_pred ------hhhhhccccccCcchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCC Confidence 443211 122222 23445667788889999999999999887644321 112345555566 Q ss_pred hccHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc Q lcl|Aclame:pro 361 RGAPKERMELWSLGLQNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP 439 (457) Q Consensus 361 ~~d~~~~~~~~~~~~~~g~-~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (457) ..|.+..++.++++++.|+ ++..++|+.+|+|.-.+ ++.++.|.. .. +........ ....... T Consensus 374 ~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~~~~--~e~~l~~~~-----~~-----~~~~~~~~~----~~~~~~~ 437 (526) T protein:vir:79 374 QADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRPAA-----QP-----AILSRQHGQ----RVAALAT 437 (526) T ss_pred cccHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCC--chhhccccC-----Cc-----ccccccccc----ccccccc Confidence 7888999999999999998 78899999999965332 333332210 00 000000000 0000000 Q ss_pred ccCCCCccccccccccCC Q lcl|Aclame:pro 440 DNAEGDPDEGETEDDDDA 457 (457) Q Consensus 440 ~~~~~~~~~~~~~~~~~~ 457 (457) ......++. ..-|++ T Consensus 438 ~~~~~~~~~---~~~d~~ 452 (526) T protein:vir:79 438 IVGPRYGDQ---QALDKA 452 (526) T ss_pred cccccCchh---hHHHHH Confidence 000000000 000000 No 120 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.78 E-value=5.4e-20 Score=126.22 Aligned_cols=432 Identities=12% Similarity=0.031 Sum_probs=241.5 Q ss_pred Cchhhhhhcccccccccccc--cccccc--cchhhhccc--ccccC-----------ccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAE--GRAWEP--YDPSIYNLG--ATASS-----------GERVTPHDALQVSAVFASVRLLS 63 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~~~-----------~~~v~~~~~~~~~~v~~~i~~ia 63 (457) |+++++.............. .+.++. .......+. ....+ ....+.+.+..++.+..+|+.+. T Consensus 8 ~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 87 (505) T protein:vir:96 8 PSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQLLK 87 (505) T ss_pred cchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 89998875532211110000 000000 000000000 00000 01112333446899999999888 Q ss_pred Hhhcc-CceEEEEeccCce-------eeecCcchhhhccCCCCC----CCHHHHHHHHHHHHHHcCCeEEEEEecCCc-- Q lcl|Aclame:pro 64 ETIAT-LPLSTYSKRGGTR-------KEIDTPEWLDFPNAEPGG----MGRIDILSQTVLSLLLQGNAFLAVRWAGPN-- 129 (457) Q Consensus 64 ~~ia~-~p~~~~~~~~~~~-------~~~~~~~~~~l~~~pn~~----~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~-- 129 (457) ..+-+ ..+++..+..... .......+..+...++.+ +++.++...++..++..|++|+.+++..+. T Consensus 88 ~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~~ 167 (505) T protein:vir:96 88 NNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPNKW 167 (505) T ss_pred HHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCCCc Confidence 88875 5776665432110 001112223333344433 568889999999999999999988765433 Q ss_pred eeEEEEeccceeEEEEcCC---C-----ccc-ceeeE--EEEEeee----------cccceeEEeccceEEEeccCCccC Q lcl|Aclame:pro 130 IAGLDVLDPTKIHVHMVMV---D-----GLR-RKVFE--AYDIDAD----------GNEVLLGWFTPRDVLHIPGMMLPG 188 (457) Q Consensus 130 ~~~~~~l~p~~v~~~~~~~---~-----~~~-~~~~~--~y~~~~~----------~~~~~~~~~~~~evih~~~~~~~~ 188 (457) +..+..|+|+.+....+.. + |+. ..... .|.+... ........+++.+|||+..+...+ T Consensus 168 ~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r~g 247 (505) T protein:vir:96 168 GYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWRPH 247 (505) T ss_pred ceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccCCc Confidence 4567888888875332211 0 110 00001 1111110 111334568889999999988889 Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceee Q lcl|Aclame:pro 189 DFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFS 268 (457) Q Consensus 189 ~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~ 268 (457) ...|+|.+..+...+.......++.....+-.+...++|+.+............ ......-..|.+..|..|.+++ T Consensus 248 Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~----~~~~~~l~pG~i~~L~pGe~i~ 323 (505) T protein:vir:96 248 QNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQ----GEIVEEVEAGTYQLLPYGIRFK 323 (505) T ss_pred cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCcccccc----CccccccCCceeeecCCCCeee Confidence 999999999999999999999999999888888999999876432111100000 0011113457899999999999 Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchH---------HHHHHHHHHHHHhhHHH-HHHHHH Q lcl|Aclame:pro 269 KVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGL---------AEQNIAFTMFSLRPWLE-RIEAGF 337 (457) Q Consensus 269 ~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~---------e~~~~~~~~~~l~P~~~-~ie~~l 337 (457) .+..+.....|.++.+.+.+.||+.+|||.+.| |...+.|+|.+.. +..+..|...-+.|+.. .++.++ T Consensus 324 ~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~ 403 (505) T protein:vir:96 324 EHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSL 403 (505) T ss_pred eeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 998886777889999999999999999999988 5555566654321 12223444556666544 355555 Q ss_pred HhhhcCccc--cc-cceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccc Q lcl|Aclame:pro 338 NRLLFAETA--DR-FRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEE 414 (457) Q Consensus 338 ~~~ll~~~~--~~-~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~ 414 (457) -...++-.. .. ...+.+-.-.....|+.+.+++...++++|+.|+-|+-.+.|.++-+- -++.-.-. ..+... T Consensus 404 l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v--~~q~a~e~--~~~~~~ 479 (505) T protein:vir:96 404 LTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDV--FDEIAWEE--QLMRDK 479 (505) T ss_pred HcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH--HHHHHHHH--HHHHHc Confidence 544443221 11 122334344556789999999999999999999999888789876431 11111000 000000 Q ss_pred cccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccC Q lcl|Aclame:pro 415 PEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDD 456 (457) Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (457) . - ..............++++...+| + T Consensus 480 G---l---~~~~~~~~~~~~~~~~~~~~~~d----------~ 505 (505) T protein:vir:96 480 G---V---NPTPPEQESKDATTDEEDDSASD----------D 505 (505) T ss_pred C---C---CCCCCCCCCCCCCCCCCCCCCCC----------C Confidence 0 0 00000000000011111111111 1 No 121 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.77 E-value=4.9e-20 Score=126.47 Aligned_cols=454 Identities=13% Similarity=0.024 Sum_probs=231.5 Q ss_pred Cchhhhhhcccccccc----------cccccccccccchhhhccccc-------ccCccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL----------DAAEGRAWEPYDPSIYNLGAT-------ASSGERVTPHDALQVSAVFASVRLLS 63 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~v~~~i~~ia 63 (457) ||||+++.+....... ....+.........+....+. .......+.+.+..++.+..+|+.+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 80 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLE 80 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 9999988664432100 000000000000000000000 00001112333445899999999987 Q ss_pred Hhhcc-CceEEEEe--ccCcee--e---ecCcchhhhccC--CCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC------ Q lcl|Aclame:pro 64 ETIAT-LPLSTYSK--RGGTRK--E---IDTPEWLDFPNA--EPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG------ 127 (457) Q Consensus 64 ~~ia~-~p~~~~~~--~~~~~~--~---~~~~~~~~l~~~--pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~------ 127 (457) +.+-+ ..+.+..+ ..+... . .....+..+... ....+++.++...++..++..|++|+.+.+.. T Consensus 81 ~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~ 160 (548) T protein:vir:95 81 ERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTF 160 (548) T ss_pred HhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccccC Confidence 77764 23333222 111110 0 001111222222 22346789999999999999999999886532 Q ss_pred C--ceeEEEEeccceeEEEEcCCCccc----------ceeeEE-EEEee-----ecccceeEEeccceEEEeccCCccCC Q lcl|Aclame:pro 128 P--NIAGLDVLDPTKIHVHMVMVDGLR----------RKVFEA-YDIDA-----DGNEVLLGWFTPRDVLHIPGMMLPGD 189 (457) Q Consensus 128 g--~~~~~~~l~p~~v~~~~~~~~~~~----------~~~~~~-y~~~~-----~~~~~~~~~~~~~evih~~~~~~~~~ 189 (457) | -+..+..|+|+.+.......++.. ....++ +.... .........+++++|||+..+...+. T Consensus 161 g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~gQ 240 (548) T protein:vir:95 161 ATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIGQ 240 (548) T ss_pred CcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCCcc Confidence 1 235778888887743322221110 011111 11100 01223456789999999998888889 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcc-eeccCcceee Q lcl|Aclame:pro 190 FVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRV-ALLTEGAKFS 268 (457) Q Consensus 190 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~ 268 (457) ..|+|.+..+...+.......++.....+-.+...++|+.+....... ......- .....-..|.+ ..|..|.+++ T Consensus 241 ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~-~~~~~~~--~~~~~~~pG~iv~~L~pGe~i~ 317 (548) T protein:vir:95 241 NRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTV-EPGKDRK--NRTIPIAPGMVFDDLEPGEDVG 317 (548) T ss_pred ccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccC-CCCcccc--cccccccCCccccccCCCceee Confidence 999999999999999999999999998888888999998764321110 0000000 00011223554 4588999999 Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchH---------HHHHHHHHHHHHhhHHH-HHHHHHH Q lcl|Aclame:pro 269 KVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL---------AEQNIAFTMFSLRPWLE-RIEAGFN 338 (457) Q Consensus 269 ~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~---------e~~~~~~~~~~l~P~~~-~ie~~l~ 338 (457) .++.+.....|.++.+...+.||+.+|||.+.|-...++|+|+... +..+..|+..-+.|+.. .++.++- T Consensus 318 ~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l 397 (548) T protein:vir:95 318 MIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLL 397 (548) T ss_pred ecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8887766678899999999999999999999884433455544321 12223344455566333 3455554 Q ss_pred hhhcC--ccccccceEEEe--cchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--------CCCceeeecc Q lcl|Aclame:pro 339 RLLFA--ETADRFRFVKFN--LDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD--------GLGEKYRVPL 406 (457) Q Consensus 339 ~~ll~--~~~~~~~~~~f~--~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~--------~~gd~~~~~~ 406 (457) ...++ .......++... .-.....|+.+.+++...++++|+.|.-|+-.+.|.++-+- ...+++-++. T Consensus 398 ~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~ 477 (548) T protein:vir:95 398 ARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAGLVF 477 (548) T ss_pred cCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCC Confidence 44332 211111222222 23455679999999999999999999988877788765421 0011111111 Q ss_pred ccccccccccc--ccccCCC--ccC-CCCCCCCCCCCccc---------CCCCcccccc--ccccCC Q lcl|Aclame:pro 407 NLGEIGEEPEP--EPAPAPP--AID-PPAEEPADDEEPDN---------AEGDPDEGET--EDDDDA 457 (457) Q Consensus 407 n~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~~ 457 (457) ...+....... ++..... ... .+....++.+|+-| +++=+++.++ -|..++ T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (548) T protein:vir:95 478 SSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARELVNRYGAGLPVPGPDFPNESNNGGADGQPS 544 (548) T ss_pred CCcccccccccccCCCCchhhhccccccccccchhHHhhccCCCCCcCCCCCCCcccccCCCCCCCC Confidence 11110000000 0000000 000 00000000001000 0000111111 111111 No 122 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.77 E-value=2.1e-19 Score=123.01 Aligned_cols=380 Identities=15% Similarity=0.136 Sum_probs=201.5 Q ss_pred Cchhhh-----hhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSA-----LFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |.+|+. +++-... + ..+. ...+..+..+ ...+.+++.++++|+.+|+.+.+..+.+.. T Consensus 1 ~~~~~~d~~~~~~~~~~~-------~---~~~~------~~~~~~~~~l-~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g 63 (427) T protein:vir:10 1 MKIVKHDGYNDIFNGGAD-------G---SPKP------FFMSDASYHV-GSFYNDNATAKRIVDVIPEEMVTAGFKMSG 63 (427) T ss_pred CCccccchHHHHhhcCCC-------C---cccC------ccccCchHHH-HHHHHcCchhhhhhccchHHhhcCCccccC Confidence 665531 1110000 0 0000 0111112222 134557888999999999999999988743 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-e----------cCCceeEEEEeccceeEEE Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-W----------AGPNIAGLDVLDPTKIHVH 144 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~-~----------~~g~~~~~~~l~p~~v~~~ 144 (457) ..+. ..+...+.+ ....+-+..++....++|.+++++. + ..|.+..+.++++..+++. T Consensus 64 ~~~~-------~~~~~~~~~----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~ 132 (427) T protein:vir:10 64 VKDE-------KEFKSLWDS----YKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVE 132 (427) T ss_pred ccHH-------HHHHHHHHH----hhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhccccc Confidence 2111 112222222 1234456666676788899998874 2 2467788888888887665 Q ss_pred EcCCCcccc--eeeEEEEEeeecccceeEEeccceEEEeccCC------ccCCccccchhH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 MVMVDGLRR--KVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM------LPGDFVGCSPIS-YARESIGLALAAQKYGAH 215 (457) Q Consensus 145 ~~~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~------~~~~~~G~s~~~-~~~~~i~~~~~~~~~~~~ 215 (457) ....+.... .-...|.+... .......+-++.|||+.... +.+..+|.|++. .+...|.....+...... T Consensus 133 ~~~~dp~s~~fg~P~~y~v~~~-~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~ 211 (427) T protein:vir:10 133 KRVTNARSPRYGEPEIYKVSPG-DNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQ 211 (427) T ss_pred ccccCccccccCcceEEEEecC-CCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHH Confidence 433221111 11112333221 22233567778899986432 345678999985 577888888888888888 Q ss_pred HHHccCCcceEEecCC---CC-CHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 216 FFRNGAMPGAVVEVPG---TM-SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIA 291 (457) Q Consensus 216 ~~~n~~~~~~~~~~~~---~~-~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia 291 (457) .+........ .+++ .+ +.+.....+.++......-++.+.+++.+++.+|+.++.+.++. .+.......+|| T Consensus 212 l~~k~~~~v~--k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl--~~~~~~~~~~ia 287 (427) T protein:vir:10 212 ILRRKQQAVW--KVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISGV--PEFLSSKMDRIV 287 (427) T ss_pred HHHHhccccc--cchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCCh--HHHHHHHHHHHH Confidence 7766544332 2221 11 11112223333333323334456677777778899888777664 467888889999 Q ss_pred HHhCCCHHHhccccccccccchHHHHHHHHHH-------HHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 292 RIFGVPPHLISDATNSTSWGSGLAEQNIAFTM-------FSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 292 ~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) ++.+||...|-....++.+ ++.+...+.|+. ..+.|.+..+-+. +... . .|.|.++++...+. T Consensus 288 aa~~IP~t~L~G~sp~Gln-stgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~----i~~s---~--~~~~~f~pL~~~s~ 357 (427) T protein:vir:10 288 SLSGIHEIIIKNKNVGGVS-ASQNTALETFYKLVDRKREEDYRPLLEFLLPF----IVDE---E--EWSIEFEPLSVPSK 357 (427) T ss_pred hhhCCCeeeeccCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcC---C--CcEEEeCCCCCCCH Confidence 9999999988444444432 223444555554 3345554443332 2211 1 25566667776666 Q ss_pred HHH-------HHHHHHHHhCCCcCHHHHHHHh----CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCC Q lcl|Aclame:pro 365 KER-------MELWSLGLQNGIYSIDEVRAAE----DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEP 433 (457) Q Consensus 365 ~~~-------~~~~~~~~~~g~~T~nE~R~~~----G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (457) +++ ++++++++++|+++++|+|+++ +...+.+ ++ -...+... ...+.++ T Consensus 358 kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~--~~-------~~~~e~~~------~~~e~~p----- 417 (427) T protein:vir:10 358 KEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKD--GN-------NINIREPE------ETTEPEP----- 417 (427) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCC--Cc-------cccccccc------hhcCCCC----- Confidence 554 4567778999999999999876 2222211 10 00000000 0000000 Q ss_pred CCCCCcccCCCCccccccccccC Q lcl|Aclame:pro 434 ADDEEPDNAEGDPDEGETEDDDD 456 (457) Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (457) -.++.+++++ T Consensus 418 -------------~~~e~~~d~~ 427 (427) T protein:vir:10 418 -------------GLGEKLEDEN 427 (427) T ss_pred -------------CCCCCCCCCC Confidence 0000000000 No 123 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.76 E-value=1.7e-19 Score=123.45 Aligned_cols=444 Identities=11% Similarity=0.011 Sum_probs=232.4 Q ss_pred Cchhhhhhcccccccc--cccc-ccccc---ccchhhhcccccccC-----------ccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL--DAAE-GRAWE---PYDPSIYNLGATASS-----------GERVTPHDALQVSAVFASVRLLS 63 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~--~~~~-~~~~~---~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~v~~~i~~ia 63 (457) |.-..+..+....... .... ...+. .....+..+.....+ ....+.+.+..++.+..+|+.+. T Consensus 2 ~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 81 (553) T protein:vir:63 2 TKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQR 81 (553) T ss_pred cchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 1111111111110000 0000 00000 000000000000000 01112333445899999999999 Q ss_pred HhhccCceEEEEeccCc-------e-e----eecCcchhhhccCC------CCCCCHHHHHHHHHHHHHHcCCeEEEEEe Q lcl|Aclame:pro 64 ETIATLPLSTYSKRGGT-------R-K----EIDTPEWLDFPNAE------PGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) Q Consensus 64 ~~ia~~p~~~~~~~~~~-------~-~----~~~~~~~~~l~~~p------n~~~~~~~f~~~~~~~~l~~G~~~~~i~~ 125 (457) ..+-+-.|++..+-+.. . . ......+..+...+ ...++++++...++..++..|++|+.+.. T Consensus 82 ~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~ 161 (553) T protein:vir:63 82 DSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAEW 161 (553) T ss_pred HhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEeee Confidence 99988888876543211 0 0 01111222332332 23457889999999999999999998765 Q ss_pred c--CCc--eeEEEEeccceeEEEEcCCCcccce-------eeE--EEEEeeeccc---------------ceeEEeccce Q lcl|Aclame:pro 126 A--GPN--IAGLDVLDPTKIHVHMVMVDGLRRK-------VFE--AYDIDADGNE---------------VLLGWFTPRD 177 (457) Q Consensus 126 ~--~g~--~~~~~~l~p~~v~~~~~~~~~~~~~-------~~~--~y~~~~~~~~---------------~~~~~~~~~e 177 (457) . .|. ...|..|+|+++.......++.... ... .|-+...... .....+++.+ T Consensus 162 ~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~~ 241 (553) T protein:vir:63 162 DRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRRQ 241 (553) T ss_pred ccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChhH Confidence 3 232 3467788888875444333221100 000 1111000000 0123577899 Q ss_pred EEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHH--------------- Q lcl|Aclame:pro 178 VLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAR--------------- 242 (457) Q Consensus 178 vih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~--------------- 242 (457) |||+..+...+...|+|++..+...+.......+..+...+-.+...++|+.+... +...+... T Consensus 242 vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 320 (553) T protein:vir:63 242 VIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPP-EFIHSQMSGGSPNADMVGIFGKY 320 (553) T ss_pred heecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCh-hhhhhhccccccccccccccccc Confidence 99999988889999999999999999999999999999888888889999866421 11111111 Q ss_pred -HHHHHHhc----cccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchH-- Q lcl|Aclame:pro 243 -EAWRAANS----GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGL-- 314 (457) Q Consensus 243 -~~~~~~~~----~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~-- 314 (457) ........ ..-+.|.+..|..|.+++.+..+....+|.++.+...+.||+.+|||.+.| |...+.|+|.+.. T Consensus 321 ~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~ 400 (553) T protein:vir:63 321 MDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGI 400 (553) T ss_pred ccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHH Confidence 00000011 112367889999999999998876677889999999999999999999987 6666666655421 Q ss_pred -------HHHHHHHHHHHHhhHHHH-HHHHHHhhhcC--ccccc-----------cceEEEecchhhhccHHHHHHHHHH Q lcl|Aclame:pro 315 -------AEQNIAFTMFSLRPWLER-IEAGFNRLLFA--ETADR-----------FRFVKFNLDEIKRGAPKERMELWSL 373 (457) Q Consensus 315 -------e~~~~~~~~~~l~P~~~~-ie~~l~~~ll~--~~~~~-----------~~~~~f~~~~~~~~d~~~~~~~~~~ 373 (457) +..+..|...-++|+... ++.++-...++ ..... ...+.+-.-.....|+.+.+++... T Consensus 401 ~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~ 480 (553) T protein:vir:63 401 AMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVM 480 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHH Confidence 122233444455664333 44444433332 11111 1112233334566799999999999 Q ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc-cccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 374 GLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPL-NLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 374 ~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) ++++|+.|.-|+-.+.|.++-+- .++.-.-. -+...+-..+..+.............+.++++.. ...+++| T Consensus 481 ~i~~G~~t~~~~~a~~G~D~~~v--~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e 553 (553) T protein:vir:63 481 RIDAGLSTYEREIARLGGDFRKS--FAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAA---QTSQQGE 553 (553) T ss_pred HHHcCCCCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCC---CcccccC Confidence 99999999999888889876421 11110000 0000000000000000000000000011111000 0001111 No 124 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.76 E-value=1.1e-17 Score=113.46 Aligned_cols=403 Identities=13% Similarity=0.048 Sum_probs=230.2 Q ss_pred Cchhhhhhccccccccccccccccc--ccchhhhccccccc---------CccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWE--PYDPSIYNLGATAS---------SGERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) =+|+...-+................ ..........+... .+..--.+..++.+.|.+|++.+...|.++ T Consensus 3 ~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~~~ 82 (491) T protein:vir:79 3 KGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVKAL 82 (491) T ss_pred CeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhCC Confidence 2344322111000000000000000 00011111111111 011112345668999999999999999999 Q ss_pred ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CC--ceeEEEEeccceeEEEE Q lcl|Aclame:pro 70 PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GP--NIAGLDVLDPTKIHVHM 145 (457) Q Consensus 70 p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g--~~~~~~~l~p~~v~~~~ 145 (457) +|.|....++.+ ....+..++.+. .+.+++..++ +.+++|.++.+++.. +| .+..+.+.|+.++.+.. T Consensus 83 ~w~i~~~~~~~~---~a~~i~e~l~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~ 154 (491) T protein:vir:79 83 EWGLDRGKAKSR---VAKSIADVFADL----DLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYDP 154 (491) T ss_pred CcEEecCCCCHH---HHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeecccceeecc Confidence 999976444321 223444555443 4666776654 578999999999754 23 34578888888776533 Q ss_pred cCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcce Q lcl|Aclame:pro 146 VMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGA 225 (457) Q Consensus 146 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~ 225 (457) .++.. +... .+......+++...|+.++....+.++|.|.+..+...........++...|.+..|+|-. T Consensus 155 --~~~l~------l~~~--~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~ 224 (491) T protein:vir:79 155 --ENQLR------FRSK--EHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPML 224 (491) T ss_pred --CCceE------Eeec--CCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeE Confidence 22221 1111 1122234567777777777666677899999999999999999999999999999999999 Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCC---hhHHHHHHHHHHHHHHHHHHhCCCHHHhc Q lcl|Aclame:pro 226 VVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS---PDEAQFLQTRQFQVPEIARIFGVPPHLIS 302 (457) Q Consensus 226 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s---~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg 302 (457) +.+.+...++++.+.+.+.+.+... ...++++.|++++-+..+ ..-..|.+..++..++|+.++ || T Consensus 225 igky~~~a~~~ek~~l~~al~~~~~-----~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LG 293 (491) T protein:vir:79 225 VGKHPRSASDAETNLLLDRLEDMVQ-----DAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------LG 293 (491) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhc-----CeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------hh Confidence 9999988899888888877776532 235777777776665432 223347777888888888764 44 Q ss_pred cc--cccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc----ccceEEEecchhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 303 DA--TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD----RFRFVKFNLDEIKRGAPKERMELWSLGLQ 376 (457) Q Consensus 303 ~~--~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~----~~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 376 (457) .. .+++.+++. .+.+.......+.-.+..|+..||+ |+.+.-. .....+|.+.... .+.+..++..+++++ T Consensus 294 qtlTt~~~gs~a~-~~vh~~v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~e-e~~~~~a~~~~~L~~ 370 (491) T protein:vir:79 294 QNQTTEATSTRAS-AQAGLEVTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQE-QVDEIQAGRDEKLTR 370 (491) T ss_pred hhhccCcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCcC-chhHHHHHHHHHHHh Confidence 22 222223332 3445566778888899999999986 6543321 1123445554432 233567889999999 Q ss_pred CCC-cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccc--c Q lcl|Aclame:pro 377 NGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETE--D 453 (457) Q Consensus 377 ~g~-~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 453 (457) .|+ ++..++|+.+|+|+-.. ++....+. .+...+.+ .......+.. +..+...+ . T Consensus 371 ~G~~i~~~~~~e~~Gip~~~~--~e~~~~~~-----------~~~~~~~~------~~~~~~~~~~---~~~d~~~~~~~ 428 (491) T protein:vir:79 371 AGARFTPAYFKRAYNLQDGDL--DERPLPVS-----------AVDAVGAA------SFAEFEAPDQ---DALDAALNALS 428 (491) T ss_pred CCCccCHHHHHHHhCCCCCCC--CccccCcC-----------cccccccc------cccccCCCCC---cchHHHHHHHH Confidence 987 78899999999986443 22221110 00000000 0000000000 00000000 0 Q ss_pred ccCC Q lcl|Aclame:pro 454 DDDA 457 (457) Q Consensus 454 ~~~~ 457 (457) +.+. T Consensus 429 ~~~~ 432 (491) T protein:vir:79 429 ARDL 432 (491) T ss_pred HHHH Confidence 0000 No 125 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.75 E-value=3.3e-19 Score=121.91 Aligned_cols=431 Identities=11% Similarity=0.070 Sum_probs=225.9 Q ss_pred Cchhhhhhcccccccccccccccccc--cchhhhcccccccC---------ccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEP--YDPSIYNLGATASS---------GERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) |+|+++-+--...........+.+.. .......+..++.. ....+.+.+..++.+..+|+.+...+-+- T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG~ 80 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVGN 80 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC Confidence 99997622111110000000000000 00000000111000 01112333445899999999999999777 Q ss_pred ceEEEEeccCceeeecCc-chhhhccCC--CCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---C--ceeEEEEecccee Q lcl|Aclame:pro 70 PLSTYSKRGGTRKEIDTP-EWLDFPNAE--PGGMGRIDILSQTVLSLLLQGNAFLAVRWAG---P--NIAGLDVLDPTKI 141 (457) Q Consensus 70 p~~~~~~~~~~~~~~~~~-~~~~l~~~p--n~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~---g--~~~~~~~l~p~~v 141 (457) .|+...+.++..-...-. .+..+..++ ...+++.++.+.++..++..|++|+.++... | -+..+..|+|+++ T Consensus 81 Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqliepd~l 160 (495) T protein:vir:10 81 GLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDML 160 (495) T ss_pred CcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEechhhc Confidence 777665443322111111 222222222 2346888999999999999999999876431 2 2467888888887 Q ss_pred EEEEcC---CC------cc-----cceeeEEE-EEeee-----cccceeEEeccceEEEeccCCccCCccccchhHHHHH Q lcl|Aclame:pro 142 HVHMVM---VD------GL-----RRKVFEAY-DIDAD-----GNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARE 201 (457) Q Consensus 142 ~~~~~~---~~------~~-----~~~~~~~y-~~~~~-----~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~ 201 (457) ...... .+ |+ .....+++ ..... ........+++++|||+.. ...+...|+|.+..+ . T Consensus 161 ~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~-~r~gQ~RGis~la~i-~ 238 (495) T protein:vir:10 161 ASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTV-LTVRSDAGAPWFQLL-L 238 (495) T ss_pred CCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccc-cCCCcccCcchhHHH-H Confidence 532111 11 11 00111111 11111 0122346689999999964 455888999977654 4 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCCCCCH--HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHH Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSE--EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQF 279 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~ 279 (457) .+.......+......+-.+...++|+.+..-.. +....-...-.......-..|.+..|..|.+++.++.+..-..| T Consensus 239 ~l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~ 318 (495) T protein:vir:10 239 RLNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTY 318 (495) T ss_pred HHHHhhHHHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCH Confidence 5777777777777777778888888876532110 00000000000000111245789999999999999877666778 Q ss_pred HHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHH--HHHHH--------HHHHHHhhHHH-HHHHHHHhhhcC--cc Q lcl|Aclame:pro 280 LQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLA--EQNIA--------FTMFSLRPWLE-RIEAGFNRLLFA--ET 345 (457) Q Consensus 280 ~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e--~~~~~--------~~~~~l~P~~~-~ie~~l~~~ll~--~~ 345 (457) .++.+.+.+.||+.+|||.+.| |...+.|+|..... +..+. ++...+.|+.. .++.++-...++ .+ T Consensus 319 ~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~ 398 (495) T protein:vir:10 319 EPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDY 398 (495) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc Confidence 8999999999999999999988 66666666543321 22222 23334445333 345454443332 21 Q ss_pred cc-ccce--EEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee------ecccccccccccc Q lcl|Aclame:pro 346 AD-RFRF--VKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYR------VPLNLGEIGEEPE 416 (457) Q Consensus 346 ~~-~~~~--~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~------~~~n~~~~~~~~~ 416 (457) .. ...+ +.+-.-.....|+.+.+++...++++|++|+-|+-.+.|+++-+- .++.- .-+++. .+. T Consensus 399 ~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v--~~q~a~e~~~~~~~Gl~-~~~--- 472 (495) T protein:vir:10 399 LQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEEL--FDMISDANQLIDEYDLR-LDS--- 472 (495) T ss_pred hhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH--HHHHHHHHHHHHHcCCC-CCC--- Confidence 11 1112 223334456779999999999999999999999888889876421 11110 000000 000 Q ss_pred cccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 417 PEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) .+...+ ..+..+++.....+++| T Consensus 473 -~p~~~~--------~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 473 -DPRYVN--------GSGAEQKSVMEAALNNE 495 (495) T ss_pred -CCCcCC--------CccCCCCCCCCCCCCCC Confidence 000000 00000111111111111 No 126 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.75 E-value=6.4e-19 Score=120.34 Aligned_cols=439 Identities=12% Similarity=0.016 Sum_probs=232.7 Q ss_pred Cchhhhhhccccccccccccccc--ccccchhhhccccccc-----------CccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRA--WEPYDPSIYNLGATAS-----------SGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) |.+-. +.+-...++........ -.........+..... .....+.+.+..++.+.++|+.+...+- T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 79 (530) T protein:vir:38 1 MKIPS-LVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIV 79 (530) T ss_pred Cccce-eecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 44332 11111000000000000 0000000000000000 0111233344568999999999999998 Q ss_pred cCceEEEEeccCc------ee-----eecCcchhhhccCCC------CCCCHHHHHHHHHHHHHHcCCeEEEEEecC--C Q lcl|Aclame:pro 68 TLPLSTYSKRGGT------RK-----EIDTPEWLDFPNAEP------GGMGRIDILSQTVLSLLLQGNAFLAVRWAG--P 128 (457) Q Consensus 68 ~~p~~~~~~~~~~------~~-----~~~~~~~~~l~~~pn------~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g 128 (457) +-.|++..+-+.. .. ......+..+...++ ..+++.++.+.++..++..|++|+.+++.. | T Consensus 80 G~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g 159 (530) T protein:vir:38 80 GSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDST 159 (530) T ss_pred CCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCC Confidence 8888877643211 00 011112223333333 346889999999999999999999987643 3 Q ss_pred c--eeEEEEeccceeEEEEcCCCcc------c-----ceeeEE-EEEee-ecccc------eeEEeccceEEEeccCCcc Q lcl|Aclame:pro 129 N--IAGLDVLDPTKIHVHMVMVDGL------R-----RKVFEA-YDIDA-DGNEV------LLGWFTPRDVLHIPGMMLP 187 (457) Q Consensus 129 ~--~~~~~~l~p~~v~~~~~~~~~~------~-----~~~~~~-y~~~~-~~~~~------~~~~~~~~evih~~~~~~~ 187 (457) . ...+..|+|+.+.......++. . ....++ +.... ..... ....++..+|||+..+... T Consensus 160 ~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~ 239 (530) T protein:vir:38 160 RLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMED 239 (530) T ss_pred CccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCC Confidence 2 3567888888775332222111 0 011111 11100 00001 1234566799999998888 Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC-----------HHHHHHHHHHHH------HHhc Q lcl|Aclame:pro 188 GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS-----------EEGLARAREAWR------AANS 250 (457) Q Consensus 188 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-----------~e~~~~~~~~~~------~~~~ 250 (457) +...|+|.+..+...+.......++.....+-.+...++|+.+.... .++...+..... +... T Consensus 240 gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (530) T protein:vir:38 240 GQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAP 319 (530) T ss_pred CcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccc Confidence 99999999999999999999999999888888888888888654211 011111111100 0000 Q ss_pred cccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchH---------HHHHHH Q lcl|Aclame:pro 251 GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGL---------AEQNIA 320 (457) Q Consensus 251 ~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~---------e~~~~~ 320 (457) -.-..|.+..|..|.+++.++.+....+|.++.+.+.+.||+.+|||.+.| |+..+.|++.+.. +..+.. T Consensus 320 ~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~ 399 (530) T protein:vir:38 320 VRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKF 399 (530) T ss_pred eeccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH Confidence 112467889999999999998776777889999999999999999999988 6655666654321 122223 Q ss_pred HHHHHHhhH-HHHHHHHHHhhhcCccc-------c-c--cceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 321 FTMFSLRPW-LERIEAGFNRLLFAETA-------D-R--FRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE 389 (457) Q Consensus 321 ~~~~~l~P~-~~~ie~~l~~~ll~~~~-------~-~--~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~ 389 (457) +...-+.|+ ...++.++....++-.. . . ...+.+-.-.....|+.+.+++...++++|+.|.-++-.+. T Consensus 400 ~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~ 479 (530) T protein:vir:38 400 VASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR 479 (530) T ss_pred HHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc Confidence 333333443 33456665555443110 0 1 11233434456678999999999999999999999988888 Q ss_pred CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 390 DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 390 G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) |.++-+- .++.-.-. ..+....-.-+ .........+ ..++++.+.+.++-| T Consensus 480 G~D~~~v--~~q~a~e~--~~~~~~Gl~~~--~~~~~~~~~~-----------~~~~~~~~~d~~~~a 530 (530) T protein:vir:38 480 GDDYQEI--FAQQVRES--MERRAAGLNPP--AWAAAAFEAG-----------VKKSNEEEQDGARAA 530 (530) T ss_pred CCCHHHH--HHHHHHHH--HHHHHcCCCCC--CCcccccCCC-----------CCCCCCCCCCCCCCC Confidence 9876421 11110000 00000000000 0000000000 000000011111111 No 127 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.74 E-value=1.1e-17 Score=113.55 Aligned_cols=404 Identities=13% Similarity=0.057 Sum_probs=228.5 Q ss_pred Cchhhhhhccccc-cccccccccccc--ccchhhhcccccccC---------ccccCHHHHhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MGFWSALFGRGHS-PALDAAEGRAWE--PYDPSIYNLGATASS---------GERVTPHDALQVSAVFASVRLLSETIAT 68 (457) Q Consensus 1 Mg~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 68 (457) =+|+..- +++-. ............ ......+..+..... +..--.+..++.+.|.+|++.+...|.+ T Consensus 3 ~~i~~~~-g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~~ 81 (491) T protein:vir:10 3 KGLWVSP-TEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVKA 81 (491) T ss_pred CceeCCC-CCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHHhhChHHHHHHHHHHHHHhC Confidence 2333211 11100 000000000000 000000000000000 1111234566799999999999999999 Q ss_pred CceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CC--ceeEEEEeccceeEEE Q lcl|Aclame:pro 69 LPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GP--NIAGLDVLDPTKIHVH 144 (457) Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g--~~~~~~~l~p~~v~~~ 144 (457) ++|.|....++.+ ....+..++.+. .+.+++..++ +.+++|.++.+++.. +| .+..+.+.|+.++.+. T Consensus 82 ~~w~i~~~~~~~~---~~e~v~e~l~~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 153 (491) T protein:vir:10 82 LEWGLDRGKAKSR---VAKSIADVFADL----DLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYD 153 (491) T ss_pred CCcEEecCCCCHH---HHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceeec Confidence 9999976443321 223444555443 4677887765 678999999999764 23 3557788888877653 Q ss_pred EcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcc Q lcl|Aclame:pro 145 MVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPG 224 (457) Q Consensus 145 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~ 224 (457) . .+... |. ...+......+++...|+.++....+.++|.|.+..+....-......++...|....|+|- T Consensus 154 ~--~~~l~------~~--~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~ 223 (491) T protein:vir:10 154 P--ENQLR------FR--SKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPM 223 (491) T ss_pred c--CCceE------Ee--cCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCe Confidence 3 22221 11 11122223456667666666666667789999999999999999999999999999999999 Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccC--Ch-hHHHHHHHHHHHHHHHHHHhCCCHHHh Q lcl|Aclame:pro 225 AVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAM--SP-DEAQFLQTRQFQVPEIARIFGVPPHLI 301 (457) Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~--s~-~d~~~~e~~~~~~~~Ia~~fgvpp~~l 301 (457) .+.+.+...++++.+.+.+.+.+.-. ...++++.|++++-+.. +. .-..|.+..++..++|+.+ +| T Consensus 224 ~igky~~~a~~~ek~~l~~al~~~~~-----~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~------iL 292 (491) T protein:vir:10 224 LVGKHPRSASDGEKNLLLDCLEDMVQ-----DAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIA------LL 292 (491) T ss_pred EEEecCCCCCHHHHHHHHHHHHHHhc-----CcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHH------Hh Confidence 99999988899988888887776532 24577777877766643 22 2234777788888888876 44 Q ss_pred cccc--ccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc----ccceEEEecchhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 302 SDAT--NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD----RFRFVKFNLDEIKRGAPKERMELWSLGL 375 (457) Q Consensus 302 g~~~--~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~----~~~~~~f~~~~~~~~d~~~~~~~~~~~~ 375 (457) |... +++.+++ ..+.+.......+.-.++.|+..||+ |+.+.-. ...+.+|.+... ..+.+..++.+++++ T Consensus 293 GqtlTt~~~gs~a-~~~vh~~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~-~e~~~~~a~~~~~L~ 369 (491) T protein:vir:10 293 GQNQTTEATSTRA-SAQAGLEVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQ-EQVDEIQAGRDQKLT 369 (491) T ss_pred hhhcccCcccchh-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCc-CchhHHHHHHHHHHH Confidence 4322 2222232 23445566778888889999999985 6543221 112334444433 234477889999999 Q ss_pred hCCC-cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 376 QNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 376 ~~g~-~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) +.|+ ++..++|+.+|+|+-.. ++... | .. .+...+. ........+...+-+. ......+ T Consensus 370 ~~G~~i~~~~i~e~~Gip~~~~--~~~~~-~-------~~---~~~~~~~------~~~~~~~~~~~~~~d~-~~~~~~~ 429 (491) T protein:vir:10 370 QAGARFTPAYFKRAYNLQDGDL--DERPL-P-------VS---AVDTVGA------ASFAEFEAPDQDALDA-ALNTLSA 429 (491) T ss_pred hCCCcCCHHHHHHHhCCCCCCc--Ccccc-c-------cC---CCCCccc------ccccccCCCCCCchHH-HHHHHHH Confidence 9998 78899999999986433 22111 0 00 0000000 0000000000000000 0000000 Q ss_pred cCC Q lcl|Aclame:pro 455 DDA 457 (457) Q Consensus 455 ~~~ 457 (457) ++. T Consensus 430 ~~~ 432 (491) T protein:vir:10 430 RDL 432 (491) T ss_pred HHH Confidence 000 No 128 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.74 E-value=1.1e-17 Score=113.52 Aligned_cols=408 Identities=12% Similarity=0.060 Sum_probs=217.4 Q ss_pred hhcccccccccccccccccccc-h---------hhhcccccc-c--------CccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 7 LFGRGHSPALDAAEGRAWEPYD-P---------SIYNLGATA-S--------SGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~-~--------~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) +-+|..+++.-........+.. + ......+.. . .+..--.+..++.+.|.+|++.+...|. T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~ 80 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFGRIR 80 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHHHHh Confidence 2233222211000000000000 0 000011100 0 0011123456678999999999999999 Q ss_pred cCceEEEEeccCceeeecCcchhhhccCCCC---CCCHHHHHHHHHHHHHHcCCeEEEEEec---CCc--eeEEEEeccc Q lcl|Aclame:pro 68 TLPLSTYSKRGGTRKEIDTPEWLDFPNAEPG---GMGRIDILSQTVLSLLLQGNAFLAVRWA---GPN--IAGLDVLDPT 139 (457) Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~---~~~~~~f~~~~~~~~l~~G~~~~~i~~~---~g~--~~~~~~l~p~ 139 (457) +++|.|....++.........+...+..+.. ..++.+++.. +.+.+++|.++.+++.. +|. +..+.+.++. T Consensus 81 ~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~-~lda~~~G~s~~Eivw~~~~~g~~~~~~l~~r~~~ 159 (448) T protein:vir:79 81 SAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAI-YENAYIYGMAAGEIVLTLGADGKLILDKIVPIHPF 159 (448) T ss_pred cCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHH-HHHhhhhcceeEEEEeeecCCCceecccccccCCc Confidence 9999997543332222222233344443332 2345566655 44578999999999763 233 2344455554 Q ss_pred eeE-EEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 KIH-VHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFR 218 (457) Q Consensus 140 ~v~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 218 (457) .+. +..+.+++........ .............++..-++|..+. ..+.++|.+.+..+...........++...|.. T Consensus 160 ~~~~f~~~~d~~l~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E 237 (448) T protein:vir:79 160 NIDEVLYDEEGGPKALKLSG-EVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILLINHGLE 237 (448) T ss_pred cccceeeecCCceEEeecCC-cccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 322 2222233221111000 0000000111234567778887654 456789999999999999999999999999999 Q ss_pred ccCCcceEEecCCCCC--HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 219 NGAMPGAVVEVPGTMS--EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGV 296 (457) Q Consensus 219 n~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgv 296 (457) ..|.|--+.+.+...+ +++.+.+.+...+...+ .++ .++++.|++++-++....-..+.++.++..++|+.+. T Consensus 238 ~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g-~~a--~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~i-- 312 (448) T protein:vir:79 238 RFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQK-PRH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARAL-- 312 (448) T ss_pred HcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcC-Cce--EEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHH-- Confidence 9999998888876544 45555555544443222 223 4678888888777655544557778888889988764 Q ss_pred CHHHhcccc---ccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccc-----cccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 297 PPHLISDAT---NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETA-----DRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 297 pp~~lg~~~---~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~-----~~~~~~~f~~~~~~~~d~~~~~ 368 (457) ||... .++.+++...........+.+.-.++.|+..||+.|+++.- ....+-+|.++.....|.+..+ T Consensus 313 ----LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~e~~Dl~~~a 388 (448) T protein:vir:79 313 ----GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEERNDFSAAA 388 (448) T ss_pred ----hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEecCCChHHHHHHH Confidence 33211 11112222222334556777888999999999998887542 1112223444455667888899 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCC-CCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc-ccCCC Q lcl|Aclame:pro 369 ELWSLGLQNGIYSIDEVRAAEDMT-PLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP-DNAEG 444 (457) Q Consensus 369 ~~~~~~~~~g~~T~nE~R~~~G~~-p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 444 (457) +.+.+++..+-...+-+|+.+|+| |.++ +....+ ...+.......++++.... +.... T Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~p~~~~~---~~~~a~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (448) T protein:vir:79 389 NLMGMLINAVKDSEDIPTELKALIDALPS---KMRRAL---------------GVVDEVREAVRQPADSRYLYTRRRR 448 (448) T ss_pred HHhhhhhccchhhHHHHHHhhcCCCCCCC---cccccc---------------CCCCcccccccCCccccchhhcccC Confidence 999999877654444467888887 3332 111000 0000000111111111100 00000 No 129 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.73 E-value=1.2e-18 Score=118.93 Aligned_cols=440 Identities=13% Similarity=0.053 Sum_probs=232.5 Q ss_pred Cchhhhhhcccccccc---------cccccc---cccccchhhh-cccccccCccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL---------DAAEGR---AWEPYDPSIY-NLGATASSGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~---------~~~~~~---~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) |=-+..+.+.....+. ....++ .|.+...+.. ............+.+.+..++.+..+|+.+...+- T Consensus 3 ~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 82 (533) T protein:vir:34 3 TPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDHIV 82 (533) T ss_pred CchhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 2212222111000000 000000 0000000000 00000000011123334468999999999999997 Q ss_pred cCceEEEEeccC-------cee----eecCcchhhhccCCC------CCCCHHHHHHHHHHHHHHcCCeEEEEEecC--C Q lcl|Aclame:pro 68 TLPLSTYSKRGG-------TRK----EIDTPEWLDFPNAEP------GGMGRIDILSQTVLSLLLQGNAFLAVRWAG--P 128 (457) Q Consensus 68 ~~p~~~~~~~~~-------~~~----~~~~~~~~~l~~~pn------~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g 128 (457) +-.|++..+-+. ... ......+..+...++ ..+++.++...++..++..|++|+.+.... | T Consensus 83 G~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~g 162 (533) T protein:vir:34 83 GSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSSS 162 (533) T ss_pred CCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccCCC Confidence 778877654221 000 011112223323332 345788999999999999999999986542 3 Q ss_pred c--eeEEEEeccceeEEEEcCCCcc------cc-ee--eEEEEEeeec-c---cc------eeEEeccceEEEeccCCcc Q lcl|Aclame:pro 129 N--IAGLDVLDPTKIHVHMVMVDGL------RR-KV--FEAYDIDADG-N---EV------LLGWFTPRDVLHIPGMMLP 187 (457) Q Consensus 129 ~--~~~~~~l~p~~v~~~~~~~~~~------~~-~~--~~~y~~~~~~-~---~~------~~~~~~~~evih~~~~~~~ 187 (457) . ...+..|+|+.+....+..++. .. .. ...|.+.... + .. ....++..+|||+..+... T Consensus 163 ~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~r~ 242 (533) T protein:vir:34 163 RLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPVED 242 (533) T ss_pred CccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccccCC Confidence 2 4567888888775433222211 00 00 0011111000 0 00 1233567899999998888 Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC-----------HHHHHHHHH---HHHHHhcc-- Q lcl|Aclame:pro 188 GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS-----------EEGLARARE---AWRAANSG-- 251 (457) Q Consensus 188 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-----------~e~~~~~~~---~~~~~~~~-- 251 (457) +...|+|.+..+...+.......+..+...+-.+...++|+.+.... .+..+.+.. .....+.+ T Consensus 243 gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (533) T protein:vir:34 243 GQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAP 322 (533) T ss_pred CcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcce Confidence 99999999999999999999999999988888888899988653211 111111111 11111111 Q ss_pred -ccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchH---------HHHHHH Q lcl|Aclame:pro 252 -VDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGL---------AEQNIA 320 (457) Q Consensus 252 -~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~---------e~~~~~ 320 (457) .-..|.+..|..|.+++.++.+....+|.++.+.+.+.||+.+|||.+.| |+..+.|+|.... +..+.. T Consensus 323 ~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~ 402 (533) T protein:vir:34 323 VRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKF 402 (533) T ss_pred eeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHH Confidence 12357888999999999988877777889999999999999999999988 6555666655321 122233 Q ss_pred HHHHHHhhHHH-HHHHHHHhhhcCcc-------cc-cc--ceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 321 FTMFSLRPWLE-RIEAGFNRLLFAET-------AD-RF--RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE 389 (457) Q Consensus 321 ~~~~~l~P~~~-~ie~~l~~~ll~~~-------~~-~~--~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~ 389 (457) |....+.|+.. .++.++....++-. .. .. ..+.+-.-.....|+.+.+++...++++|+.|.-|+-.+. T Consensus 403 ~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~ 482 (533) T protein:vir:34 403 VASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR 482 (533) T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc Confidence 44444555444 34555544444311 10 11 1234444556778999999999999999999999988888 Q ss_pred CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 390 DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 390 G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) |.++-+- .++.-.- .....+.. -....++......... +.+++..+++.-| T Consensus 483 G~D~~ev--~~q~a~e-----~~~~~~~g---l~~~~~~~~~~~s~~~-------~~~~~~~~~~~~~ 533 (533) T protein:vir:34 483 GDDYQEI--FAQQVRE-----TMERRAAG---LKPPAWAAAAFESGLR-------QSTEEEKSDSRAA 533 (533) T ss_pred CCCHHHH--HHHHHHH-----HHHHHhcC---CCCCCCCCcCccCCCC-------CCCCCCcccCCCC Confidence 9876421 1111100 00000000 0000000000000000 0000000111111 No 130 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.72 E-value=3.4e-17 Score=110.90 Aligned_cols=409 Identities=12% Similarity=0.058 Sum_probs=228.0 Q ss_pred Cchhhhhhccccccccccccccccc-----ccch-hhhccc-----ccccCccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWE-----PYDP-SIYNLG-----ATASSGERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~-----~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) +. +..+ .+.....+. ...+.+. ...+ .+.... +.......+-.+...+.+.|.+|++.+...|.++ T Consensus 12 ~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~Rk~av~~~ 88 (512) T protein:vir:19 12 FD-FDDE-MQSRSDELA-MVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSKRRLAIQAL 88 (512) T ss_pred cc-cccc-cccccchhc-ccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHhCC Confidence 11 0001 011111000 0000000 0000 000000 0001111112233347899999999999999999 Q ss_pred ceEEEEeccCc-eeeecCcchhhhcc-CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--C--CceeEEEEeccceeEE Q lcl|Aclame:pro 70 PLSTYSKRGGT-RKEIDTPEWLDFPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--G--PNIAGLDVLDPTKIHV 143 (457) Q Consensus 70 p~~~~~~~~~~-~~~~~~~~~~~l~~-~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~--g~~~~~~~l~p~~v~~ 143 (457) +|.|....+.. ........+..++. .+ .+.+++..++ +.+++|-++.+++.. + ..+..+.+.+|..+.+ T Consensus 89 ~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~f~~ 163 (512) T protein:vir:19 89 EWRIAPARDASAQEKKDADMLNEYLHDAA----WFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHHRDPALFCA 163 (512) T ss_pred CceEecCCCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeeeecccccee Confidence 99997644322 11111222223332 22 2556666654 578899999999763 2 4566778888887765 Q ss_pred EEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 144 HMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMP 223 (457) Q Consensus 144 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~ 223 (457) ..+....++ +. ........+++...|..++....+.++|.+.+..+...........++...|....|.| T Consensus 164 ~~~~~~~lr------~~----~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (512) T protein:vir:19 164 NPDNLNELR------LR----DASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLP 233 (512) T ss_pred ccCCCcEEE------ec----CCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 433222111 11 11112234555555555555556788999999999999999999999999999999999 Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhc Q lcl|Aclame:pro 224 GAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLIS 302 (457) Q Consensus 224 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg 302 (457) -.+.+.+...++++.+.+.+.+.+.-+ ...++++.|++++-+..+ .....|.++.++..++|+.+ +|| T Consensus 234 ~~igky~~~a~~~ek~~L~~al~~~~~-----~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~------iLG 302 (512) T protein:vir:19 234 MRVGKYPTGSTNREKATLMQAVMDIGR-----RAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKA------ILG 302 (512) T ss_pred eeEEecCCCCCHHHHHHHHHHHHHHhh-----CcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHH------Hhh Confidence 999999988888888888887776532 346778888877666543 33345788889999999987 354 Q ss_pred cccc----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccccc--------ceEEEecchhhhccHHHHHHH Q lcl|Aclame:pro 303 DATN----STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRF--------RFVKFNLDEIKRGAPKERMEL 370 (457) Q Consensus 303 ~~~~----~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~--------~~~~f~~~~~~~~d~~~~~~~ 370 (457) .... ++.+++ ..+.+.......+...++.|+..||+.|+.+.-.-+ .+-+|.++.....|.+..++. T Consensus 303 qtlTs~~g~~Gs~a-~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~~ 381 (512) T protein:vir:19 303 GTLTTEAGDKGARS-LGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEAGDITALSDA 381 (512) T ss_pred hhhcccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCChhhHHHHHHH Confidence 3221 111222 335566778888999999999999998887542211 122344444557788888888 Q ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 371 WSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 371 ~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) +.++..+--++..++|+.+|+|.-.+ ++....+. + ...... .. .......+. .+...+ .+. . T Consensus 382 ~~~l~~G~~i~~~~i~e~~Gip~~~~--~e~~~~~~---~----~~~~~~-~~----~~~~~~~~~-~~~~~~--~d~-~ 443 (512) T protein:vir:19 382 IPKLAAGMRIPVSWIQEKLHIPQPVG--DEAVFTIQ---P----VVPDNG-SQ----KEAALSAED-IPQEDD--IDR-M 443 (512) T ss_pred HHHHhcCCCCCHHHHHHHhCCCCCCC--ccccccCC---C----cccccc-cc----ccccccccC-CCchhh--HhH-H Confidence 88876433478899999999974332 22222110 0 000000 00 000000000 000000 000 0 Q ss_pred cccccCC Q lcl|Aclame:pro 451 TEDDDDA 457 (457) Q Consensus 451 ~~~~~~~ 457 (457) ....++. T Consensus 444 ~~~~~~~ 450 (512) T protein:vir:19 444 GVSPEDW 450 (512) T ss_pred hhhHHHH Confidence 0000001 No 131 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.71 E-value=4.9e-17 Score=110.00 Aligned_cols=402 Identities=12% Similarity=0.068 Sum_probs=215.4 Q ss_pred Cchhhhhhcccccccccccccccccccc----------hhhhcccccc---------cCccccCHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYD----------PSIYNLGATA---------SSGERVTPHDALQVSAVFASVRL 61 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---------~~~~~v~~~~~~~~~~v~~~i~~ 61 (457) |. +|..+++..........+.. .......+.. ..+..--++..++.+.|.+|++. T Consensus 1 m~------kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~ 74 (448) T protein:vir:77 1 MA------KRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNY 74 (448) T ss_pred CC------CCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHH Confidence 33 33322221100000000000 0000000100 01111123456678999999999 Q ss_pred HHHhhccCceEEEEeccCceeeecCcchhhhccCCC---CCCCHHHHHHHHHHHHHHcCCeEEEEEec---CCc--eeEE Q lcl|Aclame:pro 62 LSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEP---GGMGRIDILSQTVLSLLLQGNAFLAVRWA---GPN--IAGL 133 (457) Q Consensus 62 ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn---~~~~~~~f~~~~~~~~l~~G~~~~~i~~~---~g~--~~~~ 133 (457) +...|.+++|.|....++.........+...+..+. ...++.+++..+ .+.+++|.++.+++.. +|. +..+ T Consensus 75 Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~-lda~~~G~s~~Eivw~~~~dg~~~~~~l 153 (448) T protein:vir:77 75 IFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADGKLILDKI 153 (448) T ss_pred HHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHH-HHhhhhcceeEEEEEeecCCCceeeccc Confidence 999999999999754333222222223333333322 234577777776 5789999999999764 233 2344 Q ss_pred EEeccceeE-EEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 DVLDPTKIH-VHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKY 212 (457) Q Consensus 134 ~~l~p~~v~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~ 212 (457) .+.++..+. +..+.+++........ .............++..-++|..+. ..+.++|.|.+..+....-......++ T Consensus 154 ~~r~~~~~~~f~~~~~~~l~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~ 231 (448) T protein:vir:77 154 VPIHPFNIDEVLYDEEGGPKALKLSG-EVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILL 231 (448) T ss_pred cccCCCccceeeeecCCceEEEecCC-cccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhHHH Confidence 455554322 2222233221111000 0000001111234577788888664 456789999999999999999999999 Q ss_pred HHHHHHccCCcceEEecCCCCC--HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMS--EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEI 290 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~I 290 (457) ...|.+..|.|--+.+.+...+ +++.+.+.+...+...+ .++ .++++.|++++-++.+.....+.+..++..++| T Consensus 232 w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g-~~a--~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~I 308 (448) T protein:vir:77 232 INHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQK-PRH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGI 308 (448) T ss_pred HHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcC-Cce--EEEecCCceEEEEecCCCccCHHHHHHHHHHHH Confidence 9999999999999999876544 45555555555443222 223 467888888777765544455677888888999 Q ss_pred HHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcc-----ccc--cceEEEecchhhhcc Q lcl|Aclame:pro 291 ARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAET-----ADR--FRFVKFNLDEIKRGA 363 (457) Q Consensus 291 a~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~-----~~~--~~~~~f~~~~~~~~d 363 (457) +.+..-.---.+ .++.+++...+.........+.-.++.|+..||+.|+++. +.. ..++.|+ .....| T Consensus 309 sk~iLGqtlTs~---~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~--~~e~eD 383 (448) T protein:vir:77 309 ARALGIDFNTVQ---LNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFE--MEERND 383 (448) T ss_pred HHHHhccccccc---cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEec--CCChhh Confidence 887532211111 1112222222333346677788899999999999888754 211 2244554 445678 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 364 PKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 364 ~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) .+..++.+.+++ +-+|+.+|+|.-.++ + ..+ .+. ...+.... .++ T Consensus 384 l~~~a~~~~~l~-------~~~~~~~~ip~~~~~-~---~~~------------~~~----~~~~~~~~--~~~------ 428 (448) T protein:vir:77 384 FSAAANLMGMLI-------NAVKDSEDIPTELKA-L---IDA------------LPS----KMRRALGV--VDE------ 428 (448) T ss_pred HHHHHHHhHHHH-------HHHHHHhcCCccCCc-C---CCC------------Cch----hcccccCC--CCC------ Confidence 888888888876 457999999742110 0 000 000 00000000 000 Q ss_pred CCccccccccccCC Q lcl|Aclame:pro 444 GDPDEGETEDDDDA 457 (457) Q Consensus 444 ~~~~~~~~~~~~~~ 457 (457) +.....+..++ T Consensus 429 ---~~~~~~~~~~~ 439 (448) T protein:vir:77 429 ---VREAVRQPADS 439 (448) T ss_pred ---CCchhhcchhh Confidence 00000011111 No 132 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.71 E-value=2.6e-17 Score=111.54 Aligned_cols=383 Identities=10% Similarity=-0.009 Sum_probs=219.5 Q ss_pred Cchhhhhhccccc----ccccccccccccc----cchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFWSALFGRGHS----PALDAAEGRAWEP----YDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~~~l~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) |+|==+. .+.. .......+..... .++..-..++.......+-.+...+.+.|.+|++.+..+|.+++|. T Consensus 1 ~~~~~~~--~p~~~~~~~~~~~~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~ 78 (446) T protein:vir:98 1 MNMEVRN--APTPAIRRRTIYAMEHLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGP 78 (446) T ss_pred CcccccC--CCchhhhhhhhhccccchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCce Confidence 5542110 0000 0000011111100 0111101111111111222232335899999999999999999999 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--Cc--ee----EEEEeccceeEEE Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PN--IA----GLDVLDPTKIHVH 144 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~--~~----~~~~l~p~~v~~~ 144 (457) |....+. ....+..++.... .++....+.+.+.+|.++.+++... |. +. .+....|..+... T Consensus 79 V~p~~~~-----~a~~v~~~l~~~~-----~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~ 148 (446) T protein:vir:98 79 YQHGDKR-----IKKFIDDQLRNRA-----KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLI 148 (446) T ss_pred ecCccHH-----HHHHHHHHHhhcC-----chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceee Confidence 9653211 1122333333221 2455555788999999999997642 21 11 1112233322222 Q ss_pred EcCCCcccceee----E----------EEE----EeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHH Q lcl|Aclame:pro 145 MVMVDGLRRKVF----E----------AYD----IDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLA 206 (457) Q Consensus 145 ~~~~~~~~~~~~----~----------~y~----~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~ 206 (457) .+..+....... . .+. .......+....++.+..++.++....+.+||.|.+..+....-.. T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK 228 (446) T protein:vir:98 149 ANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFK 228 (446) T ss_pred eccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHH Confidence 222211100000 0 000 0000111223457788888888887778899999999999999999 Q ss_pred HHHHHHHHHHHHccCCcceEEecCCCCCHHHH---------HHHHHHHHHHhcc-ccccCcce---eccCcceeeeccCC Q lcl|Aclame:pro 207 LAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL---------ARAREAWRAANSG-VDNAHRVA---LLTEGAKFSKVAMS 273 (457) Q Consensus 207 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~---------~~~~~~~~~~~~~-~~n~~~~~---vl~~g~~~~~~~~s 273 (457) ....++...|....|.|--+.+.+...++++. +...+++.++... ..+++.++ ++++|++++-++.. T Consensus 229 ~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~ 308 (446) T protein:vir:98 229 RAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTG 308 (446) T ss_pred HhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccc Confidence 99999999999999999999998766543222 1222334444432 23333332 34889888777543 Q ss_pred hh-HHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCcccc----- Q lcl|Aclame:pro 274 PD-EAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD----- 347 (457) Q Consensus 274 ~~-d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~----- 347 (457) .. -..|.+..++..++|+.+.....-.+|...+.+.|++- .+.+.....+.+.-.++.|++.||+.|+.+.-. T Consensus 309 ~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~al-a~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~ 387 (446) T protein:vir:98 309 NNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRA-SEIQLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDP 387 (446) T ss_pred cCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc Confidence 22 23478888999999999987776666544333333332 344556677888999999999999988764431 Q ss_pred cc-------ceEEEecchhhhccHHHHHHHHHHHHhCCCcCH---HHHHHHhCCCCCCCCC Q lcl|Aclame:pro 348 RF-------RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSI---DEVRAAEDMTPLPDGL 398 (457) Q Consensus 348 ~~-------~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~---nE~R~~~G~~p~~~~~ 398 (457) .. .+++|++. ...|.+..+++++++++.|+.++ +.+|+.+|+|+-...- T Consensus 388 ~~~~~~~~~~~~~~~~~--e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 388 ALYPLASNTGYITRLPG--RATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred cccccccccccceeccC--ChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 00 12334333 46788899999999999998765 4599999998654311 No 133 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.69 E-value=2.7e-16 Score=105.92 Aligned_cols=420 Identities=14% Similarity=0.086 Sum_probs=208.3 Q ss_pred Cch------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MGF------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIAT 68 (457) Q Consensus 1 Mg~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 68 (457) |-= +..+++-..+.. .+..+...++.+ . ...... ..+..++.+.|.+|++.+...|.+ T Consensus 1 ~~~~~~~~~gl~p~rl~~i~~~~~~~~----~~~~~~~~~~~L---r--~~~~~~-ly~~m~~D~hi~s~l~~Rk~av~~ 70 (488) T protein:vir:95 1 MADITETQESLPPFRMGEVGSLGLKVK----NGRIYEEPRQAL---R--FPESIK-TFQLMMRDPAVAASVNIIKMFVRK 70 (488) T ss_pred CCCccccCCCCCHHHHHHHHHHhhccc----cchhhccchhhh---c--ccchHH-HHHHHhhChHHHHHHHHHHHHHhc Confidence 110 001110000000 000000000000 0 001111 245566799999999999999999 Q ss_pred CceEEEEeccCceee---ecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------------c-- Q lcl|Aclame:pro 69 LPLSTYSKRGGTRKE---IDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP--------------N-- 129 (457) Q Consensus 69 ~p~~~~~~~~~~~~~---~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g--------------~-- 129 (457) ++|.|....+..... .....+...+.. -..++.+++..+. +.+++|-++.+++...+ . T Consensus 71 ~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~--~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~ 147 (488) T protein:vir:95 71 VNWRFVPPKGKEQDPKMLERADFFNSLMDD--MEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIG 147 (488) T ss_pred CCceEecCCCCchhHHHHHHHHHHHHHHhc--cCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeee Confidence 999997543221110 111122222221 2234667777764 57899999999976421 1 Q ss_pred eeEEEEecccee-EEEEcCCCcccceeeEEEE-Ee------eecccceeEEeccceEEEeccCCccCCccccchhHHHHH Q lcl|Aclame:pro 130 IAGLDVLDPTKI-HVHMVMVDGLRRKVFEAYD-ID------ADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARE 201 (457) Q Consensus 130 ~~~~~~l~p~~v-~~~~~~~~~~~~~~~~~y~-~~------~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~ 201 (457) +..+.+.|+.+. .+..+.+++.......... .. ..........+++...|+.++....+.+||.+.+..+.. T Consensus 148 ~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w 227 (488) T protein:vir:95 148 WAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYV 227 (488) T ss_pred eeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHH Confidence 223333333211 1122222222111000000 00 000011223466666666566555678899999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCC----CCCHHHHHHHHHHHHHHhccc-cccCcceeccCcceeee------- Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPG----TMSEEGLARAREAWRAANSGV-DNAHRVALLTEGAKFSK------- 269 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~------- 269 (457) ..-......++...|....+.|--+...+. ..++++.+.+.+.+.+..... .+...-++++.|+++.. T Consensus 228 ~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~ 307 (488) T protein:vir:95 228 PWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEF 307 (488) T ss_pred HHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhh Confidence 999999999999999998665555555432 233344444444444332111 11122356666654321 Q ss_pred --ccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhccc--c--ccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc Q lcl|Aclame:pro 270 --VAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLISDA--T--NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF 342 (457) Q Consensus 270 --~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~--~--~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll 342 (457) ++.. ..-..|.+..++..++|+.+. ||.. . +.+.+++ ..+.+.......+.-.++.|+..||++|+ T Consensus 308 ~l~~~~~~~~~~~~~li~~~d~~Isk~i------LGqtLT~~~~~~Gs~A-l~~vh~ev~~~i~~aDa~~i~~tln~~li 380 (488) T protein:vir:95 308 SLVSRQGAKAYDTGSIIDRYSKQIMMAF------MSDVLAMGQSKYGSFS-LADSKTSLLAMSVDILLKQIKNVINRDLV 380 (488) T ss_pred hccccccCCchhHHHHHHHHHHHHHHHH------hccccccccCcchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222 122346677778888888775 4431 1 1122222 33556677788899999999999999888 Q ss_pred Cccc-----cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCCCCceeeecccccccc Q lcl|Aclame:pro 343 AETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSI-----DEVRAAEDMTPLPDGLGEKYRVPLNLGEIG 412 (457) Q Consensus 343 ~~~~-----~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~-----nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~ 412 (457) ++.- ....+.+|.++.....|.+..+++++++++.|+.-+ +.+|+.+|+|+-++ +.....+. .+ T Consensus 381 ~~l~~~Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~--~e~~~~~~--~~-- 454 (488) T protein:vir:95 381 AQTYALNMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADE--SQPVSEKL--SP-- 454 (488) T ss_pred HHHHHhcCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCC--CccccccC--CC-- Confidence 7542 222334455566677888999999999999998764 56899999996543 32222221 00 Q ss_pred cccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccC Q lcl|Aclame:pro 413 EEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDD 456 (457) Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (457) ..++........+. .+....+. .+ +....+.++. T Consensus 455 ---~~~~~~~~~~~~~~---~~~~~~~~-~~---~~~~a~~~~~ 488 (488) T protein:vir:95 455 ---NSQSRSGDGYKTAG---EGTAKTPS-AK---DPSTANKANK 488 (488) T ss_pred ---CCCCCCCcccCCCc---ccCCcccc-cc---cchhhhhccC Confidence 00000000000000 00000000 00 0000000001 No 134 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.58 E-value=3e-15 Score=100.21 Aligned_cols=438 Identities=13% Similarity=0.062 Sum_probs=238.1 Q ss_pred Cchhhhhhccccccccccc----------ccccccccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAA----------EGRAWEPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~ 69 (457) |.+++- |.+.+..... .+.......-.+.--.....+.+...+-.++. .|.++..+++|+++|+++ T Consensus 1 ~~~~rP---k~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~ 77 (646) T protein:vir:10 1 MALLKP---KSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQA 77 (646) T ss_pred CcccCC---CCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhcee Confidence 877741 2222111100 00000000000000011112223333344554 488999999999999999 Q ss_pred ceEEEEeccCce--eeecCcchhhhccCCCCCC-CHHHHHHHHHHHHHHcCCeEEEEE---ec-CCceeEEEEeccceeE Q lcl|Aclame:pro 70 PLSTYSKRGGTR--KEIDTPEWLDFPNAEPGGM-GRIDILSQTVLSLLLQGNAFLAVR---WA-GPNIAGLDVLDPTKIH 142 (457) Q Consensus 70 p~~~~~~~~~~~--~~~~~~~~~~l~~~pn~~~-~~~~f~~~~~~~~l~~G~~~~~i~---~~-~g~~~~~~~l~p~~v~ 142 (457) .+..-.-.+.+. ..+.++...++...+-... ...++++.++.++-+-|++|++.. .. .+.-...+++....|. T Consensus 78 rL~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev~ 157 (646) T protein:vir:10 78 RLYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAIS 157 (646) T ss_pred eeeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHhc Confidence 998766554332 2233444444444444333 345789999999999999999752 11 1222234445555552 Q ss_pred EEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEecc--CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 143 VHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPG--MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNG 220 (457) Q Consensus 143 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~--~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~ 220 (457) - .+....+ ......++...+.....++ .+|. +.|....+-.||+.+++..+.......+......+.- T Consensus 158 ~-----tg~~~~i----~~p~~~~g~~~v~~~~~d~-lvRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSR 227 (646) T protein:vir:10 158 R-----TGDEIAV----RRPQQRGGSKLVLVDGQDI-LIRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSR 227 (646) T ss_pred c-----CCCeeee----ecCccCCCCCcceecCCce-EEEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHH Confidence 1 1111110 0111111233344445555 3354 4555667899999999999998888888888877777 Q ss_pred CCcceEEecCCCCC-------HHHHHHHHHHH----HHHhccccccCc-c-eeccC-cc------eeeeccCC-hhHHHH Q lcl|Aclame:pro 221 AMPGAVVEVPGTMS-------EEGLARAREAW----RAANSGVDNAHR-V-ALLTE-GA------KFSKVAMS-PDEAQF 279 (457) Q Consensus 221 ~~~~~~~~~~~~~~-------~e~~~~~~~~~----~~~~~~~~n~~~-~-~vl~~-g~------~~~~~~~s-~~d~~~ 279 (457) .+-.|++.++..++ +-....+...+ ...+...+++.. | +++.. |. +++.+.+. .-+.-- T Consensus 228 L~GnGvLfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~a 307 (646) T protein:vir:10 228 LTGAGIMFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEI 307 (646) T ss_pred HhcCceeeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHH Confidence 77788888775543 22233444443 344444444333 2 22221 11 33433332 233345 Q ss_pred HHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccc-------cccce Q lcl|Aclame:pro 280 LQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETA-------DRFRF 351 (457) Q Consensus 280 ~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~-------~~~~~ 351 (457) +.+++..+..||....|||+.| |.. ++|-+++= +-...-++ -|.|.+..|.++|++.+|.+.- ...+- T Consensus 308 iktR~daI~RlA~glDIppE~LLGlg-d~NHWtAW--qI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyv 383 (646) T protein:vir:10 308 TPMKDKAIARLASSAEIPGEVLTGIG-DANHWTAW--LISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYA 383 (646) T ss_pred hhhHHHHHHHHHhccCCchhheeecc-ccceeeee--eeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeE Confidence 7899999999999999999887 655 56665431 11112234 4999999999999998876432 12355 Q ss_pred EEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee---------eccccc--ccccccccccc Q lcl|Aclame:pro 352 VKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYR---------VPLNLG--EIGEEPEPEPA 420 (457) Q Consensus 352 ~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~---------~~~n~~--~~~~~~~~~~~ 420 (457) +.||.+.|...-.+. +.+..+.+.|.+|-...|+.+|+.--+++--++.. .+-+++ |..+..-+.+. T Consensus 384 vW~DaS~Lt~~pd~~--deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~ 461 (646) T protein:vir:10 384 FAFDTSTLASKPNRL--DEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPA 461 (646) T ss_pred EeecCcccccCCCCc--HHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCC Confidence 678888765433222 33347888999999999999999654332111110 011111 22222211122 Q ss_pred cCCCc-cCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 421 PAPPA-IDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 421 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .++.+ +-...++..++.+++...+.+.+++..|++|+ T Consensus 462 ~~~~~lpp~~~~~~dg~~~~~e~~g~~~~~E~~~~pda 499 (646) T protein:vir:10 462 VQSVGLPPTAAQRTDGDLDDDESEGAPNGGEAPDQPDA 499 (646) T ss_pred cCccccCCcccccccCCCCChhhcCCCCCCccCCCCCC Confidence 11111 11233444444555666677777777777765 No 135 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=99.51 E-value=1e-14 Score=97.26 Aligned_cols=440 Identities=15% Similarity=0.137 Sum_probs=224.2 Q ss_pred Cchhhh--hhcccc--cccc----cccccccccccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MGFWSA--LFGRGH--SPAL----DAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg~~~~--l~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~ 71 (457) |.--.. +-+|.+ +++. ........++.-..-...+....+.+...+-.++. ++.++-.+..|+++|+++.+ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRL 80 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 443322 222322 1111 11111111111111111111222233333444554 58899999999999999999 Q ss_pred EEEEeccC-----ceeeecC---cchhhhcc-CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--c----------e Q lcl|Aclame:pro 72 STYSKRGG-----TRKEIDT---PEWLDFPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP--N----------I 130 (457) Q Consensus 72 ~~~~~~~~-----~~~~~~~---~~~~~l~~-~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g--~----------~ 130 (457) ..-.-+.+ +.....+ ........ -+-..+.-.++++.++.++-+-|++|+.+....+ . . T Consensus 81 ~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~ 160 (631) T protein:vir:10 81 VASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTR 160 (631) T ss_pred EeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccc Confidence 87665433 1111111 22223333 3445567789999999999999999999854211 1 2 Q ss_pred eEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEecc-ceEEEeccCCccCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTP-RDVLHIPGMMLPGDFVGCSPISYARESIGLALAA 209 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~ 209 (457) .+.+++....+...-..++ ..+... .+. ....... +=++.+=.+.|....+-.||+.+++..+...... T Consensus 161 ~~W~~vt~~ei~~~~~g~g-------~~v~lp--~g~-~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~ 230 (631) T protein:vir:10 161 QEWYAVSKEEIKKSNKGSG-------TNIVLP--TGE-EHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRT 230 (631) T ss_pred cceeeccHHHHhcccCccc-------ceeecC--CCC-ccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHh Confidence 2333444444421111110 001111 111 1111111 2233333455666778999999999999988888 Q ss_pred HHHHHHHHHccCCcceEEecCCCCC---------------------HHHHHHHHHHHH----HHhccccccCc-c-eecc Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPGTMS---------------------EEGLARAREAWR----AANSGVDNAHR-V-ALLT 262 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~~~~---------------------~e~~~~~~~~~~----~~~~~~~n~~~-~-~vl~ 262 (457) .+......+.-.+-.|++.++..++ .....++.+.+. ..+...+++.. + +++. T Consensus 231 t~~i~aaakSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~ 310 (631) T protein:vir:10 231 TKTIANASKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAG 310 (631) T ss_pred hhHHHHHHHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEe Confidence 8877777777777777887765432 225555555554 34444443333 2 2221 Q ss_pred -Cc---ceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 263 -EG---AKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAG 336 (457) Q Consensus 263 -~g---~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ 336 (457) .+ -+++.+.+. .-+.--+.+++..+..||....|||+.| |...++|-+++= +-...-++--|.|.+..|.++ T Consensus 311 ~p~E~i~~i~hlkf~~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAW--qI~dedVrlHI~P~l~lic~A 388 (631) T protein:vir:10 311 VPGEQIKDVKHIRFDNEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAW--QISDEDVQLHIAPVMEIFCQA 388 (631) T ss_pred echHHhcCeeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEE--EecccceeeecchHHHHHHHH Confidence 11 133334332 2334457899999999999999999876 665566655431 111123455699999999999 Q ss_pred HHhhhcCccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC------------ Q lcl|Aclame:pro 337 FNRLLFAETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL------------ 398 (457) Q Consensus 337 l~~~ll~~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~------------ 398 (457) |++.+|.+.- ...|-+.||.+.|...-.+. +.+..+.+.|.+|-...|+.+|+.--.+.. T Consensus 389 lT~q~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPdr~--deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~ 466 (631) T protein:vir:10 389 LTDQILRVTLAREGIDPSKYVVWYDPSQLTIDPDKS--DEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQ 466 (631) T ss_pred HHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHH Confidence 9998876332 23456678888765432222 233478889999999999999996533311 Q ss_pred ----Cceeeecccccccccc-cccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 399 ----GEKYRVPLNLGEIGEE-PEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 399 ----gd~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .|.-++| +++++... .....-+++.+...+.+++.+..+ ...++.. +..+++++++ T Consensus 467 ~av~~dpaLip-~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~~-~~~~g~~-epdt~d~~p~ 527 (631) T protein:vir:10 467 DAVSKDPTLIP-MLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDAD-DLDDGEQ-EPDTEDDDDG 527 (631) T ss_pred HHhhcccCcch-hhHHHHHHHhhhccCCCCCCCCCCCCCcccccc-ccccCCC-CCCCCCCCCc Confidence 0111111 22221111 001111112222222222222221 1111111 1112222222 No 136 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.45 E-value=9e-14 Score=92.10 Aligned_cols=379 Identities=14% Similarity=0.080 Sum_probs=171.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHH---HHh-ccHHHHHHHHHHHHhhc-cCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPH---DAL-QVSAVFASVRLLSETIA-TLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~-~~~~v~~~i~~ia~~ia-~~p~~~~~ 75 (457) ||+.+-+.+...+. +..+..++ .+ ..++.+ .++ ++..++.+|+.+++.+- +.|. +.. T Consensus 23 d~l~~~~~glg~~r-------------~~~~~~~g-~~---~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~~-i~~ 84 (449) T protein:vir:10 23 MGLMVPTMGLDNKR-------------HSAWCEYG-FP---ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPE-IIE 84 (449) T ss_pred HHHHHHHhcCCccc-------------chhhhhcC-Cc---ccCCHHHHHHHHhcCchhHHHHHhhhhhhhhcCcc-ccc Confidence 55544333322111 11111111 11 123332 233 46778899999998763 2222 211 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC----------CceeEEEEeccceeEEE Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-WAG----------PNIAGLDVLDPTKIHVH 144 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~-~~~----------g~~~~~~~l~p~~v~~~ 144 (457) ..+ .........+...+.+-+...-+..+....-+ ..++|.+.+++. +++ +++..+.|+....+++. T Consensus 85 g~~-~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~-~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~~~ 162 (449) T protein:vir:10 85 GDD-ADDSEDETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA 162 (449) T ss_pred Ccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCcEEEEEEecCCCCCCcccccCcceeeEEeeccccCChh Confidence 111 11111111111111111100001122223233 356777766653 332 24555666655444433 Q ss_pred EcCCCc--ccceeeEEEEEeee--cccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHH-HHHHHHHHc Q lcl|Aclame:pro 145 MVMVDG--LRRKVFEAYDIDAD--GNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQ-KYGAHFFRN 219 (457) Q Consensus 145 ~~~~~~--~~~~~~~~y~~~~~--~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~-~~~~~~~~n 219 (457) ....+. -.+.-...|.+... .+......+-++-|+||... +.-|.|.++.+...+.....+. -+...++++ T Consensus 163 ~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~ 238 (449) T protein:vir:10 163 EWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKN 238 (449) T ss_pred hhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhHHHhhhhHHHHHHHH Confidence 221111 11111112222211 11222234666777776332 2347788888876654333332 122222222 Q ss_pred cCC-----------cceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHH Q lcl|Aclame:pro 220 GAM-----------PGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVP 288 (457) Q Consensus 220 ~~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~ 288 (457) -.+ ..++........++..+++........++. ..+.+..+.+++.++.++.+.. +....... T Consensus 239 ~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~----~~~~i~~~~d~~~~~~~~sgl~--d~l~~~~q 312 (449) T protein:vir:10 239 AARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVADPT--ATYNVNLQ 312 (449) T ss_pred HHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccc----hheeecCCcceEEEecccCChh--HHHHHHHH Confidence 111 111111111112233334433333333322 2345667778999888877654 56777788 Q ss_pred HHHHHhCCCHHHhccccccccccchHHHHHHHHH------HHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhc Q lcl|Aclame:pro 289 EIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT------MFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRG 362 (457) Q Consensus 289 ~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~------~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~ 362 (457) +||.+.+||...|-....+..++ + ++ .+.|+ +.-|.|.++.+-+.|-+.-+.. ....+.|.+++|... T Consensus 313 ~iaaa~~IP~t~L~Gqsp~glns-t-~D-~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~---~~~d~~i~f~pL~~~ 386 (449) T protein:vir:10 313 TAAAGVDIPTRILIGNQQAERSS-T-ED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAKKAVIWDDLNEQ 386 (449) T ss_pred HHHHHhCCCeeeeeccCcccccc-c-hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCC---CCCceeEEeCCCCCC Confidence 89999999998874333344432 2 22 23343 2335666666655544332221 112477888899988 Q ss_pred cHHHHHHH-------HHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCC Q lcl|Aclame:pro 363 APKERMEL-------WSLGLQNG---IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPA 430 (457) Q Consensus 363 d~~~~~~~-------~~~~~~~g---~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 430 (457) +.+++++. +++++++| +++++|+|+.+|++|..+.. . +.+..++. +++.+..+ T Consensus 387 t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~---~-------~~e~~de~-----~~~~d~~a 449 (449) T protein:vir:10 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP---L-------GEEDGDEE-----DKATDSAA 449 (449) T ss_pred CHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCC---C-------CCCCCccc-----cccCCcCC Confidence 88887654 44566666 89999999999998854310 0 00000000 00000000 No 137 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.42 E-value=2.5e-13 Score=89.69 Aligned_cols=438 Identities=12% Similarity=0.053 Sum_probs=196.0 Q ss_pred Cch--------------hhhhhcc-cc--ccccc--ccccccccc-cchhhhcccccccCccccCHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MGF--------------WSALFGR-GH--SPALD--AAEGRAWEP-YDPSIYNLGATASSGERVTPHDALQVSAVFASVR 60 (457) Q Consensus 1 Mg~--------------~~~l~~~-~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~ 60 (457) .+- +.+.|-- .. .+... ...+..+.. ....+..+.+...-|.+ ....+.++|-+++|+. T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~-~la~laQ~~eyr~~~~ 130 (698) T protein:vir:10 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPEYRAMHE 130 (698) T ss_pred ccccccccccCCCccccccccceeccccCCccccchhhhhhcccccccccchhhhccCcchHH-HHHHHhhccchhhHHH Confidence 111 1111110 00 00000 000000000 00000000011111111 2345667899999999 Q ss_pred HHHHhhccCceEEEE-ecc------------CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-c Q lcl|Aclame:pro 61 LLSETIATLPLSTYS-KRG------------GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-A 126 (457) Q Consensus 61 ~ia~~ia~~p~~~~~-~~~------------~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~ 126 (457) .|++.+..- |.-.. ..+ +.....+.+....+..+-. .....+-+...+.+--++|-+.+++.- . T Consensus 131 ~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~e-rl~V~~~l~eai~~aRlfGGa~~~i~I~g 208 (698) T protein:vir:10 131 VLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE-RLRIRDAVRTTVIHDQAFGRAHPYFKIKG 208 (698) T ss_pred HHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccceEEEEEeec Confidence 999998765 42211 100 0111111112222222211 222233334444445566666544421 1 Q ss_pred -----------------CCceeEEEEeccceeEEEEcCCCccc--ceee-EEEEEeeecccceeEEeccceEEEeccCCc Q lcl|Aclame:pro 127 -----------------GPNIAGLDVLDPTKIHVHMVMVDGLR--RKVF-EAYDIDADGNEVLLGWFTPRDVLHIPGMML 186 (457) Q Consensus 127 -----------------~g~~~~~~~l~p~~v~~~~~~~~~~~--~~~~-~~y~~~~~~~~~~~~~~~~~evih~~~~~~ 186 (457) .|.++.+.+++|..|++.......-. .+.. ..|.+. + ..+-.+-++.+..... T Consensus 209 dd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G----~~IH~SRL~~~vg~pv 281 (698) T protein:vir:10 209 DDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G----SEVHATRLHTIVSRPV 281 (698) T ss_pred CccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEEEe---c----ceecceeEEEecCCCc Confidence 24556688888888876432211110 0111 112111 1 1233333333332221 Q ss_pred ------cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHH--HHHHHHhccccccCcc Q lcl|Aclame:pro 187 ------PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAR--EAWRAANSGVDNAHRV 258 (457) Q Consensus 187 ------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~n~~~~ 258 (457) ...+.|.|..+.+...|.......+......+.-.........-..++.....++. -++.+.+. +| .++ T Consensus 282 pd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~R--sn-~G~ 358 (698) T protein:vir:10 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALTPGANVDLSMRAELINRYR--DN-RNI 358 (698) T ss_pred hhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhc--Cc-cce Confidence 22357999999999999988888777777665433222211111112222222232 23434444 23 455 Q ss_pred eecc-CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHH-------HHHHhhHH Q lcl|Aclame:pro 259 ALLT-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT-------MFSLRPWL 330 (457) Q Consensus 259 ~vl~-~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~-------~~~l~P~~ 330 (457) .+++ +..+|.+.+.+.+.++ +....+.++||.+-+||...|-.......+. +.|...++|+ ..-|+|.+ T Consensus 359 ~llDk~~Eefeq~st~lSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNA-TGE~D~rnYYD~I~s~Qe~~L~p~L 435 (698) T protein:vir:10 359 LFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNA-SSEGEIRVWYDYVRAYQRNALQQLM 435 (698) T ss_pred EEEecCCcceEEEecCcCCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccCc-cchhhHHHHHHHHHHHHHHHHHHHH Confidence 6667 5788999887776654 5677788999999999998774333333321 1233344444 55788999 Q ss_pred HHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCC-----C Q lcl|Aclame:pro 331 ERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMEL-------WSLGLQNGIYSIDEVRAAEDMTPLPDG-----L 398 (457) Q Consensus 331 ~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~-------~~~~~~~g~~T~nE~R~~~G~~p~~~~-----~ 398 (457) +.+-+.|-+..+..... .+.|.++.|...+.++++++ ...+++.|+++++|+|.++.-+|-.+- . T Consensus 436 ~rl~~ii~rS~~G~idp---~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~ 512 (698) T protein:vir:10 436 NDVIVMIQLSLFGAVDP---SIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDA 512 (698) T ss_pred HHHHHHHHHHhcCCCCC---cceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCC Confidence 88888887777665443 36677788888887776665 445678899999999999865543210 0 Q ss_pred Cceeeecc-ccccccc-----ccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 399 GEKYRVPL-NLGEIGE-----EPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 399 gd~~~~~~-n~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) -|.+..|. |.++... .....++..+.+....-...+.++...+..-..+..+....+-+ T Consensus 513 ~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (698) T protein:vir:10 513 NDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAGATAPPAAANVNANANPREAGAQDAA 577 (698) T ss_pred cccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCCCCCCcccccccCCCCccccCcccce Confidence 11111111 1111000 00000000000000000001111111111111111111111111 No 138 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.42 E-value=1.2e-12 Score=86.02 Aligned_cols=309 Identities=10% Similarity=0.021 Sum_probs=167.2 Q ss_pred EEEEEec--CC--ceeEEEEeccceeE-EEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccCCccCCccccc Q lcl|Aclame:pro 120 FLAVRWA--GP--NIAGLDVLDPTKIH-VHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCS 194 (457) Q Consensus 120 ~~~i~~~--~g--~~~~~~~l~p~~v~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s 194 (457) +.+|+.. +| .+..+.+.++.++. ...+.+++.... .+... .+.....+++...|+.++....+.+||.+ T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~----~~~~~--~g~~~~~lp~~kfi~~~~~~~~g~p~G~g 74 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAI----EQWGV--FGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEE----EecCC--CCCCcceeccCCEEEEEeCCCCCCccchh Confidence 5566543 23 35566777776554 233333332111 11111 11222456777777666666667789999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC--CCCHH-------HHHHHHHHHH---HHhccccccCcceecc Q lcl|Aclame:pro 195 PISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG--TMSEE-------GLARAREAWR---AANSGVDNAHRVALLT 262 (457) Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~e-------~~~~~~~~~~---~~~~~~~n~~~~~vl~ 262 (457) .+..+...........++...|....+.|--+...+. ..+.+ ..+..++.+. +.+.... ...++++ T Consensus 75 Llr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~--~a~~iip 152 (355) T protein:vir:78 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE--AAGGYIP 152 (355) T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCc--ceeEeec Confidence 9999999999999999999999999855544444432 22111 1122222222 2222211 2467888 Q ss_pred CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc Q lcl|Aclame:pro 263 EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF 342 (457) Q Consensus 263 ~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll 342 (457) .|++++-+..+.....+.++.++..++|+.++--.---.+.. +++.|++ ..+.+.....+.+.-.+..|+..||+.|+ T Consensus 153 ~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~-~~gGS~A-lg~vh~~v~~~~~~aD~~~i~~~ln~~li 230 (355) T protein:vir:78 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGD-KSTGSYA-LGDTFASFFTGSLNAVMKHIADVTQQHVV 230 (355) T ss_pred CCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccC-Cccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999888777665556678888999999988753332112111 1112222 23556677888899999999999999887 Q ss_pred Cccc-----cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHH-----HHHHHhCCCCCCCCCCceeeecccccccc Q lcl|Aclame:pro 343 AETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSID-----EVRAAEDMTPLPDGLGEKYRVPLNLGEIG 412 (457) Q Consensus 343 ~~~~-----~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~n-----E~R~~~G~~p~~~~~gd~~~~~~n~~~~~ 412 (457) .+.- ....+.+|.+.... .+.+..++.+++++..|++-++ .+|+.+|+|.-.+ ++....+.. T Consensus 231 ~~l~~lN~~~~~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~--~~~~~~~~~----- 302 (355) T protein:vir:78 231 EDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAA----- 302 (355) T ss_pred HHHHHhcCCCCCCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCC--CCcccCCcc----- Confidence 6432 11122233343333 4556778999999999997654 4799999974322 332221110 Q ss_pred cccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 413 EEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +...+....... +...+..+........++.+.- T Consensus 303 ------~~~~~~~~~~~~-----~~~~~~~~~~a~~~~a~~~~~~ 336 (355) T protein:vir:78 303 ------AKAAGRRRAKRL-----PGQRQGAALPSRSPRADPPRRR 336 (355) T ss_pred ------cccccccccccc-----CCccccccccccCCCCCChhhh Confidence 000000000000 0000111111111111111111 No 139 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.39 E-value=6.8e-13 Score=87.28 Aligned_cols=437 Identities=13% Similarity=0.065 Sum_probs=195.7 Q ss_pred Cch--------------hhhhhcc-cc--ccccc--ccccccccc-cchhhhcccccccCccccCHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MGF--------------WSALFGR-GH--SPALD--AAEGRAWEP-YDPSIYNLGATASSGERVTPHDALQVSAVFASVR 60 (457) Q Consensus 1 Mg~--------------~~~l~~~-~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~ 60 (457) .+- +.+.|-- .. .+... ...+..+.. ....+..+.+...-|.+ ....+.++|-+++|+. T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~-~la~laQ~~eyr~~~~ 130 (695) T protein:vir:78 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPEYRAMHE 130 (695) T ss_pred ccccccccccCCCcccccceeceeccccCCccccchhhhhhcccccccccchhhhccCcchHH-HHHHHhhccchhhHHH Confidence 111 1111110 00 00000 000000000 00000000011111111 2345667899999999 Q ss_pred HHHHhhccCce-EEEEecc------------CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-c Q lcl|Aclame:pro 61 LLSETIATLPL-STYSKRG------------GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-A 126 (457) Q Consensus 61 ~ia~~ia~~p~-~~~~~~~------------~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~ 126 (457) .|++.+..- | .+....+ +.....+.+....+..+- ......+-+...+.+--++|-+.+++.- . T Consensus 131 ~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~-erL~V~~~l~eaik~aRlfGGa~~~i~i~g 208 (695) T protein:vir:78 131 VLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI-ERLRIRDAVRTTVIHDQAFGRAHPYFKIKG 208 (695) T ss_pred HHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccceEEEEEecc Confidence 999998765 4 2211100 011111111222222221 1222233344444445566666544421 1 Q ss_pred -----------------CCceeEEEEeccceeEEEEcCC-Cc---ccceeeEEEEEeeecccceeEEeccceEEEeccCC Q lcl|Aclame:pro 127 -----------------GPNIAGLDVLDPTKIHVHMVMV-DG---LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM 185 (457) Q Consensus 127 -----------------~g~~~~~~~l~p~~v~~~~~~~-~~---~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~ 185 (457) .|.++.+.+++|.+|++..... +. ..+.. ..|.+.. ..+-.+-++.+.... T Consensus 209 dd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP-~~y~V~G-------~kIH~SRL~~f~g~p 280 (695) T protein:vir:78 209 DDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKP-STWWMIG-------TEVHATRLHTIVSRP 280 (695) T ss_pred CccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCC-ceEEEec-------eEEeeeeEEEecCCC Confidence 2456668888888887654321 11 11111 1111111 123233333333222 Q ss_pred c------cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHH--HHHHHHHhccccccCc Q lcl|Aclame:pro 186 L------PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARA--REAWRAANSGVDNAHR 257 (457) Q Consensus 186 ~------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~n~~~ 257 (457) . ...+.|.|..+.+...|..............+.-.........-..+......++ +-++.+.+. +| .+ T Consensus 281 lPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~R--sn-~G 357 (695) T protein:vir:78 281 VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR--DN-RN 357 (695) T ss_pred chhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhc--Cc-cc Confidence 1 2245899999999999998888887777776553322221111111222122222 223334444 22 45 Q ss_pred ceecc-CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHH-------HHHHhhH Q lcl|Aclame:pro 258 VALLT-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT-------MFSLRPW 329 (457) Q Consensus 258 ~~vl~-~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~-------~~~l~P~ 329 (457) +.+++ +..+|.+.+.+.+.++ +....+.++||.+-+||...|-.......+ ++.|...++|+ ..-|+|. T Consensus 358 ~~llDk~~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlN-ATGE~D~rnYYD~I~s~Qe~~L~p~ 434 (695) T protein:vir:78 358 ILFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQQL 434 (695) T ss_pred eEEEecCCcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccc-ccchhhHHHHHHHHHHHHHHHHHHH Confidence 66677 4788999887776654 566777899999999999877433333332 11233334444 5578899 Q ss_pred HHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCC----- Q lcl|Aclame:pro 330 LERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMEL-------WSLGLQNGIYSIDEVRAAEDMTPLPDG----- 397 (457) Q Consensus 330 ~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~-------~~~~~~~g~~T~nE~R~~~G~~p~~~~----- 397 (457) ++.+-+.|-+..+..... .+.|.++.|...+.++++++ ...+++.|+++++|+|.++.-+|--+- T Consensus 435 L~rl~~ii~rS~~G~idp---di~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D 511 (695) T protein:vir:78 435 MNDVIVMIQLSLFGAVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) T ss_pred HHHHHHHHHHHhcCCCCC---cceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccc Confidence 988888887777665443 36667778887777766655 455778999999999999877653220 Q ss_pred CCceeeecccccccccccccccc-cCCCccCCCCCCCCCCCCcccCC--CCccccccccccCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPA-PAPPAIDPPAEEPADDEEPDNAE--GDPDEGETEDDDDA 457 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 457 (457) ..|.+-+|....--+.....+.. ..++..++++...+....++..+ ..-++.+..-.+-+ T Consensus 512 ~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ag~~~~~ 574 (695) T protein:vir:78 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAA 574 (695) T ss_pred cccCCCcCccchhhhhHhhhcCcccccccCCCCCCCCCCCCCCceeeeeccccccccCCCCcc Confidence 01111111100000000000000 00000111111111111111111 00000000001111 No 140 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.38 E-value=9.8e-13 Score=86.41 Aligned_cols=437 Identities=12% Similarity=0.057 Sum_probs=195.2 Q ss_pred Cchhhhhhcccc---cccccc--cccccccc-cchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSALFGRGH---SPALDA--AEGRAWEP-YDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~l~~~~~---~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) -+=+.++|---. .+.... ..+..+.. ....+..+.+...-|.+ ....+.++|-+++|+..|++.+..- |.-. T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~-~la~laQ~~eyr~~~~~ia~e~~R~-w~~~ 142 (694) T protein:vir:10 65 SLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPEYRAMHEVLADECIRT-WGEA 142 (694) T ss_pred chhhhhhccccccCCCccccchhhhhhccCcccccchhhhhccCcchHH-HHHHHhhccchhhHHHHHHHHhhcc-ccee Confidence 111222221000 000000 00000000 00000000000111111 2345667899999999999998765 4221 Q ss_pred E-ecc------------CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ec-------------- Q lcl|Aclame:pro 75 S-KRG------------GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-WA-------------- 126 (457) Q Consensus 75 ~-~~~------------~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~-~~-------------- 126 (457) . ..+ +.....+.+....+..+- ......+-+...+.+--++|-+.+++. .. T Consensus 143 ~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~-erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~ 221 (694) T protein:vir:10 143 IGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI-ERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPY 221 (694) T ss_pred ccccchhhhhhcccccccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccc Confidence 1 100 011111111222222221 122223334444444556666655542 11 Q ss_pred ---CCceeEEEEeccceeEEEEcCC-Cc---ccceeeEEEEEeeecccceeEEeccceEEEeccCCc------cCCcccc Q lcl|Aclame:pro 127 ---GPNIAGLDVLDPTKIHVHMVMV-DG---LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMML------PGDFVGC 193 (457) Q Consensus 127 ---~g~~~~~~~l~p~~v~~~~~~~-~~---~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~------~~~~~G~ 193 (457) .|.++.+.+++|.+|++..... +. ..+.. ..|.+.. ..+-.+-++.+..... ...+.|. T Consensus 222 ~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP-~~y~V~G-------~~IH~SRL~~f~g~plPd~LKp~y~~~G~ 293 (694) T protein:vir:10 222 TVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKP-STWWMIG-------TEVHATRLHTIVSRPVGDMLKPTYSFAGI 293 (694) T ss_pred cccCcceeeeEeecccccccchhhhccchhhccCCC-ceEEEec-------eEEeeeeEEEecCCCchhhhhcccccCcc Confidence 2456668888888887653321 11 11111 1111111 1232333333332221 2245899 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHH--HHHHHHHhccccccCcceecc-Ccceeeec Q lcl|Aclame:pro 194 SPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARA--REAWRAANSGVDNAHRVALLT-EGAKFSKV 270 (457) Q Consensus 194 s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~ 270 (457) |..+.+...|..............+.-.........-..+......++ +-++.+.+. +| .++.+++ +..+|.+. T Consensus 294 Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~R--sn-~G~~llDk~~Eefeq~ 370 (694) T protein:vir:10 294 SMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR--DN-RNILFLDKATEEFFQF 370 (694) T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhc--Cc-cceEEEecCCcceEEE Confidence 999999999998888877777776553322221111111121112222 223334444 22 4566677 47889998 Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHH-------HHHHhhHHHHHHHHHHhhhcC Q lcl|Aclame:pro 271 AMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT-------MFSLRPWLERIEAGFNRLLFA 343 (457) Q Consensus 271 ~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~-------~~~l~P~~~~ie~~l~~~ll~ 343 (457) +.+.+.+. +....+.+.||.+-+||...|-.......+ ++.|...++|+ ..-|+|.++.+-+.|-+..+. T Consensus 371 stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlN-ATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G 447 (694) T protein:vir:10 371 NTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG 447 (694) T ss_pred ecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 87776654 566777899999999999877433333332 11233334444 557889998888888777766 Q ss_pred ccccccceEEEecchhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCC-----CCceeeeccccccc Q lcl|Aclame:pro 344 ETADRFRFVKFNLDEIKRGAPKERMEL-------WSLGLQNGIYSIDEVRAAEDMTPLPDG-----LGEKYRVPLNLGEI 411 (457) Q Consensus 344 ~~~~~~~~~~f~~~~~~~~d~~~~~~~-------~~~~~~~g~~T~nE~R~~~G~~p~~~~-----~gd~~~~~~n~~~~ 411 (457) .... .+.|.++.|...+.++++++ ...+++.|+++++|+|.++.-+|--+- ..|.+-+|....-- T Consensus 448 ~idp---~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~ 524 (694) T protein:vir:10 448 AVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDID 524 (694) T ss_pred CCCC---cceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhh Confidence 5443 35667778877777766655 455778999999999999877653220 01111111100000 Q ss_pred cccccccccc-CCCccCCCCCCCCCCCCc--ccCCCCccccccccccCC Q lcl|Aclame:pro 412 GEEPEPEPAP-APPAIDPPAEEPADDEEP--DNAEGDPDEGETEDDDDA 457 (457) Q Consensus 412 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 457 (457) +.....+... .++..++++...+....+ .+.+...++.+..-.+-+ T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~ 573 (694) T protein:vir:10 525 GVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAA 573 (694) T ss_pred hhHhhhcCcccccccCCCCcccccccCCCcccccccccCccccCCCCcc Confidence 0000000000 000000000000000000 001111111000001111 No 141 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=99.37 E-value=6.6e-13 Score=87.37 Aligned_cols=436 Identities=16% Similarity=0.151 Sum_probs=219.2 Q ss_pred Cchhh-hhhccccccccccc------ccccc-cccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MGFWS-ALFGRGHSPALDAA------EGRAW-EPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg~~~-~l~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~ 71 (457) |.--+ |+-+|.+.....+. ..... .+.....-..++...+.+...+-.++. .+.++..+..|+++|+++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 43322 23333322111110 00000 110000001112222223333444554 78899999999999999999 Q ss_pred EEEEeccC-ceee--ecCc-----chhhhccCCCCC-CCHHHHHHHHHHHHHHcCCeEEEEEec-CCc------e-eEEE Q lcl|Aclame:pro 72 STYSKRGG-TRKE--IDTP-----EWLDFPNAEPGG-MGRIDILSQTVLSLLLQGNAFLAVRWA-GPN------I-AGLD 134 (457) Q Consensus 72 ~~~~~~~~-~~~~--~~~~-----~~~~l~~~pn~~-~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~------~-~~~~ 134 (457) ..-.-+.+ +... ++++ .........-.. +...++++.++.++-+-|++|+.+... .+. + .+.+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 87664422 2111 1111 222223333332 445689999999999999999998732 222 1 2233 Q ss_pred EeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEecc--CCccCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 135 VLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPG--MMLPGDFVGCSPISYARESIGLALAAQKY 212 (457) Q Consensus 135 ~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~--~~~~~~~~G~s~~~~~~~~i~~~~~~~~~ 212 (457) .+.+..+.-. .+.. ......+.........+++ +|. +.|....+-.||+.+++..+.......+. T Consensus 161 ~vt~~ei~~~----~~~~--------~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~ 227 (629) T protein:vir:86 161 ALTPEEVRAS----EKKT--------IIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) T ss_pred eechHHhhhc----cCce--------eeEcCCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhH Confidence 4444443210 1000 0001111222233333444 554 55556678999999999999888877777 Q ss_pred HHHHHHccCCcceEEecCCCCC----------------------HHHHHHHHHHHH----HHhccccccCc-ce-ecc-C Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMS----------------------EEGLARAREAWR----AANSGVDNAHR-VA-LLT-E 263 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~----------------------~e~~~~~~~~~~----~~~~~~~n~~~-~~-vl~-~ 263 (457) .....+.-.+-.|++.++..++ ....+++.+.+. ..+...+++.. ++ ++. . T Consensus 228 i~aaakSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P 307 (629) T protein:vir:86 228 IANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAP 307 (629) T ss_pred HHHHHHHHHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeec Confidence 7766666666666665543221 113344554444 44554444433 22 221 1 Q ss_pred c---ceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 264 G---AKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 264 g---~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~ 338 (457) + -+++.+.+. .-+.--+.+++..+..||....|||+.| |...++|-+++= +-...-++--|.|.+..|.++|+ T Consensus 308 ~E~i~~i~hlkf~~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAW--qI~dedvrlHI~P~l~~ic~AlT 385 (629) T protein:vir:86 308 GELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAW--QIGDEDVRLHILPPVEMLCEAIT 385 (629) T ss_pred hHHhcCeeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEE--EecccceeeecchHHHHHHHHHH Confidence 1 133334332 2334457899999999999999999876 665566655431 11112345569999999999999 Q ss_pred hhhcCccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC-----------Cce Q lcl|Aclame:pro 339 RLLFAETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL-----------GEK 401 (457) Q Consensus 339 ~~ll~~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~-----------gd~ 401 (457) +.+|.+.- ...|-+.||.+.|...-.+. +.+..+.+.|.+|-...|+.+|+.--.+.. .|. T Consensus 386 ~~~Lrp~Le~eGiDp~kYvvW~DaS~Lt~dPd~~--deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~ 463 (629) T protein:vir:86 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKT--DEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDR 463 (629) T ss_pred hhHHHHHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHh Confidence 88876332 23456678888765432222 333478889999999999999987533321 111 Q ss_pred eeecccc----ccc-ccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 402 YRVPLNL----GEI-GEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 402 ~~~~~n~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .-...++ +++ ..........++.+..+..+..++ .+. .+.+++++..+++++ T Consensus 464 V~~~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~-dE~---sga~~~~ep~te~d~ 520 (629) T protein:vir:86 464 VGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGD-EEA---SGASRREEPDTEDDA 520 (629) T ss_pred hhhCcchhhhhhhhhhhhcccccCccCCCCCccccCCCc-ccc---cCCCcCCCCCCCCCC Confidence 1111111 000 000000000111111222222221 111 112222333333333 No 142 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=99.36 E-value=1.7e-12 Score=85.06 Aligned_cols=436 Identities=16% Similarity=0.167 Sum_probs=216.0 Q ss_pred Cchhh-hhhcccccccccccccccccccchhhh---ccccc-ccCccccCHHHHhc-cHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWS-ALFGRGHSPALDAAEGRAWEPYDPSIY---NLGAT-ASSGERVTPHDALQ-VSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |.--+ |+.+|.+.....-......++.++.-. ...|. ..+.+...+-.++. ++.++-.+.+++++|+++.+..- T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~as 80 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIAS 80 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEEe Confidence 43321 222332221111111111122222111 11111 12223333334444 48889999999999999998776 Q ss_pred EeccC-cee----eecCcchhhhcc----CCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-C----cee-EEEEeccc Q lcl|Aclame:pro 75 SKRGG-TRK----EIDTPEWLDFPN----AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-P----NIA-GLDVLDPT 139 (457) Q Consensus 75 ~~~~~-~~~----~~~~~~~~~l~~----~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g----~~~-~~~~l~p~ 139 (457) .-+.+ +.. ...++....... -.-..+...++++.++.++-+-|+.|++++..+ + -+. ..+.+... T Consensus 81 ~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~~ 160 (629) T protein:vir:10 81 ELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTND 160 (629) T ss_pred eecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecHH Confidence 54422 211 112222222211 122335567899999999999999999987432 2 122 22233333 Q ss_pred eeEEEEcCCCcccceeeEEEEEeeecccceeEEeccc-e-EEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 KIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPR-D-VLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFF 217 (457) Q Consensus 140 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-e-vih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~ 217 (457) .+. .++.-.. .+ ....+....|..+ | ++.+=.+.|.....-.||+.+++..+.......+...... T Consensus 161 Ei~----~kg~g~~------~i--~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aa 228 (629) T protein:vir:10 161 EVK----NKGAGKT------DI--ELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNAS 228 (629) T ss_pred Hhc----cccCcee------EE--EcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHH Confidence 332 1111000 01 1111222233222 2 3333345555667889999999999988887777777766 Q ss_pred HccCCcceEEecCCCCC----------------------HHHHHHHHHHHH----HHhccccccCc-ceec-c-Cc---c Q lcl|Aclame:pro 218 RNGAMPGAVVEVPGTMS----------------------EEGLARAREAWR----AANSGVDNAHR-VALL-T-EG---A 265 (457) Q Consensus 218 ~n~~~~~~~~~~~~~~~----------------------~e~~~~~~~~~~----~~~~~~~n~~~-~~vl-~-~g---~ 265 (457) +.-.+-.|++.++..++ ....+.+...+. ..+...+++.. ++++ . .| - T Consensus 229 kSRL~gnGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~ 308 (629) T protein:vir:10 229 KSRLIGNGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQ 308 (629) T ss_pred HhHHhhCceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhc Confidence 66666667765543221 013344444443 33444443333 2222 1 11 2 Q ss_pred eeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC Q lcl|Aclame:pro 266 KFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFA 343 (457) Q Consensus 266 ~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~ 343 (457) +++.+.+. .-+.--+.+++..+..+|....|||+.| |...++|-+++= +-...-++--|.|.+..|.++|++.+|. T Consensus 309 ~ikhLkf~~eite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAW--qI~dedvrlHI~P~l~~ic~Ait~~~Lr 386 (629) T protein:vir:10 309 KIFHLKIGNEITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAW--QIGDEDVQLHIKPVMEVLCAAIYREVLV 386 (629) T ss_pred CeeeeeecCchhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeE--EecccceeeecchHHHHHHHHHHhHHHH Confidence 44455443 2233357889999999999999999886 665566655431 1111234555899999999999988875 Q ss_pred ccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee-----------eecc Q lcl|Aclame:pro 344 ETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKY-----------RVPL 406 (457) Q Consensus 344 ~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~-----------~~~~ 406 (457) +.- ...|-+.||.+.|...-.+. +-+..+.+.|.+|-...|+.+|+..-.+..-+.. ..+. T Consensus 387 p~L~~eGiDp~~Yvvw~DaS~Lt~dPd~~--deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P 464 (629) T protein:vir:10 387 ATLRAEGIDPDRYVLWYDASGLTVDPDKT--DEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADP 464 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCC Confidence 331 23456678887765432222 2334678899999999999999975443211111 0011 Q ss_pred ccc----cccccc-ccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 407 NLG----EIGEEP-EPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 407 n~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ++. ++.... ....-+.+...-.+. ++..+.+|+++.-++..++|+| T Consensus 465 ~Li~~~apll~~~l~~i~~P~p~~a~~~~-----~~~~~~~E~~~~~~e~~~e~dA 515 (629) T protein:vir:10 465 SLIKVLAPLLTDELAEIDWPEPPAALPPG-----EDDQADEEQDTTGSEPSTEDDA 515 (629) T ss_pred chhhhhhhhcCCccccccccCCCCcCCCC-----CcccCccccCCCCCCcCCCcch Confidence 111 111000 000000111111111 1111111222222233334444 No 143 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=99.36 E-value=8.2e-13 Score=86.85 Aligned_cols=436 Identities=16% Similarity=0.150 Sum_probs=219.0 Q ss_pred Cchhh-hhhccccccccccc------ccccc-cccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MGFWS-ALFGRGHSPALDAA------EGRAW-EPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg~~~-~l~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~ 71 (457) |.--+ |+-+|.+.....+. ..... .+.....-..++...+.+...+-.++. .+.++..+..|+++|+++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 43322 23333322111110 00000 110000001112222223333444554 78899999999999999999 Q ss_pred EEEEeccC-ceee--ecCc-----chhhhccCCCCC-CCHHHHHHHHHHHHHHcCCeEEEEEec-CCc------e-eEEE Q lcl|Aclame:pro 72 STYSKRGG-TRKE--IDTP-----EWLDFPNAEPGG-MGRIDILSQTVLSLLLQGNAFLAVRWA-GPN------I-AGLD 134 (457) Q Consensus 72 ~~~~~~~~-~~~~--~~~~-----~~~~l~~~pn~~-~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~------~-~~~~ 134 (457) ..-.-+.+ +... ++++ .........-.. +...++++.++.++-+-|++|+.+... .+. + .+.+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 87664422 2111 1111 222223333332 445689999999999999999998732 222 1 2233 Q ss_pred EeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEecc--CCccCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 135 VLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPG--MMLPGDFVGCSPISYARESIGLALAAQKY 212 (457) Q Consensus 135 ~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~--~~~~~~~~G~s~~~~~~~~i~~~~~~~~~ 212 (457) .+.+..+.-. .+.. ......+.........+++ +|. +.|....+-.||+.+++..+.......+. T Consensus 161 ~vt~~ei~~~----~~~~--------~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~ 227 (629) T protein:vir:99 161 ALTPEEVRAS----EKKT--------IIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) T ss_pred eechHHhhhc----cCce--------eEEcCCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhH Confidence 4444443210 0000 0000111222223333443 454 55556678999999999999888877777 Q ss_pred HHHHHHccCCcceEEecCCCCC----------------------HHHHHHHHHHHH----HHhccccccCc-ce-ecc-C Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMS----------------------EEGLARAREAWR----AANSGVDNAHR-VA-LLT-E 263 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~----------------------~e~~~~~~~~~~----~~~~~~~n~~~-~~-vl~-~ 263 (457) .....+.-.+-.|++.++..++ ....+++.+.+. ..+...+++.. ++ ++. . T Consensus 228 i~aaakSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P 307 (629) T protein:vir:99 228 IANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAP 307 (629) T ss_pred HHHHHHHHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeec Confidence 7776666666666665543221 113344554444 44544444433 22 221 1 Q ss_pred c---ceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 264 G---AKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 264 g---~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~ 338 (457) + -+++.+.+. .-+.--+.+++..+..||....|||+.| |...++|-+++= +-...-++--|.|.+..|.++|+ T Consensus 308 ~E~i~~i~hlkf~~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAW--qI~dedvrlHI~P~l~~ic~AlT 385 (629) T protein:vir:99 308 GELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAW--QIGDEDVRLHILPPVEMLCEAIT 385 (629) T ss_pred hHHhcCeeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEE--EecccceeeecchhHHHHHHHHH Confidence 1 133344332 2334457899999999999999999876 665566655431 11112345569999999999999 Q ss_pred hhhcCccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC-----------Cce Q lcl|Aclame:pro 339 RLLFAETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL-----------GEK 401 (457) Q Consensus 339 ~~ll~~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~-----------gd~ 401 (457) +.+|.+.- ...|-+.||.+.|...-.+. +.+..+.+.|.+|-...|+.+|+.--.+.. .|. T Consensus 386 ~~~Lrp~Le~eGiDp~kYvvW~DaS~Lt~dPd~~--deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~ 463 (629) T protein:vir:99 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKT--DEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDR 463 (629) T ss_pred hhHHHHHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHh Confidence 88876332 23456678888765433222 333478889999999999999987533311 111 Q ss_pred eeecccc----ccc-ccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 402 YRVPLNL----GEI-GEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 402 ~~~~~n~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .-...++ +++ ..........++.+..+..+..++ .+. .+.+.+++..+++++ T Consensus 464 V~~~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~-dE~---sga~~~~ep~te~d~ 520 (629) T protein:vir:99 464 VGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGD-EEA---SGASRREEPDTEDDA 520 (629) T ss_pred hhhCcchhhhhhhhhhhhcccccCccCCCCCccccCCCc-ccc---cCCCcCCCCCCCCCC Confidence 1111111 000 000000000111112222222221 111 111222233333332 No 144 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.35 E-value=1.8e-12 Score=85.01 Aligned_cols=437 Identities=13% Similarity=0.074 Sum_probs=194.5 Q ss_pred Cch--------------hhhhhcc-cc--ccccccc--ccccccc-cchhhhcccccccCccccCHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MGF--------------WSALFGR-GH--SPALDAA--EGRAWEP-YDPSIYNLGATASSGERVTPHDALQVSAVFASVR 60 (457) Q Consensus 1 Mg~--------------~~~l~~~-~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~ 60 (457) .+- +.+.|-- .. .+..... .+..+.. ....+..+.+...-|.+ ....+.++|-+++|+. T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~-~la~laQ~~eyr~~~~ 130 (695) T protein:vir:36 52 LNALDAAPVVEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPEYRAMHE 130 (695) T ss_pred ccccccccccCCCcccccceeceecccccCccccchhhhhhcccccccccchhhhccCcchHH-HHHHHhhccchhhHHH Confidence 111 1111110 00 0000000 0000000 00000000011111111 2345667899999999 Q ss_pred HHHHhhccCce-EEEEec------------cCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-c Q lcl|Aclame:pro 61 LLSETIATLPL-STYSKR------------GGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-A 126 (457) Q Consensus 61 ~ia~~ia~~p~-~~~~~~------------~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~ 126 (457) .|++.+..- | .+.... ++.....+.+....+..+-. .....+-+...+.+--++|-+.+++.- . T Consensus 131 ~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~e-rL~V~~~l~eaik~aRlfGGa~~~i~i~g 208 (695) T protein:vir:36 131 VLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE-RLRIRDAVRTTVIHDQAFGRAHPYFKIKG 208 (695) T ss_pred HHHHHhhcc-cceecccchhhhhhccccccccccccCchHHHHHHHHHHH-HHHHHHHHHHHHHhhccccceEEEEEecc Confidence 999998765 4 221110 00011111112222222211 222333344444555566666555421 1 Q ss_pred -----------------CCceeEEEEeccceeEEEEcCC-Cc---ccceeeEEEEEeeecccceeEEeccceEEEeccCC Q lcl|Aclame:pro 127 -----------------GPNIAGLDVLDPTKIHVHMVMV-DG---LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM 185 (457) Q Consensus 127 -----------------~g~~~~~~~l~p~~v~~~~~~~-~~---~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~ 185 (457) .|.++.+.+++|.+|++..... +. ..+.. ..|.+.. ..+-.+-++.+.... T Consensus 209 dd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP-~~y~V~G-------~kIH~SRL~~f~g~p 280 (695) T protein:vir:36 209 DDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKP-STWWMIG-------TEVHATRLHTIVSRP 280 (695) T ss_pred CccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCC-ceEEEec-------eEEeeeeEEEecCCC Confidence 2456668888888887653321 11 11111 1111111 123233333333222 Q ss_pred c------cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHH--HHHHHHHhccccccCc Q lcl|Aclame:pro 186 L------PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARA--REAWRAANSGVDNAHR 257 (457) Q Consensus 186 ~------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~n~~~ 257 (457) . ...+.|.|..+.+...|..............+.-.........-..+......++ +-++.+.+. +| .+ T Consensus 281 lPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~R--sn-~G 357 (695) T protein:vir:36 281 VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR--DN-RN 357 (695) T ss_pred chhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhc--Cc-cc Confidence 1 2245899999999999998888777777776543222211111111111111122 223334444 22 45 Q ss_pred ceecc-CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHH-------HHHHhhH Q lcl|Aclame:pro 258 VALLT-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT-------MFSLRPW 329 (457) Q Consensus 258 ~~vl~-~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~-------~~~l~P~ 329 (457) +.+++ +..+|.+.+.+.+.++ +....+.++||.+-+||...|-.......+ ++.|...++|+ ..-|+|. T Consensus 358 ~~llDk~~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlN-ATGE~D~rnYYD~I~s~Qe~~L~p~ 434 (695) T protein:vir:36 358 ILFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQQL 434 (695) T ss_pred eEEEecCCcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCccccc-ccchhhHHHHHHHHHHHHHHHHHHH Confidence 66677 4788999887776654 566777899999999999877433333332 11233333444 5578899 Q ss_pred HHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCC----- Q lcl|Aclame:pro 330 LERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMEL-------WSLGLQNGIYSIDEVRAAEDMTPLPDG----- 397 (457) Q Consensus 330 ~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~-------~~~~~~~g~~T~nE~R~~~G~~p~~~~----- 397 (457) ++.+-+.|-+..+..... .+.|.++.|...+.++++++ ...+++.|+++++|+|.++.-+|--+- T Consensus 435 L~rl~~ii~rS~~G~idp---di~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D 511 (695) T protein:vir:36 435 MNDVIVMIQLSLFGAVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) T ss_pred HHHHHHHHHHHhcCCCCC---cceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccc Confidence 988888887777665443 35667778887777766655 455778999999999999877653220 Q ss_pred CCceeeeccccccccccccccccc-CCCccCCCCCCCCCCCCc--ccCCCCccccccccccCC Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAP-APPAIDPPAEEPADDEEP--DNAEGDPDEGETEDDDDA 457 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 457 (457) ..|.+-+|....--+.....+... .++..++++...+..-.+ .+.+...++.+..-.+-+ T Consensus 512 ~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~ 574 (695) T protein:vir:36 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAA 574 (695) T ss_pred cccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCCCcccccccccCccccCCCCcc Confidence 011111111000000000000000 000000000000000000 000111111000001111 No 145 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=99.26 E-value=2e-11 Score=79.24 Aligned_cols=379 Identities=9% Similarity=-0.000 Sum_probs=177.2 Q ss_pred ccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 34 LGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSL 113 (457) Q Consensus 34 ~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ 113 (457) +.........-.........+...+|+.+++.+---.|++ .+ .. ....+..++.+ .........+..+. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~---~d-~~---~~~~~~~i~~~----N~~d~~~~~~~~~a 69 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTG---PD-GE---PDTRASRWWQA----NRLDSRQKLVWRMA 69 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceec---CC-Cc---hHHHHHHHHHh----cChhHHHHHHHHHH Confidence 0000000000000001123455667777776554334432 11 11 12223333333 23445677788999 Q ss_pred HHcCCeEEEEEecCCc-------eeEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeE--------------- Q lcl|Aclame:pro 114 LLQGNAFLAVRWAGPN-------IAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLG--------------- 171 (457) Q Consensus 114 l~~G~~~~~i~~~~g~-------~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~--------------- 171 (457) +.+|.+|+.+.++.+. ...+..++|.++.++.+...+........|.... .+..... T Consensus 70 ~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (434) T protein:vir:98 70 MAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDI-DGFGYARVFFDDTSFPYRTRER 148 (434) T ss_pred hhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEecc-CCceEEEEEEeCcEEEEEEeec Confidence 9999999998765322 2235678898887777644322111111111000 0000000 Q ss_pred ------------------------EeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 172 ------------------------WFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVV 227 (457) Q Consensus 172 ------------------------~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~ 227 (457) .|..--|+|+.+....+ ..|.|-++.+...++....+.--.....+-.+.|..++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~-~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i 227 (434) T protein:vir:98 149 TGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLG-EDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWI 227 (434) T ss_pred cccccccccccceecccccccccCCCCccceEEeccCCCcC-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhh Confidence 01112355554433222 36899999888888888877666666556566676666 Q ss_pred ecCC--CCCHHHHHHHHHHHHHHhccccccCcceecc-CcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccc Q lcl|Aclame:pro 228 EVPG--TMSEEGLARAREAWRAANSGVDNAHRVALLT-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDA 304 (457) Q Consensus 228 ~~~~--~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~ 304 (457) +... ...++. ......+ +.+. ...+.++.++ ++.++.++..+.. -.+++.++....+|+..-++|++.+|.. T Consensus 228 ~G~~~~~~~~~~-~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~~~~ 302 (434) T protein:vir:98 228 KGHKFAKRTDPA-TGMTVVD-QPFV--PSPSAVWASEGENTQFGQLDATDL-SGFLKEHASDVRDMLTISQTPTYLYATD 302 (434) T ss_pred cCCCcccccccc-cccchhh-hhhh--ccccccccCCCCCceEEEecCcch-HHHHHHHHHHHHHHhcccCCCHHHhccc Confidence 4211 111111 1111111 1111 1124455555 3567766664322 2377888899999999999999999853 Q ss_pred cccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhh---cCccc--cccceEEEecchhhhccHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 305 TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---FAETA--DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGI 379 (457) Q Consensus 305 ~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l---l~~~~--~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~ 379 (457) .++.|+..++.+...+... +.-..+.+...|.+.+ +.-.+ .....+.+.+......+..+.++++.++++.|+ T Consensus 303 -~~n~Sg~Al~~~~~~l~~k-~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~ 380 (434) T protein:vir:98 303 -LVNISADTIGALDILHVAK-VREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY 380 (434) T ss_pred -cCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC Confidence 3344443333322222222 1112222333332111 11111 122345566677788899999999999998886 Q ss_pred cCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccC-CCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 380 YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA-PPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 380 ~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) +..-+++++|+++-+ -+. +.+....+.... ......+....++.+ .+++...| T Consensus 381 -~~e~~~~~lg~~~~e---~~r---------~~~e~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~dg 434 (434) T protein:vir:98 381 -PLDVIAEELDESPAR---VRR---------IVAGAASQALLAASLLPAPGAPSAGNVP----DSGGAVDG 434 (434) T ss_pred -cHHHHHHhCCCCHHH---HHH---------HHHHHHHHHHHHHhhhccCCCCCCCCCC----cccCCCCC Confidence 666678888886521 111 111111100000 000000000000000 01111111 No 146 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=99.21 E-value=2.6e-10 Score=73.16 Aligned_cols=424 Identities=9% Similarity=-0.033 Sum_probs=196.8 Q ss_pred Cch---hhhhhccccc---ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGF---WSALFGRGHS---PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~---~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) +.. +.++..+... +...... ..+...... ...........-+..-+.++....+++..+.-+-+-|+++. T Consensus 38 ~~~~~~i~~~i~~~~~~~~~r~~~~~-~yY~g~~~~---i~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~ 113 (501) T protein:vir:96 38 VNNWELLKNFINHHKLRQAPRIQELL-DYARGENHD---VLKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVE 113 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCc---ccCccccCccccccceeecchHHHHHHHHhhhhcccCeeEe Confidence 222 2222111110 0110000 001000000 00000000000011124467778888888888888888775 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcc-cc Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGL-RR 153 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~-~~ 153 (457) ...+. ....+...+.+.............+..+++.+|.+|+.+.++..+...+..++|..+.++.+..... .. T Consensus 114 ~~~~~-----~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~~~~~~~ 188 (501) T protein:vir:96 114 YDDND-----DNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSI 188 (501) T ss_pred eCCcc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCCCCCceE Confidence 43321 1223334344433344566778889999999999999998876555667889999998887654221 11 Q ss_pred eeeEEEEEeeec-ccceeEEeccceEEEeccC----------C---------ccCCccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 KVFEAYDIDADG-NEVLLGWFTPRDVLHIPGM----------M---------LPGDFVGCSPISYARESIGLALAAQKYG 213 (457) Q Consensus 154 ~~~~~y~~~~~~-~~~~~~~~~~~evih~~~~----------~---------~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 213 (457) .....|...... .......+.++.|.++... + ..+...|.|.+..+...++....+..-. T Consensus 189 ~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~s~~ 268 (501) T protein:vir:96 189 AAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLNNIDGIGDYETELYLIDLYDSAESDT 268 (501) T ss_pred EEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecCCccCCCchhhhHHHHHHHHHHHHHH Confidence 111112111111 1111122333333333210 0 0123478899998888888888777777 Q ss_pred HHHHHccCCcceEEecCCCCC-HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 AHFFRNGAMPGAVVEVPGTMS-EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIAR 292 (457) Q Consensus 214 ~~~~~n~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~ 292 (457) ...+.....|-.++....... ++....++.. ........+.......+.++..+........+....+.+.+.|+. T Consensus 269 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~ 345 (501) T protein:vir:96 269 ANHMSDMADAILAIYGDLALPKGMQASDMKRT---RLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHI 345 (501) T ss_pred HHHHHHhcCceeeeecccccCcccchhhhhhc---CeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHH Confidence 777777777777666432222 1211211110 000111111112233444555555444455567777888899999 Q ss_pred HhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccc-cccceEEEecchhhh Q lcl|Aclame:pro 293 IFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETA-DRFRFVKFNLDEIKR 361 (457) Q Consensus 293 ~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~-~~~~~~~f~~~~~~~ 361 (457) .-++|..-.+... ++.|+..++.+. ...+..+|+..++.+...++.. .... .....+.+.+...+. T Consensus 346 ~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~--~~~~~~d~~~i~i~f~~~~p 422 (501) T protein:vir:96 346 FTNTPDMSDTNFS-GNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLV--NEFKDFDESLLKITFTPNLP 422 (501) T ss_pred HhCCcccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccccccceEEeCCCCC Confidence 9999976554332 333443332111 1223333333333333333221 1111 112235566677888 Q ss_pred ccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc-cccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 362 GAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPE-PAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 362 ~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 440 (457) .+..+.++.+.++. |+++..-+.+++++-. ++..+ +..+....... ........++.... .... T Consensus 423 ~n~~e~ad~~~kl~--g~iS~et~~~~l~~v~--D~~~E-------~~ri~~E~~~~~~~~~~~~~~~~~~~----~~~~ 487 (501) T protein:vir:96 423 KSLNEQVSILTGLG--GQVSQETALSLSGLVE--SPNEE-------LDKINKEMSEIDFKGYSNDFNEHVGK----YTDE 487 (501) T ss_pred cCHHHHHHHHHHHh--ccCchHHHHHhCCCCC--CHHHH-------HHHHHHHHHHhhccccccchhhcccc----cCCc Confidence 89999999998885 7898877878775422 21111 11111111100 00001111111111 1111 Q ss_pred cCCCCccccccccc Q lcl|Aclame:pro 441 NAEGDPDEGETEDD 454 (457) Q Consensus 441 ~~~~~~~~~~~~~~ 454 (457) ..++.++++|..-+ T Consensus 488 ~~e~~~d~~e~~~~ 501 (501) T protein:vir:96 488 VKETHTDDFEREYE 501 (501) T ss_pred CCCCCCCccccccC Confidence 22222333333222 No 147 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=99.19 E-value=4.6e-10 Score=71.78 Aligned_cols=426 Identities=10% Similarity=-0.044 Sum_probs=195.8 Q ss_pred Cchhhhhh-----------cccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGFWSALF-----------GRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~~~~l~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) |..+..+. .+.. .++.... .+.+...... ..-.......--+..-..+......++..+.-+ T Consensus 31 ~~~~~~~~~~~~~~i~~~i~~h~~~~~~rl~~l-~~yY~g~~~~---i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl 106 (502) T protein:vir:48 31 ADNLEELMVNNWELLKNFINHHKLRQAPRIQEL-LDYARGENHD---VLKSGRRKDNEMADKRAVHNYGRMISKFKTGYL 106 (502) T ss_pred ccchhhhccccHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcc---ccccccccccccccceeecchHHHHHHHHhhhh Confidence 22222111 1100 0000000 0001100000 000000000000011133567778888888888 Q ss_pred ccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEc Q lcl|Aclame:pro 67 ATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMV 146 (457) Q Consensus 67 a~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~ 146 (457) -+-|+++....+. ....+...+.+.............+..+++.+|.+|+.+.++..+-..+..++|..+.++.+ T Consensus 107 ~g~p~~~~~~d~~-----~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vyd 181 (502) T protein:vir:48 107 AGNPIRVEYDDNE-----DNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYD 181 (502) T ss_pred cccCeeEecCCcc-----chhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEc Confidence 8889877543321 11223333343333345667888899999999999999988754455678899999988776 Q ss_pred CCC-cccceeeEEEEEeeecc-cceeEEeccceEEEeccCC-------------------ccCCccccchhHHHHHHHHH Q lcl|Aclame:pro 147 MVD-GLRRKVFEAYDIDADGN-EVLLGWFTPRDVLHIPGMM-------------------LPGDFVGCSPISYARESIGL 205 (457) Q Consensus 147 ~~~-~~~~~~~~~y~~~~~~~-~~~~~~~~~~evih~~~~~-------------------~~~~~~G~s~~~~~~~~i~~ 205 (457) ... +........|....... ......+.++.++++.... ..+...|.|-+..+...|+. T Consensus 182 d~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa 261 (502) T protein:vir:48 182 NSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDL 261 (502) T ss_pred CCCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHH Confidence 432 21111112222111111 1112233444444333211 01234788999998899988 Q ss_pred HHHHHHHHHHHHHccCCcceEEecCCCCC-HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 206 ALAAQKYGAHFFRNGAMPGAVVEVPGTMS-EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 206 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) ...+..-....+.....|-.++....... ++....++.. ...+. ...+..-...++.++..+........+....+ T Consensus 262 ~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~ 338 (502) T protein:vir:48 262 YDSAESDTANHMSDMADAILAIYGDLALPQGMQASDMKRT-RLMQL--KPPKSADGKEGTVKAEYLTKSYDVSGAEAYKT 338 (502) T ss_pred HHHHHHHHHHHHHHhcCceeeeecCcccccccchhhhhhc-ceeec--cccccccccccCcceeEeeecCCHHHHHHHHH Confidence 88887777777777777877776543222 2222211111 00000 00011111234455555554444445566778 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEE Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKF 354 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f 354 (457) .+.+.|+..-++|..-.+.. .++.|+..++-. ....+...|.-.++.+...++..-- ........+.+ T Consensus 339 ~L~~~I~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~d~~~i~i 416 (502) T protein:vir:48 339 RLNKDIHVFTNTPDMSDNHF-SGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNE-FKDFDESRLKI 416 (502) T ss_pred HHHHHHHHHhCCCCcCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccccccceE Confidence 88999999999997655432 233344333211 1223333344444333333332110 11112234566 Q ss_pred ecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCC Q lcl|Aclame:pro 355 NLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPA 434 (457) Q Consensus 355 ~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (457) .+...+..|.++.++.+.++ .|+++..-+.+++++-. ++..+ +..+........ .........+..+ T Consensus 417 ~f~~~~p~d~~e~a~~~~kl--~g~iS~et~l~~l~~v~--D~~~E-------~~ri~~E~~~~~--~~~~~~~~~~~~~ 483 (502) T protein:vir:48 417 TFTPNLPKSLYEQVSILNDL--GGQVSQETALSLSGLVE--NPTEE-------LDKINEESSKID--FKGYPSYFYDNVG 483 (502) T ss_pred EeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCC--CHHHH-------HHHHHHHHHhhh--hhccccccccccc Confidence 67778888999999999888 48898877888876532 21111 111111110000 0000000000000 Q ss_pred CCCCcccCCCCccccccccc Q lcl|Aclame:pro 435 DDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~ 454 (457) .......++.+++.+.=.+ T Consensus 484 -~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 484 -KYTDEVKETHTDDFERVYE 502 (502) T ss_pred -ccCCCccCCCCcCcCCCCC Confidence 0000001111111111111 No 148 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=99.18 E-value=6.2e-10 Score=71.07 Aligned_cols=419 Identities=11% Similarity=0.008 Sum_probs=184.8 Q ss_pred Cchhhhhh------------------ccccccccccccccccccc------chhhhc-ccccccCccccCHHHHhccHHH Q lcl|Aclame:pro 1 MGFWSALF------------------GRGHSPALDAAEGRAWEPY------DPSIYN-LGATASSGERVTPHDALQVSAV 55 (457) Q Consensus 1 Mg~~~~l~------------------~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~~v 55 (457) |.+...+. .....+...... +.+... ...... .......... +..-+.++.. T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~YY~g~~~i~~~~~~~~~~~~~~~~~~~~--~~~ri~~n~~ 89 (503) T protein:vir:59 13 EELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGV-RYYMCENDIEKKRRTYYDAAGQQLVDDTK--TNNRTSHAWH 89 (503) T ss_pred HhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHH-HHhccccchhhccchhccccccccccccc--ccceeecchH Confidence 22211110 000000000000 000000 000000 0000000000 0011235667 Q ss_pred HHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEE Q lcl|Aclame:pro 56 FASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDV 135 (457) Q Consensus 56 ~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~ 135 (457) ..+++..+.-+.+-|+++...++. ....+..++ . | ........++.+.+.+|.+|+.+..+..+...+.. T Consensus 90 ~~ivd~~~~yl~g~~~~~~~~d~~-----~~~~l~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~ 159 (503) T protein:vir:59 90 KLFVDQKTQYLVGEPVTFTSDNKT-----LLEYVNELA-D-D---DFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVI 159 (503) T ss_pred HHHHHHHHhhhhcCCeeeccCcHH-----HHHHHHHHH-h-c---CHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEE Confidence 788898898888888876332211 111122222 1 2 45566777889999999999999877544456888 Q ss_pred eccceeEEEEcCCCc-ccceeeEEEEEeeecc--cceeEEeccceEEEeccC---------------------------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDG-LRRKVFEAYDIDADGN--EVLLGWFTPRDVLHIPGM---------------------------- 184 (457) Q Consensus 136 l~p~~v~~~~~~~~~-~~~~~~~~y~~~~~~~--~~~~~~~~~~evih~~~~---------------------------- 184 (457) ++|..+.++.+.... ........|......+ ......+.++.|.++... T Consensus 160 ~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (503) T protein:vir:59 160 FPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGW 239 (503) T ss_pred EccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccC Confidence 999998887765422 1111111121111100 011122333333332210 Q ss_pred ------CccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcc Q lcl|Aclame:pro 185 ------MLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRV 258 (457) Q Consensus 185 ------~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~ 258 (457) ...+...|.|-+..+...++....+.......+...+.|-.+++.-...+.+ .....+. ..++ T Consensus 240 ~~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~---~~~~~~~--------~~~~ 308 (503) T protein:vir:59 240 GRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPK---EFTANLR--------YHSV 308 (503) T ss_pred CccceEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCccccc---hhhhhhh--------cccc Confidence 0112346888888888888887777666666677777777766543222211 1222111 1334 Q ss_pred eeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH----------HHHHHHHHHHhh Q lcl|Aclame:pro 259 ALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE----------QNIAFTMFSLRP 328 (457) Q Consensus 259 ~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~----------~~~~~~~~~l~P 328 (457) +.++++.++..+........+....+.+.+.|....++|..-.+.. .++.|+..++. .....+..+|.- T Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~ 387 (503) T protein:vir:59 309 IKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETI-GGGATGPALENLYALLDLKANMAERKIRAGLRL 387 (503) T ss_pred eeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5566555555554443444445566666666666666664222111 12333332221 112223333333 Q ss_pred HHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccc Q lcl|Aclame:pro 329 WLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNL 408 (457) Q Consensus 329 ~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~ 408 (457) +++.|...++..-.... .....+.+.+...+..|..+.++.+.+++.+|+++...+.+++++-+ ++..+ + T Consensus 388 ~~~~i~~~~~~~~~~~~-~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~--d~~~E-------~ 457 (503) T protein:vir:59 388 FFWFFAEYLRNTGKGDF-NPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQ--DPEEE-------L 457 (503) T ss_pred HHHHHHHHHHhccCccc-ccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCC--CHHHH-------H Confidence 33333333332111111 11223667777888999999999999999999999988888876532 21111 0 Q ss_pred cccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 409 GEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ..+...............++ ..+.+.++.+.+...+....+..+-| T Consensus 458 ~ri~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 458 ARIEEEMNQYAEMQGNLLDD---EGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred HHHHHHHHHHHhhhccccCc---cCCCCCCCcCCCCCCcccCCCCCCcC Confidence 11111000000000100111 00111000111100011111111111 No 149 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=99.17 E-value=8.1e-11 Score=75.91 Aligned_cols=430 Identities=12% Similarity=0.018 Sum_probs=171.7 Q ss_pred Cchhhhhhccccccccccc-ccccccccchhhhcccccccCccccCHH---HHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAA-EGRAWEPYDPSIYNLGATASSGERVTPH---DALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) +-++++|..+......... ....+... .....-+..+..+ ......+...+|+.+++.+---.|.+ T Consensus 23 ~~~i~~L~~~~~~~~~r~~~l~~YY~G~-------~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~~a~rl~~~Gf~~--- 92 (504) T protein:vir:99 23 VDKVNGLYQQLVDRTPRNLLRASFYDGK-------YAIRQIGNLIPPEYLRTATVLGWSAKAVDTLARRCNLESFVW--- 92 (504) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcc-------ccchhccccccHHHHHHhhccCcHHHHHHHHHhhhccceeeC--- Confidence 4444444332211110000 00000000 0000000011111 11123444556666665543223321 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-Cce-eEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNI-AGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~-~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) .++. .....+..++...+ .......+..+.+++|++|+.+..+. |.+ .-+.+++|..+.++.+...+.... T Consensus 93 ~d~~---~~~~~l~~i~~~N~----ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~ 165 (504) T protein:vir:99 93 PDGD---YGSIGGPDVWDENF----FATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDS 165 (504) T ss_pred CCCC---hhhHHHHHHHHhcC----hhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeE Confidence 1111 11222334433322 34556788889999999999987764 443 346688999888777654332222 Q ss_pred eeEEEEEeeecccceeEEeccce------------------------EEEeccCCccCCccccchhH-HHHHHHHHHHHH Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPRD------------------------VLHIPGMMLPGDFVGCSPIS-YARESIGLALAA 209 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~e------------------------vih~~~~~~~~~~~G~s~~~-~~~~~i~~~~~~ 209 (457) ....+.............|.++. |+++.+....+..+|.|-+. .+...++..... T Consensus 166 a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~ 245 (504) T protein:vir:99 166 LLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKG 245 (504) T ss_pred EEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccchhhHHHHHHHHHHH Confidence 11111111110000111233333 34443332224456777543 333333333322 Q ss_pred HHHHHHHHHccCCcceEEecCC--CCCHH---HHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPG--TMSEE---GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~--~~~~e---~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) .--......-.+.|..++..-. ....+ ....++....+.+.-..+......-..+.++.++....-+ .|++.++ T Consensus 246 ~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~-~~~~~l~ 324 (504) T protein:vir:99 246 CIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQ-PHIEMLE 324 (504) T ss_pred HHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCccceeeecCCCChH-HHHHHHH Confidence 2221212222233443333211 11111 1112222222221111111111111223555555443222 4889999 Q ss_pred HHHHHHHHHhCCCHHHhccccc-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh------hcCccc---cccceEEE Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATN-STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL------LFAETA---DRFRFVKF 354 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~------ll~~~~---~~~~~~~f 354 (457) .....|+..-++|++.+|.... ++.|+..+..+...+... +.-..+.+.+.|.+. +..... .....+.+ T Consensus 325 ~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~k-a~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v 403 (504) T protein:vir:99 325 QIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAE-AEGATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDS 403 (504) T ss_pred HHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccee Confidence 9999999999999999997554 334443333332222222 233333333434321 111111 11233444 Q ss_pred ecchhhhccHHHHHHHHHHHHhCCCcC--HHH-HHHHhCCCCCCC-CCCceeeeccccccccccccccccc--CCCccCC Q lcl|Aclame:pro 355 NLDEIKRGAPKERMELWSLGLQNGIYS--IDE-VRAAEDMTPLPD-GLGEKYRVPLNLGEIGEEPEPEPAP--APPAIDP 428 (457) Q Consensus 355 ~~~~~~~~d~~~~~~~~~~~~~~g~~T--~nE-~R~~~G~~p~~~-~~gd~~~~~~n~~~~~~~~~~~~~~--~~~~~~~ 428 (457) .+......+..+.++++.++++.|... .-| +++++|+.+-+= .+.+....-.....++......... .....+. T Consensus 404 ~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 483 (504) T protein:vir:99 404 KFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQ 483 (504) T ss_pred EecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCc Confidence 456677788899999999999988632 233 567778864320 0000000000000111111111100 0111111 Q ss_pred CCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 429 PAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (457) +..+...+.........+.+| T Consensus 484 ~~~e~a~~~~~~~~~~p~~~~ 504 (504) T protein:vir:99 484 GAGEPPANEPPAALGRPTLVG 504 (504) T ss_pred CCCCCCCCCCCccCCCcccCC Confidence 111112222222222233333 No 150 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=99.17 E-value=7.3e-11 Score=76.15 Aligned_cols=437 Identities=12% Similarity=0.092 Sum_probs=217.6 Q ss_pred Cchhh-hhhcccccccccccc------cccc-cccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MGFWS-ALFGRGHSPALDAAE------GRAW-EPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg~~~-~l~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~ 71 (457) |.--+ |+-+|.+.....+.. .+.. .+.-..--..++...+.+...+-.++. ++.++-.+.+|+++|+++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 44321 233333322111110 1111 010000001122222333333334444 58899999999999999999 Q ss_pred EEEEeccCce-e-----eecCcchhhhccC----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-cCCc-------eeEE Q lcl|Aclame:pro 72 STYSKRGGTR-K-----EIDTPEWLDFPNA----EPGGMGRIDILSQTVLSLLLQGNAFLAVRW-AGPN-------IAGL 133 (457) Q Consensus 72 ~~~~~~~~~~-~-----~~~~~~~~~l~~~----pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~~g~-------~~~~ 133 (457) ..-.-+.+.. . .++++....+.+. .-..+...++++.++.++-+-|++|+.++. .... +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 7765442221 1 1222222222221 223355678999999999999999988653 2222 1333 Q ss_pred E-EeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEecc--ceEEEeccCCccCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 D-VLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTP--RDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQ 210 (457) Q Consensus 134 ~-~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~ 210 (457) | .+....+.. ..++.. . +....+ ..-.|.- +-++.+=.+.|....+-.||+.+++..+....... T Consensus 161 W~vvs~~Ei~~---~~~~~~-~------i~lPdG--~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t 228 (639) T protein:vir:10 161 WYAVTREEIKS---KAGETA-E------ISLPDG--KTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTT 228 (639) T ss_pred eeeeeHHHhcc---cCCCee-E------eecCCC--CCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhh Confidence 3 333333321 011100 0 001011 1111211 22333434556667788999999999998888777 Q ss_pred HHHHHHHHccCCcceEEecCCCCC-------------------------HHHHHHHHHHHH----HHhccccccCc-c-e Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPGTMS-------------------------EEGLARAREAWR----AANSGVDNAHR-V-A 259 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~~~~-------------------------~e~~~~~~~~~~----~~~~~~~n~~~-~-~ 259 (457) +......+.-.+-.|++.++..++ ....+.+...+. ..+...+++.. + + T Consensus 229 ~~i~aaakSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPi 308 (639) T protein:vir:10 229 RKIKNAAKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPL 308 (639) T ss_pred hHHHHHHHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeee Confidence 777777776666677766654332 012334444443 34444443333 2 2 Q ss_pred eccC----cceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 260 LLTE----GAKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERI 333 (457) Q Consensus 260 vl~~----g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~i 333 (457) ++.. .-+++.+.+. .-+.--+.+++..+..+|....|||+.| |. .++|-+++= +-...-++--|.|.+..| T Consensus 309 ia~~p~E~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl-~d~NHWsAW--qI~dedvrlHI~P~l~~i 385 (639) T protein:vir:10 309 VASVAAEHLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGM-SKGNHWSAW--AIGDEDVQLHIKPVMDLI 385 (639) T ss_pred eEeechHHhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeec-ccccceEEE--EecccceeeecchhHHHH Confidence 2221 1244555543 2344457899999999999999999887 55 445554421 111123455699999999 Q ss_pred HHHHHhhhcCccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc------- Q lcl|Aclame:pro 334 EAGFNRLLFAETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE------- 400 (457) Q Consensus 334 e~~l~~~ll~~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd------- 400 (457) .++|++.+|.+.- ...|-+.||.+.|...-.+. +.+..+.+.|.+|-.-.|+.+|+..-.+..-+ T Consensus 386 cdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~--deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~ 463 (639) T protein:vir:10 386 CQAIYNDILTPLLAREGIDPTKYILWYDASGLTSDPDLS--DEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCRE 463 (639) T ss_pred HHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHH Confidence 9999998876332 23456678888775433222 33347888999999889999998654321100 Q ss_pred ----eeeeccc----cccccccccc-ccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 401 ----KYRVPLN----LGEIGEEPEP-EPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 401 ----~~~~~~n----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+-.+.+ ++++.....+ ...++++...+..++..++++.+ +..+..+-+++|++ T Consensus 464 ~A~~~V~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~---ga~~~~ePdte~~~ 526 (639) T protein:vir:10 464 FAADVVTKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDS---GARQQREPQTEDER 526 (639) T ss_pred HHHHHhcCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCccccc---CCCCCcCCCccccc Confidence 0000111 1111111100 01111221122222222222222 22222222232222 No 151 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=99.17 E-value=7.3e-11 Score=76.15 Aligned_cols=437 Identities=12% Similarity=0.092 Sum_probs=217.6 Q ss_pred Cchhh-hhhcccccccccccc------cccc-cccchhhhcccccccCccccCHHHHhc-cHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MGFWS-ALFGRGHSPALDAAE------GRAW-EPYDPSIYNLGATASSGERVTPHDALQ-VSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg~~~-~l~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~~p~ 71 (457) |.--+ |+-+|.+.....+.. .+.. .+.-..--..++...+.+...+-.++. ++.++-.+.+|+++|+++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 44321 233333322111110 1111 010000001122222333333334444 58899999999999999999 Q ss_pred EEEEeccCce-e-----eecCcchhhhccC----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-cCCc-------eeEE Q lcl|Aclame:pro 72 STYSKRGGTR-K-----EIDTPEWLDFPNA----EPGGMGRIDILSQTVLSLLLQGNAFLAVRW-AGPN-------IAGL 133 (457) Q Consensus 72 ~~~~~~~~~~-~-----~~~~~~~~~l~~~----pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-~~g~-------~~~~ 133 (457) ..-.-+.+.. . .++++....+.+. .-..+...++++.++.++-+-|++|+.++. .... +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 7765442221 1 1222222222221 223355678999999999999999988653 2222 1333 Q ss_pred E-EeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEecc--ceEEEeccCCccCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 D-VLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTP--RDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQ 210 (457) Q Consensus 134 ~-~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~ 210 (457) | .+....+.. ..++.. . +....+ ..-.|.- +-++.+=.+.|....+-.||+.+++..+....... T Consensus 161 W~vvs~~Ei~~---~~~~~~-~------i~lPdG--~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t 228 (639) T protein:vir:97 161 WYAVTREEIKS---KAGETA-E------ISLPDG--KTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTT 228 (639) T ss_pred eeeeeHHHhcc---cCCCee-E------eecCCC--CCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhh Confidence 3 333333321 011100 0 001011 1111211 22333434556667788999999999998888777 Q ss_pred HHHHHHHHccCCcceEEecCCCCC-------------------------HHHHHHHHHHHH----HHhccccccCc-c-e Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPGTMS-------------------------EEGLARAREAWR----AANSGVDNAHR-V-A 259 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~~~~-------------------------~e~~~~~~~~~~----~~~~~~~n~~~-~-~ 259 (457) +......+.-.+-.|++.++..++ ....+.+...+. ..+...+++.. + + T Consensus 229 ~~i~aaakSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPi 308 (639) T protein:vir:97 229 RKIKNAAKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPL 308 (639) T ss_pred hHHHHHHHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeee Confidence 777777776666677766654332 012334444443 34444443333 2 2 Q ss_pred eccC----cceeeeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccccccccchHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 260 LLTE----GAKFSKVAMS-PDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFSLRPWLERI 333 (457) Q Consensus 260 vl~~----g~~~~~~~~s-~~d~~~~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~i 333 (457) ++.. .-+++.+.+. .-+.--+.+++..+..+|....|||+.| |. .++|-+++= +-...-++--|.|.+..| T Consensus 309 ia~~p~E~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl-~d~NHWsAW--qI~dedvrlHI~P~l~~i 385 (639) T protein:vir:97 309 VASVAAEHLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGM-SKGNHWSAW--AIGDEDVQLHIKPVMDLI 385 (639) T ss_pred eEeechHHhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeec-ccccceEEE--EecccceeeecchhHHHH Confidence 2221 1244555543 2344457899999999999999999887 55 445554421 111123455699999999 Q ss_pred HHHHHhhhcCccc------cccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc------- Q lcl|Aclame:pro 334 EAGFNRLLFAETA------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE------- 400 (457) Q Consensus 334 e~~l~~~ll~~~~------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd------- 400 (457) .++|++.+|.+.- ...|-+.||.+.|...-.+. +.+..+.+.|.+|-.-.|+.+|+..-.+..-+ T Consensus 386 cdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~--deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~ 463 (639) T protein:vir:97 386 CQAIYNDILTPLLAREGIDPTKYILWYDASGLTSDPDLS--DEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCRE 463 (639) T ss_pred HHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCc--HHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHH Confidence 9999998876332 23456678888775433222 33347888999999889999998654321100 Q ss_pred ----eeeeccc----cccccccccc-ccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 401 ----KYRVPLN----LGEIGEEPEP-EPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 401 ----~~~~~~n----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+-.+.+ ++++.....+ ...++++...+..++..++++.+ +..+..+-+++|++ T Consensus 464 ~A~~~V~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~---ga~~~~ePdte~~~ 526 (639) T protein:vir:97 464 FAADVVTKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDS---GARQQREPQTEDER 526 (639) T ss_pred HHHHHhcCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCccccc---CCCCCcCCCccccc Confidence 0000111 1111111100 01111221122222222222222 22222222232222 No 152 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=99.17 E-value=4.7e-10 Score=71.70 Aligned_cols=425 Identities=12% Similarity=0.008 Sum_probs=193.8 Q ss_pred Cc--hhhhhhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MG--FWSALFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg--~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |. .+.++..+.. .+...... ..+...-.. +..........-+..-+.+......++..+.-+-+-|+++.. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~-~Yy~g~~~i---~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:96 40 QNVNEVSKYIEHHMDYQRPRLKVLS-DYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHH-HHhcccCcc---ccccCcCcccccCcceeecchHHHHHHHHHhhhccCCceeec Confidence 11 1111111100 00000000 000000000 000000000000011123466677788888888888887643 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) ..+ .....+...............+..+++.+|.+|..+..+..+...+..++|..+.++.+......... T Consensus 116 ~~~---------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~ 186 (511) T protein:vir:96 116 DDK---------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIA 186 (511) T ss_pred Cch---------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEE Confidence 221 12222333333334566778888999999999999988765556788899999988776543221111 Q ss_pred -eEEEEEeeecc-c----ceeEEeccceEEEeccCC-------------------------ccCCccccchhHHHHHHHH Q lcl|Aclame:pro 156 -FEAYDIDADGN-E----VLLGWFTPRDVLHIPGMM-------------------------LPGDFVGCSPISYARESIG 204 (457) Q Consensus 156 -~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~-------------------------~~~~~~G~s~~~~~~~~i~ 204 (457) ...|......+ . .....+.++.|.++.... ..+...|.|-+..+...|+ T Consensus 187 ~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liD 266 (511) T protein:vir:96 187 GVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLID 266 (511) T ss_pred EEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHH Confidence 11121111000 0 011123444444432110 0112368899999988888 Q ss_pred HHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhcccc-ccCcceeccCcceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 205 LALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVD-NAHRVALLTEGAKFSKVAMSPDEAQFLQTR 283 (457) Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~ 283 (457) ....+..-....+.....|-.++......+.++.....+.-........ -.+...-..++.++..+........+.... T Consensus 267 a~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:96 267 LYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHHHhhCceeeeecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 8887777777777777777777765444444433322221110000000 001111233455666665554555667788 Q ss_pred HHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEE Q lcl|Aclame:pro 284 QFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVK 353 (457) Q Consensus 284 ~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~ 353 (457) +.+.+.|...-++|..-.+... ++.|+..+.-.. ...+..+|.-.++.|...+..+--.........+. T Consensus 347 ~~L~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~ 425 (511) T protein:vir:96 347 DRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVR 425 (511) T ss_pred HHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccce Confidence 8889999999999986543322 333443222111 22333344444444433333221111111222456 Q ss_pred EecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCC Q lcl|Aclame:pro 354 FNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEP 433 (457) Q Consensus 354 f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (457) +.+..-+..|..+.++.+.++ .|+++.-.+.+++++-.-+..+.+ .+...................... T Consensus 426 ~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~---------ri~~E~~~~~~~~~~~~~~~~~~~ 494 (511) T protein:vir:96 426 YVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVK---------KIEEDEKESIKKAQKGIYKDPRDI 494 (511) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHH---------HHHHHHHHHHHHHhhccccCCCCC Confidence 666777788899999998887 589998888888865332111111 111111110000000010001111 Q ss_pred CCCCCcccCCCCccccc Q lcl|Aclame:pro 434 ADDEEPDNAEGDPDEGE 450 (457) Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (457) .+++.++..+...++++ T Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 495 NDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCcccccccccC Confidence 11111111111111111 No 153 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=99.16 E-value=1.9e-11 Score=79.42 Aligned_cols=415 Identities=14% Similarity=0.101 Sum_probs=170.5 Q ss_pred Cchhhhhhccccccc--ccccccccccccchhhhcccccccCccccCH---HHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA--LDAAEGRAWEPYDPSIYNLGATASSGERVTP---HDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) +-++++|........ .... .+.+...- .....+..+.. ..-....+...+|+.+++.+---++.+-. T Consensus 10 ~~~i~~L~~~~~~~~~r~~~~-~~Yy~g~~-------~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~~ 81 (488) T protein:vir:23 10 EKLRDQLLDAFENKQNELKSS-KAYYDAER-------RPDAIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFRIPS 81 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhccc-------chhhcCcccchhhhhhhhhcchHHHHHHHHHHhhhccceeccC Confidence 434444433211111 0000 00111000 00000111111 11123455566777777655433443321 Q ss_pred eccCce----eeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--------CceeEEEEeccceeEE Q lcl|Aclame:pro 76 KRGGTR----KEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--------PNIAGLDVLDPTKIHV 143 (457) Q Consensus 76 ~~~~~~----~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--------g~~~~~~~l~p~~v~~ 143 (457) ..+... .......+..++.+ ....+....+..+++.+|.+|+.+..+. .....+.+++|..+.+ T Consensus 82 ~~~~~~~~~~d~~~~~~l~~i~~~----N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~ 157 (488) T protein:vir:23 82 ANGEEPESGGENDPASELWDWWQA----NNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPLIRVEPPTALYA 157 (488) T ss_pred CcccccccccchhHHHHHHHHHHh----cChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcceEEEeccceeEE Confidence 111000 00011122233322 2345667778899999999999886542 1223456788888877 Q ss_pred EEcCCCcccceeeEEEEEeeeccc-ceeEEeccc-------------------------eEEEeccCCccCCccccchhH Q lcl|Aclame:pro 144 HMVMVDGLRRKVFEAYDIDADGNE-VLLGWFTPR-------------------------DVLHIPGMMLPGDFVGCSPIS 197 (457) Q Consensus 144 ~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~-------------------------evih~~~~~~~~~~~G~s~~~ 197 (457) +.+...+........| +....+. .....|.++ -|+++++.......+|.|-+. T Consensus 158 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~ 236 (488) T protein:vir:23 158 EVDPRTRKVLYAIRAI-YGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEIS 236 (488) T ss_pred EEecCCCceEEEEEEE-EecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchh Confidence 7664433221111111 1111000 011122222 244554433334557777664 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH--HHHHHHHHHhccccccCcceeccCc--ceeeeccC Q lcl|Aclame:pro 198 Y-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA--RAREAWRAANSGVDNAHRVALLTEG--AKFSKVAM 272 (457) Q Consensus 198 ~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~~~n~~~~~vl~~g--~~~~~~~~ 272 (457) . +...++....+..-......-.+.|..+++.- ..++...+ .-..-+.. ..++++.+++| .++.++.. T Consensus 237 ~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~-~~~~~~~~~~~~~~~~~~------~~~~v~~~~~g~~~~~~q~~~ 309 (488) T protein:vir:23 237 PELRSVTDAAAQILMNMQGTANLMAIPQRLIFGA-KPEELGINAETGQRMFDA------YMARILAFEGGEGAHAEQFSA 309 (488) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCC-Ccccccccccccchhhhh------hhhhhccCCCCCCceeEecCC Confidence 2 33333333333322222222233444433311 11111000 00111111 12456666655 45656554 Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHH----------HHHHhhHHHHHHHHHHhhhc Q lcl|Aclame:pro 273 SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFT----------MFSLRPWLERIEAGFNRLLF 342 (457) Q Consensus 273 s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~----------~~~l~P~~~~ie~~l~~~ll 342 (457) +.. -.+++..+....+|+..-++|+..+|.......|+..+..+...+. ...|.-+++.+... . T Consensus 310 ~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~-----~ 383 (488) T protein:vir:23 310 AEL-RNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKM-----V 383 (488) T ss_pred CCh-HHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h Confidence 332 3478888888999999999999999875543334433332222222 22222222222111 1 Q ss_pred Cccc--cccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc Q lcl|Aclame:pro 343 AETA--DRFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPE 418 (457) Q Consensus 343 ~~~~--~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~ 418 (457) ...+ .....+.+.+......+..+.++.+.+++++| +++..-+++++|+-+-+-...+.. .+.+ T Consensus 384 ~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~------------~~~~ 451 (488) T protein:vir:23 384 KGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQW------------LEQD 451 (488) T ss_pred cCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHH------------HHHH Confidence 1111 11233445556666778889999999999876 788888899998754321111100 0000 Q ss_pred cccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 419 PAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ........+.......+ ....++...++..+..++ T Consensus 452 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~ 486 (488) T protein:vir:23 452 QKQGLGLIGSLYGASTP----EGKPGEAPVGEPPAPEPD 486 (488) T ss_pred HHHHHHHHHHHhccCCC----cccCCCCCCCCCCCCCCC Confidence 00000000000000000 000011111111111111 No 154 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=99.15 E-value=1.5e-10 Score=74.42 Aligned_cols=425 Identities=10% Similarity=-0.008 Sum_probs=192.7 Q ss_pred Cchhhhhhccccc---ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEec Q lcl|Aclame:pro 1 MGFWSALFGRGHS---PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKR 77 (457) Q Consensus 1 Mg~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 77 (457) +..+.++..+... +..... .+.+...-.. +..........-...-+.+......++..+.-+-+-|+++.... T Consensus 42 ~~~i~~~i~~~~~~~~~r~~~l-~~YY~g~~~i---~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d 117 (512) T protein:vir:97 42 INEVSKYIEHHMDYQRPRLKVL-SDYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQCQDDD 117 (512) T ss_pred HHHHHHHHHHHHHhhHHHHHHH-HHHhcccCcc---ccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeccCC Confidence 2222222211110 000000 0000000000 00000000000001112346667788888888888888764322 Q ss_pred cCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee-e Q lcl|Aclame:pro 78 GGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV-F 156 (457) Q Consensus 78 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~-~ 156 (457) + .....+...............+..+++.+|.+|..+..+..+...+..++|..+.++.+......... . T Consensus 118 ~---------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~v 188 (512) T protein:vir:97 118 K---------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (512) T ss_pred h---------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 1 11222333333334556777888999999999999988765556788899999988876543221111 1 Q ss_pred EEEEEeeecc-----cceeEEeccceEEEeccCC-------------------------ccCCccccchhHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGN-----EVLLGWFTPRDVLHIPGMM-------------------------LPGDFVGCSPISYARESIGLA 206 (457) Q Consensus 157 ~~y~~~~~~~-----~~~~~~~~~~evih~~~~~-------------------------~~~~~~G~s~~~~~~~~i~~~ 206 (457) ..|......+ ......+.++.|.++.... ..+...|.|-+..+...++.. T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~ 268 (512) T protein:vir:97 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (512) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHH Confidence 1121111100 0011234444444432110 011246889999888888888 Q ss_pred HHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhcccc--ccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 207 LAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVD--NAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 207 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) ..+..-....+.....|-.++......+.+.....+....-...... +.....-.++|.++..+........+....+ T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~ 348 (512) T protein:vir:97 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKD 348 (512) T ss_pred HHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHH Confidence 87777666667777777777765444444433333222111111111 1111112345666666665545555667788 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEE Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKF 354 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f 354 (457) .+.+.|+..-++|..-.+... ++.|+..+.-+ ....+..+|.-.++.|...+...--.........+.+ T Consensus 349 ~L~~~I~~~s~~p~~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~ 427 (512) T protein:vir:97 349 RLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRY 427 (512) T ss_pred HHHHHHHHHhCCcccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceE Confidence 888999999999886554322 33344322211 1122233333333333332221111111111223556 Q ss_pred ecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCC Q lcl|Aclame:pro 355 NLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPA 434 (457) Q Consensus 355 ~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (457) .+..-+..+..+.++.+.++. |+++..-+++++++-.-+..+.+ .+......... ...........+ T Consensus 428 ~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~e---------ri~~E~~~~~~--~~~~~~~~~~~~ 494 (512) T protein:vir:97 428 VYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVK---------KIEEDEKESIK--KAQKGIYKDPRD 494 (512) T ss_pred EeCCCCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHH---------HHHHHHHHHHH--HHhhcccCCCCC Confidence 666777888899999888874 88988778888765321111111 11111110000 000001111111 Q ss_pred CCCCcccCCCCccccccccc Q lcl|Aclame:pro 435 DDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~ 454 (457) .+..+. +.+.++.+++.+ T Consensus 495 ~~~~~~--~~~~~~~~~~~~ 512 (512) T protein:vir:97 495 INDDEQ--DDDTKDTVDKKE 512 (512) T ss_pred CCCCCC--CCCccccccccC Confidence 111111 111111111111 No 155 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=99.15 E-value=7.4e-10 Score=70.65 Aligned_cols=424 Identities=10% Similarity=-0.019 Sum_probs=195.2 Q ss_pred Cchhhhhhc---ccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSALFG---RGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~l~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) +..++.+.+ +.. .++..... +.+..... ...........--+..-+.++....+++..+.-+-+-|+++. T Consensus 38 ~~~~~~l~~~i~~~~~~~~~r~~~l~-~yY~g~~~---~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~ 113 (501) T protein:vir:27 38 VNNWELLKNFINHHKLRQAPRIQELL-DYARGENH---DVLQFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVE 113 (501) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc---cccccCccCccccccceeccchHHHHHHHHhhhhcccCeeEe Confidence 222222211 110 00111000 01110000 000000000000011123467778888988888888888775 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccc- Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRR- 153 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~- 153 (457) ...++. ...+...+.+.............+..+++.+|.+|+.+..+..+-..+..++|..+.++.+....... T Consensus 114 ~~d~~~-----~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~~~~~~~ 188 (501) T protein:vir:27 114 YDDNDN-----NSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNSLEDNSI 188 (501) T ss_pred cCCccc-----hHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCCCCCceE Confidence 433211 12222333333333346678888999999999999999887544456788999999887765422211 Q ss_pred eeeEEEEEeeecc-cceeEEeccceEEEeccC----------C---------ccCCccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 KVFEAYDIDADGN-EVLLGWFTPRDVLHIPGM----------M---------LPGDFVGCSPISYARESIGLALAAQKYG 213 (457) Q Consensus 154 ~~~~~y~~~~~~~-~~~~~~~~~~evih~~~~----------~---------~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 213 (457) .....|......+ ......+.++.|.++... + ..+...|.|.+..+...++....+..-. T Consensus 189 ~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~ 268 (501) T protein:vir:27 189 AAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLNNVDGIGDYETELYLIDLYDSAESDT 268 (501) T ss_pred EEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecCCCCCCCchhhhHHHHHHHHHHHHHH Confidence 1111221111111 111122333333322210 0 1123478899999888888888777777 Q ss_pred HHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 AHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIAR 292 (457) Q Consensus 214 ~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~ 292 (457) ...+.....|-.++..... ..++....++.. ........+.......+.++..+.....+..+....+.+.+.|+. T Consensus 269 ~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~ 345 (501) T protein:vir:27 269 ANHMSDMADAILAIYGDLALPKGMQASDMKRT---RLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHI 345 (501) T ss_pred HHHHHHhcCceeeeecCccCCcccchhhhhhc---CceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHH Confidence 7777777777776654322 122222222211 001111112222244455666665555555566778888899999 Q ss_pred HhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCcc-ccccceEEEecchhhh Q lcl|Aclame:pro 293 IFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAET-ADRFRFVKFNLDEIKR 361 (457) Q Consensus 293 ~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~-~~~~~~~~f~~~~~~~ 361 (457) .-++|..-.+.. .++.|+..++-+. ...+...|.-+++.+...++.. ... ......+.+.+...+. T Consensus 346 ~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~--~~~~~~d~~~i~v~f~~~~p 422 (501) T protein:vir:27 346 FTNIPDMSDTNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLV--NEFKDFDESLLKITFTPNLP 422 (501) T ss_pred HhCCcccCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccccccccceEEeCCCCC Confidence 999997554432 2333443222111 1222333333333333333211 111 1122345666778888 Q ss_pred ccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccc-ccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 362 GAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEP-APAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 362 ~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 440 (457) .+..+.++.+.++ .|+++..-+.+++++-.-+..+.+ .+........ ...++.... ..+....++. T Consensus 423 ~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~e---------ri~~E~~e~~~~~~~~~~~~--~~~~~~d~~~ 489 (501) T protein:vir:27 423 KSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELD---------KINKEVSEIDFKGYSNDFNE--HVGKYTDEVK 489 (501) T ss_pred cCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHH---------HHHHHHHhhhHhhhcCcccc--ccccccCCCC Confidence 8999999998887 488988778877754321111111 1111111000 001111111 0011111111 Q ss_pred cCCCCccccccc Q lcl|Aclame:pro 441 NAEGDPDEGETE 452 (457) Q Consensus 441 ~~~~~~~~~~~~ 452 (457) +..+|..+...+ T Consensus 490 ~~~~d~~e~~~~ 501 (501) T protein:vir:27 490 ETHTDDFERAYE 501 (501) T ss_pred CCccccccccCC Confidence 111222222222 No 156 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=99.14 E-value=4.3e-10 Score=71.92 Aligned_cols=425 Identities=10% Similarity=0.001 Sum_probs=191.5 Q ss_pred Cc--hhhhhhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MG--FWSALFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg--~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) +. .+.++..+.. .+...... ..+...-.. +.........--+..-+.+......++..+.-+-+-|+++.. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~-~Yy~g~~~i---l~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:93 40 QNVNEVSKYIEHHMDYQRPRLKVLS-DYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHH-HHhcccCcc---ccccCcCcccccCcceeecchHHHHHHHHhhhhcccCeeecc Confidence 00 0111111100 00000000 000000000 000000000000001123466677888888888788887632 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) ..+ .....+...............+..+++.+|.+|..+..+..+...+..++|..+.++.+......... T Consensus 116 ~d~---------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~ 186 (511) T protein:vir:93 116 DDK---------DVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIA 186 (511) T ss_pred CCh---------HHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEE Confidence 221 12223333333334566778888999999999999988765556678899999988776543221111 Q ss_pred -eEEEEEeeecc-c----ceeEEeccceEEEeccCC-------------------------ccCCccccchhHHHHHHHH Q lcl|Aclame:pro 156 -FEAYDIDADGN-E----VLLGWFTPRDVLHIPGMM-------------------------LPGDFVGCSPISYARESIG 204 (457) Q Consensus 156 -~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~-------------------------~~~~~~G~s~~~~~~~~i~ 204 (457) ...|......+ . .....+.++.|.+++... ..+...|.|-+..+...++ T Consensus 187 ~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liD 266 (511) T protein:vir:93 187 GVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLID 266 (511) T ss_pred EEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHH Confidence 11121111000 0 011233444444432211 0122368888998888888 Q ss_pred HHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhcccc-ccCcceeccCcceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 205 LALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVD-NAHRVALLTEGAKFSKVAMSPDEAQFLQTR 283 (457) Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~ 283 (457) ....+..-....+.....|-.++......+.+.....++.-.-...... -.+...-..++.++..+........+.... T Consensus 267 a~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 346 (511) T protein:vir:93 267 LYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHHHhhCcceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 8887776666667777777777665444444433322221110000000 001112234456666665544555567778 Q ss_pred HHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEE Q lcl|Aclame:pro 284 QFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVK 353 (457) Q Consensus 284 ~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~ 353 (457) +.+.+.|+..-++|..-.+.. +++.|+..+.-. ....+..+|...++.|...+..+--.........+. T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~ 425 (511) T protein:vir:93 347 DRLNSDIHMFTNTPNMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVR 425 (511) T ss_pred HHHHHHHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccce Confidence 888899999999987544322 234444322211 122333344444444433333211111111222356 Q ss_pred EecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCC Q lcl|Aclame:pro 354 FNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEP 433 (457) Q Consensus 354 f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (457) +.+...+..+..+.++.+.++ .|+++.--+++++++-+-+..+. ..+............... ..... T Consensus 426 ~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~---------~ri~~E~~~~~~~~~~~~--~~~~~ 492 (511) T protein:vir:93 426 YVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEV---------KKIEEDEKESIKKAQKGI--YKDPR 492 (511) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHH---------HHHHHHHHHHHHHHhhhc--ccCCC Confidence 666777888999999998887 48898877888875532211111 111111111000000000 00000 Q ss_pred CCCCCcccCCCCccccccccc Q lcl|Aclame:pro 434 ADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~ 454 (457) +.++.+. +++.++.+++.+ T Consensus 493 ~~~~~~~--~~~~~~~~~~~~ 511 (511) T protein:vir:93 493 DINDDEQ--DDDTKDTVDKKE 511 (511) T ss_pred CCCCCCC--CCcccccccccC Confidence 0000000 111111111111 No 157 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=99.13 E-value=2e-11 Score=79.25 Aligned_cols=406 Identities=11% Similarity=0.020 Sum_probs=179.6 Q ss_pred Cchhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) +-++.+|........... .....+...-. .... +.......-.......+.+...+|+..+..+-.-|+.+....+ T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~-i~~~-~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~~d- 83 (456) T protein:vir:79 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAP-LPEL-TRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD- 83 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-hhhc-CcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecCCCCC- Confidence 333333332211110000 00001110000 0000 0000000001111223457788999999888888887532221 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) .. ....+..++.+. ....+...++.+++.+|.+|+.+..+..+...+..++|..+.+..+............| T Consensus 84 ~~---~~~~~~~~~~~n----~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~ 156 (456) T protein:vir:79 84 SD---LALRARRIWRDN----RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRW 156 (456) T ss_pred cc---HHHHHHHHHHhc----ChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEE Confidence 11 112233444332 23456677889999999999988776433346778889888877765433221111111 Q ss_pred EEeeecccceeEEec-------------------------------cceEEEeccCC---ccCCccccchhHHHHHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFT-------------------------------PRDVLHIPGMM---LPGDFVGCSPISYARESIGL 205 (457) Q Consensus 160 ~~~~~~~~~~~~~~~-------------------------------~~evih~~~~~---~~~~~~G~s~~~~~~~~i~~ 205 (457) .............+. ..++-|.-... +.....|+|-+..+...++. T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~ 236 (456) T protein:vir:79 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR 236 (456) T ss_pred EEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHH Confidence 110000000000000 01111110000 01123577888877766665 Q ss_pred HHHHHHHHHHHHHccCCcceEEecCCC---CCHHHHHH--HHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHH Q lcl|Aclame:pro 206 ALAAQKYGAHFFRNGAMPGAVVEVPGT---MSEEGLAR--AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL 280 (457) Q Consensus 206 ~~~~~~~~~~~~~n~~~~~~~~~~~~~---~~~e~~~~--~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~ 280 (457) ...+.--........+.|..++..... ..++.-+. ....|. ...+.++.++++.++.++..+.- -.+. T Consensus 237 ~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~------~~~~~~~~~~~~~~~~q~~~~~~-~~~~ 309 (456) T protein:vir:79 237 INRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFE------AAPGALWELPPGVDIWESQTNDF-TPML 309 (456) T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhh------hhccccccCCCCcceeeecccCh-HHHH Confidence 554433322333333334333322110 01111111 111121 11245677788888877764422 3378 Q ss_pred HHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhh---cC-ccccccceEEEec Q lcl|Aclame:pro 281 QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---FA-ETADRFRFVKFNL 356 (457) Q Consensus 281 e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l---l~-~~~~~~~~~~f~~ 356 (457) +.++....+|+..-++|+..+|... ++.|+..++.+...+... +.-....+...|.+.+ +. ........++..+ T Consensus 310 ~~l~~~i~~i~~~t~~p~~~~~~~~-~N~Sg~Al~~~~~~l~~k-~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w 387 (456) T protein:vir:79 310 SAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFK-CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) T ss_pred HHHHHHHHHHHhhcCCChhHhcccc-cCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEe Confidence 8899999999999999999998543 233443333222222211 1111122222222111 00 1111122344555 Q ss_pred chhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 357 DEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 357 ~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ......+..+.++++.++++.|+++..-+++++|+.+..-... .++...+....... +.. .. T Consensus 388 ~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~----------e~~r~~~e~~~~~~---~~~-----~~ 449 (456) T protein:vir:79 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD----------DLDRAREQITLFAG---NPV-----QR 449 (456) T ss_pred CCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHH----------HHHHHHHHHHHHhh---hHh-----hc Confidence 5667788899999999999999999888888888865310000 00000000000000 000 00 Q ss_pred CCcccCC Q lcl|Aclame:pro 437 EEPDNAE 443 (457) Q Consensus 437 ~~~~~~~ 443 (457) +.++.+. T Consensus 450 ~~~~~~~ 456 (456) T protein:vir:79 450 PQEDGSR 456 (456) T ss_pred CCCCCCC Confidence 0001000 No 158 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=99.12 E-value=8e-10 Score=70.45 Aligned_cols=425 Identities=10% Similarity=-0.012 Sum_probs=193.7 Q ss_pred Cch---hhhhhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGF---WSALFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~---~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |.. +.++..+.. .+..... ...+...-.. +..........-+..-+.+......++..+.-+-+-|+++. T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~~~l-~~Yy~g~~~i---~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:10 39 LQNVNEVSKCIEHHMDYQRPRLKVL-SDYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred ccCHHHHHHHHHHHHHhhHHHHHHH-HHHhcccCcc---ccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee Confidence 111 111111100 0000000 0000000000 00000000000001112246667778888888878888764 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) ...+ .....+...............+..+++.+|.+|..+..+..+-..+..++|..+.++.+........ T Consensus 115 ~~d~---------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~ 185 (511) T protein:vir:10 115 DDDK---------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSI 185 (511) T ss_pred cCch---------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceE Confidence 3221 1112222222223455667778889999999999998876445567888999998877654322111 Q ss_pred e-eEEEEEeeecc-c----ceeEEeccceEEEeccCC-------------------------ccCCccccchhHHHHHHH Q lcl|Aclame:pro 155 V-FEAYDIDADGN-E----VLLGWFTPRDVLHIPGMM-------------------------LPGDFVGCSPISYARESI 203 (457) Q Consensus 155 ~-~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~-------------------------~~~~~~G~s~~~~~~~~i 203 (457) . ...|......+ . .....+.++.|.++.... ..+...|.|-+..+...| T Consensus 186 ~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~li 265 (511) T protein:vir:10 186 AGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLI 265 (511) T ss_pred EEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHH Confidence 1 11121111000 0 011223444444432110 011236888899888888 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 204 GLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 204 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) +....+..-....+..+..|-.++......+.++....++.-.-....... .+...-..++.++..+........+... T Consensus 266 Da~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~ 345 (511) T protein:vir:10 266 DLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAY 345 (511) T ss_pred HHHHHHHHHHHHHHHHhhCceeeeeccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHH Confidence 888877766666677777777777654444444433332211110100000 1111223445666666655555666777 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHH----------HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE----------QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+... ++.|+..+.. .....+..+|.-.++.|...+...--.........+ T Consensus 346 ~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i 424 (511) T protein:vir:10 346 KDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTV 424 (511) T ss_pred HHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccee Confidence 88888999999999875443222 3334432221 122333334444444444433322111111222346 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+...+..|..+.++.+.++. |+++.--+.+++++-. ++..+ +..+....+.. ..... ....... T Consensus 425 ~i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~--d~~~E-------~~ri~~E~~~~-~~~~~-~~~~~~~ 491 (511) T protein:vir:10 425 RYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQ--DPELE-------VKKIEEDEKES-IKKAQ-KGIYKDP 491 (511) T ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCC--CHHHH-------HHHHHHHHHHH-HHHHh-hhcccCC Confidence 67778888899999999999885 8898877888875432 21110 01111111100 00000 0001111 Q ss_pred CCCCCCcccCCCCccccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ 452 (457) .+.+..+...+.+.+..++| T Consensus 492 ~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 492 RDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCCcccCcccccC Confidence 11111111111111111111 No 159 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=99.12 E-value=8.6e-11 Score=75.77 Aligned_cols=413 Identities=13% Similarity=0.105 Sum_probs=172.4 Q ss_pred Cc-------------hhhhhhccccc--ccccccccccccccchhhhcccccccCccccCH---HHHhccHHHHHHHHHH Q lcl|Aclame:pro 1 MG-------------FWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTP---HDALQVSAVFASVRLL 62 (457) Q Consensus 1 Mg-------------~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~v~~~i~~i 62 (457) |. +..+|.+.... +..... .+++..... ....+..+.. .....+.+...+|+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~l-~~Yy~G~~~-------i~~~~~~~~~~~~~~~~~~n~~~~ivd~~ 72 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERTQDLGDN-TAYYESERR-------PDAVGVTVPQQMQKLLAHVGYPRLYIDAI 72 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccc-------chhcccccchhHHhhhhhcCcHHHHHHHH Confidence 11 11112111110 000000 001100000 0000011111 1112345556677777 Q ss_pred HHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCc-e-------eEEE Q lcl|Aclame:pro 63 SETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPN-I-------AGLD 134 (457) Q Consensus 63 a~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~-~-------~~~~ 134 (457) +..+--.++.+ .++. .....+..++.+ .........+..+.+.+|.+|+.+.++... . ..+. T Consensus 73 ~~~l~~~g~~~---~~~~---~~~~~l~~i~~~----N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~ 142 (484) T protein:vir:77 73 AARQELEGFRL---GGAD---KADEQLWDWWQA----NDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIR 142 (484) T ss_pred HhhhccCceec---CCcc---hhHHHHHHHHHh----cCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEE Confidence 76554444442 1111 112223333332 234566788899999999999998876432 1 2467 Q ss_pred EeccceeEEEEcCCCcccceeeEEEEEeeeccc-ceeEEecc-------------------------ceEEEeccCCccC Q lcl|Aclame:pro 135 VLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNE-VLLGWFTP-------------------------RDVLHIPGMMLPG 188 (457) Q Consensus 135 ~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~-------------------------~evih~~~~~~~~ 188 (457) +++|..+.++.+...+........| .....+. .....|.+ --|+++.+....+ T Consensus 143 ~~~p~~~~~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~ 221 (484) T protein:vir:77 143 VEPPTNLYAQIDPRTRQVMRAIRAI-EDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLS 221 (484) T ss_pred EeccceeEEEecCCCCceEEEEEEE-EeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccC Confidence 7888888877765322211111111 0000000 00011111 2345555433334 Q ss_pred CccccchhHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH--HHHHHHHHhccccccCcceecc-Cc Q lcl|Aclame:pro 189 DFVGCSPISY-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR--AREAWRAANSGVDNAHRVALLT-EG 264 (457) Q Consensus 189 ~~~G~s~~~~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~n~~~~~vl~-~g 264 (457) ..+|.|-+.. +...++....+.--......-.+.|..++..- ..++...+. -...|.. ..+.++.++ ++ T Consensus 222 ~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 294 (484) T protein:vir:77 222 DLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGV-KGEELGVDPETGQTLFDA------YLARILAFEDHE 294 (484) T ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCC-Ccchhcccccccchhhhh------hhhhhcccCCCC Confidence 5578876653 33334444433333223333334455544421 111111110 0111111 123455555 45 Q ss_pred ceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHH----hh Q lcl|Aclame:pro 265 AKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN----RL 340 (457) Q Consensus 265 ~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~----~~ 340 (457) .++.++....-+ .|++..+....+|+.+-++|++.+|.......|+..+......+...+ .-....+...|. .. T Consensus 295 ~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka-~~k~~~f~~~l~~~~~l~ 372 (484) T protein:vir:77 295 SKAQQFSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTV-ERKNKIFGGAWEQAMRVA 372 (484) T ss_pred ceeEeecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH Confidence 777777654332 477888888999999999999999875543333332222221111111 111111111111 11 Q ss_pred --hcCccc--cccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeeccc---cccc Q lcl|Aclame:pro 341 --LFAETA--DRFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPLN---LGEI 411 (457) Q Consensus 341 --ll~~~~--~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~n---~~~~ 411 (457) +....+ .....+.+.+......+..+.++.+.+++++| +++..-+++++|+.+-+-.......-... ...+ T Consensus 373 ~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~ 452 (484) T protein:vir:77 373 YKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLM 452 (484) T ss_pred HHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH Confidence 111111 11233555666777888999999999999876 88887789999885432111110000000 0000 Q ss_pred ccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 412 GEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +..... .+.....++.+ ++++++...+..+ T Consensus 453 ~~~~~~---------~~~~~~~~~~~-------~~~~~~~~~~~~~ 482 (484) T protein:vir:77 453 GTMFGT---------DPSGGGNPDNP-------ETPEPQPNPAEEA 482 (484) T ss_pred hhhccc---------cccCCCCCCCC-------CcccccCCCcccc Confidence 000000 00000000101 1111111111122 No 160 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=99.10 E-value=4.3e-10 Score=71.93 Aligned_cols=412 Identities=14% Similarity=0.107 Sum_probs=174.0 Q ss_pred Cch-------------hhhhhcccccccccccccccccccchhhhcccccccCccccC---HHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGF-------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVT---PHDALQVSAVFASVRLLSE 64 (457) Q Consensus 1 Mg~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~i~~ia~ 64 (457) +|+ .+.+-.+. +...... +.+...-. .... +..+. ......+.+...+++..+. T Consensus 6 ~~~~~~~~~~~~~~~L~~~~~~~~--~r~~~~~-~YY~G~~~-i~~~------~~~~~~~~~~~~~~~n~~~~ivd~~~~ 75 (485) T protein:vir:24 6 PGQEEIADPAIARDEMVSAFEDQN--QNLRSNT-SYYEAERR-PEAI------GVTVPVQMQSLLAHVGYPRLYVDSIAE 75 (485) T ss_pred CCCCcccchHHHHHHHHHHHHHHH--HHHHHHH-HHHhccCc-hhhc------CcccchhhhhhhhccchHHHHHHHHhh Confidence 221 12111110 0000000 00100000 0000 00010 1111123455666666666 Q ss_pred hhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------ceeEEEEe Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP--------NIAGLDVL 136 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g--------~~~~~~~l 136 (457) .+...++.+- ++. .....+..++.. | ........+..+++.+|.+|+.+.++.. ....+.++ T Consensus 76 ~l~~~g~~~~---~~~---~~~~~l~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~ 145 (485) T protein:vir:24 76 RQAVEGFRLG---DAD---EADEELWQWWQA-N---NLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVE 145 (485) T ss_pred hhccCceecC---CCc---hhHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEe Confidence 6544455421 111 111223333332 2 3456678889999999999999876532 22346778 Q ss_pred ccceeEEEEcCCCcccceeeEEEEEeeeccc-ceeEEecc-------------------------ceEEEeccCCccCCc Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFEAYDIDADGNE-VLLGWFTP-------------------------RDVLHIPGMMLPGDF 190 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~-------------------------~evih~~~~~~~~~~ 190 (457) +|..+.++.+...+........+. ....+. .....|.. =-|+|+++.....+. T Consensus 146 ~p~~~~~i~D~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~ 224 (485) T protein:vir:24 146 PPTRMYAEIDPRIGRPAKAIRVAY-DAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDL 224 (485) T ss_pred ccceeEEEeeCCcCceeEEEEEEE-eecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCc Confidence 888887777644322111111110 000000 00011122 234555444334556 Q ss_pred cccchhHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHH--HHHHHHHHhccccccCcceecc-Ccce Q lcl|Aclame:pro 191 VGCSPISY-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLAR--AREAWRAANSGVDNAHRVALLT-EGAK 266 (457) Q Consensus 191 ~G~s~~~~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~n~~~~~vl~-~g~~ 266 (457) +|.|-+.. +...++....+..-........+.|..++..- ...+...+. -...|. ...+.++.++ ++.+ T Consensus 225 ~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~-~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~ 297 (485) T protein:vir:24 225 YGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGI-KPEEIGVDPETGQTLFD------AYLARILAFEDAEGK 297 (485) T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccC-Cccccccccccccchhh------hcccceeccCCCCce Confidence 78887653 44555555444443333444445565555421 111110000 011111 1134455554 5667 Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 267 FSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAG 336 (457) Q Consensus 267 ~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~ 336 (457) +.++....-+ .+++.++....+++..-++|+..+|.....+.|+..+..... ..+..+|.-.++.+... T Consensus 298 ~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~ 376 (485) T protein:vir:24 298 IQQFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRL 376 (485) T ss_pred EEeecccchH-HHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7666644323 477888888899999999999999865543334432222111 11222222222222111 Q ss_pred HHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeecccccccccc Q lcl|Aclame:pro 337 FNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEE 414 (457) Q Consensus 337 l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~ 414 (457) .+. .........+.+.+......+..+.++.+.+++.+| +++..-+++++|+.+-+-.+... . T Consensus 377 ~~~---~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~------------~ 441 (485) T protein:vir:24 377 MKG---GDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRR------------W 441 (485) T ss_pred hcC---CCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHH------------H Confidence 110 000112234556666667788899999999998876 67777788888875432111110 0 Q ss_pred cccccccCCCccCC-CCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 415 PEPEPAPAPPAIDP-PAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 415 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+.+........+. ....+..+..++..+ ..+..++.+..|+ T Consensus 442 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~ 484 (485) T protein:vir:24 442 DEEEAAMGLGLLGTMVDADPTVPGSPNPTP-APKPQPAIEGGDS 484 (485) T ss_pred HHHHhhhhhhHHHhhcccCCCCCCCCCCCC-CCCCccCCCCCCC Confidence 00000000000000 000000000000000 1111111222222 No 161 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=99.10 E-value=5.9e-10 Score=71.17 Aligned_cols=417 Identities=8% Similarity=0.006 Sum_probs=189.0 Q ss_pred Cchhhhhhccccc--cccc-ccccccc-------ccc------chhhhccccccc-----CccccCHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALD-AAEGRAW-------EPY------DPSIYNLGATAS-----SGERVTPHDALQVSAVFASV 59 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~-~~~~~~~-------~~~------~~~~~~~~~~~~-----~~~~v~~~~~~~~~~v~~~i 59 (457) ||||.++.+...+ ..+. ....... +.. .+..+.-+-+.. .......+...+......++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 9999876432221 0110 0000000 000 000000000000 00000111223334445555 Q ss_pred HHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccc Q lcl|Aclame:pro 60 RLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPT 139 (457) Q Consensus 60 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~ 139 (457) +.+|+-+..=|..+... +......+++--....+...++..+...+..|.+++.+..+++++ .+..+++. T Consensus 81 ~~~A~lv~~e~~~i~v~---------d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~-~i~~v~ad 150 (522) T protein:vir:47 81 KKIASLVYNEQATITTK---------NEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKV-RVAFIQAP 150 (522) T ss_pred HHHhhhhcCCcceeecC---------ChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCce-EEEEEcCC Confidence 66666665544443321 112222222222223345567777888888898888877665543 45556666 Q ss_pred eeEEEEcCCCcccc-----------------ee-eE-------------------EEEEeee-----cc--ccee----- Q lcl|Aclame:pro 140 KIHVHMVMVDGLRR-----------------KV-FE-------------------AYDIDAD-----GN--EVLL----- 170 (457) Q Consensus 140 ~v~~~~~~~~~~~~-----------------~~-~~-------------------~y~~~~~-----~~--~~~~----- 170 (457) .+.++....++... +. .. .|.+... .. -+.. T Consensus 151 ~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~ 230 (522) T protein:vir:47 151 VFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSE 230 (522) T ss_pred ceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccc Confidence 65554322222110 00 00 0111000 00 0000 Q ss_pred ----EEecc---------ceEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceE----Eec Q lcl|Aclame:pro 171 ----GWFTP---------RDVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAV----VEV 229 (457) Q Consensus 171 ----~~~~~---------~evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~----~~~ 229 (457) ..+.+ --..|++.+.+. +.++|+|.+..+...|...+........-|+.|-..-.+ +.. T Consensus 231 ~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~ 310 (522) T protein:vir:47 231 LDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQR 310 (522) T ss_pred cccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhcc Confidence 00000 012244443222 346899999999999998887777777777765543111 221 Q ss_pred CCCC-CHH-HHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccc Q lcl|Aclame:pro 230 PGTM-SEE-GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNS 307 (457) Q Consensus 230 ~~~~-~~e-~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~ 307 (457) .... +.+ ......+.-...|.... .-.+++-+++.++....+-++.+..+...+.|+...|+++..+|....+ T Consensus 311 ~~~~~~g~~~~~~~fd~~~~~f~~~~-----~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~ 385 (522) T protein:vir:47 311 QYQRPDGTIDFRPRFDVEQNVYMQIG-----GSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQG 385 (522) T ss_pred CCCCCCcccccccccCcccceEeecC-----CCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccc Confidence 1111 000 00000000001111110 0012333566677666778899999999999999999999999987655 Q ss_pred ccccchHH----------HHHHHHHHHHHhhHHHHHHHHHHh-hhcCccccccceEEEecchhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 308 TSWGSGLA----------EQNIAFTMFSLRPWLERIEAGFNR-LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQ 376 (457) Q Consensus 308 ~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~l~~-~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 376 (457) ..+..-+. ......++.+|..++..|-...+. .++.........+.+++++-+..|.++.++.+.+++. T Consensus 386 ~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~ 465 (522) T protein:vir:47 386 MKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVA 465 (522) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHh Confidence 43332221 112333444444444444433332 1222222234567888988889999999999999999 Q ss_pred CCCcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 377 NGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 377 ~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) +|+|++-+++.+. |+ ++++.++-+ ....+.+.. ..+...+....+. +...+ ..++| T Consensus 466 aG~~s~e~~i~~~~g~---~eeea~~el--------~ri~~E~~~-~~~~~~~~~~~~~----~~~~~-~d~~~ 522 (522) T protein:vir:47 466 AGFSTKKRAIGKTLNI---SGVEAEKEL--------NAINSELLP-MNDAELAIYGMHD----QNEEK-ADDKG 522 (522) T ss_pred cCCCCHHHHHHhcCCC---ChHHHHHHH--------HHHHHhhcc-CCCCCCCCCCCCC----ccccc-CCCCC Confidence 9999999987653 43 332232111 111111111 1110001111011 11111 11122 No 162 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=99.09 E-value=5.2e-10 Score=71.49 Aligned_cols=425 Identities=11% Similarity=0.001 Sum_probs=186.8 Q ss_pred Cchhhh---hhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSA---LFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~---l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |-..+. +..+.. .+..... ...+...-+. +..........-+..-+.+......++..+.-+-+-|+.+. T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~~~l-~~Yy~g~~~i---l~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:78 39 LQNVNEVSKYIEHHMDYQRPRLKVL-SDYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred hcCHHHHHHHHHHHHHhhhHHHHHH-HHHhhccCcc---ccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee Confidence 111111 111000 0000000 0000000000 00000000000001112346667778888888778887764 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) ...+. ....+..++.. .....+...+..+++.+|.+|..+..+..+...+..++|..+.++.+........ T Consensus 115 ~~d~~-----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~ 185 (511) T protein:vir:78 115 DDDKD-----VLEAIEAFNDL----NDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSI 185 (511) T ss_pred cCchH-----HHHHHHHHHhh----cChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceE Confidence 22211 11222333322 3345667778889999999999998876555677889999998887654322111 Q ss_pred e-eEEEEEeeecc-c----ceeEEeccceEEEeccCCc-------------------------cCCccccchhHHHHHHH Q lcl|Aclame:pro 155 V-FEAYDIDADGN-E----VLLGWFTPRDVLHIPGMML-------------------------PGDFVGCSPISYARESI 203 (457) Q Consensus 155 ~-~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~~-------------------------~~~~~G~s~~~~~~~~i 203 (457) . ...|......+ . .....+.++.+.++..... .+...|.|-+..+...| T Consensus 186 ~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~li 265 (511) T protein:vir:78 186 AGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLI 265 (511) T ss_pred EEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHH Confidence 1 11221111110 0 0112345555554422110 11236888888888888 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 204 GLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 204 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) +....+..-....+.....|-.+++.....+.++.......-.-......- ...-.-...+.++..+........+... T Consensus 266 Da~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~ 345 (511) T protein:vir:78 266 DLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAY 345 (511) T ss_pred HHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHH Confidence 877776666666666666777766654444444333222211000000000 0000112234445545444445556677 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+... ++.|+..+.-+. ...+..+|...++.|...+...--.........+ T Consensus 346 ~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i 424 (511) T protein:vir:78 346 KDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTV 424 (511) T ss_pred HHHHHHHHHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc Confidence 78888999999999976554322 333443222111 2222333333333333333221111111122235 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+...+..+..+.++.+.++. |+++..-+.+++++-+-+..+. ..+..................... T Consensus 425 ~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El---------~ri~~E~~~~~~~~~~~~~~~~~~ 493 (511) T protein:vir:78 425 RYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEV---------KKIEEDEKESIKKAQKGIYKDPRD 493 (511) T ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHH---------HHHHHHHHHHHHHHhhccccCCCC Confidence 66677778889999999988885 8898877877775422111111 111111111000000000000111 Q ss_pred CCCCCCcccCCCCccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGE 450 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (457) ..+++.++..+...++++ T Consensus 494 ~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 494 INDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCccCcccccC Confidence 111111111111111111 No 163 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=99.09 E-value=5.2e-10 Score=71.49 Aligned_cols=425 Identities=11% Similarity=0.001 Sum_probs=186.8 Q ss_pred Cchhhh---hhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGFWSA---LFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~~~~---l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |-..+. +..+.. .+..... ...+...-+. +..........-+..-+.+......++..+.-+-+-|+.+. T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~~~l-~~Yy~g~~~i---l~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:96 39 LQNVNEVSKYIEHHMDYQRPRLKVL-SDYYEGKTKN---LVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred hcCHHHHHHHHHHHHHhhhHHHHHH-HHHhhccCcc---ccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee Confidence 111111 111000 0000000 0000000000 00000000000001112346667778888888778887764 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) ...+. ....+..++.. .....+...+..+++.+|.+|..+..+..+...+..++|..+.++.+........ T Consensus 115 ~~d~~-----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~ 185 (511) T protein:vir:96 115 DDDKD-----VLEAIEAFNDL----NDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSI 185 (511) T ss_pred cCchH-----HHHHHHHHHhh----cChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceE Confidence 22211 11222333322 3345667778889999999999998876555677889999998887654322111 Q ss_pred e-eEEEEEeeecc-c----ceeEEeccceEEEeccCCc-------------------------cCCccccchhHHHHHHH Q lcl|Aclame:pro 155 V-FEAYDIDADGN-E----VLLGWFTPRDVLHIPGMML-------------------------PGDFVGCSPISYARESI 203 (457) Q Consensus 155 ~-~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~~-------------------------~~~~~G~s~~~~~~~~i 203 (457) . ...|......+ . .....+.++.+.++..... .+...|.|-+..+...| T Consensus 186 ~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~li 265 (511) T protein:vir:96 186 AGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLI 265 (511) T ss_pred EEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHH Confidence 1 11221111110 0 0112345555554422110 11236888888888888 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccc-cCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 204 GLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDN-AHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 204 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n-~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) +....+..-....+.....|-.+++.....+.++.......-.-......- ...-.-...+.++..+........+... T Consensus 266 Da~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~ 345 (511) T protein:vir:96 266 DLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAY 345 (511) T ss_pred HHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHH Confidence 877776666666666666777766654444444333222211000000000 0000112234445545444445556677 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+... ++.|+..+.-+. ...+..+|...++.|...+...--.........+ T Consensus 346 ~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i 424 (511) T protein:vir:96 346 KDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTV 424 (511) T ss_pred HHHHHHHHHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc Confidence 78888999999999976554322 333443222111 2222333333333333333221111111122235 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+...+..+..+.++.+.++. |+++..-+.+++++-+-+..+. ..+..................... T Consensus 425 ~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El---------~ri~~E~~~~~~~~~~~~~~~~~~ 493 (511) T protein:vir:96 425 RYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEV---------KKIEEDEKESIKKAQKGIYKDPRD 493 (511) T ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHH---------HHHHHHHHHHHHHHhhccccCCCC Confidence 66677778889999999988885 8898877877775422111111 111111111000000000000111 Q ss_pred CCCCCCcccCCCCccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGE 450 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (457) ..+++.++..+...++++ T Consensus 494 ~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 494 INDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCccCcccccC Confidence 111111111111111111 No 164 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=99.08 E-value=6e-10 Score=71.14 Aligned_cols=418 Identities=14% Similarity=0.114 Sum_probs=173.1 Q ss_pred Cc-------hhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MG-------FWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg-------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) |. +++.|........... ...+.+..... ..... ... . .-.........+...+|+.++..+--.++. T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~-i~~~~-~~~-~-~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~ 83 (485) T protein:vir:10 8 QEEIEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERR-PEAIG-VTV-P-IQMQSLLAHVGYPRLYVDSIAERQAVEGFR 83 (485) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhcC-CCC-C-hhhhhhhhhcCcHHHHHHHHHhhhccccee Confidence 11 1222222111110000 00000000000 00000 000 0 000111112345566777777655333433 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------ceeEEEEeccceeEEE Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP--------NIAGLDVLDPTKIHVH 144 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g--------~~~~~~~l~p~~v~~~ 144 (457) + .++. .....+..++.+ .....+...+..+++.+|.||+.+.++.. +...+.+++|..+.+. T Consensus 84 ~---~~~~---~~~~~~~~i~~~----N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~ 153 (485) T protein:vir:10 84 F---GDAD---EADEELWQWWQA----NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAE 153 (485) T ss_pred c---CCCc---hhHHHHHHHHHh----cCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEE Confidence 2 1111 111223333322 23456778889999999999999887632 2334677889888877 Q ss_pred EcCCCcccceeeEEEEEeeeccc-ceeEEeccc-------------------------eEEEeccCCccCCccccchhHH Q lcl|Aclame:pro 145 MVMVDGLRRKVFEAYDIDADGNE-VLLGWFTPR-------------------------DVLHIPGMMLPGDFVGCSPISY 198 (457) Q Consensus 145 ~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~-------------------------evih~~~~~~~~~~~G~s~~~~ 198 (457) .+...+........+ +....+. .....+.++ -|+++.+.....+.+|.|-+.. T Consensus 154 ~D~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~ 232 (485) T protein:vir:10 154 IDPRIGRVSKAIRVA-YDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITP 232 (485) T ss_pred EcCCCCceeEEEEEE-EeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhH Confidence 764433222111111 1111110 001122222 3444444333344577776543 Q ss_pred -HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH--HHHHHHHHHhccccccCcceecc-CcceeeeccCCh Q lcl|Aclame:pro 199 -ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA--RAREAWRAANSGVDNAHRVALLT-EGAKFSKVAMSP 274 (457) Q Consensus 199 -~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~~~s~ 274 (457) +...++....+..-......-.+.|..+++... ..+...+ .-...+. ...+.++.++ ++.++.++.... T Consensus 233 ~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~-~~~~~~~~~~~~~~~~------~~~~~i~~~~~~d~k~~q~~~~~ 305 (485) T protein:vir:10 233 ELRSMTDAAARILMLMQATAELMGVPQRLIFGIK-PEEIGVDPETGQTLFD------AYLARILAFEDAEGKIQQFSAAE 305 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCC-cccccccccccchhhh------hcccceeccCCCCceEEeecccc Confidence 334444444333333233333444544444211 1111000 0011111 1124556655 456776665443 Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh------hcCccc-- Q lcl|Aclame:pro 275 DEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL------LFAETA-- 346 (457) Q Consensus 275 ~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~------ll~~~~-- 346 (457) -+ .+++..+....+|+..-++|++.+|.......|+..+......+...+ .-....+...|.+. +..... T Consensus 306 ~~-~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~-~~k~~~f~~~l~~~~~l~~~~~~~~~~~ 383 (485) T protein:vir:10 306 LA-NFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKV-ERKNSIFGGAWEEAMRLAYRMMKGGDVP 383 (485) T ss_pred hH-HHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCc Confidence 22 478888888999999999999999865543334433332222221111 11222222222111 111111 Q ss_pred cccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeecc---ccccccccccccccc Q lcl|Aclame:pro 347 DRFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPL---NLGEIGEEPEPEPAP 421 (457) Q Consensus 347 ~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~---n~~~~~~~~~~~~~~ 421 (457) .....+.+.+......+..+.++++.+++++| +++..-+++.+|+.+-+-.......--. ....++... .. T Consensus 384 ~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~----~~ 459 (485) T protein:vir:10 384 PDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMV----DP 459 (485) T ss_pred ccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhh----cc Confidence 12234556666777889999999999999876 7888888999988653211110000000 000000000 00 Q ss_pred CCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 422 APPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .+...+....++. ...+ ...+..++ T Consensus 460 ~~~~~~~~~~~~~--------~~~~---~~~~~~~~ 484 (485) T protein:vir:10 460 NPTVPGSPSPAPA--------PKPA---ALESGGDA 484 (485) T ss_pred CCCCCCCCCcccc--------ccCc---CCCCCCCC Confidence 0000000000000 0000 00111111 No 165 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=99.06 E-value=2.1e-09 Score=68.13 Aligned_cols=425 Identities=11% Similarity=0.004 Sum_probs=187.0 Q ss_pred Cch---hhhhhcccc---cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGF---WSALFGRGH---SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~---~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |-. +.++..+.. .+...... ..+...-... .-........-+..-+.+......++..+.-+.+-|+++. T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~~~l~-~Yy~g~~~i~---~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:99 39 LQNVNEVSKYIEHHMDYQRPRLKVLS-DYYEGKTKNL---VELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred hccHHHHHHHHHHHHHhhHHHHHHHH-HHhcccCccc---cccCcccccccCcceeecchHHHHHHHHHhhhcccCceee Confidence 111 111111110 00000000 0000000000 0000000000000112345566677888877778888764 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccc-c Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLR-R 153 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~-~ 153 (457) ...+ .....+...............+..+++.+|.+|..+..+......+..++|..+.++.+...... . T Consensus 115 ~~d~---------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~ 185 (511) T protein:vir:99 115 DDDK---------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSI 185 (511) T ss_pred cCch---------HHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceE Confidence 3221 11222222222234556777788999999999999988765556788899999988776543211 1 Q ss_pred eeeEEEEEeeecc-c----ceeEEeccceEEEeccCC-------------------------ccCCccccchhHHHHHHH Q lcl|Aclame:pro 154 KVFEAYDIDADGN-E----VLLGWFTPRDVLHIPGMM-------------------------LPGDFVGCSPISYARESI 203 (457) Q Consensus 154 ~~~~~y~~~~~~~-~----~~~~~~~~~evih~~~~~-------------------------~~~~~~G~s~~~~~~~~i 203 (457) .....|......+ . .....+.++.+.+++... ..+...|.|-+..+...| T Consensus 186 ~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~li 265 (511) T protein:vir:99 186 AGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLI 265 (511) T ss_pred EEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHH Confidence 1112221111000 0 011234444444432211 011236888888888888 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccc-cccCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 204 GLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGV-DNAHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 204 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) +....+..-....+.....|-.++......+.+.....++.-.-..... .-.+...-..+|.++..+........+... T Consensus 266 Da~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~ 345 (511) T protein:vir:99 266 DLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAY 345 (511) T ss_pred HHHHHHHHHHHHHHHHhhchhhhhccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHH Confidence 8777766666666666666666655433334333332222110000000 000111223445666666655555666777 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+... ++.|+..+.-+.. ..+..+|.-.++.|...+..+--.........+ T Consensus 346 ~~~L~~~I~~~s~~P~~~~~~~~-gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i 424 (511) T protein:vir:99 346 KDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTV 424 (511) T ss_pred HHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc Confidence 88889999999999886543322 3444433322211 222223333333333222221111111112234 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+..-+..+..+.++.+.++. |+++.--+.+++++-+ ++... +..+..................... T Consensus 425 ~i~f~~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~v~--D~~~E-------~~ri~~E~~~~~~~~~~~~~~~~~~ 493 (511) T protein:vir:99 425 RYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQ--DPELE-------VKKIEEDEKESIKKAQKNMYQDPRN 493 (511) T ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCC--CHHHH-------HHHHHHHHHHHHHHHhhcccccCCC Confidence 56666777888999999988874 8898877888875422 21110 0111111110000000000000001 Q ss_pred CCCCCCcccCCCCccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGE 450 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (457) ..+++.++..+...+++| T Consensus 494 ~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 494 INDDEQDDSTKDSIDKKE 511 (511) T ss_pred CCCCCCCCCCcCcccccC Confidence 011111111111111111 No 166 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=99.06 E-value=5.5e-10 Score=71.37 Aligned_cols=419 Identities=11% Similarity=0.022 Sum_probs=181.8 Q ss_pred Cchhhhhhccccccc-------ccc-cc-ccc-ccc------cchhhhccccccc-CccccC----HHHHhccHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA-------LDA-AE-GRA-WEP------YDPSIYNLGATAS-SGERVT----PHDALQVSAVFASV 59 (457) Q Consensus 1 Mg~~~~l~~~~~~~~-------~~~-~~-~~~-~~~------~~~~~~~~~~~~~-~~~~v~----~~~~~~~~~v~~~i 59 (457) ||||.++.+...+-. ... .. ... ... ..+..+.-+-++. ....+. -+..++......+. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 999987644322110 000 00 000 000 0000100010100 000000 00112223333333 Q ss_pred HHHHHhhccCceEEEEeccCcee--eecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 60 RLLSETIATLPLSTYSKRGGTRK--EIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 60 ~~ia~~ia~~p~~~~~~~~~~~~--~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) ..+|+-+..=+..+.....+... ..........+++--....+...++..+.+.+..|.+++.+..+++.+ .+..++ T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~-~I~~v~ 159 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-EFSWAL 159 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCee-EEEEEc Confidence 44444333323333222111110 001111122222222223345556667888888899998887766553 356677 Q ss_pred cceeEEEEcCCCccccee------------------eEE------------EEEee-----eccc--cee---------- Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRKV------------------FEA------------YDIDA-----DGNE--VLL---------- 170 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~~------------------~~~------------y~~~~-----~~~~--~~~---------- 170 (457) ++++.+.....++..... -.. |++.. .... +.. T Consensus 160 ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l 239 (517) T protein:vir:98 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) T ss_pred CCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCC Confidence 766655333222221100 000 11100 0000 000 Q ss_pred ---EEec--c-ceEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC---CCCCHHH Q lcl|Aclame:pro 171 ---GWFT--P-RDVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP---GTMSEEG 237 (457) Q Consensus 171 ---~~~~--~-~evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~---~~~~~e~ 237 (457) ..+. . --..|++.+-+. +..+|+|.+..+...+...+........-|+.|... .++... ...+... T Consensus 240 ~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~-i~vp~~~l~~~~~~~g 318 (517) T protein:vir:98 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT-VFVSDVMLRTVPDESG 318 (517) T ss_pred CcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcc-eecChhhhccccCCCC Confidence 0111 0 012244443222 346899999999999998887777777777775442 222100 0000000 Q ss_pred HH--HHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 238 LA--RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 238 ~~--~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) .. ...+.-...|.... .-.++-.++.++....+-++.+..+...++|+...|+++..+|....+..+..-+. T Consensus 319 ~~~~~~~d~~~~~y~~~~------~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~ 392 (517) T protein:vir:98 319 MPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIV 392 (517) T ss_pred cccCCCCCcccceeeecc------CCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHH Confidence 00 00000000000000 00122235666666667788999999999999999999999998766554332221 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHh------------hhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGFNR------------LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSID 383 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l~~------------~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~n 383 (457) .... -.-.++.-+...++..|.. .++...-.....+.+++++-+..|.++.++.+.+++.+|+|++- T Consensus 393 s~~~-~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~ 471 (517) T protein:vir:98 393 SEND-LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV 471 (517) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHH Confidence 1111 1122333333333333332 12222222345678899898999999999999999999999999 Q ss_pred HHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 384 EVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 384 E~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) +++.++ |+. ++++++-+. .+... +. . .++.. ..+ ....+.+.++| T Consensus 472 ~~i~~~~g~~---eeeA~~e~~-----~i~~E---~~-~----~~~~~-----~~~-~~~~~~~gd~e 517 (517) T protein:vir:98 472 EAIQRIFKVP---KKTAEQWLE-----EIRKD---QI-E----LDPVT-----ISQ-RAQKRMFGDEE 517 (517) T ss_pred HHHHHhCCCC---hHHHHHHHH-----HHHHh---cc-c----cCCCC-----ccc-cccCCCCCCCC Confidence 976554 653 222322211 11100 00 0 00000 000 00000111111 No 167 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=99.06 E-value=9.5e-10 Score=70.05 Aligned_cols=406 Identities=10% Similarity=0.014 Sum_probs=185.4 Q ss_pred Cchhhhhh---ccccc-----cccccccc--cc-cccc-------chhhhcccccccCcccc----CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MGFWSALF---GRGHS-----PALDAAEG--RA-WEPY-------DPSIYNLGATASSGERV----TPHDALQVSAVFAS 58 (457) Q Consensus 1 Mg~~~~l~---~~~~~-----~~~~~~~~--~~-~~~~-------~~~~~~~~~~~~~~~~v----~~~~~~~~~~v~~~ 58 (457) ||||.++. ++... ........ .. .++. ...++..-.+......+ ..+...+......+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 99998763 32111 11110000 00 0000 00000000000001000 01111233444566 Q ss_pred HHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEecc Q lcl|Aclame:pro 59 VRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDP 138 (457) Q Consensus 59 i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p 138 (457) ++..|+-+..=|..+....++. ....+..++. ...+..-++..+.+.+..|.+++.+..+.++ ..+..++| T Consensus 81 ~~~~A~lv~~e~~~i~v~~~~~----~~e~l~~il~----~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~-~~i~~v~a 151 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDNNE----ADKFLNDVLE----DNDFKNKFEEALEKGVALGGFAMRPYIDGNH-IKIAWVRA 151 (508) T ss_pred HHHHHhhhhCCCceEEeCCchH----HHHHHHHHHH----hccHHHHHHHHHHHHhhcCceEEEEEEeCCe-eEEEEEcC Confidence 6666666655455444322211 1111222222 2234455667788889999999888777655 34666777 Q ss_pred ceeEEEEcCCCcccceee-E-----------E--------------EEEeeec---cc----ceeE---Eec-----cc- Q lcl|Aclame:pro 139 TKIHVHMVMVDGLRRKVF-E-----------A--------------YDIDADG---NE----VLLG---WFT-----PR- 176 (457) Q Consensus 139 ~~v~~~~~~~~~~~~~~~-~-----------~--------------y~~~~~~---~~----~~~~---~~~-----~~- 176 (457) ..+.+.....++.....+ . . |.+.... .. +... .++ ++ T Consensus 152 d~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~ 231 (508) T protein:vir:15 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) T ss_pred CeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcc Confidence 776554333332211100 0 0 1100000 00 0000 000 00 Q ss_pred ---------eEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe---cCCCCCHHHHHH Q lcl|Aclame:pro 177 ---------DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVE---VPGTMSEEGLAR 240 (457) Q Consensus 177 ---------evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~---~~~~~~~e~~~~ 240 (457) -..|++.+.+. +..+|+|.+..+...+...+........-|+. +.+..++. ++.+ ++.... T Consensus 232 ~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~d--~~~~~~ 308 (508) T protein:vir:15 232 VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQPGMLRFD--DEHKPT 308 (508) T ss_pred eEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHh-cccceeechHHhcCC--CCCccc Confidence 11233332222 34679999999999999988887777777764 44554442 1111 110000 Q ss_pred HHHHHHHHhccccccCccee--ccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH Q lcl|Aclame:pro 241 AREAWRAANSGVDNAHRVAL--LTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) Q Consensus 241 ~~~~~~~~~~~~~n~~~~~v--l~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~ 318 (457) +. ...+....+- -+.|..++.++....+-++.+..+...+.|....|++|..+|....+..++..+.... T Consensus 309 ~~--------~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~ 380 (508) T protein:vir:15 309 FD--------TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNN 380 (508) T ss_pred cC--------CCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHH Confidence 00 0000000000 1234456667666667778999999999999999999999997765544332221111 Q ss_pred ----------HHHHHHHHhhHHHHHHHHHHhhhcCccc---------cccceEEEecchhhhccHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 319 ----------IAFTMFSLRPWLERIEAGFNRLLFAETA---------DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGI 379 (457) Q Consensus 319 ----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~---------~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~ 379 (457) ...++.+|..++..|-......-+...+ .....+.+++++-+..|.++..+.+.+++.+|+ T Consensus 381 ~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi 460 (508) T protein:vir:15 381 SMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCC Confidence 1222333333333332222210011110 122356788888889999999999999999999 Q ss_pred cCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 380 YSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 380 ~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) ++.-+++.+. |++ +++.++-+ ......+....+.........+ ..|| T Consensus 461 ~s~e~~i~~~~g~~---deea~~el--------~ri~~E~~~~~~~~~~~~~~~g-------------~~ge 508 (508) T protein:vir:15 461 LSKQTFLQRNYGMT---DEQAAEEL--------AKIQSEAPTDTFEGGRSAILNG-------------GDGE 508 (508) T ss_pred CCHHHHHHhcCCCC---hHHHHHHH--------HHHHHhccccCccccccccCCC-------------CCCC Confidence 9999987653 433 32222211 1111111110000000000000 0111 No 168 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=99.05 E-value=2.2e-09 Score=68.01 Aligned_cols=405 Identities=11% Similarity=-0.014 Sum_probs=193.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ....+...+....... ....................... .+..=+.++....+++..+.-+-+-|+++....+.. T Consensus 35 ~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~ 109 (474) T protein:vir:94 35 VNLYNRYKTHIDYVPI--FKRRPIEEKEDFETGGNVRRLDV---SVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAE 109 (474) T ss_pred HHHHHHHhhhcchhhh--hcchhhhhhhhhhhccccccccc---CcccccccchHHHHHHhHhhheeccceeEeeCCCCc Confidence 1111111110000000 00000000000000000000000 001113356667788888888888898765433211 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) .+..+...+.+.............+..+++.+|.+|..+..+......+..++|..+.++.+........+. .|. T Consensus 110 ----~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~-~~~ 184 (474) T protein:vir:94 110 ----KNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYSLR-YFY 184 (474) T ss_pred ----chHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEEcCCCceEEEEE-EEE Confidence 122333344333333345667888899999999999998877655567788999988777765433221111 111 Q ss_pred Eeeecccc---eeEEeccceEEEeccC---------------------CccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 IDADGNEV---LLGWFTPRDVLHIPGM---------------------MLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 161 ~~~~~~~~---~~~~~~~~evih~~~~---------------------~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) ........ ....+....+.+++.. ...+...|.|-+..+...++....+..-.... T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~ 264 (474) T protein:vir:94 185 EKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSE 264 (474) T ss_pred EeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 11100000 0011122222222211 01123468888888888888777776666666 Q ss_pred HHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 217 FRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGV 296 (457) Q Consensus 217 ~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgv 296 (457) +.....|-.+++. ...+++.....+ ..+.+.+.+++.++..+........+....+.+.+.|...-++ T Consensus 265 ~~~~~~~~l~i~g-~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 332 (474) T protein:vir:94 265 ISQTRLAYLVLRG-MGMSEEMIQETQ-----------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKS 332 (474) T ss_pred HHHhhcchhhhcc-CCCCchhhhhhh-----------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCC Confidence 6666667666643 333443322221 1244555676777776665545566677888889999999999 Q ss_pred CHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 297 PPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 297 pp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |..-.+.. .++.|+....-+ ....+..+|.-.++.|...++.+-..........+.+.+...+..|..+ T Consensus 333 p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e 411 (474) T protein:vir:94 333 VNFNSDEF-NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLE 411 (474) T ss_pred cccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHH Confidence 87544322 233344332221 1223344444444444444433211111112234567777778899999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 367 RMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 367 ~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457) .++.+.++. |+++..-+.+++++-+-+..+.+ .+..... ..... . ++...++. T Consensus 412 ~a~~~~kl~--g~iS~et~~~~l~~v~d~~~E~e---------ri~~E~~---e~~~~-~------------~~~~~~~~ 464 (474) T protein:vir:94 412 ESQVLINLK--GQVSERTRLGQSQLVDDVDYELD---------EMEKESL---EFNDK-L------------PDIDEGDA 464 (474) T ss_pred HHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHH---------HHHHHHH---HHHhh-c------------ccccCCCc Confidence 999998874 88998888888765321111111 1111100 00000 0 00001111 Q ss_pred c-cccccccc Q lcl|Aclame:pro 447 D-EGETEDDD 455 (457) Q Consensus 447 ~-~~~~~~~~ 455 (457) + +.+..++| T Consensus 465 ~~~~~~~~s~ 474 (474) T protein:vir:94 465 NDKSQNNQSE 474 (474) T ss_pred CCCCccccCC Confidence 1 11111111 No 169 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=99.05 E-value=2.2e-09 Score=68.01 Aligned_cols=405 Identities=11% Similarity=-0.014 Sum_probs=193.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) ....+...+....... ....................... .+..=+.++....+++..+.-+-+-|+++....+.. T Consensus 35 ~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~ 109 (474) T protein:vir:10 35 VNLYNRYKTHIDYVPI--FKRRPIEEKEDFETGGNVRRLDV---SVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAE 109 (474) T ss_pred HHHHHHHhhhcchhhh--hcchhhhhhhhhhhccccccccc---CcccccccchHHHHHHhHhhheeccceeEeeCCCCc Confidence 1111111110000000 00000000000000000000000 001113356667788888888888898765433211 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~ 160 (457) .+..+...+.+.............+..+++.+|.+|..+..+......+..++|..+.++.+........+. .|. T Consensus 110 ----~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~-~~~ 184 (474) T protein:vir:10 110 ----KNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYSLR-YFY 184 (474) T ss_pred ----chHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEEcCCCceEEEEE-EEE Confidence 122333344333333345667888899999999999998877655567788999988777765433221111 111 Q ss_pred Eeeecccc---eeEEeccceEEEeccC---------------------CccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 IDADGNEV---LLGWFTPRDVLHIPGM---------------------MLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 161 ~~~~~~~~---~~~~~~~~evih~~~~---------------------~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) ........ ....+....+.+++.. ...+...|.|-+..+...++....+..-.... T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~ 264 (474) T protein:vir:10 185 EKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSE 264 (474) T ss_pred EeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 11100000 0011122222222211 01123468888888888888777776666666 Q ss_pred HHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 217 FRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGV 296 (457) Q Consensus 217 ~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgv 296 (457) +.....|-.+++. ...+++.....+ ..+.+.+.+++.++..+........+....+.+.+.|...-++ T Consensus 265 ~~~~~~~~l~i~g-~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 332 (474) T protein:vir:10 265 ISQTRLAYLVLRG-MGMSEEMIQETQ-----------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKS 332 (474) T ss_pred HHHhhcchhhhcc-CCCCchhhhhhh-----------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCC Confidence 6666667666643 333443322221 1244555676777776665545566677888889999999999 Q ss_pred CHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 297 PPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 297 pp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |..-.+.. .++.|+....-+ ....+..+|.-.++.|...++.+-..........+.+.+...+..|..+ T Consensus 333 p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e 411 (474) T protein:vir:10 333 VNFNSDEF-NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLE 411 (474) T ss_pred cccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHH Confidence 87544322 233344332221 1223344444444444444433211111112234567777778899999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 367 RMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 367 ~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457) .++.+.++. |+++..-+.+++++-+-+..+.+ .+..... ..... . ++...++. T Consensus 412 ~a~~~~kl~--g~iS~et~~~~l~~v~d~~~E~e---------ri~~E~~---e~~~~-~------------~~~~~~~~ 464 (474) T protein:vir:10 412 ESQVLINLK--GQVSERTRLGQSQLVDDVDYELD---------EMEKESL---EFNDK-L------------PDIDEGDA 464 (474) T ss_pred HHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHH---------HHHHHHH---HHHhh-c------------ccccCCCc Confidence 999998874 88998888888765321111111 1111100 00000 0 00001111 Q ss_pred c-cccccccc Q lcl|Aclame:pro 447 D-EGETEDDD 455 (457) Q Consensus 447 ~-~~~~~~~~ 455 (457) + +.+..++| T Consensus 465 ~~~~~~~~s~ 474 (474) T protein:vir:10 465 NDKSQNNQSE 474 (474) T ss_pred CCCCccccCC Confidence 1 11111111 No 170 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=99.05 E-value=1e-10 Score=75.35 Aligned_cols=406 Identities=11% Similarity=0.002 Sum_probs=184.5 Q ss_pred Cchhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) .-++++|..+........ .....+...- ..... +.......-....-..+.+...+++..+..+-.-|+.+....+. T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~-~i~~~-~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d~ 84 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDA-PLPEL-TRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS 84 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cchhc-CcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCc Confidence 333344432221110000 0000111000 00000 00000000011112345677888999998888888876322211 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) . ....+..++.+ | ....+...+..+++.+|.+|..+..+..+...+..++|..+.++.+...+........| T Consensus 85 ~----~~~~~~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) T protein:vir:10 85 D----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) T ss_pred c----hHHHHHHHHHh-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEE Confidence 1 11223344443 2 23455677889999999999988776544456778899988887775543322111111 Q ss_pred EEeeeccc-------------------------ceeEEeccc------eEEEeccCC---ccCCccccchhHHHHHHHHH Q lcl|Aclame:pro 160 DIDADGNE-------------------------VLLGWFTPR------DVLHIPGMM---LPGDFVGCSPISYARESIGL 205 (457) Q Consensus 160 ~~~~~~~~-------------------------~~~~~~~~~------evih~~~~~---~~~~~~G~s~~~~~~~~i~~ 205 (457) ........ ......... +.-|.-... +.+...|+|-++.+...++. T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa 236 (456) T protein:vir:10 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR 236 (456) T ss_pred EEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHH Confidence 10000000 000000000 000100000 01223688888887777776 Q ss_pred HHHHHHHHHHHHHccCCcceEEecCCC---CCHHHHHHH--HHHHHHHhccccccCcceeccCcceeeeccCChhHHHHH Q lcl|Aclame:pro 206 ALAAQKYGAHFFRNGAMPGAVVEVPGT---MSEEGLARA--REAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL 280 (457) Q Consensus 206 ~~~~~~~~~~~~~n~~~~~~~~~~~~~---~~~e~~~~~--~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~ 280 (457) ...+.--........+.|..++..... ..++....+ ...|.. ..+.++.++++.++.++.... --.++ T Consensus 237 ~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~q~~~~~-~~~~~ 309 (456) T protein:vir:10 237 INRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA------APGALWELPPGVDIWESQAND-FTPML 309 (456) T ss_pred HHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhh------hccccccCCCCcceEEecccC-hhHHH Confidence 665544333333333444444432111 111111111 111211 124567788888887776432 23478 Q ss_pred HHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhh---cCccc-cccceEEEec Q lcl|Aclame:pro 281 QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---FAETA-DRFRFVKFNL 356 (457) Q Consensus 281 e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l---l~~~~-~~~~~~~f~~ 356 (457) +..+....+|++.-++|+..+|... +|.|+..++.+...+... ..-..+.+...|.+.+ +.-.+ .....+.+.+ T Consensus 310 ~~l~~~i~~~~~~s~~p~~~~~~~~-~N~Sg~Ai~~~~~~l~~k-~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w 387 (456) T protein:vir:10 310 SAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFK-CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) T ss_pred HHHHHHHHHHHhccCCChHHhcccc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEe Confidence 8899999999999999999998643 233343333222222211 1112222222222111 11111 1122345555 Q ss_pred chhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 357 DEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 357 ~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ......+..+.++++.++++.|+++..-+++++|+.+-.-.. ..++...+.....++..... .++++.. T Consensus 388 ~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~----------~e~er~~~e~~~~~~~~~~~-~~~~~~~ 456 (456) T protein:vir:10 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ----------DDLDRAREQITLFAGNPVQR-PQEDGSR 456 (456) T ss_pred cCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHH----------HHHHHHHHHHHHHhhhhhhc-CCCCCCC Confidence 666778889999999999999999888888888886521000 00111111111000000000 0011111 No 171 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=99.05 E-value=1e-10 Score=75.35 Aligned_cols=406 Identities=11% Similarity=0.002 Sum_probs=184.5 Q ss_pred Cchhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) .-++++|..+........ .....+...- ..... +.......-....-..+.+...+++..+..+-.-|+.+....+. T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~-~i~~~-~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d~ 84 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDA-PLPEL-TRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS 84 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cchhc-CcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCc Confidence 333344432221110000 0000111000 00000 00000000011112345677888999998888888876322211 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) . ....+..++.+ | ....+...+..+++.+|.+|..+..+..+...+..++|..+.++.+...+........| T Consensus 85 ~----~~~~~~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) T protein:vir:10 85 D----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) T ss_pred c----hHHHHHHHHHh-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEE Confidence 1 11223344443 2 23455677889999999999988776544456778899988887775543322111111 Q ss_pred EEeeeccc-------------------------ceeEEeccc------eEEEeccCC---ccCCccccchhHHHHHHHHH Q lcl|Aclame:pro 160 DIDADGNE-------------------------VLLGWFTPR------DVLHIPGMM---LPGDFVGCSPISYARESIGL 205 (457) Q Consensus 160 ~~~~~~~~-------------------------~~~~~~~~~------evih~~~~~---~~~~~~G~s~~~~~~~~i~~ 205 (457) ........ ......... +.-|.-... +.+...|+|-++.+...++. T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa 236 (456) T protein:vir:10 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR 236 (456) T ss_pred EEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHH Confidence 10000000 000000000 000100000 01223688888887777776 Q ss_pred HHHHHHHHHHHHHccCCcceEEecCCC---CCHHHHHHH--HHHHHHHhccccccCcceeccCcceeeeccCChhHHHHH Q lcl|Aclame:pro 206 ALAAQKYGAHFFRNGAMPGAVVEVPGT---MSEEGLARA--REAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL 280 (457) Q Consensus 206 ~~~~~~~~~~~~~n~~~~~~~~~~~~~---~~~e~~~~~--~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~ 280 (457) ...+.--........+.|..++..... ..++....+ ...|.. ..+.++.++++.++.++.... --.++ T Consensus 237 ~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~q~~~~~-~~~~~ 309 (456) T protein:vir:10 237 INRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA------APGALWELPPGVDIWESQAND-FTPML 309 (456) T ss_pred HHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhh------hccccccCCCCcceEEecccC-hhHHH Confidence 665544333333333444444432111 111111111 111211 124567788888887776432 23478 Q ss_pred HHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhh---cCccc-cccceEEEec Q lcl|Aclame:pro 281 QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---FAETA-DRFRFVKFNL 356 (457) Q Consensus 281 e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l---l~~~~-~~~~~~~f~~ 356 (457) +..+....+|++.-++|+..+|... +|.|+..++.+...+... ..-..+.+...|.+.+ +.-.+ .....+.+.+ T Consensus 310 ~~l~~~i~~~~~~s~~p~~~~~~~~-~N~Sg~Ai~~~~~~l~~k-~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w 387 (456) T protein:vir:10 310 SAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFK-CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) T ss_pred HHHHHHHHHHHhccCCChHHhcccc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEe Confidence 8899999999999999999998643 233343333222222211 1112222222222111 11111 1122345555 Q ss_pred chhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 357 DEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 357 ~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ......+..+.++++.++++.|+++..-+++++|+.+-.-.. ..++...+.....++..... .++++.. T Consensus 388 ~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~----------~e~er~~~e~~~~~~~~~~~-~~~~~~~ 456 (456) T protein:vir:10 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ----------DDLDRAREQITLFAGNPVQR-PQEDGSR 456 (456) T ss_pred cCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHH----------HHHHHHHHHHHHHhhhhhhc-CCCCCCC Confidence 666778889999999999999999888888888886521000 00111111111000000000 0011111 No 172 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=99.00 E-value=1.8e-09 Score=68.53 Aligned_cols=402 Identities=11% Similarity=0.053 Sum_probs=189.4 Q ss_pred Cchhhhhhccccc--cc--cccccc------c-cccccc------hhhhccccccc------CccccCHHHHhccHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PA--LDAAEG------R-AWEPYD------PSIYNLGATAS------SGERVTPHDALQVSAVFA 57 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~--~~~~~~------~-~~~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~v~~ 57 (457) ||||+++.+...+ ++ ...... + ..++.. +..+.-+-+.. .+.. ..+...+...... T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~-~~~~~~slnl~~~ 79 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDT-QKHELQSVNVTKL 79 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCc-cccceeecchHHH Confidence 9999876432211 00 011110 0 001000 00000000000 0000 0011222344455 Q ss_pred HHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 58 SVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 58 ~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) +++..|+-+..=|..+... +......+++-.....+...++..+.+.+..|.+++.+..+++. ..+..++ T Consensus 80 i~~~~A~ll~~e~~~i~~~---------d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~-~~i~~v~ 149 (505) T protein:vir:79 80 ASAKLASLIFNEQCQVTVS---------DETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGK-IKLAWAT 149 (505) T ss_pred HHHHHHhhhcCCCceeecC---------ChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCc-eEEEEEc Confidence 6666666665555554322 12223333333333345566777888899999999888776554 3466677 Q ss_pred cceeEEEEcCCCcccceee------------------E-------EEEEeee-----ccc--cee--------------- Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRKVF------------------E-------AYDIDAD-----GNE--VLL--------------- 170 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~~~------------------~-------~y~~~~~-----~~~--~~~--------------- 170 (457) |..+.++....++.....+ . .|.+... ... +.. T Consensus 150 ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 229 (505) T protein:vir:79 150 ADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQ 229 (505) T ss_pred CCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcc Confidence 7776654333332211100 0 0111000 000 000 Q ss_pred EEe---ccceEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEE-----ecCCCCCHHHH Q lcl|Aclame:pro 171 GWF---TPRDVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVV-----EVPGTMSEEGL 238 (457) Q Consensus 171 ~~~---~~~evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~-----~~~~~~~~e~~ 238 (457) ..+ +---..|++.+.+. ..++|+|.+..+...|...+........-|+.|... .++ ........+.. T Consensus 230 ~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~-i~v~~~~l~~~~~~~~~~~ 308 (505) T protein:vir:79 230 VKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRR-LIVPAEWLKTGSSYGGQAS 308 (505) T ss_pred eeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccc-eeechHHhcccCCCCcccc Confidence 000 11123455443222 235899999999999998888777777777765443 222 11111111100 Q ss_pred HHHHHHH---HHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 239 ARAREAW---RAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 239 ~~~~~~~---~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) ......+ ...|... ..-+++..++.++....+-++.+......++|+...|+++..+|....+..++..+. T Consensus 309 ~~~~~~fd~~~~~y~~~------~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 382 (505) T protein:vir:79 309 ETHPPMFDPDETVYQAM------YGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVV 382 (505) T ss_pred cccccCCCccceeeeec------cCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHH Confidence 0000000 0001110 001123457777777777788899999999999999999999997665544332111 Q ss_pred H----------HHHHHHHHHHhhHHHHHHHHHHhhhcCcc-------ccccceEEEecchhhhccHHHHHHHHHHHHhCC Q lcl|Aclame:pro 316 E----------QNIAFTMFSLRPWLERIEAGFNRLLFAET-------ADRFRFVKFNLDEIKRGAPKERMELWSLGLQNG 378 (457) Q Consensus 316 ~----------~~~~~~~~~l~P~~~~ie~~l~~~ll~~~-------~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g 378 (457) . .....++.+|..++..|-.......+... ......+.+++++-+..|.++..+.+.+++.+| T Consensus 383 s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~G 462 (505) T protein:vir:79 383 TNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQ 462 (505) T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcC Confidence 1 11222333444444333332221111111 112346778888888999999999999999999 Q ss_pred CcCHHHHHHHh-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 379 IYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 379 ~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457) +|+.-+++... |+ ++++.++-+ ..+.. .+.. .. ++.....|+ T Consensus 463 i~s~e~~l~~~~~~---~eeea~~el-----~ri~~---E~~~-~~-------------p~~~~~gg~ 505 (505) T protein:vir:79 463 VMPKKQFLMRNYGL---DEEEADEWL-----AQIDA---ENST-AE-------------PEFNQFGGD 505 (505) T ss_pred CCCHHHHHHhcCCC---ChHHHHHHH-----HHHHH---hccc-cC-------------CCchhccCC Confidence 99998887653 43 232222111 11111 0000 00 111111111 No 173 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.99 E-value=1.8e-09 Score=68.57 Aligned_cols=406 Identities=9% Similarity=0.010 Sum_probs=184.7 Q ss_pred hhhhhhccccc--------ccccccc---cccccc------cchhhhc------cccccc--CccccCHHHHhccHHHHH Q lcl|Aclame:pro 3 FWSALFGRGHS--------PALDAAE---GRAWEP------YDPSIYN------LGATAS--SGERVTPHDALQVSAVFA 57 (457) Q Consensus 3 ~~~~l~~~~~~--------~~~~~~~---~~~~~~------~~~~~~~------~~~~~~--~~~~v~~~~~~~~~~v~~ 57 (457) ||++|+.+... ....... ....++ ..+..+. +..... .+.... ...+....... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~-~~~~~~n~~k~ 79 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVN-RRQLSMNLPKV 79 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccc-cceeecchHHH Confidence 33322211110 0000000 000000 0000000 000000 000000 11233455667 Q ss_pred HHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 58 SVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 58 ~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) +++..|+-+.+-|..+...+ ......+++-.....+.+-+..++.+.+.+|.+|+.+..+..+-..+..++ T Consensus 80 i~~~~a~~l~~~p~~i~~~d---------~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~ 150 (496) T protein:vir:38 80 TAKYMSKLLFNEKVKINIDD---------KAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFAT 150 (496) T ss_pred HHHHHhhhhhCCcceEeeCC---------hHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEc Confidence 78888888877777664322 222233333333344667778889999999999999988754445677888 Q ss_pred cceeEEEEcCCCcccceeeE--------E-------------EEE-----eeecccceeEEe------------------ Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRKVFE--------A-------------YDI-----DADGNEVLLGWF------------------ 173 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~~~~--------~-------------y~~-----~~~~~~~~~~~~------------------ 173 (457) |.++.+.....+......+. . |.+ ...........+ T Consensus 151 ~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 230 (496) T protein:vir:38 151 ADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDF 230 (496) T ss_pred ccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCC Confidence 88887655544433211110 0 000 000000000000 Q ss_pred ccceEEEeccCC----ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEec-----CCCCCHHHHHHHHHH Q lcl|Aclame:pro 174 TPRDVLHIPGMM----LPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEV-----PGTMSEEGLARAREA 244 (457) Q Consensus 174 ~~~evih~~~~~----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~-----~~~~~~e~~~~~~~~ 244 (457) +.--+.|++.+- .....+|+|.+..+...++..+.+.....+-|+. +.+..++.. ....+.+....+... T Consensus 231 ~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~-~~~~i~v~~~~l~~~~~~~g~~~~~~~~~ 309 (496) T protein:vir:38 231 TRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKKKVLVPSSFVKTAVNLDGSTTQYFDST 309 (496) T ss_pred CcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh-cccceecchHHhhccCCCCCccccCCCCc Confidence 001122333221 1234679999999999998888776666666665 344443310 000000000000000 Q ss_pred HHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH---- Q lcl|Aclame:pro 245 WRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA---- 320 (457) Q Consensus 245 ~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~---- 320 (457) ... +. .....-.+++..++.+......-++.+..+...++|+...|+||..+|...++..++..+...... T Consensus 310 ~~~-~~----~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~ 384 (496) T protein:vir:38 310 DEA-FF----LYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQT 384 (496) T ss_pred cce-EE----EeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHH Confidence 000 00 000011122334666665555566788888999999999999999999766554433222112211 Q ss_pred ------HHHHHHhhHHHHHHHHHHhhhc-CccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh-CCC Q lcl|Aclame:pro 321 ------FTMFSLRPWLERIEAGFNRLLF-AETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE-DMT 392 (457) Q Consensus 321 ------~~~~~l~P~~~~ie~~l~~~ll-~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~-G~~ 392 (457) .++.+|..++..+-...+.... .........+.+.++.-+..|..+.++.+.+++.+|+++.-.++... |.+ T Consensus 385 ~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~ 464 (496) T protein:vir:38 385 KNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNIT 464 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCC Confidence 2223333333333322221111 11112234567777777888999999999999999999988887643 332 Q ss_pred CCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 393 PLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 393 p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) +++.++-+ ......+.. ..+.+......++++ T Consensus 465 ---d~ea~~el--------~ri~~E~~~---~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 465 ---EAEADEWA--------EMLAKEKQA---EMPNNDMNGIFGEEE 496 (496) T ss_pred ---hHHHHHHH--------HHHHHhhhc---cCccccccCCCCCCC Confidence 22222111 111110000 000000000111111 No 174 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=98.96 E-value=5.9e-09 Score=65.71 Aligned_cols=407 Identities=10% Similarity=0.036 Sum_probs=187.7 Q ss_pred Cchhhhhhccccc---c----cccc-cccc--cccccc------h-hhh--ccccccc--CccccCHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHS---P----ALDA-AEGR--AWEPYD------P-SIY--NLGATAS--SGERVTPHDALQVSAVFASV 59 (457) Q Consensus 1 Mg~~~~l~~~~~~---~----~~~~-~~~~--~~~~~~------~-~~~--~~~~~~~--~~~~v~~~~~~~~~~v~~~i 59 (457) ||||+++.+...+ . .... .... ..++.. + .++ ....... .......+...+......++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 9999876443211 0 0000 0000 001000 0 000 0000000 00001112223334555566 Q ss_pred HHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccc Q lcl|Aclame:pro 60 RLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPT 139 (457) Q Consensus 60 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~ 139 (457) +.+|+-+..-|..+... +......+++--....+...++..+.+.+..|.+++.+..+++.+ .+..+++. T Consensus 81 ~~~A~lv~~e~~~i~~~---------d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~-~I~~v~ad 150 (500) T protein:vir:30 81 KKIASLVFNEQAEIKVD---------DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKV-RVAFVQAP 150 (500) T ss_pred HHHhhhhcCCcceEecC---------ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCce-EEEEEcCC Confidence 66666665555444321 122233333333333456667778888899999998887776553 46677777 Q ss_pred eeEEEEcCCCcccceee------------------E--------EEEEeeec-----c--cceeE---Eec---cc---- Q lcl|Aclame:pro 140 KIHVHMVMVDGLRRKVF------------------E--------AYDIDADG-----N--EVLLG---WFT---PR---- 176 (457) Q Consensus 140 ~v~~~~~~~~~~~~~~~------------------~--------~y~~~~~~-----~--~~~~~---~~~---~~---- 176 (457) .+.++....++...... . .|.+.... . -+... .+. +. T Consensus 151 ~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~ 230 (500) T protein:vir:30 151 VFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKV 230 (500) T ss_pred eeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEe Confidence 77654333222211000 0 01100000 0 00000 000 00 Q ss_pred ------eEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-----cCCC-CCHHHHHH Q lcl|Aclame:pro 177 ------DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVE-----VPGT-MSEEGLAR 240 (457) Q Consensus 177 ------evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~-----~~~~-~~~e~~~~ 240 (457) -..|++.+.+. +.++|+|.+..+...|...+........-|+.|. ...++. .... .+.+.... T Consensus 231 ~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~~ 309 (500) T protein:vir:30 231 TDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVPR 309 (500) T ss_pred ccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccCC Confidence 12244332221 3457999999999999988888777777777643 333331 1110 01110000 Q ss_pred HHHHHH-HHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH--- Q lcl|Aclame:pro 241 AREAWR-AANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE--- 316 (457) Q Consensus 241 ~~~~~~-~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~--- 316 (457) ..-... ..+.... .-.+++..++.++....+-++.+......++|+...|+++..+|...++..+...+.. T Consensus 310 ~~~d~~~~~~~~~~-----~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~ 384 (500) T protein:vir:30 310 PRFESDQNVYIRMG-----GRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENS 384 (500) T ss_pred cccCCCcceEEEcC-----CCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHH Confidence 000000 0000000 0012234466666666677889999999999999999999999987665543322111 Q ss_pred -------HHHHHHHHHHhhHHHHHHHHHHh-hhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 317 -------QNIAFTMFSLRPWLERIEAGFNR-LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAA 388 (457) Q Consensus 317 -------~~~~~~~~~l~P~~~~ie~~l~~-~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~ 388 (457) .....++.+|..++..|-..... .+....-.....+.++++.-...|.++.++.+.+++.+|+|+.-+++.+ T Consensus 385 ~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~ 464 (500) T protein:vir:30 385 DTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQK 464 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHh Confidence 11222333444444433322221 1111111233457788888888999999999999999999999998755 Q ss_pred h-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 389 E-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 389 ~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) . |++ +++.++-+. .+... ..+.. +..++...--+| T Consensus 465 ~~g~~---eeea~~~l~-----~i~~E----~~~~~--------~~~~~~~~~~g~ 500 (500) T protein:vir:30 465 VLNVT---EEKAQEIAA-----EINTG----IVDEI--------NQQRTDTHLYGE 500 (500) T ss_pred cCCCC---HHHHHHHHH-----HHHHh----ccccC--------CCCCccccccCC Confidence 4 543 222222111 11000 00000 000000000000 No 175 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=98.96 E-value=5.9e-09 Score=65.71 Aligned_cols=407 Identities=10% Similarity=0.036 Sum_probs=187.7 Q ss_pred Cchhhhhhccccc---c----cccc-cccc--cccccc------h-hhh--ccccccc--CccccCHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHS---P----ALDA-AEGR--AWEPYD------P-SIY--NLGATAS--SGERVTPHDALQVSAVFASV 59 (457) Q Consensus 1 Mg~~~~l~~~~~~---~----~~~~-~~~~--~~~~~~------~-~~~--~~~~~~~--~~~~v~~~~~~~~~~v~~~i 59 (457) ||||+++.+...+ . .... .... ..++.. + .++ ....... .......+...+......++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 9999876443211 0 0000 0000 001000 0 000 0000000 00001112223334555566 Q ss_pred HHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccc Q lcl|Aclame:pro 60 RLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPT 139 (457) Q Consensus 60 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~ 139 (457) +.+|+-+..-|..+... +......+++--....+...++..+.+.+..|.+++.+..+++.+ .+..+++. T Consensus 81 ~~~A~lv~~e~~~i~~~---------d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~-~I~~v~ad 150 (500) T protein:vir:98 81 KKIASLVFNEQAEIKVD---------DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKV-RVAFVQAP 150 (500) T ss_pred HHHhhhhcCCcceEecC---------ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCce-EEEEEcCC Confidence 66666665555444321 122233333333333456667778888899999998887776553 46677777 Q ss_pred eeEEEEcCCCcccceee------------------E--------EEEEeeec-----c--cceeE---Eec---cc---- Q lcl|Aclame:pro 140 KIHVHMVMVDGLRRKVF------------------E--------AYDIDADG-----N--EVLLG---WFT---PR---- 176 (457) Q Consensus 140 ~v~~~~~~~~~~~~~~~------------------~--------~y~~~~~~-----~--~~~~~---~~~---~~---- 176 (457) .+.++....++...... . .|.+.... . -+... .+. +. T Consensus 151 ~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~ 230 (500) T protein:vir:98 151 VFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKV 230 (500) T ss_pred eeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEe Confidence 77654333222211000 0 01100000 0 00000 000 00 Q ss_pred ------eEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-----cCCC-CCHHHHHH Q lcl|Aclame:pro 177 ------DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVE-----VPGT-MSEEGLAR 240 (457) Q Consensus 177 ------evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~-----~~~~-~~~e~~~~ 240 (457) -..|++.+.+. +.++|+|.+..+...|...+........-|+.|. ...++. .... .+.+.... T Consensus 231 ~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~~ 309 (500) T protein:vir:98 231 TDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVPR 309 (500) T ss_pred ccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccCC Confidence 12244332221 3457999999999999988888777777777643 333331 1110 01110000 Q ss_pred HHHHHH-HHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH--- Q lcl|Aclame:pro 241 AREAWR-AANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE--- 316 (457) Q Consensus 241 ~~~~~~-~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~--- 316 (457) ..-... ..+.... .-.+++..++.++....+-++.+......++|+...|+++..+|...++..+...+.. T Consensus 310 ~~~d~~~~~~~~~~-----~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~ 384 (500) T protein:vir:98 310 PRFESDQNVYIRMG-----GRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENS 384 (500) T ss_pred cccCCCcceEEEcC-----CCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHH Confidence 000000 0000000 0012234466666666677889999999999999999999999987665543322111 Q ss_pred -------HHHHHHHHHHhhHHHHHHHHHHh-hhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 317 -------QNIAFTMFSLRPWLERIEAGFNR-LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAA 388 (457) Q Consensus 317 -------~~~~~~~~~l~P~~~~ie~~l~~-~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~ 388 (457) .....++.+|..++..|-..... .+....-.....+.++++.-...|.++.++.+.+++.+|+|+.-+++.+ T Consensus 385 ~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~ 464 (500) T protein:vir:98 385 DTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQK 464 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHh Confidence 11222333444444433322221 1111111233457788888888999999999999999999999998755 Q ss_pred h-CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 389 E-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) Q Consensus 389 ~-G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) . |++ +++.++-+. .+... ..+.. +..++...--+| T Consensus 465 ~~g~~---eeea~~~l~-----~i~~E----~~~~~--------~~~~~~~~~~g~ 500 (500) T protein:vir:98 465 VLNVT---EEKAQEIAA-----EINTG----IVDEI--------NQQRTDTHLYGE 500 (500) T ss_pred cCCCC---HHHHHHHHH-----HHHHh----ccccC--------CCCCccccccCC Confidence 4 543 222222111 11000 00000 000000000000 No 176 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.96 E-value=2.9e-09 Score=67.35 Aligned_cols=414 Identities=14% Similarity=0.134 Sum_probs=171.9 Q ss_pred Cc---------hhhhhhcccccc--cccccccccccccchhhhcccccccCccccCH--HH-HhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MG---------FWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNLGATASSGERVTP--HD-ALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg---------~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-~~~~~~v~~~i~~ia~~i 66 (457) +| ++..|....... .... ..+++.... .....+..+.. .. .....+...+|+.++..+ T Consensus 6 ~~~~e~~~~~~~~~~l~~~~~~~~~r~~~-l~~YY~G~~-------~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l 77 (486) T protein:vir:42 6 PGMEEIEDPAVVREEMISAFEDASKDLAS-NTSYYDAER-------RPEAIGVTVPREMQQLLAHVGYPRLYVDSVAERQ 77 (486) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHHhcccC-------cchhcccccchhHhhhhhccchHHHHHHHHHhhh Confidence 11 122332221111 0000 000110000 00000111111 11 112345666777777665 Q ss_pred ccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--------CceeEEEEecc Q lcl|Aclame:pro 67 ATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--------PNIAGLDVLDP 138 (457) Q Consensus 67 a~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--------g~~~~~~~l~p 138 (457) --.++.+ .++. .....+..++.. | ........+..+++.+|.+|+.+.++. .....+.+++| T Consensus 78 ~~~g~~~---~~~~---~~~~~~~~i~~~-N---~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p 147 (486) T protein:vir:42 78 AVEGFRL---GDAD---EADEELWQWWQA-N---NLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPP 147 (486) T ss_pred cccceec---CCCc---hhHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecc Confidence 4444432 1111 112223344333 2 234566778899999999999987652 22345677889 Q ss_pred ceeEEEEcCCCcccceeeEEEEEeeeccc-ceeEEeccc-------------------------eEEEeccCCccCCccc Q lcl|Aclame:pro 139 TKIHVHMVMVDGLRRKVFEAYDIDADGNE-VLLGWFTPR-------------------------DVLHIPGMMLPGDFVG 192 (457) Q Consensus 139 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~-------------------------evih~~~~~~~~~~~G 192 (457) ..+.++.+...+........| +....+. .....+.++ -|+++.+.....+.+| T Consensus 148 ~~~~~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G 226 (486) T protein:vir:42 148 TRMHAEIDPRINRVSKAIRVA-YDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYG 226 (486) T ss_pred cceEEEEeCCCCCeEEEEEEE-EecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCC Confidence 888877764432211111111 1100000 001122222 2344433322334567 Q ss_pred cchhHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHH--HHHHHHHHHhccccccCcceecc-Ccceee Q lcl|Aclame:pro 193 CSPISY-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA--RAREAWRAANSGVDNAHRVALLT-EGAKFS 268 (457) Q Consensus 193 ~s~~~~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~ 268 (457) .|-+.. +...++....+.--......-.+.|..+++... ......+ +....|. ...+.++.++ ++.++. T Consensus 227 ~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 299 (486) T protein:vir:42 227 TSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIK-PEEIGVDSETGQTLFD------AYLARILAFEDAEGKIQ 299 (486) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCC-ccccccccccccchhh------hhhchhcccCCCCceEE Confidence 776553 334444444333333333333444555444211 1111000 0011111 1124455554 456676 Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 269 KVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 269 ~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~l~ 338 (457) ++.....+ .+++..+....+++..-++|+..+|.......|+..+..... ..+..+|.-+++.+....+ T Consensus 300 q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~ 378 (486) T protein:vir:42 300 QFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMK 378 (486) T ss_pred eecccCHH-HHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 66543322 477888888999999999999999865543334433322221 2222233333322211111 Q ss_pred hhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCCCCCCceeee---ccccccccc Q lcl|Aclame:pro 339 RLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQN--GIYSIDEVRAAEDMTPLPDGLGEKYRV---PLNLGEIGE 413 (457) Q Consensus 339 ~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~--g~~T~nE~R~~~G~~p~~~~~gd~~~~---~~n~~~~~~ 413 (457) . .........+.+.+......+..+.++++.+++++ |+++..-+++.+|+.+-+-.....+.- ......++. T Consensus 379 ~---~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~ 455 (486) T protein:vir:42 379 G---GDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGT 455 (486) T ss_pred C---CCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH Confidence 0 00011223455666677788899999999999986 677777788888875432111110000 000000000 Q ss_pred ccccccccCCCccCCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 414 EPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457) ...... .........+++.+.++.+...|+- T Consensus 456 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 456 MVDADP--TVPGSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred hhcCCC--CCCCCCCCCCCCCCCcccCCCCCCC Confidence 000000 0000000011111111111111111 No 177 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.95 E-value=1.1e-08 Score=64.29 Aligned_cols=357 Identities=12% Similarity=0.007 Sum_probs=164.5 Q ss_pred Cchhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHH--HH--hccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPH--DA--LQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) .-++.+|.++........ .....+...- .....+..+-.+ .. +...+..-+|+.++..+.=-.|. T Consensus 3 ~~~i~~L~~~~~~~~~r~~~~~~yY~g~~-------~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~--- 72 (409) T protein:vir:94 3 EKGIGYLRFKLSVHKRRAEMRYDQYAMKY-------VDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFE--- 72 (409) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccC-------chhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCccc--- Confidence 223444433321111000 0000111000 000000111111 11 12345556666666544322221 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) . .+..+..++.. .+..........+.+++|++|+.+..+..+-..+.+++|..+.++.+...+.. T Consensus 73 ~--------~d~~l~~i~~~----N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~~~~--- 137 (409) T protein:vir:94 73 N--------DDFTVNEIFEE----NNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPITGLL--- 137 (409) T ss_pred C--------CchHHHHHHHh----cChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCCCce--- Confidence 1 11223344433 22345566778889999999999987753345678899999988876643321 Q ss_pred eEEEEEeeecccc---eeEEeccc----------------------eEEEeccCCccCCccccchh-HHHHHHHHHHHHH Q lcl|Aclame:pro 156 FEAYDIDADGNEV---LLGWFTPR----------------------DVLHIPGMMLPGDFVGCSPI-SYARESIGLALAA 209 (457) Q Consensus 156 ~~~y~~~~~~~~~---~~~~~~~~----------------------evih~~~~~~~~~~~G~s~~-~~~~~~i~~~~~~ 209 (457) ...|.+....... ....+.++ -|+++.+....+..+|.|-+ +.+...++..+.. T Consensus 138 ~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~ 217 (409) T protein:vir:94 138 TEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRT 217 (409) T ss_pred eeeEEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHH Confidence 1112221111100 00112222 23444433333456888855 3333333433333 Q ss_pred HHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-----CcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~g~~~~~~~~s~~d~~~~e~~~ 284 (457) .-......+=.+.|.-++..- ..+.+..+.++.... +++.++ ++.++.++....- ..|++.++ T Consensus 218 ~~~~~~~~e~~a~pqr~i~G~-d~d~~~~~~~~~~~~----------~i~~~~~d~dg~~~~v~q~~~~~l-~~~~~~l~ 285 (409) T protein:vir:94 218 LERADVTAEFYSFPQKYVTGL-SDDAEPMETWKATVS----------SMLQFTKDEDGDKPTLGQFTQPSM-SPFTEQLR 285 (409) T ss_pred HHHHHHHHHHhcChhheeEec-CCCCcccchhhhhHH----------HhhcCCCCCCCCCceEEecCCCCh-hHHHHHHH Confidence 322222223344455555421 111122223332222 233332 3355655543322 24889999 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHh------hhcCccc---cccceEEEe Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNR------LLFAETA---DRFRFVKFN 355 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~------~ll~~~~---~~~~~~~f~ 355 (457) ....++|..-++|++.+|.......|+..+..+...+... ..-..+.+.+.+.+ .+..... .....+++. T Consensus 286 ~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~-a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~ 364 (409) T protein:vir:94 286 TAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLA-GRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPK 364 (409) T ss_pred HHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEE Confidence 9999999999999999997665334443333333222222 11122222222221 1111111 111223333 Q ss_pred cchhhhcc---HHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 356 LDEIKRGA---PKERMELWSLGLQNG--IYSIDEVRAAEDMTPLP 395 (457) Q Consensus 356 ~~~~~~~d---~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~ 395 (457) +..+...+ ..+.++++.|++++| ++..+-+++++|+..-+ T Consensus 365 W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 365 WEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred eccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 44333333 456778899999998 55667899999998643 No 178 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=98.92 E-value=1e-08 Score=64.43 Aligned_cols=414 Identities=11% Similarity=-0.049 Sum_probs=184.4 Q ss_pred Cchhhhhhcccccccccccccccc-----------ccc-chh-hhcccccccCc--cccCHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAW-----------EPY-DPS-IYNLGATASSG--ERVTPHDALQVSAVFASVRLLSET 65 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~-----------~~~-~~~-~~~~~~~~~~~--~~v~~~~~~~~~~v~~~i~~ia~~ 65 (457) ||||+.+....+..-......... ... .+. .......+... ..+.. .-++.+....+++.+|+- T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~l~~~i~~~~A~l 79 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHD-KLMNSGTGNEIVVVAAEY 79 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCcccc-ccccCChHHHHHHHHHHh Confidence 999987643322211111110000 000 000 00000011110 11111 123344456677778877 Q ss_pred hccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEE Q lcl|Aclame:pro 66 IATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHM 145 (457) Q Consensus 66 ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~ 145 (457) +..-+..+.....+.. .+..+...+++--....+..-+...+.+.+..|.+++.+..++|++ .+..+++..+.+.. T Consensus 80 l~~e~~~i~v~~~~~~---d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~-~i~~v~ad~~~P~~ 155 (518) T protein:vir:78 80 ISGKPLSIDVTGVNGS---KDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQFWIDF 155 (518) T ss_pred hcCCCceEEecCcccc---CcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCee-EEEEEcCCeeEEEe Confidence 7665555433221111 1122222222222222344556667788888999888876666553 56677777776543 Q ss_pred cCCCcccceee----------EEE---------------------EEee-----eccccee-------E----Eecc--- Q lcl|Aclame:pro 146 VMVDGLRRKVF----------EAY---------------------DIDA-----DGNEVLL-------G----WFTP--- 175 (457) Q Consensus 146 ~~~~~~~~~~~----------~~y---------------------~~~~-----~~~~~~~-------~----~~~~--- 175 (457) .. +......+ ..| .+.. ..+.... . ...+ T Consensus 156 ~~-g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 234 (518) T protein:vir:78 156 KN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) T ss_pred ec-CcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccC Confidence 21 11100000 000 0000 0000000 0 0000 Q ss_pred -----------c-eEEEeccCCcc----CCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEec---CCC---C Q lcl|Aclame:pro 176 -----------R-DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEV---PGT---M 233 (457) Q Consensus 176 -----------~-evih~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~---~~~---~ 233 (457) . -+.|++...+. +..+|+|.+..+...|...+........-|+. +.+..++.. +.. . T Consensus 235 ~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~~~~~ 313 (518) T protein:vir:78 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKS 313 (518) T ss_pred ccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeechhHhccCCCCC Confidence 0 12233322111 34579999999999999998888888887876 455544421 000 0 Q ss_pred CHHHHHHHHHHHHHHhccccccCcceeccCcc----eeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRVALLTEGA----KFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~----~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) .......+.. -.+.|.... .-.+.|. .++.++..-.+.++.+..+...+.|....|++|..+|... +.. T Consensus 314 ~~~~~~~fd~-~~~~y~~i~-----~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~-~~~ 386 (518) T protein:vir:78 314 TDKEEWSMNV-DEDYFMQFK-----GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REV 386 (518) T ss_pred CCccccccCC-CCceEEEec-----CcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCccc-ccc Confidence 0000000000 000000000 0011222 2566666666778999999999999999999999998643 222 Q ss_pred ccchHHH----------HHHHHHHHHHhhHHHHHHHHHHhhhcCcc---ccccceEEEecchhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 310 WGSGLAE----------QNIAFTMFSLRPWLERIEAGFNRLLFAET---ADRFRFVKFNLDEIKRGAPKERMELWSLGLQ 376 (457) Q Consensus 310 ~~~~~e~----------~~~~~~~~~l~P~~~~ie~~l~~~ll~~~---~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 376 (457) ++.-+.. .....++.+|.-++..|-..+........ ......+.+++++-+..|.++.++.+.+++. T Consensus 387 TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~ 466 (518) T protein:vir:78 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHh Confidence 3221111 11222233333333333222221111111 1123457888988899999999999999999 Q ss_pred CCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 377 NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 377 ~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) +|+|++.++.+++... ..+++.++-+ ..+.... .....+.+++.. +-..+|. T Consensus 467 aGimS~e~~i~~~~~~-~~deea~~e~-----~ri~~E~---~~~~~~~p~~~~-------------g~~~~~g 518 (518) T protein:vir:78 467 ALAMSVEEKVKLIHPK-WEDEEIQAEV-----KRIYLEN---AIGEVPDPEAIG-------------GMETKGG 518 (518) T ss_pred cCCCCHHHHHHHhCCC-CCHHHHHHHH-----HHHHHHh---cccCCCCCcccc-------------CCCCCCC Confidence 9999998865554321 2222222111 1111111 000000000000 0000000 No 179 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=98.91 E-value=4.4e-09 Score=66.41 Aligned_cols=405 Identities=9% Similarity=0.053 Sum_probs=183.9 Q ss_pred hhhhhhcccc-----------------ccccccccc--ccccccchhhh-----ccccccc--CccccCHHHHhccHHHH Q lcl|Aclame:pro 3 FWSALFGRGH-----------------SPALDAAEG--RAWEPYDPSIY-----NLGATAS--SGERVTPHDALQVSAVF 56 (457) Q Consensus 3 ~~~~l~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~--~~~~v~~~~~~~~~~v~ 56 (457) ||++|+.+.. .+.+..... .....+ ..++ .+..... .+.... +..+...... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~-~~~Y~g~~~~~~~~~~~~~~~~~~-~~~~s~n~~~ 78 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMW-KRLYQGNYAEWHNLNYEHNGNPVN-RRQLSMNLPK 78 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHH-HHHhcCCcchhhccccccCCCccc-cceeecchHH Confidence 3332211100 000000000 000000 0000 0000000 000111 1223345556 Q ss_pred HHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEe Q lcl|Aclame:pro 57 ASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVL 136 (457) Q Consensus 57 ~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l 136 (457) .+++..|+-+.+-|..+...+ ......++.-.....+..-+..++...+..|.+|+.+..+..+-..+..+ T Consensus 79 ~iv~~~a~~l~~ep~~i~~~d---------~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v 149 (499) T protein:vir:80 79 VTAKYMSKLLFNEKVKINIDD---------ETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFA 149 (499) T ss_pred HHHHHHHHhhhCCcceEeeCC---------HHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEE Confidence 677777877777776654322 22333333333334456667778888999999999998775444567788 Q ss_pred ccceeEEEEcCCCcccceeeE------------------------EEEEee-----ecccceeEEecc------------ Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFE------------------------AYDIDA-----DGNEVLLGWFTP------------ 175 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~------------------------~y~~~~-----~~~~~~~~~~~~------------ 175 (457) +|.++.+.....+......+. .|.+.. .........++. T Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~ 229 (499) T protein:vir:80 150 TADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVP 229 (499) T ss_pred cCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCcee Confidence 888877654443333211110 011100 000000000000 Q ss_pred ------ceEEEeccCCc----cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-----cCCCCCHHHHHH Q lcl|Aclame:pro 176 ------RDVLHIPGMML----PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVE-----VPGTMSEEGLAR 240 (457) Q Consensus 176 ------~evih~~~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~-----~~~~~~~e~~~~ 240 (457) --++|++.+-+ .+.++|+|.+..+...|+..+........-|+.+ ....++. .....+.+.... T Consensus 230 ~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~g~~~~~ 308 (499) T protein:vir:80 230 LPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLG-KKKVLVPSSFVKTAVNLDGSTTQY 308 (499) T ss_pred ecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhc-ccceecchhhhhccCCCCCCcccC Confidence 01334444321 1345799999999999998887777777777654 3333331 111111000000 Q ss_pred HHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH Q lcl|Aclame:pro 241 AREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) Q Consensus 241 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~ 320 (457) +.... +.+.. .....-+++-.++.++.....-++.+..+...++|....|+++..+|....+..++..+...... T Consensus 309 ~~~~~-~~~~~----~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~ 383 (499) T protein:vir:80 309 FDSTD-EAFFL----YQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSE 383 (499) T ss_pred CCccc-ceeeE----eeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHH Confidence 00000 00000 00000112224666666655666788888999999999999999999766554433222111111 Q ss_pred ----------HHHHHHhhHHHHHHHHHHhhhcCcc-ccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 321 ----------FTMFSLRPWLERIEAGFNRLLFAET-ADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE 389 (457) Q Consensus 321 ----------~~~~~l~P~~~~ie~~l~~~ll~~~-~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~ 389 (457) .++.+|..++..|-...+...+... ......+.++++.-+..|.++.++.+.+++.+|+|+.-.++... T Consensus 384 l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~ 463 (499) T protein:vir:80 384 TYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRA 463 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhc Confidence 1122222222222222111111111 12335677888888888999999999999999999998887653 Q ss_pred -CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCc Q lcl|Aclame:pro 390 -DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEP 439 (457) Q Consensus 390 -G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (457) |.+ ++++++-+. .+. ..+ +...+..+.. ...++++ T Consensus 464 ~~~~---d~ea~~el~-----~i~---~E~-~~~~~~~d~~---g~~ge~e 499 (499) T protein:vir:80 464 WNIT---EAEADEWAE-----MLA---KEK-QAEIPNNDMT---GIFGEEE 499 (499) T ss_pred CCCC---hHHHHHHHH-----HHH---HHh-hcCCCCCCcc---ccCCCCC Confidence 432 222221110 000 000 0000000000 0000000 No 180 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.91 E-value=6.5e-09 Score=65.48 Aligned_cols=424 Identities=14% Similarity=0.067 Sum_probs=173.9 Q ss_pred Cchh----hhhhccccccccc-ccccccccccchhhhcccccccCccccCH---HHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFW----SALFGRGHSPALD-AAEGRAWEPYDPSIYNLGATASSGERVTP---HDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~----~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) |+-- .+|.......... ......+...-. + ...+..+.. ..-........+|+..+..+--.++. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~----i---~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~ 73 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR----L---KTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFR 73 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c---hhcccccchhhhhhhhhcchHHHHHHHHHhhhccCcee Confidence 5542 2222211110000 000001100000 0 000001111 01112345556666666655433432 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec------CCceeEEEEeccceeEEEEc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA------GPNIAGLDVLDPTKIHVHMV 146 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~------~g~~~~~~~l~p~~v~~~~~ 146 (457) + .++. .....+..++.. .........+..+.+.+|.+|..+.++ ......+.+++|..+.++.+ T Consensus 74 ~---~~d~---~~~~~l~~i~~~----N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D 143 (480) T protein:vir:78 74 I---SEDS---EGLEELWNWWQA----NDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELD 143 (480) T ss_pred c---CCCc---hhHHHHHHHHHh----cCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEc Confidence 2 1111 112233344433 234566778889999999999888652 22334577889998888876 Q ss_pred CCCcccceeeEEEEEeeeccc--ceeEEeccc-----------------------------eEEEeccCCccCCccccch Q lcl|Aclame:pro 147 MVDGLRRKVFEAYDIDADGNE--VLLGWFTPR-----------------------------DVLHIPGMMLPGDFVGCSP 195 (457) Q Consensus 147 ~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~-----------------------------evih~~~~~~~~~~~G~s~ 195 (457) ............|........ .....+.++ -|+|+.+....+..+|.|- T Consensus 144 ~~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sd 223 (480) T protein:vir:78 144 PRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSE 223 (480) T ss_pred CCCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccc Confidence 542211111111111000000 001111222 3455544433345678776 Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-CcceeeeccCC Q lcl|Aclame:pro 196 ISY-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-EGAKFSKVAMS 273 (457) Q Consensus 196 ~~~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~~~s 273 (457) +.. +...++....+.--......-.+.|..+++. ....+...+.....+.. ..+.++.++ ++.++.++... T Consensus 224 i~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 296 (480) T protein:vir:78 224 ISPELRKVTDAASRTLMNLQSASQILGTPLRVISG-VTTDELTNDGENTTLDI------YYGRILTLASEAAKISEFKAA 296 (480) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhC-CCccccccccccchhhh------hhhhhccCCCCCceEEecCcc Confidence 653 4455555444443333334444455555442 11111111111111111 113344443 34666666544 Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh------hcCccc- Q lcl|Aclame:pro 274 PDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL------LFAETA- 346 (457) Q Consensus 274 ~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~------ll~~~~- 346 (457) ..+ .+++..+....+|+..-++|+..+|.......|+..+..+...+... ..-....+...|.+. +..... T Consensus 297 ~~~-~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k-~~~~~~~f~~~l~~~~rl~~~~~~~~~~ 374 (480) T protein:vir:78 297 ELR-NFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKM-AERKGRIFGGAWERAMRIAMQIMGREVT 374 (480) T ss_pred CHH-HHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcc Confidence 322 47888899999999999999999986543333333222222111111 111111111122111 111111 Q ss_pred cccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCC Q lcl|Aclame:pro 347 DRFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPP 424 (457) Q Consensus 347 ~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~ 424 (457) .....+.+.+......+..+.++.+.+++.+| +++..-+++++|+.+-+-....+..........+............ T Consensus 375 ~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (480) T protein:vir:78 375 EEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADA 454 (480) T ss_pred ccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCcc Confidence 12234556666667778888899999998876 5666667888888653311111111011000111111000000000 Q ss_pred ccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 425 AIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) .+.......+++...+++......+. T Consensus 455 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480) T protein:vir:78 455 --TPKPTVTETKTETQTSPSGFNRTKTR 480 (480) T ss_pred --ccCCCCCCCCCccCCCcccCCCcCCC Confidence 00000001111111111111111222 No 181 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.90 E-value=1.8e-08 Score=63.09 Aligned_cols=414 Identities=11% Similarity=0.015 Sum_probs=185.6 Q ss_pred Cchhhhhhccccccccc--ccccccccccchhhhccccccc-CccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEec Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD--AAEGRAWEPYDPSIYNLGATAS-SGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKR 77 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 77 (457) ...++++..+....... ....+.+....... ...... ....--...-+.++....+++..+.-+.+-|+.+...+ T Consensus 32 ~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i--~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d 109 (481) T protein:vir:10 32 EENLRNFISRHQTEQVPRLEMLESYYLNRNTDI--LAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQD 109 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccCccccccccccccceeecchHHHHHHHHHhhhccCCceEecCC Confidence 11122222211000000 00000000000000 000000 00000001113456777888888888888887654322 Q ss_pred cCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccce-ee Q lcl|Aclame:pro 78 GGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRK-VF 156 (457) Q Consensus 78 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~-~~ 156 (457) +. ....+..++.. .....+...+..+.+.+|.+|+.+..+..+...+..++|..+.++.+........ .. T Consensus 110 ~~-----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i 180 (481) T protein:vir:10 110 NQ-----TNDKIIELNDL----NDADEVNSDLALNLSIYGRAYEIVYRDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGV 180 (481) T ss_pred hh-----HHHHHHHHHHh----cChhHHHHHHHHHHHhcCeEEEEEEeCCCCeEEEEEEcccceEEEEcCCCCCceEEEE Confidence 21 12233344433 2355778888999999999999988775455567889999998877654322111 11 Q ss_pred EEEEEeeeccc--ceeEEeccceEEEeccCC--------------------ccCCccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGNE--VLLGWFTPRDVLHIPGMM--------------------LPGDFVGCSPISYARESIGLALAAQKYGA 214 (457) Q Consensus 157 ~~y~~~~~~~~--~~~~~~~~~evih~~~~~--------------------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~ 214 (457) ..|......+. .....+.++.|.|+.... ..+...|.|-+..+...++.......-.. T Consensus 181 ~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~ 260 (481) T protein:vir:10 181 RYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTA 260 (481) T ss_pred EEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHH Confidence 11211111110 111233344444432211 01234678888877777776666555555 Q ss_pred HHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 215 HFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIF 294 (457) Q Consensus 215 ~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~f 294 (457) ..+.....|..++......+++....++..-.- .... .......+++.++..+........+.+..+.+.+.|+..- T Consensus 261 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s 337 (481) T protein:vir:10 261 NYMTDLNDAMLAIIGNVDLDSEDAKAFRDANMI--HLEP-GTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYT 337 (481) T ss_pred HHHHHhcCceeEeecCcCCCccchhhhhhccce--eccc-cccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHh Confidence 556666677777764434444444433331100 0000 0011112233444444444445566777888899999999 Q ss_pred CCCHHHhccccccccccchHHHHHHHH----------HHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccH Q lcl|Aclame:pro 295 GVPPHLISDATNSTSWGSGLAEQNIAF----------TMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 295 gvpp~~lg~~~~~~~~~~~~e~~~~~~----------~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~ 364 (457) ++|....+... ++.|+...+.....+ +..++.-.++.+...++..- ........+.+.+......+. T Consensus 338 ~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~~~~i~v~f~~~~~~~~ 414 (481) T protein:vir:10 338 NTPDLNDEQFS-GVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTG--LKQHNYAELTITFTPNLPKSM 414 (481) T ss_pred CCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccccceeeEEeCCCCCcCH Confidence 99987665332 333433222221111 11122222221211111110 011122345666777788899 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCC Q lcl|Aclame:pro 365 KERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEG 444 (457) Q Consensus 365 ~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (457) .+.++.+.++. |+++.-.+.+++++-.-+.. .+......+....+....... .+..++.++. T Consensus 415 ~~~a~~~~kl~--g~is~et~~~~l~~i~d~~~------------E~~ri~~E~~~~~~~~~~~~~----~~~~~~~~~~ 476 (481) T protein:vir:10 415 MESINAFNALS--GGVSESTRLSLLDFIDNPKE------------ELEKMQEEEAQREKQADKRGY----GEAFENHLNV 476 (481) T ss_pred HHHHHHHHHHh--ccCChHHHHHhCCCCCCHHH------------HHHHHHHHHHHHHhhhhhccC----CccCCCCCCC Confidence 99999998874 78888777887765221111 111111111000000000000 0111111112 Q ss_pred Ccccc Q lcl|Aclame:pro 445 DPDEG 449 (457) Q Consensus 445 ~~~~~ 449 (457) |+++| T Consensus 477 dd~~g 481 (481) T protein:vir:10 477 DDSNG 481 (481) T ss_pred CCCCC Confidence 22222 No 182 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.88 E-value=6.4e-09 Score=65.50 Aligned_cols=440 Identities=11% Similarity=0.039 Sum_probs=190.9 Q ss_pred Cchhh-------------hhhcccccccccccccc-cccccc--hhh---hcccccccCc----cccCHHHHhccHHHHH Q lcl|Aclame:pro 1 MGFWS-------------ALFGRGHSPALDAAEGR-AWEPYD--PSI---YNLGATASSG----ERVTPHDALQVSAVFA 57 (457) Q Consensus 1 Mg~~~-------------~l~~~~~~~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~----~~v~~~~~~~~~~v~~ 57 (457) |.+|. .+++-. .+....+... ..+... ... ..+.+....+ ....++.++.+|.|.+ T Consensus 4 ~~~w~~~de~~~~~~~~~~~~~~~-~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~ 82 (533) T protein:vir:58 4 LEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) T ss_pred cchhhhhhHHHHHHHhhchhhccc-CccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcchhh Confidence 22222 222211 1111111100 001010 011 1111111111 1112344567899999 Q ss_pred HHHHHHHhhccC-----ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CCce Q lcl|Aclame:pro 58 SVRLLSETIATL-----PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GPNI 130 (457) Q Consensus 58 ~i~~ia~~ia~~-----p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~--~g~~ 130 (457) ||+.|++.+.-. |+.+..+.-+-...+. ..+..+ +++..--..++..|.+.|..|..+.-+ .+++ T Consensus 83 AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK-~kI~~l-------ldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI 154 (533) T protein:vir:58 83 VLDIIADECTIPNENGNIVDVVTKDIELAKAIL-SYLDYV-------INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) T ss_pred HHHhhhceeeEecCCCceeEeecccccccHHHH-HHHHHH-------hcchhhhhHHHHhhhhcceeEEEeccCCcccch Confidence 999999887533 3333322211111111 111122 222233445567788899999887543 4788 Q ss_pred eEEEEeccceeEEEEcCCCcccceeeEEEEEeeecccceeEEeccceEEEeccC-CccCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM-MLPGDFVGCSPISYARESIGLALAA 209 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~ 209 (457) .++..|+|..++.++.......+++...... ..........++.+.|+|+..- ...+..+++|-+..+.+.++...-+ T Consensus 155 ~elr~lDPr~i~~vr~~~t~~eyyvy~~~~~-~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmi 233 (533) T protein:vir:58 155 EKFQVVSPYIFSKRYNPETDTWYYVITDVYR-NVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM 233 (533) T ss_pred hhheecCCeeeEEEEeeccceEEEeeccccc-ccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHH Confidence 8999999999998877655433322211111 1112223356788999999764 3345678899999998888777766 Q ss_pred HHHHHHHHHccCCcceEEecC--CCC--C-HHHHHHHHHHHHHHhccccccCcc------e----ec----------cCc Q lcl|Aclame:pro 210 QKYGAHFFRNGAMPGAVVEVP--GTM--S-EEGLARAREAWRAANSGVDNAHRV------A----LL----------TEG 264 (457) Q Consensus 210 ~~~~~~~~~n~~~~~~~~~~~--~~~--~-~e~~~~~~~~~~~~~~~~~n~~~~------~----vl----------~~g 264 (457) +.+.--+--.-+.-+-++.++ .-. . ++=+..+..++++.+-=..+.|.+ + .+ +.| T Consensus 234 EDAlVIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrg 313 (533) T protein:vir:58 234 EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRA 313 (533) T ss_pred HHHHHHHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCcc Confidence 666555433333333344333 211 1 222233444444332222223333 1 11 245 Q ss_pred ceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCc Q lcl|Aclame:pro 265 AKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAE 344 (457) Q Consensus 265 ~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~ 344 (457) ..++.|... . +.-++-.++..+.+.++++||.+-++...+.+.++.-..+..+ | ..-|..+...+.+.|..+|+.. T Consensus 314 TEI~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiK-F-~KFI~rLR~rF~~ll~~qLilk 389 (533) T protein:vir:58 314 VEIDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIK-F-NNTIKRIQGFFVEELERMVRMN 389 (533) T ss_pred ceeeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHH-H-HHHHHHHHHHHHHHHhcccccc Confidence 667777643 2 5556777888999999999999999876654443322222222 3 4447778888889998888754 Q ss_pred cccccceEEEecc--hhh--hcc---HHHHHHHHHHH---HhC-----CC--cCHHHHH------HHhCCC-CCCCCCCc Q lcl|Aclame:pro 345 TADRFRFVKFNLD--EIK--RGA---PKERMELWSLG---LQN-----GI--YSIDEVR------AAEDMT-PLPDGLGE 400 (457) Q Consensus 345 ~~~~~~~~~f~~~--~~~--~~d---~~~~~~~~~~~---~~~-----g~--~T~nE~R------~~~G~~-p~~~~~gd 400 (457) ..-....|+|++. ... ..+ +..+...+..+ |.. .+ +| +|+. +..+.. -++.+.-+ T Consensus 390 ~iit~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~t-dei~~q~e~ie~E~~~~~~~~~~~~ 468 (533) T protein:vir:58 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIP-YDLKPQEEVAEAAGGGGLFDTGGFG 468 (533) T ss_pred cCcchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCC-hhhhHHHHHHHHhhcCCCCCCCCcc Confidence 4322223445443 211 011 12222222221 110 01 22 2222 212111 11111011 Q ss_pred eeeecccccccccccccccccCCCcc-CCCCCCCCCCCCcccCCC--CccccccccccCC Q lcl|Aclame:pro 401 KYRVPLNLGEIGEEPEPEPAPAPPAI-DPPAEEPADDEEPDNAEG--DPDEGETEDDDDA 457 (457) Q Consensus 401 ~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 457 (457) .=+.|.-..+. ...+...+...+. +-+...+.+.....+-.+ .+...++...+++ T Consensus 469 ~e~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~ 526 (533) T protein:vir:58 469 EETTPADFLGE--RGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) T ss_pred cccCCcccCcc--ccCcccCCCChhhHhcccCCcccccccccccccchhhhhhcCCcccC Confidence 11111111100 0000000000000 000000000000000000 0001111111112 No 183 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.88 E-value=1.9e-08 Score=62.96 Aligned_cols=399 Identities=9% Similarity=-0.055 Sum_probs=184.5 Q ss_pred Cc-----hhhhhhcccccccccccccccccccchhhh-cccccccCccccC---HHHHhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MG-----FWSALFGRGHSPALDAAEGRAWEPYDPSIY-NLGATASSGERVT---PHDALQVSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~---~~~~~~~~~v~~~i~~ia~~ia~~p~ 71 (457) +. +++.+..+...+...... ..+...-.... ............. +..-+.++....+++..+.-+.+-|+ T Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~-~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~ 98 (479) T protein:vir:79 20 STINLVKVIEHYILKHRPEKYKQGE-EYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHH-HHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCc Confidence 11 111111111100000000 00000000000 0000000000000 00113356677788888888888887 Q ss_pred EEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcc Q lcl|Aclame:pro 72 STYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGL 151 (457) Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~ 151 (457) ++-...+. ...+...+.. | ........++.+.+.+|.+|..+..+.++...+..++|..+.++.+..... T Consensus 99 ~~~~~~~~------~~~~~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~ 168 (479) T protein:vir:79 99 VFNADDDN------LTKLLNDLLG-E---EFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQR 168 (479) T ss_pred eeccCCHH------HHHHHHHHHh-c---CHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEEEEeCCCCC Confidence 76432211 1112222222 2 456667778889999999999988776555568888999988886543321 Q ss_pred -cceeeEEEEEeeeccc--ceeEEeccceEEEeccCC---------------------------------------ccCC Q lcl|Aclame:pro 152 -RRKVFEAYDIDADGNE--VLLGWFTPRDVLHIPGMM---------------------------------------LPGD 189 (457) Q Consensus 152 -~~~~~~~y~~~~~~~~--~~~~~~~~~evih~~~~~---------------------------------------~~~~ 189 (457) .......|......+. .....+.++.+.|++.-. ..+. T Consensus 169 ~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn 248 (479) T protein:vir:79 169 ELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN 248 (479) T ss_pred ceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCC Confidence 1111122221111111 111223333343332100 0122 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeee Q lcl|Aclame:pro 190 FVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSK 269 (457) Q Consensus 190 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~ 269 (457) ..|.|-+..+...++....+.....+.+...+.|-.++..-..... +.+... ...++++.++++.+++. T Consensus 249 ~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~---~~~~~~--------~~~~~~i~~~~~~~~~~ 317 (479) T protein:vir:79 249 EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL---QEFIDN--------IRYYKSIKVDGGGGVDK 317 (479) T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc---ccchhh--------hhhccceecCCCCcceE Confidence 3688889888888888877776666667777777776654221111 111111 11345566666666666 Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH----------HHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 270 VAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE----------QNIAFTMFSLRPWLERIEAGFNR 339 (457) Q Consensus 270 ~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~l~~ 339 (457) +........+....+.+.+.|...-++|..-.+. .++.|+..... .....+...+...++.+...++. T Consensus 318 l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~--~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 395 (479) T protein:vir:79 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI 395 (479) T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 6555455666777888889999998988754432 23334332221 11222333333333333333322 Q ss_pred hhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccc Q lcl|Aclame:pro 340 LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEP 419 (457) Q Consensus 340 ~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~ 419 (457) . .........+.+.+...+..+.++.++.+.++. |+++...+.+++++- +++.. .+......+. T Consensus 396 ~--~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl~--g~iS~et~l~~l~~v--~d~~~----------E~~ri~~E~~ 459 (479) T protein:vir:79 396 S--GNKSYDYKTVQITFNHSMIINEAEKIDMAAKST--GIVSDETIVSNHPWV--EDVND----------ELERLKKQED 459 (479) T ss_pred c--CCCccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCC--CCHHH----------HHHHHHHHHH Confidence 1 111122334566677777889999999988874 889888888877642 22111 1111111110 Q ss_pred ccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 420 APAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) ...+......... ++..++. T Consensus 460 ~~~~~~~~~~~~~---------------~~~~~e~ 479 (479) T protein:vir:79 460 TQKEYDDLIPNNQ---------------DGVIDET 479 (479) T ss_pred HHHHHHhccCccc---------------CCCcCcC Confidence 0000000000000 0000000 No 184 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.85 E-value=1.4e-08 Score=63.61 Aligned_cols=424 Identities=14% Similarity=0.073 Sum_probs=173.1 Q ss_pred Cchhh----hhhccccccccc-ccccccccccchhhhcccccccCccccCHH--H-HhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFWS----ALFGRGHSPALD-AAEGRAWEPYDPSIYNLGATASSGERVTPH--D-ALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~~----~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~-~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) |+-.. +|..+....... .....++...-. ....+..+..+ . -........+|+..+..+--.++. T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~-------i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~ 73 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR-------LKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFR 73 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccccccchhHhhhhhhcchHHHHHHHHHhhhccCcee Confidence 65432 222211110000 000001110000 00001111111 1 112345556677666655433332 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec------CCceeEEEEeccceeEEEEc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA------GPNIAGLDVLDPTKIHVHMV 146 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~------~g~~~~~~~l~p~~v~~~~~ 146 (457) + .++.. ....+..++.. .........+..+++.+|.+|..+.++ ......+.+++|..+.++.+ T Consensus 74 ~---~~d~~---~~~~l~~i~~~----N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D 143 (480) T protein:vir:78 74 I---SEDSE---GLEELWNWWQA----NDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELD 143 (480) T ss_pred c---CCCch---hHHHHHHHHHh----cCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEc Confidence 2 11111 12233333332 234566778889999999999888653 23334567888988888776 Q ss_pred CCCc-ccceeeEEEEEeeeccc-ceeEEecc-----------------------------ceEEEeccCCccCCccccch Q lcl|Aclame:pro 147 MVDG-LRRKVFEAYDIDADGNE-VLLGWFTP-----------------------------RDVLHIPGMMLPGDFVGCSP 195 (457) Q Consensus 147 ~~~~-~~~~~~~~y~~~~~~~~-~~~~~~~~-----------------------------~evih~~~~~~~~~~~G~s~ 195 (457) .... ........|......+. .....+.+ --|+++.+....+..+|.|- T Consensus 144 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~ 223 (480) T protein:vir:78 144 PRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSE 223 (480) T ss_pred CCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCccc Confidence 4321 11111111100000000 00011111 23455544333345678877 Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-CcceeeeccCC Q lcl|Aclame:pro 196 ISY-ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-EGAKFSKVAMS 273 (457) Q Consensus 196 ~~~-~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~~~s 273 (457) +.. +...++....+..-......-.+.|..++.. ....+...+.....+... .+.++.++ ++.++.++... T Consensus 224 i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 296 (480) T protein:vir:78 224 ISPELRKVTDAASRTLMNLQSASQILGTPLRVISG-VTTDELTNDGENTTLDIY------YGRILTLASEAAKISEFKAA 296 (480) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc-CCccccccccccchhhhh------hhhhccCCCCCceEEecCcc Confidence 653 4455555444443333334434556555542 111111111111111111 12333443 44667666643 Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHh------hhcCcccc Q lcl|Aclame:pro 274 PDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNR------LLFAETAD 347 (457) Q Consensus 274 ~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~------~ll~~~~~ 347 (457) .. -.+++..+....+|+..-++|+..+|.......|+..+..+...+...+ .-....+...|.+ .+...... T Consensus 297 ~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka-~~~~~~f~~~l~~~~~l~~~~~g~~~~ 374 (480) T protein:vir:78 297 EL-RNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMA-ERKGRIFGGAWERAMRIAMQIMGREVT 374 (480) T ss_pred CH-HHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCcc Confidence 22 2367888888999999999999999875543334433332222222111 1111222222211 11111111 Q ss_pred -ccceEEEecchhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCC Q lcl|Aclame:pro 348 -RFRFVKFNLDEIKRGAPKERMELWSLGLQNG--IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPP 424 (457) Q Consensus 348 -~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g--~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~ 424 (457) ....+.+.+......+..+.++.+.+++++| +++..-+++.+|+.+-+-...++......-..++.........++. T Consensus 375 ~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 454 (480) T protein:vir:78 375 EEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADA 454 (480) T ss_pred ccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCC Confidence 2233455555666778888888888988876 6667667888887653211111100000000001110000000000 Q ss_pred ccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 425 AIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) .+..+.+...++..++.+......+. T Consensus 455 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480) T protein:vir:78 455 --TPKPTVTETKTETQTSPSGFNRTKTR 480 (480) T ss_pred --CCCCCCCCCCCccccccCCCCcccCC Confidence 00001111111112222222222222 No 185 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.82 E-value=1.4e-08 Score=63.69 Aligned_cols=408 Identities=10% Similarity=0.017 Sum_probs=172.4 Q ss_pred Cchhhhhhccccccccccc-ccccccccchhhhcccccccCccccCHHH-HhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAA-EGRAWEPYDPSIYNLGATASSGERVTPHD-ALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) +-++.+|+++......... ..+++..... ...+ +.. .+-..+. .....+...||+.+++.+.--.|.+ .+ T Consensus 17 ~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~-~~~~-~~~---~p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf~~---~d 88 (474) T protein:vir:81 17 NALINGLLAQIENLRWKNLLRTSYYENKRT-IQYV-GTL---IPPQYFNLGLVLGWTGKAVDALARRCNLEGFVW---PD 88 (474) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCCC-hhhc-ccc---ccHHHHHHHhhcChHHHHHHHHHhhhcccceEC---CC Confidence 4455555443222111100 0011111000 0000 000 0000111 1234555667777777655444432 11 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-Cc-eeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PN-IAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~-~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) +. ..+..+..++...+ ..........+.+++|++|+.+..+. +. ...+.+++|.++.++.+...+...... T Consensus 89 ~~---~~~~~l~~iw~~N~----ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~al 161 (474) T protein:vir:81 89 GD---LDSLGGTEVVDDNH----LLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGLNNLL 161 (474) T ss_pred CC---ccchHHHHHHHhcC----hhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcceeee Confidence 11 11222334443322 23456677888999999999998753 43 355678999988877765443322211 Q ss_pred EEEEEeeecccceeEEeccce-------------------------EEEeccCCccCCccccchh-HHHHHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPRD-------------------------VLHIPGMMLPGDFVGCSPI-SYARESIGLALAAQ 210 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~e-------------------------vih~~~~~~~~~~~G~s~~-~~~~~~i~~~~~~~ 210 (457) ..+.............|.++. |+++.+.......+|.|.+ ..+...++..+... T Consensus 162 ~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~ 241 (474) T protein:vir:81 162 SIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVREL 241 (474) T ss_pred EEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHHHHHHHH Confidence 111111100000011122222 4444443333445787754 23333333333222 Q ss_pred HHHHHHHHccCCcceEEecCC--CCCH---HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHH Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPG--TMSE---EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQF 285 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~--~~~~---e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~ 285 (457) --......-.+.|.-++..-. ...+ +....++..+...+.-..+..+-.....+.++.++.... -..|++.++. T Consensus 242 ~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~-l~~~~~~l~~ 320 (474) T protein:vir:81 242 ARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAAS-PDAHWSDING 320 (474) T ss_pred HHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccccccccccccCCCC-hhHHHHHHHH Confidence 222222223344555454211 1111 111223333322222222111111122345666665332 2248899999 Q ss_pred HHHHHHHHhCCCHHHhccccccc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc------Cc-----cccccceEE Q lcl|Aclame:pro 286 QVPEIARIFGVPPHLISDATNST-SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF------AE-----TADRFRFVK 353 (457) Q Consensus 286 ~~~~Ia~~fgvpp~~lg~~~~~~-~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll------~~-----~~~~~~~~~ 353 (457) ....+|..-++|++.||.....| .|+..+..+...+... +.-....+...|.+.+- .. .......++ T Consensus 321 ~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~k-ae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~ 399 (474) T protein:vir:81 321 LAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAE-AEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSID 399 (474) T ss_pred HHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccce Confidence 99999999999999999754333 3333333332222222 22222333333332110 11 001122344 Q ss_pred EecchhhhccHHHHHHHHHHHHhCCC-c-CHHHHHHHhCCCCCCC-CCCceeeecccccccccccccccccCCCccCCCC Q lcl|Aclame:pro 354 FNLDEIKRGAPKERMELWSLGLQNGI-Y-SIDEVRAAEDMTPLPD-GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPA 430 (457) Q Consensus 354 f~~~~~~~~d~~~~~~~~~~~~~~g~-~-T~nE~R~~~G~~p~~~-~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 430 (457) ..+.+....+..+.++++.|++++|. + +..=+++++|+.+-+= .+.+....-.....++... ... T Consensus 400 v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~------------~~~ 467 (474) T protein:vir:81 400 AKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALI------------DRS 467 (474) T ss_pred eEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHH------------hcC Confidence 44556677888999999999999874 3 2334688889875321 0000000000000111100 000 Q ss_pred CCCCCCC Q lcl|Aclame:pro 431 EEPADDE 437 (457) Q Consensus 431 ~~~~~~~ 437 (457) .+.+..+ T Consensus 468 ~~~~~aq 474 (474) T protein:vir:81 468 NNGATAQ 474 (474) T ss_pred CCCCCCC Confidence 0000001 No 186 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.82 E-value=1.6e-08 Score=63.26 Aligned_cols=372 Identities=12% Similarity=0.040 Sum_probs=165.2 Q ss_pred Cchhhhhhcccccccccc-cccccccccchhhhcccccccCccccCHH--HHhc--cHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPH--DALQ--VSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~--~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) |++ ++|.++........ .....+... .....-+..+..+ ...+ ..+...+|+.+++.+.=-.|.+ T Consensus 4 ~~i-~~L~~~~~~~~~r~~~~~~yy~g~-------~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~-- 73 (422) T protein:vir:97 4 MGM-GYLRRKLALFKTGVDKRYRYYAMD-------DRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTN-- 73 (422) T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcC-------CChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeC-- Confidence 333 23332211111000 000011100 0000001111111 1111 2344455555555332222221 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEeccceeEEEEcCCCcccce Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKIHVHMVMVDGLRRK 154 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v~~~~~~~~~~~~~ 154 (457) .+..+..++.. | +.......+..+.+.+|++|+.+..+. .+...+.+++|..+..+.+...+.... T Consensus 74 ---------~d~~l~~~w~~-N---~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~~~~~ 140 (422) T protein:vir:97 74 ---------DDFNAWEIFKA-N---NPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTFLLTE 140 (422) T ss_pred ---------CchhHHHHHHh-c---ChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCCccee Confidence 12234444443 2 234455677888999999999998763 333467888999998888765443322 Q ss_pred eeEEEEEeeecccceeEEeccc---------------------eEEEeccCCccCCccccchh-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPR---------------------DVLHIPGMMLPGDFVGCSPI-SYARESIGLALAAQKY 212 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~---------------------evih~~~~~~~~~~~G~s~~-~~~~~~i~~~~~~~~~ 212 (457) ....|.............++.. -|+++.+.......+|.|.+ +.+...++......-. T Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~ 220 (422) T protein:vir:97 141 GYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLER 220 (422) T ss_pred eEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHH Confidence 2222211111111001111111 34444443333456888865 3344444444433333 Q ss_pred HHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccC-----cceeeeccCChhHHHHHHHHHHHH Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTE-----GAKFSKVAMSPDEAQFLQTRQFQV 287 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~-----g~~~~~~~~s~~d~~~~e~~~~~~ 287 (457) ......-.+.|.-++..- +.+....+.++... ++++.++. +.++.++..+.-+ .|++.++... T Consensus 221 ~~~~~e~~a~pqr~i~G~-d~d~~~~~~~~~~~----------~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~ 288 (422) T protein:vir:97 221 AEVTAEFYSFPQKYVLGM-DPDAKPMEKWRATV----------STLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYA 288 (422) T ss_pred HHHHHHHhcchhhhhccc-CcccccCchhhhhh----------hhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHH Confidence 222233334455444321 11111112222211 23444432 3466555544322 4899999999 Q ss_pred HHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh------hcCccc--c-ccceEEEecch Q lcl|Aclame:pro 288 PEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL------LFAETA--D-RFRFVKFNLDE 358 (457) Q Consensus 288 ~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~------ll~~~~--~-~~~~~~f~~~~ 358 (457) ..++..-++|++.+|......+|+..+..+...+... +.-..+.+...|.+. +..... . ....+.+.+.. T Consensus 289 ~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~k-a~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p 367 (422) T protein:vir:97 289 SLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAA-GRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEP 367 (422) T ss_pred HHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEcc Confidence 9999999999999998665334443343333222222 222222233333221 111111 0 11122333333 Q ss_pred hhhcc---HHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCC Q lcl|Aclame:pro 359 IKRGA---PKERMELWSLGLQN--GIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPP 424 (457) Q Consensus 359 ~~~~d---~~~~~~~~~~~~~~--g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~ 424 (457) ....+ ..+.++++.|++++ |++..+-+++++|+...+.. ... +... ++.+ T Consensus 368 ~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~~~---~~~-------~~~~------~~d~ 422 (422) T protein:vir:97 368 LFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGADKP---IPA-------ITEV------TTDG 422 (422) T ss_pred CCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchhHH---HHH-------HHhh------hccC Confidence 33344 55667778888888 77788889999999643220 010 0010 0000 No 187 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.79 E-value=4.8e-08 Score=60.73 Aligned_cols=404 Identities=13% Similarity=0.007 Sum_probs=187.8 Q ss_pred hhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCcee Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGTRK 82 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~ 82 (457) |+..+... ..+...... +.+...-............+. +..-+.+......|+..+.-+-+-|+++.....+ T Consensus 1 ~~~~~~~~-~~~r~~~l~-~yy~g~~~~~~~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~--- 72 (440) T protein:vir:95 1 MLAAFLGS-QKQRLAILA-SYAQGDNFSILSGHRRLDDEK---ADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGG--- 72 (440) T ss_pred ChhhHHHH-HHHHHHHHH-HHhccCCcccccccccccccC---CcceeecchHHHHHHhhhhheeccCceEeeCCCc--- Confidence 44433221 111111000 001000000000000000000 0111345666777888887777777766432211 Q ss_pred eecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEEEEe Q lcl|Aclame:pro 83 EIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDID 162 (457) Q Consensus 83 ~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~ 162 (457) .......+.+.............+..+.+.+|.+|..+..+..+...+..++|..+.+..+............|.. T Consensus 73 ---~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~- 148 (440) T protein:vir:95 73 ---SADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPI- 148 (440) T ss_pred ---cHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEE- Confidence 1111222222222223455667788899999999999987754445677889999988876554221111111111 Q ss_pred eecccceeEEeccceEEEeccC--------------C---------ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 163 ADGNEVLLGWFTPRDVLHIPGM--------------M---------LPGDFVGCSPISYARESIGLALAAQKYGAHFFRN 219 (457) Q Consensus 163 ~~~~~~~~~~~~~~evih~~~~--------------~---------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 219 (457) . ........+..+.++++... + ..+...|.|-+..+...++....+........+. T Consensus 149 ~-~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~~~ 227 (440) T protein:vir:95 149 Y-ADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLIDAYDAGQSDTANYMSD 227 (440) T ss_pred e-cCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH Confidence 1 11111223444444443210 0 1123468888888888888888777777776777 Q ss_pred cCCcceEEecC---CCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 220 GAMPGAVVEVP---GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGV 296 (457) Q Consensus 220 ~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgv 296 (457) ++.|-.+++.. ...++++...+++.-.-... ........+++.++..+........+....+.+.+.|+..-++ T Consensus 228 ~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~ 304 (440) T protein:vir:95 228 LNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLK---TGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRI 304 (440) T ss_pred hhcceeeeecccccCCCCccchhhhhhccceecc---cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCC Confidence 77777777643 23345555544432221111 0111122233444444444444455667788889999999999 Q ss_pred CHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHH Q lcl|Aclame:pro 297 PPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 297 pp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~ 366 (457) |..-.+... ++.|+..++.+ ....+...+..+++.|...+...- ........+.+.+......+..+ T Consensus 305 p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~--~~~~~~~~v~i~f~~~~p~~~~~ 381 (440) T protein:vir:95 305 PNLDDDRFN-STSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAIN--GPVIEANKLTFTFHPNIPQDVWT 381 (440) T ss_pred ccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcccccccceEEeCCCCCCCHHH Confidence 975443322 23333322211 122233333333333333332211 11112334566677778889999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCC Q lcl|Aclame:pro 367 RMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) Q Consensus 367 ~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) .++.+.++ .|+++.--+.++++.-..+. + +..+......... ......+..+..+++.| T Consensus 382 ~ad~~~kl--~g~iS~et~~~~l~~~d~~~----E------~~ri~~E~~~~~~-~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 382 EIKAYIEA--GGEISQETLMENASFTDYKT----E------HSRILKQGGSSDL-EIGQIVGDADVGQADTE 440 (440) T ss_pred HHHHHHHH--hccCcHHHHHHhCCCCCcHH----H------HHHHHHHHHHhhh-hHHhhccCCCCCCcCCC Confidence 99999887 57898866777775421110 0 1111111100000 00000000111111111 No 188 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.76 E-value=6e-08 Score=60.18 Aligned_cols=354 Identities=13% Similarity=0.057 Sum_probs=162.4 Q ss_pred Cchhhhhhccccccccc-ccccccccccchhhhcccccccCccccCHH--HH--hccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALD-AAEGRAWEPYDPSIYNLGATASSGERVTPH--DA--LQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) .-++.+|.++....... ......+... .....-+..+-.+ .. +...+..-+|+.++..+.=-.|. T Consensus 3 ~~~i~~L~~~~~~~~~r~~~~~~yY~g~-------~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~--- 72 (409) T protein:vir:16 3 EKGIGYLRFKLSVHKRRAEMRYEQYAMK-------HVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFE--- 72 (409) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcc-------CchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhccccccc--- Confidence 22344443332111100 0000011000 0000000011111 11 12345555666666544322221 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccccee Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKV 155 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~ 155 (457) . .+..+..++.. .+.......+..+.+++|++|+.+..+..+...+.+++|.++.++.+...+.... T Consensus 73 ~--------~d~~l~~i~~~----N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~~~~~~- 139 (409) T protein:vir:16 73 N--------DDFTVNEIFEE----NNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPITGLLTE- 139 (409) T ss_pred C--------cchHHHHHHHh----cChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeeccccccee- Confidence 1 11223444433 2334556777888999999999998775344577889998888777654332111 Q ss_pred eEEEEEeeec--cc-ceeEEeccc----------------------eEEEeccCCccCCccccchh----HHHHHHHHHH Q lcl|Aclame:pro 156 FEAYDIDADG--NE-VLLGWFTPR----------------------DVLHIPGMMLPGDFVGCSPI----SYARESIGLA 206 (457) Q Consensus 156 ~~~y~~~~~~--~~-~~~~~~~~~----------------------evih~~~~~~~~~~~G~s~~----~~~~~~i~~~ 206 (457) .|.+.... +. .....+.++ -|++|.+.......+|.|-+ ..+.+.+... T Consensus 140 --a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~ 217 (409) T protein:vir:16 140 --GYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRT 217 (409) T ss_pred --eeEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHH Confidence 11111100 00 011112222 24444433323456788744 3444444443 Q ss_pred HHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-----CcceeeeccCChhHHHHHH Q lcl|Aclame:pro 207 LAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQ 281 (457) Q Consensus 207 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~g~~~~~~~~s~~d~~~~e 281 (457) ..-......+| +.|.-++..-. .+.+..+.++... ++++.++ ++.++.++....-+ .|++ T Consensus 218 ~~~~~~~~e~~---a~pqr~i~G~d-~d~~~~~~~~~~~----------~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~ 282 (409) T protein:vir:16 218 LERADVTAEFY---SFPQKYVTGLS-DDAEPMETWKATV----------SSMLQFTKDEDGDKPTLGQFTQPSMS-PFTE 282 (409) T ss_pred HHHHHHHHHHh---cChhheeEecC-CCCCccchhhhhh----------hHhhccCCCCCCCCceEEecCCCChh-HHHH Confidence 33333344444 44555554221 1111122222211 2344443 33556566543222 5899 Q ss_pred HHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh----h--cCcccc---ccceE Q lcl|Aclame:pro 282 TRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL----L--FAETAD---RFRFV 352 (457) Q Consensus 282 ~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~----l--l~~~~~---~~~~~ 352 (457) ..+....++|..-++|++.+|......+|+..+..+...+...+ .-..+.+.+.+.+. + ....+. ....+ T Consensus 283 ~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~ 361 (409) T protein:vir:16 283 QLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKT 361 (409) T ss_pred HHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccc Confidence 99999999999999999999976543233333333332222221 22222222222211 1 111110 11222 Q ss_pred EEecchhh---hccHHHHHHHHHHHHhCC-Cc-CHHHHHHHhCCCCCC Q lcl|Aclame:pro 353 KFNLDEIK---RGAPKERMELWSLGLQNG-IY-SIDEVRAAEDMTPLP 395 (457) Q Consensus 353 ~f~~~~~~---~~d~~~~~~~~~~~~~~g-~~-T~nE~R~~~G~~p~~ 395 (457) ++.+.... ..+..+.++++.|++++| .+ .-+-+++++|+..-+ T Consensus 362 ~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 362 KPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred eEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 33333333 334678889999999997 33 345579999997643 No 189 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=98.74 E-value=3.3e-08 Score=61.59 Aligned_cols=404 Identities=10% Similarity=-0.019 Sum_probs=185.2 Q ss_pred Cchhhhhhcccccccc----ccccccccccc-------------ch------hhh----cccccccCccccCHHHHhccH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL----DAAEGRAWEPY-------------DP------SIY----NLGATASSGERVTPHDALQVS 53 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~----~~~~~~~~~~~-------------~~------~~~----~~~~~~~~~~~v~~~~~~~~~ 53 (457) |..++. +|....+- -.... .+... .+ .++ ........ ..-+..-+.++ T Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~--~~~~~~ki~~n 75 (470) T protein:vir:99 1 MKDINY--GRDKVTGNSSFIFPKGE-KLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEK--ETGADNRIVVN 75 (470) T ss_pred CccccC--CcccccCCceEEeCCCC-CcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCccc--ccCCcceeecc Confidence 554431 11100000 00000 00000 00 000 00000000 00011112345 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEE Q lcl|Aclame:pro 54 AVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGL 133 (457) Q Consensus 54 ~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~ 133 (457) ....+++..+..+-+-|+++....++.. ...+..++. ..........++.+.+.+|.+|+.+..+..+...+ T Consensus 76 ~~~~Ivd~~~~~l~g~p~~~~~~~d~~~----~~~l~~~~~----~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i 147 (470) T protein:vir:99 76 SAKYVVDVYNGYFCGIEPKLALLNDSSK----IDEIARWNR----QENFFDTINEISKQCDIFGRSIASIYQGEDARPHL 147 (470) T ss_pred hHHHHHHHHhhhhccCCeeEeeCCchhH----HHHHHHHHH----hcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEE Confidence 6677888888887777877654332111 112233332 23456777888999999999999988775444567 Q ss_pred EEeccceeEEEEcCCCcccceeeE-EEEEeeecc-cceeEEeccceEEEecc----------------------CCccCC Q lcl|Aclame:pro 134 DVLDPTKIHVHMVMVDGLRRKVFE-AYDIDADGN-EVLLGWFTPRDVLHIPG----------------------MMLPGD 189 (457) Q Consensus 134 ~~l~p~~v~~~~~~~~~~~~~~~~-~y~~~~~~~-~~~~~~~~~~evih~~~----------------------~~~~~~ 189 (457) ..++|..+.++.+........... .|....... ......+..+.++++.. ....+. T Consensus 148 ~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~ 227 (470) T protein:vir:99 148 MYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFEN 227 (470) T ss_pred EEEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCC Confidence 889999998877654322111111 111110000 00111222233332211 011123 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceec-----cCc Q lcl|Aclame:pro 190 FVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEG 264 (457) Q Consensus 190 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl-----~~g 264 (457) ..|.|-+..+...++....+..-....+..++.|-.++.......++..+ ....+.. .+++.+ +++ T Consensus 228 ~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~-~~~~~~~--------~~~~~~~~~~~~~~ 298 (470) T protein:vir:99 228 EERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGN-PKFDFKN--------NRVLYVSQLDPDTN 298 (470) T ss_pred CCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccc-hhhhhhh--------cceeeecCCCCCCC Confidence 47888899888888888877777777777777787777653322222111 1111111 122222 234 Q ss_pred ceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHH Q lcl|Aclame:pro 265 AKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIE 334 (457) Q Consensus 265 ~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie 334 (457) .++..+........+....+.+.+.|+..-++|....+.. .++.|+..++.+. ...+..+|.-.++.+. T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 377 (470) T protein:vir:99 299 PQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNF-AGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVL 377 (470) T ss_pred CcceEEeecCChHHHHHHHHHHHHHHHHHhCCcccccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4555565444455566778888999999999997544322 2333433222111 1222333333333333 Q ss_pred HHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccc Q lcl|Aclame:pro 335 AGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEE 414 (457) Q Consensus 335 ~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~ 414 (457) ..+..+--. ......+.+.+...+..+..+.++.+.++. |+++...++++++.-. +..+.+ .+... T Consensus 378 ~~~~~~~~~--~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd-~~~E~e---------ri~~E 443 (470) T protein:vir:99 378 ATLFNNKQD--QELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIE-PDAEMK---------QIAKE 443 (470) T ss_pred HHHhccCCc--ccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCC-HHHHHH---------HHHHH Confidence 333221111 112234566667778889999999998875 7898877888775421 111111 11111 Q ss_pred cccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccC Q lcl|Aclame:pro 415 PEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDD 456 (457) Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (457) .............+. +..+.+ .+++|| T Consensus 444 ~~~~~~~~~~~~~~~----------d~~~~d-----~~~ee~ 470 (470) T protein:vir:99 444 KADAIKQTQQLSMPI----------DILKRD-----NNAEEE 470 (470) T ss_pred HHHHHHHHHhhcCCC----------CcCCCC-----CCccCC Confidence 000000000000000 000000 011111 No 190 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=98.71 E-value=2.8e-08 Score=61.97 Aligned_cols=407 Identities=10% Similarity=-0.002 Sum_probs=167.1 Q ss_pred Cchhhhhhcccc--cccccccccccccccchhhhcccccccCccccCHH-----HHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFWSALFGRGH--SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPH-----DALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) .-+...|+.... .+...... ..+...-. ....+..+..+ ....+.+...+++..+..+--..+.+ T Consensus 29 ~~l~~~l~~~~~~~~~rl~~l~-~YY~G~~~-------~~~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~ 100 (501) T protein:vir:25 29 GALVADMWRLHISERQWLDRIY-EYTKGLRG-------RPEVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRN 100 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcCCC-------chhccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceec Confidence 111222221110 01100000 00000000 00000011111 11123455666666665543233322 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcC-CCccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVM-VDGLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~-~~~~~ 152 (457) .++. ....+..++.. | ........+..+++.+|.+|+.+.++... ..+..++|..+.++.+. ..... T Consensus 101 ---~d~~----~~~~l~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~de~~-~~i~~~sp~~~~~iy~D~~~~~~ 168 (501) T protein:vir:25 101 ---ALAK----ENDPAWEMWQR-N---RMDARQAEVHRPALTYGASYVTVTPTDEG-PVFRTRSPRQILAVYADPSVDAW 168 (501) T ss_pred ---CCcc----chHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCCC-CeEEEeccccEEEEEecCCCCcc Confidence 1111 11223333332 2 23455667888999999999998776533 24667888888765432 21111 Q ss_pred cee-eEEEEEeee-cccceeEEe----------------------------------------------ccceEEEeccC Q lcl|Aclame:pro 153 RKV-FEAYDIDAD-GNEVLLGWF----------------------------------------------TPRDVLHIPGM 184 (457) Q Consensus 153 ~~~-~~~y~~~~~-~~~~~~~~~----------------------------------------------~~~evih~~~~ 184 (457) ... ...|..... ........+ ..--|+|+... T Consensus 169 ~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~ 248 (501) T protein:vir:25 169 PQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNG 248 (501) T ss_pred eeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCc Confidence 110 000100000 000000001 11124444332 Q ss_pred CccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-C Q lcl|Aclame:pro 185 MLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-E 263 (457) Q Consensus 185 ~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-~ 263 (457) ... ..+|.|-++.+...++..+...-.......-.+.|..++..- +.++.+. |+ ...++++.++ + T Consensus 249 ~~~-~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~---~~~~~~~----~~------~~~~~i~~~~~~ 314 (501) T protein:vir:25 249 RDA-DDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGW---TGSKAEV----LK------ASALRVWTFEDP 314 (501) T ss_pred ccc-CccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCC---CCCccch----hh------hcccceeccCCC Confidence 211 336888777666666666555444444444444454444321 1121121 11 1124566665 4 Q ss_pred cceeeeccCChhHH-HHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh-- Q lcl|Aclame:pro 264 GAKFSKVAMSPDEA-QFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL-- 340 (457) Q Consensus 264 g~~~~~~~~s~~d~-~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~-- 340 (457) +.++.++... ++ .|++.++.....|++.-++|+..+|...+ +.|+..+......+... ..-....+...|.+. T Consensus 315 ~~~~~q~~~~--~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~-N~Sg~Al~~~~~~l~~k-a~~k~~~f~~~l~~~~r 390 (501) T protein:vir:25 315 EVKAQAFPPA--SVEPYNLILEEMLQHVAMVAQISPAQVTGKMI-NVSAEALAAAEANQQRK-LAAKRESFGESWEQLLR 390 (501) T ss_pred CceEEEeccc--ChHHHHHHHHHHHHHHHhhcCCChhhhccccC-ChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH Confidence 5666655432 33 38888999999999999999999985433 33343333222222221 122222223333221 Q ss_pred ----hcCcccc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHH-HHhCCCCCCCCCCceeeecccccccccc Q lcl|Aclame:pro 341 ----LFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVR-AAEDMTPLPDGLGEKYRVPLNLGEIGEE 414 (457) Q Consensus 341 ----ll~~~~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R-~~~G~~p~~~~~gd~~~~~~n~~~~~~~ 414 (457) +....+. ....+.+.+......+..+.++++.++++.|+ +.-.+. .+.|+.+-. -+....-. .-... T Consensus 391 l~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~---ie~~~~~~---~e~~~ 463 (501) T protein:vir:25 391 LAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQT---IQAIKDSL---RGGEV 463 (501) T ss_pred HHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHH---HHHHHHHH---HHHhH Confidence 1111111 22345666677788899999999999998886 444443 345776421 11000000 00000 Q ss_pred cccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 415 PEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) .............+.. ...........++++...++-| T Consensus 464 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~ 501 (501) T protein:vir:25 464 KSLVDKLLSNEPAPVP-----PPPPQAAAQALNEGGVNGNGGA 501 (501) T ss_pred HHHHHHhhccCcCCCC-----CCCCCCCccccccccCCCCCCC Confidence 0000000000000000 0111111111222233222233 No 191 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.70 E-value=2.9e-08 Score=61.94 Aligned_cols=391 Identities=13% Similarity=0.018 Sum_probs=169.3 Q ss_pred Cchhhhhhcccccccc-cccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL-DAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 79 (457) .-++.+|......... -....+.+..... ..... ... ..-....-..+.....+++..+..+--..+ ...+ T Consensus 6 ~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~-i~~~~-~~~--~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~---~~~d- 77 (441) T protein:vir:80 6 LALIEGMYDRIQRLSSWHCCIEGYYEGSNR-VRDLG-VAI--PPELQRVQTVVSWPGIAVDALEERLDWLGW---TNGD- 77 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhcC-ccc--chhhhhhhhhcchHHHHHHHHHhhhccccc---cCCC- Confidence 2223333222111000 0000011110000 00000 000 000011112234455566655554421122 1111 Q ss_pred ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEEE Q lcl|Aclame:pro 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) Q Consensus 80 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~y 159 (457) ...+..++.. .+..+....+..+++.+|.+|..+..+..+...+..++|..+.++.+...+........| T Consensus 78 ------~~~l~~i~~~----n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~ 147 (441) T protein:vir:80 78 ------GYGLDGVYAA----NRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVVQ 147 (441) T ss_pred ------hHHHHHHHHh----cCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCceeEEEEEE Confidence 1223333332 245677888899999999999998887544446789999999887765443222111111 Q ss_pred EEeeecccceeEEecc--------------------------ceEEEeccCCccCCccccchhHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 160 DIDADGNEVLLGWFTP--------------------------RDVLHIPGMMLPGDFVGCSPISY-ARESIGLALAAQKY 212 (457) Q Consensus 160 ~~~~~~~~~~~~~~~~--------------------------~evih~~~~~~~~~~~G~s~~~~-~~~~i~~~~~~~~~ 212 (457) .... ........+.+ --|+|+.........+|.|-+.- +...++.......- T Consensus 148 ~~~~-~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~ 226 (441) T protein:vir:80 148 QTCD-PEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLG 226 (441) T ss_pred EEec-CceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHH Confidence 1110 00001111222 23455544433345578776542 44455554444444 Q ss_pred HHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCc-----ceeeeccCChhHHHHHHHHHHHH Q lcl|Aclame:pro 213 GAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEG-----AKFSKVAMSPDEAQFLQTRQFQV 287 (457) Q Consensus 213 ~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g-----~~~~~~~~s~~d~~~~e~~~~~~ 287 (457) ......-.+.|-.+++. ...++......+. ..++++.++.+ .++..+.... --.+++..+... T Consensus 227 ~~~~~~~~~~~~~~i~G-~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i 294 (441) T protein:vir:80 227 QSVNRDFYAYPQRWVTG-VSADEFSQPGWVL----------SMASVWAVDKDDDGDTPNVGSFPVNS-PTPYSDQMRLLA 294 (441) T ss_pred HHHHHHhhcCceeeeec-CCccccccchhhh----------cccccccCCCCCCCCcceeEecCccc-hHHHHHHHHHHH Confidence 44444445566655542 2222221111111 12334444322 3444444322 223678888889 Q ss_pred HHHHHHhCCCHHHhccccccccccchHHHHHHHH----------HHHHHhhHHHHHHHHHHhhhcCccccccceEEEecc Q lcl|Aclame:pro 288 PEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF----------TMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLD 357 (457) Q Consensus 288 ~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~----------~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~ 357 (457) ..|+..-++|++.+|.......|+..+......+ +..+|.-.++.+...++... ........+.+.+. T Consensus 295 ~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~--~~~~~~~~i~~~f~ 372 (441) T protein:vir:80 295 QLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRV--DEADFFGDVGLRWR 372 (441) T ss_pred HHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cccccceeeeEEeC Confidence 9999999999999987654333443332222111 11222222222211111100 00011234566677 Q ss_pred hhhhccHHHHHHHHHHHHhCCCcCH--HHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCC Q lcl|Aclame:pro 358 EIKRGAPKERMELWSLGLQNGIYSI--DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) Q Consensus 358 ~~~~~d~~~~~~~~~~~~~~g~~T~--nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) ..+..+..+.++++.+++++|++.. .-+++.+|+.+-+ ..+ +......+ ........+ .. T Consensus 373 ~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e---~~~---------~~~e~~e~-~~~~~~~~~-----~~ 434 (441) T protein:vir:80 373 DASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQ---VEA---------VMRHRAES-SDPLAVLAG-----AI 434 (441) T ss_pred CCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHH---HHH---------HHHHHHHH-HHHHHHHhh-----hh Confidence 7888999999999999999998643 3467777775422 111 11100000 000000000 00 Q ss_pred CCCcccCCCCcccc Q lcl|Aclame:pro 436 DEEPDNAEGDPDEG 449 (457) Q Consensus 436 ~~~~~~~~~~~~~~ 449 (457) . .++++= T Consensus 435 ~-------~~~~~~ 441 (441) T protein:vir:80 435 S-------RQTNEV 441 (441) T ss_pred h-------cccccC Confidence 0 000000 No 192 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.65 E-value=1.5e-07 Score=58.00 Aligned_cols=400 Identities=10% Similarity=-0.013 Sum_probs=178.6 Q ss_pred Cchhhhhhccccc--ccccccccccccccchhhhcccccccCcccc---CHHHHhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERV---TPHDALQVSAVFASVRLLSETIATLPLSTYS 75 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~ 75 (457) =.++.++.....+ +...... +.+...-.... -.......... -+..-+.++....+++..+.-+-+-|+++.. T Consensus 29 ~~~i~~~i~~~~~~~~~~~~~~-~Yy~g~~~i~~-r~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~ 106 (474) T protein:vir:95 29 EEMIIRLIDDHRKQLDKITVGQ-RYYDKDNDIVK-QMKKVDVYGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYSC 106 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcccCchhc-cccccccccccccccccceeccchHHHHHHHHHhhhccCCceecc Confidence 0111111110000 0000000 00000000000 00000000000 0011223566677888888888888877643 Q ss_pred eccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-cccce Q lcl|Aclame:pro 76 KRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLRRK 154 (457) Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~~~ 154 (457) ..+. ....+..++. | ........++.+.+.+|.+|+.+..+..+...+..++|..+.++.+... +.... T Consensus 107 ~d~~-----~~~~l~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~ 176 (474) T protein:vir:95 107 EDES-----VLKIIHDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKS 176 (474) T ss_pred CchH-----HHHHHHHHHh--c---cHHHHHHHHHHHHhhcCcEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEE Confidence 2211 1112222322 2 2455667778899999999999887654445678889988887765432 11111 Q ss_pred eeEEEEEeeecccceeEEeccceEEEeccCC------------------------------ccCCccccchhHHHHHHHH Q lcl|Aclame:pro 155 VFEAYDIDADGNEVLLGWFTPRDVLHIPGMM------------------------------LPGDFVGCSPISYARESIG 204 (457) Q Consensus 155 ~~~~y~~~~~~~~~~~~~~~~~evih~~~~~------------------------------~~~~~~G~s~~~~~~~~i~ 204 (457) ....|.. .+......+..+.+.++.... ..+...|.|-+..+...++ T Consensus 177 ~i~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liD 253 (474) T protein:vir:95 177 FIRYYKF---NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLID 253 (474) T ss_pred EEEEEEE---cCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCCCCCcHHHHHHHHH Confidence 1111211 111122334444444332100 0123468888888888888 Q ss_pred HHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 205 LALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) ..+.+..-....+.....|-.++..-...+.+ .+.... ...+++.++++.++..+........+....+ T Consensus 254 a~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~---~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (474) T protein:vir:95 254 AIDKRLSDAQNMFDESVELIYILKGYEGQDLE---EFMRGL--------KYYKAINVDGDGGVETIQVEVPVSSTKEYID 322 (474) T ss_pred HHHHHHHHHHHHHHHhcCceeeeecCCcccch---hhhhhh--------hccceeeccCCCceeEEeecCCHHHHHHHHH Confidence 88777666666677777776666533221111 111111 1245566676666666665555566777888 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEE Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKF 354 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f 354 (457) .+.+.|+..-++|..-.+. ..++.|+..++.+. ...+..+|..+++.|...+.. . .....+.+ T Consensus 323 ~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~----~--~d~~~i~v 395 (474) T protein:vir:95 323 LMRAYIMEFGQGVDFQTDK-FGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNL----K--MDVKDIEI 395 (474) T ss_pred HHHHHHHHHhCCccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--cccceeeE Confidence 8899999999999633221 12333332222111 122233333333333332211 1 12233445 Q ss_pred ecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCC Q lcl|Aclame:pro 355 NLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPA 434 (457) Q Consensus 355 ~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (457) .++.-...|..+.++. +.+.|+++...+.+++++-.-+..+. ..+....... ......... ... T Consensus 396 ~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~d~~~E~---------~ri~~E~~~~-~~~~~~~~~---~~~ 459 (474) T protein:vir:95 396 SFNFNRMMNDAEQSQI---IAQSQYLSRETLVKSSPLVDDYKAEL---------ERIEQEQMEY-NKQLPNLDD---GGA 459 (474) T ss_pred EeccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHH---------HHHHHHHHHH-Hhccccccc---ccC Confidence 5555556666666654 45679999888888775432111111 1111111000 000000000 001 Q ss_pred CCCCcccCCCCcccccccccc Q lcl|Aclame:pro 435 DDEEPDNAEGDPDEGETEDDD 455 (457) Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~ 455 (457) ++.++ .++...+++| T Consensus 460 d~~~~------~~~~~~~~~~ 474 (474) T protein:vir:95 460 DGAQQ------QERSNDKESE 474 (474) T ss_pred CCCcC------CCCCccCCCC Confidence 11100 0111111111 No 193 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=98.64 E-value=1.5e-07 Score=57.95 Aligned_cols=402 Identities=11% Similarity=0.004 Sum_probs=183.1 Q ss_pred Cchhhhh---hccccc--ccccccccccccccchhhhcccc--cccCccccCHHHHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFWSAL---FGRGHS--PALDAAEGRAWEPYDPSIYNLGA--TASSGERVTPHDALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~~~l---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) +-+.+.| ..+... +...... ..+...-........ ........-+..-+.++....+++..+..+-+-|+++ T Consensus 34 e~~~~~i~~~i~~~~~~~~r~~~l~-~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~ 112 (483) T protein:vir:12 34 ETLEEMIVRYIKQHLEKLPEISIGQ-EYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 112 (483) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccccccccccccccccccccccccccccchHHHHHHHHhhhhcccCcee Confidence 2221111 111000 0000000 000000000000000 0000000001111345777788888888888888776 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-ccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~ 152 (457) ...++. ....+..++. | ...+....+..+.+.+|.+|..+..+..+...+..++|..+.+..+... +.. T Consensus 113 ~~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~i~~~~p~~~~~v~d~~~~~~~ 182 (483) T protein:vir:12 113 KHTDDE-----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEEL 182 (483) T ss_pred ccCChH-----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCce Confidence 332211 1112222222 2 2345566678889999999999988765555688899999988765432 111 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccC---------------------C---------ccCCccccchhHHHHHH Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM---------------------M---------LPGDFVGCSPISYARES 202 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~---------------------~---------~~~~~~G~s~~~~~~~~ 202 (457) ......|.. ........+.+..|.|+... + ..+...|.|-+..+... T Consensus 183 ~~~ir~~~~---~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 259 (483) T protein:vir:12 183 EAFIRMYKL---ENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTL 259 (483) T ss_pred EEEEEEEEe---ecceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHH Confidence 111111111 11111122333333332110 0 01224688889888888 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 203 IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 203 i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) ++....+..-....+...+.|-.++..... +........+. ..+++.++++.++..+........+... T Consensus 260 iDa~d~~~S~~~~~~~~~~~~~lv~~g~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (483) T protein:vir:12 260 IDAYNRRLSDLSNTFKDSNELTYVLTNYDD---QELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKY 328 (483) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCCc---ccchhHHHhhh--------hccccccCCCCcceEEeecCCHHHHHHH Confidence 888887777767667777777776653322 21122222221 1234445555555555544455566777 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+.. +++.|+..++-+ ....+..++...++.|...++ .. .....+ T Consensus 329 ~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~-----~~-~~~~~i 401 (483) T protein:vir:12 329 LDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IK-GEHKDV 401 (483) T ss_pred HHHHHHHHHHHhCCCCCCcccc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC-Ccccee Confidence 8888889999999987544321 223333222211 122223333333333332222 11 123345 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+...+..|..+.++.+.++ .|+++..-+++++++-.-+..+.+ .+...........+. .... T Consensus 402 ~v~f~~~~p~~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~~~E~~---------ri~~E~~~~~~~~~~----~~~~ 466 (483) T protein:vir:12 402 DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELE---------RIEQEQMEYNKQLPN----LDDG 466 (483) T ss_pred eEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHH---------HHHHHHHHHHhhccc----cccc Confidence 5666777888999999998887 489998888888865321111111 111111100000010 0001 Q ss_pred CCCCCCcccCCCCccccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ 452 (457) ..++...+ .++++.+.+ T Consensus 467 ~~d~~~~~---~~~~~~e~e 483 (483) T protein:vir:12 467 GADGAQQQ---ERSNNKESE 483 (483) T ss_pred ccCCcccC---CCCCcccCC Confidence 11111000 011111111 No 194 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=98.62 E-value=1.9e-07 Score=57.45 Aligned_cols=402 Identities=11% Similarity=0.014 Sum_probs=181.8 Q ss_pred Cchh---hhhhccccc--ccccccccccccccchhhhccccccc--CccccCHHHHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFW---SALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATAS--SGERVTPHDALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~---~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) |-.. .++..+... +...... ..+...-........... .....-+..-+.++....+++..+..+-+-|+++ T Consensus 43 ~~~~~~i~~~i~~~~~~~~r~~~l~-~YY~g~~~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~ 121 (492) T protein:vir:94 43 ETLEEMIVRYIKQHLEKLPEISIGQ-EYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccccccccccccccccccccccccccccchHHHHHHHHHhhhcccCcee Confidence 2211 111111100 0000000 000000000000000000 0000001112346777788888888888888776 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-ccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~ 152 (457) ....+. ....+..++. | ........+..+.+.+|.+|..+..+..+-..+..++|..+.+..+... +.. T Consensus 122 ~~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~ 191 (492) T protein:vir:94 122 KHTDDE-----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEEL 191 (492) T ss_pred ccCchH-----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCce Confidence 432211 1112222222 2 3455667788999999999999987754445678899999887765332 211 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccC---------------------C---------ccCCccccchhHHHHHH Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM---------------------M---------LPGDFVGCSPISYARES 202 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~---------------------~---------~~~~~~G~s~~~~~~~~ 202 (457) ......|... .......+....|.++... + ..+...|.|-+..+... T Consensus 192 ~a~ir~~~~~---~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~l 268 (492) T protein:vir:94 192 EAFIRMYKLE---NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTL 268 (492) T ss_pred EEEEEEEeec---cceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHH Confidence 1111111110 1111122222333332110 0 01223688999988888 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 203 IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 203 i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) ++....+..-....+.....|-.++..-. .+...++...+. ..+++.++++.++..+........+... T Consensus 269 iDa~d~~~S~~~~~~~~~~~p~lv~~g~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (492) T protein:vir:94 269 IDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCC---cccchhhHHHHh--------hccceecCCCCcceeEeccCCHHHHHHH Confidence 88888777777777777777877665322 222222222221 2344555555555555444444555667 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|+..-++|..-.+.. +++.|+..++-+. ...+...|...++.|...++ .. .....+ T Consensus 338 ~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~-----~~-~~~~~i 410 (492) T protein:vir:94 338 LDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IK-GEHKDV 410 (492) T ss_pred HHHHHHHHHHHhCCcCCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC-ccccee Confidence 7888888888888886433221 2233332222111 11122222332222222221 11 122345 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.+...+..+..+.++.+.++. |+++..-+++++++-+-+..+.++ +...........+. .. T Consensus 411 ~v~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~er---------i~~E~~~~~~~~~~----~~-- 473 (492) T protein:vir:94 411 DISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELER---------IEQEQMEYNKQLPN----LD-- 473 (492) T ss_pred eEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHH---------HHHHHHHHHhhccc----cc-- Confidence 66667778889999999988875 889887788888653322111111 11110000000000 00 Q ss_pred CCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~ 454 (457) +..++++..+.+.++.+.+ T Consensus 474 ---~~~~~~~~~~~~~~~~e~e 492 (492) T protein:vir:94 474 ---DGGADSAQQQERSNNKESE 492 (492) T ss_pred ---cccCCCCccccCCccccCC Confidence 0001111111111111111 No 195 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.61 E-value=9.4e-08 Score=59.12 Aligned_cols=408 Identities=10% Similarity=0.023 Sum_probs=170.7 Q ss_pred Cchh-hhhhccccc--ccccccccccccccchhhhcccccccCccccCHHHH----hccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFW-SALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDA----LQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~-~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) ..++ .+|++.... +..... ..++..... .......... ..... ..+.+...+|+.+++.+--.++.+ T Consensus 15 ~~~~~~~l~~~~~~~~~r~~~~-~~YY~g~~~----i~~~~~~~~~-~~~~~~~~~~~~n~~~~iVd~~~~~l~~~gf~~ 88 (479) T protein:vir:99 15 AKYLETKVFPKMNTECERLDDF-EAWTKNGQE----VPDLATRHKN-KEREVLQQLSRKPWMGLMVNSFAQQLIVDGYRK 88 (479) T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHhcCCc----ccccccccCC-hhHHHHHHHhhcCcHHHHHHHHHhhcccccccC Confidence 1111 111111000 000000 000000000 0000000000 01111 133456667777766553333322 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe-----cCCceeEEEEeccceeEEEEcCC Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-----AGPNIAGLDVLDPTKIHVHMVMV 148 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~-----~~g~~~~~~~l~p~~v~~~~~~~ 148 (457) .++. ....+..++.. | ...+....++.+++.+|.+|+.+.. +......+..++|..+.++.+.. T Consensus 89 ---~d~~----~~~~~~~i~~~-N---~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iydd~ 157 (479) T protein:vir:99 89 ---TGTN----ENAKGWDTWRL-N---QMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIWEDP 157 (479) T ss_pred ---CCch----hhHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEecCC Confidence 1111 12233444443 2 2335667788899999999998864 22233456677888887765443 Q ss_pred CcccceeeEEEEEeee-----------------cccceeE-------EeccceEEEeccCCccCCccccchhHHHHHHHH Q lcl|Aclame:pro 149 DGLRRKVFEAYDIDAD-----------------GNEVLLG-------WFTPRDVLHIPGMMLPGDFVGCSPISYARESIG 204 (457) Q Consensus 149 ~~~~~~~~~~y~~~~~-----------------~~~~~~~-------~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~ 204 (457) ...... .|.+... ...+... .+..--|+++.+.... ..+|.|-+..+...++ T Consensus 158 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liD 233 (479) T protein:vir:99 158 YWDEWP---KYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAK 233 (479) T ss_pred ccccee---eEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHH Confidence 221100 0111000 0011110 0111234555543322 3479999988888888 Q ss_pred HHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCccee-ccCcceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 205 LALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVAL-LTEGAKFSKVAMSPDEAQFLQTR 283 (457) Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~v-l~~g~~~~~~~~s~~d~~~~e~~ 283 (457) .......-....+.-.+.|..++.............. .+. ...++++. -+++.++.++.... -..+++.+ T Consensus 234 a~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~--~~~------~~~~~i~~~~~~~~~~~q~~~~~-~~~~~~~l 304 (479) T protein:vir:99 234 AIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQE--KMR------FAQESMLISQNEKASFGAIPAAP-LDGLLNAY 304 (479) T ss_pred HHHHHHHHHHHHHHHhhchhhhhcCCCcccccccchh--ccc------cccccceeecCCCceEEEecccc-hHHHHHHH Confidence 7777666655556666667666553221111111111 111 01123333 35566776665322 23467778 Q ss_pred HHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH----------HHHHHHhhHHHHHHHHHHhhhcCcccc-ccceE Q lcl|Aclame:pro 284 QFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA----------FTMFSLRPWLERIEAGFNRLLFAETAD-RFRFV 352 (457) Q Consensus 284 ~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~----------~~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~~ 352 (457) +....+|+..-++|++.+|... +.|+..+...... .+..+|.-+++.+-. +...... ....+ T Consensus 305 ~~~i~~i~~~t~~p~~~~g~~~--n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~-----~~~~~~~~~~~~i 377 (479) T protein:vir:99 305 KESLLEFLALAQLPPHIAGQIV--NVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNK-----IEGRTEEATDLDF 377 (479) T ss_pred HHHHHHHhccCCCCHHHccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCccccceee Confidence 8888999999999999998642 2333222221111 111222222222211 1111111 11234 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeeccccc-ccccccccccccCCCccCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLG-EIGEEPEPEPAPAPPAIDPPA 430 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~-G~~p~~~~~gd~~~~~~n~~-~~~~~~~~~~~~~~~~~~~~~ 430 (457) .+.+......+..+.++.+.+++++|+++...+.+++ |+.+-. -+....-..-. ...... .. ...+.++.. T Consensus 378 ~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~---~e~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 450 (479) T protein:vir:99 378 TITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQST---VNGWKEIYDREGDFGKYM---RK-LQNGPDPAE 450 (479) T ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHH---HHHHHHHHHHHHHHHHHH---HH-HhcccCccc Confidence 4555556677888999999999999999887777776 765321 11000000000 000000 00 000000000 Q ss_pred CCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 431 EEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +.++.+ ...+.++.....++.| T Consensus 451 ~~~~~~-----~~~~~~~~~~~~~~~~ 472 (479) T protein:vir:99 451 QRGGPN-----GATNMQQANNKTGEPA 472 (479) T ss_pred ccCCCC-----CCCCCCCCCCCCcchh Confidence 000000 0000001111112222 No 196 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=98.61 E-value=2e-07 Score=57.32 Aligned_cols=402 Identities=11% Similarity=0.004 Sum_probs=181.9 Q ss_pred Cchhhhhhccc----cc--ccccccccccccccchhhhcc-c-ccccCccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFWSALFGRG----HS--PALDAAEGRAWEPYDPSIYNL-G-ATASSGERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~~~l~~~~----~~--~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) +-+...+..+. .. +..... ...+...-...... . .........-+..-+.++....+++..+..+-+-|++ T Consensus 22 ~~~~~~~i~~~i~~~~~~~~~~~~~-~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 100 (472) T protein:vir:93 22 PETLEEMIVRYIKQHLEKLPEISIG-QEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 100 (472) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccccccchhhccccccccccccccccchHHHHHHHHhhhhcccCee Confidence 22222221110 00 000000 00000000000000 0 0000000000011123577778888888888788877 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-cc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GL 151 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~ 151 (457) +....+. ....+..++. | ...+....+..+.+.+|.+|+.+..+..+...+..++|..+.++.+... +. T Consensus 101 ~~~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~~i~d~~~~~~ 170 (472) T protein:vir:93 101 FKHTDDE-----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEE 170 (472) T ss_pred eccCChH-----HHHHHHHHHh--c---cHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceEEEEcCCCCCc Confidence 6432211 1112222221 1 2445566678889999999999987754445678899999988876432 21 Q ss_pred cceeeEEEEEeeecccceeEEeccceEEEeccC------------------------------CccCCccccchhHHHHH Q lcl|Aclame:pro 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM------------------------------MLPGDFVGCSPISYARE 201 (457) Q Consensus 152 ~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~------------------------------~~~~~~~G~s~~~~~~~ 201 (457) .......|... .......+.+..+.++... ...+...|.|-+..+.. T Consensus 171 ~~~~ir~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s~~e~v~~ 247 (472) T protein:vir:93 171 LEAFIRMYKLE---NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKT 247 (472) T ss_pred eEEEEEEEEee---cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchhhhHH Confidence 11111111110 1111112222222222100 00123468899998888 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHH Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQ 281 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e 281 (457) .++....+.......+.....|-.++..-.. +........+. ..+++.++++.++..+........+.. T Consensus 248 liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (472) T protein:vir:93 248 LIDAYNRRLSDLSNTFKDSNELTYVLTNYDD---QELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKK 316 (472) T ss_pred HHHHHHHHHHHHHHHHHHhcCceeEeecCCc---ccchhhHHHHh--------hccccccCCCCcceeEeecCCHHHHHH Confidence 8888887777777777777788776653322 11122222211 233455555556555554555666778 Q ss_pred HHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHHHHhhhcCccccccce Q lcl|Aclame:pro 282 TRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAGFNRLLFAETADRFRF 351 (457) Q Consensus 282 ~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~ 351 (457) ..+.+.+.|+..-++|..-.+.. +++.|+..++-+.. ..+...|.-+++.|...++ .. ..... T Consensus 317 ~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~-----~~-~~~~~ 389 (472) T protein:vir:93 317 YLDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IK-GEHKD 389 (472) T ss_pred HHHHHHHHHHHHhCCCCCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC-cccce Confidence 88888999999999987544322 22333332221111 1222222222222222221 11 12234 Q ss_pred EEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCC Q lcl|Aclame:pro 352 VKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAE 431 (457) Q Consensus 352 ~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 431 (457) +.+.+...+..+..+.++.+.++ .|+++..-+.+++++-.-+..+.+ .+...........+. ... T Consensus 390 i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~---------ri~~E~~~~~~~~~~----~~~ 454 (472) T protein:vir:93 390 VDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELE---------RIEQEQMEYNKQLPN----LDD 454 (472) T ss_pred eeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHH---------HHHHHHHHHHHhccC----cCc Confidence 55666777788899999998887 488988778787765321111111 111110000000000 000 Q ss_pred CCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 432 EPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) ...+ +.+.+.++++.+.+ T Consensus 455 ~~~d-----~~~~~~~~~~~~~e 472 (472) T protein:vir:93 455 GGAD-----GAQQQERSNNKESE 472 (472) T ss_pred ccCC-----CCCCCCCCCcccCC Confidence 0111 11111111111111 No 197 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=98.61 E-value=2e-07 Score=57.28 Aligned_cols=419 Identities=11% Similarity=0.018 Sum_probs=176.7 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) -.|+++...+. .++.... .+.+...-... ...........-+..-+..+.....++..+.-+-+-|+++....+.. T Consensus 28 ~~li~~~~~~~-~~r~~~l-~~YY~g~~~~i--~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~~~d~~~ 103 (506) T protein:vir:94 28 MKFITHHFNYQ-RPRLEML-DDYYQGYNLKI--LDKQSRRHEDGKADHRATHSFAKYIADFQTSYSVGNPINVKLPDDGS 103 (506) T ss_pred HHHHHHHHHHH-HHHHHHH-HHHhcCCCccc--cccccccccccCCcceeecchHHHHHHHhhhhhcccCceeecCcchH Confidence 22222111100 0000000 00010000000 00000000000011123456777888888888877887764322211 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCccc-ceeeEEE Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLR-RKVFEAY 159 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~-~~~~~~y 159 (457) ...+..++. ..........+..+++.+|.+|..+..+......+..++|..+.+..+...... ......| T Consensus 104 -----~~~l~~~~~----~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~v~~~ 174 (506) T protein:vir:94 104 -----NSGFDTFNK----ANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMAVRYH 174 (506) T ss_pred -----HHHHHHHHh----ccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEecCCCCCceEEEEEEE Confidence 112222322 234455677788889999999999988765556677899999988776433211 1111111 Q ss_pred EEeeecccc------eeEEeccceEEEeccC-----------C---------ccCCccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 DIDADGNEV------LLGWFTPRDVLHIPGM-----------M---------LPGDFVGCSPISYARESIGLALAAQKYG 213 (457) Q Consensus 160 ~~~~~~~~~------~~~~~~~~evih~~~~-----------~---------~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 213 (457) ......+.. ....+.+..+.++... + ..+...|.|.+......++....+..-. T Consensus 175 ~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~S~~ 254 (506) T protein:vir:94 175 QIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQSDT 254 (506) T ss_pred eeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHH Confidence 110000000 0011122222111000 0 0112346777777777776666554444 Q ss_pred HHHHHccCCcceEEecCCCC---------------------CHHHHHHHHHHHHHH-hccccccCcceeccCcceeeecc Q lcl|Aclame:pro 214 AHFFRNGAMPGAVVEVPGTM---------------------SEEGLARAREAWRAA-NSGVDNAHRVALLTEGAKFSKVA 271 (457) Q Consensus 214 ~~~~~n~~~~~~~~~~~~~~---------------------~~e~~~~~~~~~~~~-~~~~~n~~~~~vl~~g~~~~~~~ 271 (457) .........|-.+++..... ..+....+...+... .......+.+.....+.++.-+. T Consensus 255 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 334 (506) T protein:vir:94 255 ANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYIN 334 (506) T ss_pred HHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeee Confidence 44333333333333211000 011111122222111 11111112222233344555565 Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH----------HHHHHHHHHHhhHHHHHHHHHHhhh Q lcl|Aclame:pro 272 MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE----------QNIAFTMFSLRPWLERIEAGFNRLL 341 (457) Q Consensus 272 ~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~l~~~l 341 (457) .......+....+.+...|...-++|..-.+. ..++.|+..+.. .....+...|...++.|...+.. T Consensus 335 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~-- 411 (506) T protein:vir:94 335 KTYDVVGSEAYKKRVAGDIHKFSHTPDLTDEN-FASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENS-- 411 (506) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCcccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-- Confidence 55556667778888999999999999743321 123334432221 12223334444444444443331 Q ss_pred cCc-cccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccc Q lcl|Aclame:pro 342 FAE-TADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPA 420 (457) Q Consensus 342 l~~-~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~ 420 (457) ... .......+.+.+...+..|..+.++.+.++ .|+++...+++++++-.-+. . .+....+.+.. T Consensus 412 ~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~--~----------E~~ri~~E~~~ 477 (506) T protein:vir:94 412 IHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQ--D----------IVDMMKEQSAN 477 (506) T ss_pred cCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH--H----------HHHHHHHHHHH Confidence 111 111223456667778888999999998887 48999988988875432111 1 11111111100 Q ss_pred cCCCccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 421 PAPPAIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) .....+.. ....+.++.+..++. ++.|-| T Consensus 478 -~~~~~~~~-~~~~~~~~~~~~~~~-~~~e~~ 506 (506) T protein:vir:94 478 -GDYSFDQN-GVISNDGQTNTTATQ-TDEEVR 506 (506) T ss_pred -Hhhcchhh-cCCCcccCccccccc-cccCCC Confidence 00000000 011111111111111 111112 No 198 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.60 E-value=2.2e-07 Score=57.14 Aligned_cols=402 Identities=11% Similarity=0.006 Sum_probs=183.0 Q ss_pred Cchh----hhhhccccc--ccccccccccccccchhhhcccccccC--ccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFW----SALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASS--GERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~----~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) +-+. .++..+... +...... ..+...-............ ....-+..-+.+.....+++..+..+-+-|++ T Consensus 42 ~~~~~~~i~~~i~~~~~~~~r~~~l~-~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~ 120 (492) T protein:vir:97 42 PETLEEMIVRYIKQHLEKLPEISIGQ-EYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCccccccccccccccccccccccccccchHHHHHHHHhhhhcccCce Confidence 2222 111111110 0000000 0000000000000000000 00000111133577778888888888888877 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-cc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GL 151 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~ 151 (457) +...++. ....+..++. | ...+....+..+++.+|.+|..+..+..+...+..++|..+.++.+... +. T Consensus 121 ~~~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~~~~~ 190 (492) T protein:vir:97 121 FKHTDDE-----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEE 190 (492) T ss_pred eccCchH-----HHHHHHHHHh--c---cHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCc Confidence 6332211 1112222221 2 2445566778899999999999988754445678899999988876432 21 Q ss_pred cceeeEEEEEeeecccceeEEeccceEEEeccC---------------------C---------ccCCccccchhHHHHH Q lcl|Aclame:pro 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM---------------------M---------LPGDFVGCSPISYARE 201 (457) Q Consensus 152 ~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~---------------------~---------~~~~~~G~s~~~~~~~ 201 (457) .......|.. ........+.+..+.++... + ..+...|.|-+..+.. T Consensus 191 ~~~~vr~~~~---~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~ 267 (492) T protein:vir:97 191 LEAFIRMYKL---ENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKT 267 (492) T ss_pred eEEEEEEEee---ccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchHhHHH Confidence 1111111211 11111122233333332210 0 0112358888998888 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHH Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQ 281 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e 281 (457) .++....+..-....+.....|-.++..-.. +....++..+. ..+++.++++.++..+........+.. T Consensus 268 liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (492) T protein:vir:97 268 LIDAYNRRLSDLSNTFKDSNELTYVLKNYDD---QELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKK 336 (492) T ss_pred HHHHHHHHHHHHHHHHHHhccceeeeecCCc---ccchhHHHHHh--------hccceecCCCCcceeEeccCCHHHHHH Confidence 8888887777777777777777776653222 22222222221 223455566656555554445566777 Q ss_pred HHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccce Q lcl|Aclame:pro 282 TRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRF 351 (457) Q Consensus 282 ~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~ 351 (457) ..+.+.+.|+..-++|..-.+.. +++.|+..++-.. ...+...+...++.|...++ .. ..... T Consensus 337 ~~~~L~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~-----~~-~~~~~ 409 (492) T protein:vir:97 337 YLDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IK-GEHKD 409 (492) T ss_pred HHHHHHHHHHHHhCCCCCCcccc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC-cccce Confidence 78888899999999886443221 2233332222111 11222233333333322221 11 12334 Q ss_pred EEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCC Q lcl|Aclame:pro 352 VKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAE 431 (457) Q Consensus 352 ~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 431 (457) +.+.+...+..+..+.++.+.++ .|+++..-+.+++++-.-+..+.+ .+...........+. ... T Consensus 410 i~v~f~~~~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Ele---------ri~~E~~~~~~~~~~----~~~ 474 (492) T protein:vir:97 410 VDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELE---------RIEQEQTEYNKQLPN----LDD 474 (492) T ss_pred eeEEecCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHH---------HHHHHHHHHHHhhhc----ccc Confidence 55666777788899999998887 488988778888765322111111 111111100000000 000 Q ss_pred CCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 432 EPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) ...++..+. +++.++ +.+ T Consensus 475 ~~~~~~~~~--~~~~~~---~~e 492 (492) T protein:vir:97 475 GGADSAQQQ--ERSNNK---ESE 492 (492) T ss_pred CCCCCCccc--cccccc---ccC Confidence 000000000 000000 000 No 199 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.57 E-value=2.7e-07 Score=56.64 Aligned_cols=403 Identities=11% Similarity=-0.020 Sum_probs=181.3 Q ss_pred Cchhhhhhcccccc--cccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) ..++.++..+.... +.... .+.+...-.. ............ .=+..+.....|+..+..+-+-|+.+....+ T Consensus 19 ~~~l~~~i~~~~~~~~r~~~~-~~yy~g~~~i---~~~~~~~~~~~~--~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~ 92 (453) T protein:vir:39 19 NEVVTKFMEKHRLEVARYEYL-KNMYRGIMAI---DAEPTKDLWKPD--NRLTVNFTKYIVDTFTGYFNGIPVKKSHSDK 92 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhccCch---hcCCCccccCcc--ceeecchHHHHHHHHhhhhcccCceeccCCh Confidence 23333332221110 00000 0001000000 000000000001 1123566777888888888778876643221 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) . ....+..++.. .........+..+.+.+|.+|+.+..+..+...+..++|..+.+..+............ T Consensus 93 ~-----~~~~l~~i~~~----N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~ir 163 (453) T protein:vir:39 93 E-----TLSKLQEFDNL----NDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPENMFMVYDDTIKQEPLFAVR 163 (453) T ss_pred H-----HHHHHHHHHHh----cChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEecCCCCCeEEEEEE Confidence 1 11123333332 24456778888999999999999988764445677889998888776533221111111 Q ss_pred EEEeeecccceeEEeccceEEEeccCC--------------------ccCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMM--------------------LPGDFVGCSPISYARESIGLALAAQKYGAHFFR 218 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~--------------------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 218 (457) |... .........+.++.+.++.... ..+...|.|-+..+...++....+..-....+. T Consensus 164 ~~~~-~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~ 242 (453) T protein:vir:39 164 YGYD-DDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYFNEERMSIFESVISLVNAFNKAISEKANDVD 242 (453) T ss_pred EEEe-CCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHH Confidence 1111 1111111222333333322110 012346888888888888777766666666666 Q ss_pred ccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCH Q lcl|Aclame:pro 219 NGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPP 298 (457) Q Consensus 219 n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp 298 (457) ....|-.++.. ...+++....++... ..... .....+++.++..+........+.+..+.+.+.|+..-++|. T Consensus 243 ~~~~p~~~~~g-~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~ 315 (453) T protein:vir:39 243 YFSDQYLTFLG-AAVEEEDLKNIRSNR---VINYY---GESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN 315 (453) T ss_pred HhhCceeeeec-CCCCchhhhhhhhcc---eeeec---CCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 66777666653 334444444332210 00000 001112334444444444455566777888888888888885 Q ss_pred HHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 299 HLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 299 ~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~ 368 (457) .-.+. -++.|+..++.+. ...+..+|...++.+...++.+- .......+.+.+...+..|..+.+ T Consensus 316 ~~~~~--~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~~~~i~v~f~~~~p~~~~~~a 390 (453) T protein:vir:39 316 ISDES--FGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVS---NKEAWKDIEYTFTRNEPKDIKEQA 390 (453) T ss_pred ccccc--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CccccccceEEeCCCCCcCHHHHH Confidence 33221 1333443332211 22233344444443333322110 111222345666677788899999 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 369 ELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 369 ~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) +.+.++ .|+++..-+.+++++-+-+..+. ..+....... ... ......+.+..+.+.+++. T Consensus 391 ~~~~kl--~g~is~et~l~~l~~v~D~~~E~---------~ri~~E~~~~---~~~-----~~~~~~~~~~~~~~~~~~~ 451 (453) T protein:vir:39 391 ETANIL--MGITSQETALSVISVIPDVQAEM---------EKIKKEEAST---AIF-----DKDKQPSEKGTDTVVPETN 451 (453) T ss_pred HHHHHH--hccCChHHHHHhCCCCCCHHHHH---------HHHHHHHHHH---HHH-----HHhccCCCCCCCCCCCCcC Confidence 998887 57898877888886532211111 1111111100 000 0000000000111111111 Q ss_pred cc Q lcl|Aclame:pro 449 GE 450 (457) Q Consensus 449 ~~ 450 (457) .| T Consensus 452 ~e 453 (453) T protein:vir:39 452 EE 453 (453) T ss_pred CC Confidence 11 No 200 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.54 E-value=3.2e-07 Score=56.17 Aligned_cols=359 Identities=12% Similarity=0.099 Sum_probs=161.0 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCH--HHH--hccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTP--HDA--LQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) |..+. .|... ....+... .....-+..+-. +.. +...+...+|+.+++.+.=-.|. . T Consensus 1 l~~~~---~r~~~------~~~yY~g~-------~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~---~ 61 (410) T protein:vir:95 1 MNLYQ---SRVNL------RYKHYAMQ-------HYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRAFA---N 61 (410) T ss_pred CCcch---hhHHH------HHHHhcCC-------CCccccchhccHHHHhHHHhhcchhHHHHHHhHhhhcccccc---C Confidence 22221 00000 00000000 000000000111 101 12345555666666544322221 1 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) .+..+..++.. .+.......+..+.+++|++|+.+..+...-..+.+++|.++.++.+...+.... T Consensus 62 --------~d~~l~~i~~~----N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~-- 127 (410) T protein:vir:95 62 --------DDFNVTEIFDR----NNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVE-- 127 (410) T ss_pred --------CCchHHHHHhh----cChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCceEE-- Confidence 11224444433 2344566777889999999999998764333567899999998888764432211 Q ss_pred EEEEEeeecccc---eeEEeccceE---------------------EEeccCCccCCccccchh----HHHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGNEV---LLGWFTPRDV---------------------LHIPGMMLPGDFVGCSPI----SYARESIGLALA 208 (457) Q Consensus 157 ~~y~~~~~~~~~---~~~~~~~~ev---------------------ih~~~~~~~~~~~G~s~~----~~~~~~i~~~~~ 208 (457) .+.+......+ ....+.++.+ ++|.+....+..+|.|-+ ..+.+.+..... T Consensus 128 -al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~ 206 (410) T protein:vir:95 128 -GYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLE 206 (410) T ss_pred -EEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHH Confidence 11111111110 1122333333 444332222345777743 333333333333 Q ss_pred HHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccC-----cceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 209 AQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTE-----GAKFSKVAMSPDEAQFLQTR 283 (457) Q Consensus 209 ~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~-----g~~~~~~~~s~~d~~~~e~~ 283 (457) -......+| +.|.-++..- +.+.+..+.++.. .++++.++. +.++.++....-+ .|++.+ T Consensus 207 ~~~~~~e~~---a~pqr~i~G~-d~d~~~~~~~~~~----------~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l 271 (410) T protein:vir:95 207 RADITAEFY---SWPQKYILGL-DPDAEPMEKWKAT----------VSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQL 271 (410) T ss_pred HHHHHHHHh---cchhheeecc-CCCCCcCchhhhh----------hhhheeccCCCCCCcceEEecCCCChH-HHHHHH Confidence 333333443 4455545421 1111111222211 234555543 3456555433222 488999 Q ss_pred HHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhh------hcCccc---cccceEEE Q lcl|Aclame:pro 284 QFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRL------LFAETA---DRFRFVKF 354 (457) Q Consensus 284 ~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~------ll~~~~---~~~~~~~f 354 (457) +.....||..-++|++.+|......+|+..+..+...+... +.-....+...|.+. +..... .......+ T Consensus 272 ~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~k-a~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v 350 (410) T protein:vir:95 272 RTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLA-GRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAV 350 (410) T ss_pred HHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeE Confidence 99999999999999999997654333333333222222221 222222223333221 111111 11112222 Q ss_pred ecc---hhhhccHHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCC Q lcl|Aclame:pro 355 NLD---EIKRGAPKERMELWSLGLQN--GIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAP 423 (457) Q Consensus 355 ~~~---~~~~~d~~~~~~~~~~~~~~--g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~ 423 (457) .+. .....+..+.++++.|++++ |+....-+++++|+.+-+ ... .. .+.+.+.++ T Consensus 351 ~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~--~~~-~~-----------~~e~~~~g~ 410 (410) T protein:vir:95 351 KWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDM--SAK-PV-----------VSEGGSNGE 410 (410) T ss_pred EeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHH--HHH-HH-----------HHHHHhCCC Confidence 232 23344568888999999998 677677789999996432 110 00 000111111 No 201 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.50 E-value=7.7e-09 Score=65.08 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=91.8 Q ss_pred EEecCC-----CCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHH Q lcl|Aclame:pro 226 VVEVPG-----TMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHL 300 (457) Q Consensus 226 ~~~~~~-----~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 300 (457) |+++++ ..+.++..+....+ ..+. ++.+.+.+...+.+|..++.+...+. +........||++-+||... T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~-~~~~--~~~~~~~ld~~~e~~e~~~~~lsGl~--d~l~~~~~~iaa~s~iP~t~ 75 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQV-DNNS--GVGQAIGIDADSEEYNVLNSDIGGID--TFLSQKFDRIVALSGIHEII 75 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHH-HHhh--hhhhhheeecCCcceeeeecCcCChH--HHHHHHHHHHHhHhcCchhh Confidence 333221 01122222222222 2222 22345566666678888887766543 56788889999999999988 Q ss_pred hccccccccccchHHHHHHHHH-------HHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH----- Q lcl|Aclame:pro 301 ISDATNSTSWGSGLAEQNIAFT-------MFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM----- 368 (457) Q Consensus 301 lg~~~~~~~~~~~~e~~~~~~~-------~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~----- 368 (457) |-....++.+++ .+...++|| ..-+.|.+.++-.. +.. ...|.|.+.+|...+.++++ T Consensus 76 LfG~sp~Glnat-ge~d~~nyyd~i~~~Qe~~l~p~le~l~~~----~~~-----~~~~~~~f~pL~~~s~kekAei~~~ 145 (201) T protein:vir:10 76 LKGKNVGGVSAS-QNTALETFYGYVDRKRKAELLPLLEFLLPF----IVT-----EQEWSVEFNPLSQVSDKDKSEILEK 145 (201) T ss_pred hcCCCCcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC-----CCCceEeeCCCCCCCHHHHHHHHHH Confidence 854444444322 233344444 23445555443332 111 12466778888777766554 Q ss_pred --HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccC Q lcl|Aclame:pro 369 --ELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNA 442 (457) Q Consensus 369 --~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (457) +++++++++|+++++|+|+.+--.+..+..++ +.+..+. ......++.+. ++++ T Consensus 146 ~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~------~~~~~~~--------~~~e~~dp~~~------~~~~ 201 (201) T protein:vir:10 146 NVNSVAALIAAGIIDADEARDTLRAISTEVKIGE------GSIQTEV--------VINESEDPLDV------SANN 201 (201) T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCC------CCCCccc--------cccccCCCCCC------CCCC Confidence 45666889999999999998755433321111 0000000 00000000000 0000 No 202 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.48 E-value=5e-07 Score=55.15 Aligned_cols=398 Identities=10% Similarity=0.004 Sum_probs=177.5 Q ss_pred Cchhhhhhccccc--ccccccccccccccchhh-----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALDAAEGRAWEPYDPSI-----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) =-++.++..+... +...... ..+...-... ....+..... .+..-+.++....+++..+..+-+-|+++ T Consensus 29 ~~~i~~~i~~~~~~~~~~~~~~-~YY~g~~~i~~~~~~~~~~~~~~~~---~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~ 104 (474) T protein:vir:97 29 EEMIVRLIDDHRKQLDKITVGQ-RYYDKDNDIVKQMKKVDVHGNIDYD---KPDWRITTNFHQNLVDQKVSYVASKPVTY 104 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhccccchhcccchhccccccccc---cCcceeecchHHHHHHHHHhhhhcCCcee Confidence 0111111111000 0000000 0000000000 0000000000 00111235667778888888888888876 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-ccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~ 152 (457) -...+ .....+..... .........++.+.+.+|.+|+.+..+......+..++|..+.+..+... +.. T Consensus 105 ~~~d~---------~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~ 174 (474) T protein:vir:97 105 SCEDE---------NVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREEL 174 (474) T ss_pred ccCcH---------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCce Confidence 43221 11122222111 23456667778899999999999887765556778899999988876432 111 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccC------------------------------CccCCccccchhHHHHHH Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM------------------------------MLPGDFVGCSPISYARES 202 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~------------------------------~~~~~~~G~s~~~~~~~~ 202 (457) ......|.. .+......+..+.+.+++.. ...+..+|.|-+..+... T Consensus 175 ~~~ir~~~~---~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 251 (474) T protein:vir:97 175 KSFIRYYKF---NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSI 251 (474) T ss_pred EEEEEEEEe---cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHH Confidence 111122211 11111222333333332110 011234788989988888 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 203 IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 203 i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) ++....+.......+...+.|-.++..-...+ .+.+.... ...+++.++++.++..+........+.+. T Consensus 252 iDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~---~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 320 (474) T protein:vir:97 252 IDAIDKRLSDAQNMFDESVELIYILKGYEGED---LEEFMRGL--------KYYKAINVDGDGGVETIQVEVPVSSTKEY 320 (474) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCCccc---chhhhhhh--------hccceeeccCCCceeEEeecCCHHHHHHH Confidence 88888777777766777777777665432211 11222211 13455666666666666555455556677 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|...-++|..-.+.. .++.|+..++-+ ....+..+|..+++.|...++. . .....+ T Consensus 321 ~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~----~--~d~~~i 393 (474) T protein:vir:97 321 IDLMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNL----K--TDVKDI 393 (474) T ss_pred HHHHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--ccccee Confidence 7888888888888885332211 223333222211 1122333344444333332221 1 122234 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.++.-+..+..+.++. ++.+|+++..-+++++++- +++.. .+....+.+....... +.... T Consensus 394 ~v~f~~~~p~~~~e~a~~---~~~~g~iS~et~l~~l~~v--~D~~~----------E~eri~~E~~~~~~~~--~~~~~ 456 (474) T protein:vir:97 394 EISFNFNRMMNDAEQSQI---IAQSQYLSRETLVKSSPLV--DDYKA----------ELERIEQEQMEYNKQL--PNLDD 456 (474) T ss_pred eEEeccCcccCHHHHHHH---HHHcCCCCHHHHHHhCCCC--CCHHH----------HHHHHHHHHHHHHhhc--cccCC Confidence 444455555565555554 5567999998888887652 22110 1111111110000000 00111 Q ss_pred CCCCCCcccCCCCccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGE 450 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (457) .+.+.++..++.+..++| T Consensus 457 ~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 457 GGADGAQQQEGSNNKESE 474 (474) T ss_pred CCCCCcccCCCCcccccC Confidence 111111111111111111 No 203 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.48 E-value=5e-07 Score=55.15 Aligned_cols=398 Identities=10% Similarity=0.004 Sum_probs=177.5 Q ss_pred Cchhhhhhccccc--ccccccccccccccchhh-----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALDAAEGRAWEPYDPSI-----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 73 (457) =-++.++..+... +...... ..+...-... ....+..... .+..-+.++....+++..+..+-+-|+++ T Consensus 29 ~~~i~~~i~~~~~~~~~~~~~~-~YY~g~~~i~~~~~~~~~~~~~~~~---~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~ 104 (474) T protein:vir:94 29 EEMIVRLIDDHRKQLDKITVGQ-RYYDKDNDIVKQMKKVDVHGNIDYD---KPDWRITTNFHQNLVDQKVSYVASKPVTY 104 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhccccchhcccchhccccccccc---cCcceeecchHHHHHHHHHhhhhcCCcee Confidence 0111111111000 0000000 0000000000 0000000000 00111235667778888888888888876 Q ss_pred EEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-ccc Q lcl|Aclame:pro 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLR 152 (457) Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~ 152 (457) -...+ .....+..... .........++.+.+.+|.+|+.+..+......+..++|..+.+..+... +.. T Consensus 105 ~~~d~---------~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~ 174 (474) T protein:vir:94 105 SCEDE---------NVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREEL 174 (474) T ss_pred ccCcH---------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCce Confidence 43221 11122222111 23456667778899999999999887765556778899999988876432 111 Q ss_pred ceeeEEEEEeeecccceeEEeccceEEEeccC------------------------------CccCCccccchhHHHHHH Q lcl|Aclame:pro 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM------------------------------MLPGDFVGCSPISYARES 202 (457) Q Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~------------------------------~~~~~~~G~s~~~~~~~~ 202 (457) ......|.. .+......+..+.+.+++.. ...+..+|.|-+..+... T Consensus 175 ~~~ir~~~~---~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 251 (474) T protein:vir:94 175 KSFIRYYKF---NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSI 251 (474) T ss_pred EEEEEEEEe---cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHH Confidence 111122211 11111222333333332110 011234788989988888 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHH Q lcl|Aclame:pro 203 IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQT 282 (457) Q Consensus 203 i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~ 282 (457) ++....+.......+...+.|-.++..-...+ .+.+.... ...+++.++++.++..+........+.+. T Consensus 252 iDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~---~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 320 (474) T protein:vir:94 252 IDAIDKRLSDAQNMFDESVELIYILKGYEGED---LEEFMRGL--------KYYKAINVDGDGGVETIQVEVPVSSTKEY 320 (474) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCCccc---chhhhhhh--------hccceeeccCCCceeEEeecCCHHHHHHH Confidence 88888777777766777777777665432211 11222211 13455666666666666555455556677 Q ss_pred HHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceE Q lcl|Aclame:pro 283 RQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFV 352 (457) Q Consensus 283 ~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~ 352 (457) .+.+.+.|...-++|..-.+.. .++.|+..++-+ ....+..+|..+++.|...++. . .....+ T Consensus 321 ~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~----~--~d~~~i 393 (474) T protein:vir:94 321 IDLMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNL----K--TDVKDI 393 (474) T ss_pred HHHHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--ccccee Confidence 7888888888888885332211 223333222211 1122333344444333332221 1 122234 Q ss_pred EEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC Q lcl|Aclame:pro 353 KFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE 432 (457) Q Consensus 353 ~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (457) .+.++.-+..+..+.++. ++.+|+++..-+++++++- +++.. .+....+.+....... +.... T Consensus 394 ~v~f~~~~p~~~~e~a~~---~~~~g~iS~et~l~~l~~v--~D~~~----------E~eri~~E~~~~~~~~--~~~~~ 456 (474) T protein:vir:94 394 EISFNFNRMMNDAEQSQI---IAQSQYLSRETLVKSSPLV--DDYKA----------ELERIEQEQMEYNKQL--PNLDD 456 (474) T ss_pred eEEeccCcccCHHHHHHH---HHHcCCCCHHHHHHhCCCC--CCHHH----------HHHHHHHHHHHHHhhc--cccCC Confidence 444455555565555554 5567999998888887652 22110 1111111110000000 00111 Q ss_pred CCCCCCcccCCCCccccc Q lcl|Aclame:pro 433 PADDEEPDNAEGDPDEGE 450 (457) Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (457) .+.+.++..++.+..++| T Consensus 457 ~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 457 GGADGAQQQEGSNNKESE 474 (474) T ss_pred CCCCCcccCCCCcccccC Confidence 111111111111111111 No 204 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=98.47 E-value=5.3e-07 Score=55.01 Aligned_cols=403 Identities=11% Similarity=-0.026 Sum_probs=185.7 Q ss_pred Cchhhhhhccccc--ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) =..+.++...... +..... ...+...-.. .......... ...-+.++.....|+..+.-+-+-|+.+...++ T Consensus 19 ~~~i~~~i~~~~~~~~r~~~~-~~yy~g~~~i---~~~~~~~~~~--~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~ 92 (453) T protein:vir:73 19 DKVVNDFMKKHQEEVERYEYL-GNMYKGIMEI---SSQKAKDSWK--PDNRLTNNFAKYIVDTFVGYFNGIPIKKTHDDK 92 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccccch---hcCCCCCccC--ccceeecchHHHHHHHhhhhhcccCceeecCCh Confidence 0111111111100 000000 0000000000 0000000000 011123566667778777777677776533211 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) .....+...............+..+.+.+|.+|..+..+..+...+..++|..+.+..+............ T Consensus 93 ---------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~i~ 163 (453) T protein:vir:73 93 ---------SVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVFMVYDDSIKQKPLFAVY 163 (453) T ss_pred ---------HHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEeCCCCceeEEEEE Confidence 11122222222234555677888999999999999988754445677889988877776543322222211 Q ss_pred EEEeeecccceeEEeccceEEEeccCC--------------------ccCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 YDIDADGNEVLLGWFTPRDVLHIPGMM--------------------LPGDFVGCSPISYARESIGLALAAQKYGAHFFR 218 (457) Q Consensus 159 y~~~~~~~~~~~~~~~~~evih~~~~~--------------------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 218 (457) |.... .+......+..+.++++.... ..+...|.|-+..+...++....+..-...... T Consensus 164 ~~~~~-~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~ 242 (453) T protein:vir:73 164 YGFDE-EGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVTSEKANDVE 242 (453) T ss_pred EEEec-CceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH Confidence 22211 122222334444444443210 012246888888888888877777666666666 Q ss_pred ccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCH Q lcl|Aclame:pro 219 NGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPP 298 (457) Q Consensus 219 n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp 298 (457) ....|..+++.. ...++....++..-. ........+.....+.+.++..+.....+..+....+.+.+.|+..-++|. T Consensus 243 ~~~~~~l~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 320 (453) T protein:vir:73 243 YFSDQYLVFLGA-EVDEEDAKNIKDNRL-INFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAAN 320 (453) T ss_pred HhccceeeeecC-CCCchhhhccccccc-ccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 777777766533 334444444332111 111111223333444555665555444555567777888889999888885 Q ss_pred HHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHH Q lcl|Aclame:pro 299 HLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM 368 (457) Q Consensus 299 ~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~ 368 (457) .-. ...++.|+..++.+. ...+..+|...++.+...++..- .......+.+.+...+..+..+.+ T Consensus 321 ~~~--~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~~~~i~v~f~~~~p~~~~~~a 395 (453) T protein:vir:73 321 ISD--ENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNAS---NKDAWKDIEYTFTRNEPKDIKEQA 395 (453) T ss_pred cCc--ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CccccccceEEeCCCCCCCHHHHH Confidence 322 222333443332111 22233333333333322222110 111222445666777788999999 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 369 ELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 369 ~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457) +.+.+++ |+++..-+.+++++-+-+. .+ +..+........ ..+.......++..-++. T Consensus 396 ~~~~k~~--giis~et~~~~~~~~~d~~--~E-------~~ri~~E~~~~~---------~~~~~~~~~~~~~~~~~~ 453 (453) T protein:vir:73 396 ETANILK--GITSEETALSVISVIPDVQ--AE-------MEKIKKKKLLQL---------SLTRTSNLVRMKQMRGNL 453 (453) T ss_pred HHHHHHh--ccCcHHHHHHhCCCCCCHH--HH-------HHHHHHHHHHHH---------HHHHhccCCcchhhhcCC Confidence 9998886 7888776777776532111 10 001111111000 000111111111111111 No 205 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.46 E-value=5.6e-07 Score=54.86 Aligned_cols=385 Identities=14% Similarity=0.016 Sum_probs=176.0 Q ss_pred Cc--hhhhhhccccc--ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MG--FWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg--~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) |- ++.++..+... ++.... .+.+...- ..+......... ...-+.++....+|+..+..+-+-|+++... T Consensus 1 l~~~~l~~~i~~~~~~~~r~~~l-~~yy~g~~---~il~~~~~~~~~--~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~ 74 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSYSAY-KQLYEGDH---AILQQKQKEQYK--PDNRLVVNFAKYIVDTFNGYFIGVPVQTSHE 74 (429) T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhcccc---ccccccccccCC--CcceeecchHHHHHHHHhhhhcccCceeecC Confidence 11 11111111100 000000 00000000 000000000000 0112345677888888888888888776432 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) .+. ....+..++.. .........+..+.+.+|.+|+.+..+..+...+..++|..+.+..+.......... T Consensus 75 ~~~-----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~ 145 (429) T protein:vir:98 75 NKQ-----VSNYLELLDGY----NDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPLFA 145 (429) T ss_pred ChH-----HHHHHHHHHhh----cCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceEEE Confidence 211 11122222222 234567788889999999999999877544456778899888877665432211111 Q ss_pred EEEEEeeecccceeEEeccc--------------------------eEEEeccCCccCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPR--------------------------DVLHIPGMMLPGDFVGCSPISYARESIGLALAAQ 210 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~--------------------------evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~ 210 (457) ..|... . +......+... -|++++ +...|.|-+..+...++....+. T Consensus 146 i~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liD~~d~~~ 218 (429) T protein:vir:98 146 VRYFYN-K-GGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYV-----ENEERQSLLASVVTLINAFNKAI 218 (429) T ss_pred EEEEEe-c-CceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEec-----CCCCCCCcHHHHHHHHHHHHHHH Confidence 111110 0 01111111111 122221 23478899998888888888777 Q ss_pred HHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccC----cceeeeccCChhHHHHHHHHHHH Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTE----GAKFSKVAMSPDEAQFLQTRQFQ 286 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~----g~~~~~~~~s~~d~~~~e~~~~~ 286 (457) .-....+..+..|-.+++.. ..+++....++. .+++.++. +.++..+........+....+.+ T Consensus 219 s~~~~~~~~~~~p~~~i~g~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 285 (429) T protein:vir:98 219 SEKANDVEYFADAYLKILGA-ELDDETLKSLRD------------TRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRL 285 (429) T ss_pred HHHHHHHHHhcCceeeeecC-CCCcchhhhHhh------------CceeeccCCCCCCcceeEEeecCCHHHHHHHHHHH Confidence 77777677777787776633 233332222111 22333321 23444444333444456677888 Q ss_pred HHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEec Q lcl|Aclame:pro 287 VPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNL 356 (457) Q Consensus 287 ~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~ 356 (457) .+.|+..-++|..-.+ ..++.|+..++.+.. ..+..++.-.++.+...++..- .......+.+.+ T Consensus 286 ~~~i~~~s~~p~~~~~--~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---~~~d~~~i~v~f 360 (429) T protein:vir:98 286 ENLIFRTAMVANISDE--SFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKI---GPKDWIGIKYKF 360 (429) T ss_pred HHHHHHHhCccccCcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccccccceEEe Confidence 9999999999853332 223333332221111 1222222222222222221110 011122355666 Q ss_pred chhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 357 DEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 357 ~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) ...+..|..+.++.+.++ .|+++..-+.+++++-+-+. . .+....+.+...... .....+. T Consensus 361 ~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d~~--~----------E~~ri~~E~~~~~~~-----~~~~~~~ 421 (429) T protein:vir:98 361 TRNLPANLLEESQIAGNL--AGIVSEETQVGVLSIVENPQ--K----------EIERKNSDKSTLISR-----QAGGLNG 421 (429) T ss_pred CCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHH--H----------HHHHHHHHHHHHHHH-----HHhhhcC Confidence 778888999999998887 58898866888776532111 1 111111111100000 0000000 Q ss_pred CCcccCCCCcc Q lcl|Aclame:pro 437 EEPDNAEGDPD 447 (457) Q Consensus 437 ~~~~~~~~~~~ 447 (457) ++.+.+.| T Consensus 422 ---~~~~~~~~ 429 (429) T protein:vir:98 422 ---QNTTTILE 429 (429) T ss_pred ---CCCCCCCC Confidence 11111111 No 206 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.46 E-value=5.8e-07 Score=54.78 Aligned_cols=398 Identities=9% Similarity=-0.024 Sum_probs=179.0 Q ss_pred Cch----hhhhhcccccc--cccccccccccccchhh-----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGF----WSALFGRGHSP--ALDAAEGRAWEPYDPSI-----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~----~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) .-+ +.++..+.... ..... ...+...-... ....+... ..-+..-+.+......++..+.-+-+- T Consensus 25 ~~~~~~~i~~~i~~~~~~~~~~~~l-~~Yy~g~~~i~~~~~~~~~~~~~~---~~~~~~ki~~n~~k~Iv~~~~~yl~g~ 100 (474) T protein:vir:95 25 VETQEEMIIRLINNHKQKLKDINVG-QKYYDKDNDINYQAYKQDLHGNID---YTKPDWRITTNFHQNLVDQKVSYVAGK 100 (474) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhcccCccccccchhhhccccc---ccccccccccchHHHHHHhhhhhhccc Confidence 101 11111100000 00000 00000000000 00000000 000011123566677888888888888 Q ss_pred ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC Q lcl|Aclame:pro 70 PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD 149 (457) Q Consensus 70 p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~ 149 (457) |+++....+. ....+..++. .........++.+++.+|.+|..+..+......+..++|..+.++.+... T Consensus 101 p~~~~~~~~~-----~~~~l~~~~~-----n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~ 170 (474) T protein:vir:95 101 PVTYAHDDDK-----VLDVIHQVLD-----TRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKE 170 (474) T ss_pred CceeccCChH-----HHHHHHHHHh-----ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCC Confidence 8876432221 1112222222 23556677788999999999999887754455778899999988765432 Q ss_pred -cccceeeEEEEEeeecccceeEEeccceEEEeccCC------------------------------ccCCccccchhHH Q lcl|Aclame:pro 150 -GLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM------------------------------LPGDFVGCSPISY 198 (457) Q Consensus 150 -~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~------------------------------~~~~~~G~s~~~~ 198 (457) +........|.. ........+.++.|.++..-. ..+...|.|-+.. T Consensus 171 ~~~~~a~ir~~~~---~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~ 247 (474) T protein:vir:95 171 REQLNAFIRIFTF---NGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWM 247 (474) T ss_pred CCceEEEEEEEee---cCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHH Confidence 111111111211 111122233444444432110 0122468888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHH Q lcl|Aclame:pro 199 ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQ 278 (457) Q Consensus 199 ~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~ 278 (457) +...++....+..-....+.....|-.+++.- +.+....+...+ ...+++.++++.++..+........ T Consensus 248 v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~---~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:95 248 YKSFVDAIDKRLSDVQNMFDESVELIYILRGY---EGEDLSEFMEGL--------KYYKAINVSSDGGVETIQVEVPVAS 316 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhcCC---Ccccccchhhhh--------hccceeeccCCCceeEEeccCCHHH Confidence 88888887776666666666666676655432 112222222222 1234566666666666655555566 Q ss_pred HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccc Q lcl|Aclame:pro 279 FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADR 348 (457) Q Consensus 279 ~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~ 348 (457) +....+.+.+.|...-++|..-.... .++.|+..++.. ....+...|..+++.|...+. .... T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g------~~~d 389 (474) T protein:vir:95 317 TKEYLDMMRAYIVEFGQGVDFQTDKF-GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK------IKLD 389 (474) T ss_pred HHHHHHHHHHHHHHHhCCcCcccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcc Confidence 67778888899999999986443211 223333222211 112222333333333322111 1112 Q ss_pred cceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCC Q lcl|Aclame:pro 349 FRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDP 428 (457) Q Consensus 349 ~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 428 (457) ...+.+.+...+..+..+.++.+ .++|+++.-.+++++++-.-+..+.+ .+...... ..+. ... T Consensus 390 ~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et~~~~lp~v~D~~~E~e---------ri~~E~~~---~~~~-~~~ 453 (474) T protein:vir:95 390 AKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKETLVRHHPWVDDPKAELE---------RLDEEQLE---LNKQ-LPN 453 (474) T ss_pred cceeeEEecCCCccCHHHHHHHH---HHcCCCChHHHHHhCCCCCCHHHHHH---------HHHHHHHH---HHhh-ccc Confidence 23455556666667777666654 45799999888888765322111111 11111100 0000 000 Q ss_pred CCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 429 PAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~ 450 (457) .... ..+..++..+.+.++.| T Consensus 454 ~~~~-~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 454 LDDG-GADGAQQQQQSENNQSK 474 (474) T ss_pred cccc-cCCCCCCcCCCCccccC Confidence 0000 00111111111111111 No 207 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.46 E-value=5.8e-07 Score=54.78 Aligned_cols=398 Identities=9% Similarity=-0.024 Sum_probs=179.0 Q ss_pred Cch----hhhhhcccccc--cccccccccccccchhh-----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MGF----WSALFGRGHSP--ALDAAEGRAWEPYDPSI-----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATL 69 (457) Q Consensus 1 Mg~----~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 69 (457) .-+ +.++..+.... ..... ...+...-... ....+... ..-+..-+.+......++..+.-+-+- T Consensus 25 ~~~~~~~i~~~i~~~~~~~~~~~~l-~~Yy~g~~~i~~~~~~~~~~~~~~---~~~~~~ki~~n~~k~Iv~~~~~yl~g~ 100 (474) T protein:vir:96 25 VETQEEMIIRLINNHKQKLKDINVG-QKYYDKDNDINYQAYKQDLHGNID---YTKPDWRITTNFHQNLVDQKVSYVAGK 100 (474) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhcccCccccccchhhhccccc---ccccccccccchHHHHHHhhhhhhccc Confidence 101 11111100000 00000 00000000000 00000000 000011123566677888888888888 Q ss_pred ceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC Q lcl|Aclame:pro 70 PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD 149 (457) Q Consensus 70 p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~ 149 (457) |+++....+. ....+..++. .........++.+++.+|.+|..+..+......+..++|..+.++.+... T Consensus 101 p~~~~~~~~~-----~~~~l~~~~~-----n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~ 170 (474) T protein:vir:96 101 PVTYAHDDDK-----VLDVIHQVLD-----TRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKE 170 (474) T ss_pred CceeccCChH-----HHHHHHHHHh-----ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCC Confidence 8876432221 1112222222 23556677788999999999999887754455778899999988765432 Q ss_pred -cccceeeEEEEEeeecccceeEEeccceEEEeccCC------------------------------ccCCccccchhHH Q lcl|Aclame:pro 150 -GLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM------------------------------LPGDFVGCSPISY 198 (457) Q Consensus 150 -~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~------------------------------~~~~~~G~s~~~~ 198 (457) +........|.. ........+.++.|.++..-. ..+...|.|-+.. T Consensus 171 ~~~~~a~ir~~~~---~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~ 247 (474) T protein:vir:96 171 REQLNAFIRIFTF---NGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWM 247 (474) T ss_pred CCceEEEEEEEee---cCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHH Confidence 111111111211 111122233444444432110 0122468888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHH Q lcl|Aclame:pro 199 ARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQ 278 (457) Q Consensus 199 ~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~ 278 (457) +...++....+..-....+.....|-.+++.- +.+....+...+ ...+++.++++.++..+........ T Consensus 248 v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~---~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:96 248 YKSFVDAIDKRLSDVQNMFDESVELIYILRGY---EGEDLSEFMEGL--------KYYKAINVSSDGGVETIQVEVPVAS 316 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhcCC---Ccccccchhhhh--------hccceeeccCCCceeEEeccCCHHH Confidence 88888887776666666666666676655432 112222222222 1234566666666666655555566 Q ss_pred HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccc Q lcl|Aclame:pro 279 FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADR 348 (457) Q Consensus 279 ~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~ 348 (457) +....+.+.+.|...-++|..-.... .++.|+..++.. ....+...|..+++.|...+. .... T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g------~~~d 389 (474) T protein:vir:96 317 TKEYLDMMRAYIVEFGQGVDFQTDKF-GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK------IKLD 389 (474) T ss_pred HHHHHHHHHHHHHHHhCCcCcccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcc Confidence 67778888899999999986443211 223333222211 112222333333333322111 1112 Q ss_pred cceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCC Q lcl|Aclame:pro 349 FRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDP 428 (457) Q Consensus 349 ~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 428 (457) ...+.+.+...+..+..+.++.+ .++|+++.-.+++++++-.-+..+.+ .+...... ..+. ... T Consensus 390 ~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et~~~~lp~v~D~~~E~e---------ri~~E~~~---~~~~-~~~ 453 (474) T protein:vir:96 390 AKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKETLVRHHPWVDDPKAELE---------RLDEEQLE---LNKQ-LPN 453 (474) T ss_pred cceeeEEecCCCccCHHHHHHHH---HHcCCCChHHHHHhCCCCCCHHHHHH---------HHHHHHHH---HHhh-ccc Confidence 23455556666667777666654 45799999888888765322111111 11111100 0000 000 Q ss_pred CCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 429 PAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~ 450 (457) .... ..+..++..+.+.++.| T Consensus 454 ~~~~-~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 454 LDDG-GADGAQQQQQSENNQSK 474 (474) T ss_pred cccc-cCCCCCCcCCCCccccC Confidence 0000 00111111111111111 No 208 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=98.44 E-value=6.3e-07 Score=54.59 Aligned_cols=432 Identities=9% Similarity=-0.027 Sum_probs=186.8 Q ss_pred Cch------hhhhhcccc----cccccccccccccccchhhh----ccccccc-CccccCHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGF------WSALFGRGH----SPALDAAEGRAWEPYDPSIY----NLGATAS-SGERVTPHDALQVSAVFASVRLLSET 65 (457) Q Consensus 1 Mg~------~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ 65 (457) |-+ |...+.... .+..... ...+...-.... ....... ......+..=+.+....-.++..+.- T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~y 86 (537) T protein:vir:78 8 KPIDQLGGLLNTEITTYMASNHIKWAHIG-ENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQY 86 (537) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchhhhcccccccccccccccccccccccccchHHHHHHHHhhh Confidence 211 111110000 0000000 000000000000 0000000 00000011112344556677777878 Q ss_pred hccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEE Q lcl|Aclame:pro 66 IATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHM 145 (457) Q Consensus 66 ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~ 145 (457) +-+-|+++....++ .......+...+. .........+..++..+|.+|.++..+......+..++|..+-++. T Consensus 87 l~G~Pv~~~~~d~~------~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~~~~pv~ 159 (537) T protein:vir:78 87 LLSNGVEVKVKDED------NTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGLTLIPVF 159 (537) T ss_pred hcccCceeecCcch------hHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccceeEEEE Confidence 88888876533221 1122333332221 2344566778889999999999988776555667888999888777 Q ss_pred cCCCcccceeeEEEEEe-eecc--c----ceeEEeccceEEEeccCC--------------------------------- Q lcl|Aclame:pro 146 VMVDGLRRKVFEAYDID-ADGN--E----VLLGWFTPRDVLHIPGMM--------------------------------- 185 (457) Q Consensus 146 ~~~~~~~~~~~~~y~~~-~~~~--~----~~~~~~~~~evih~~~~~--------------------------------- 185 (457) +..+.... ....|... .... . .....+.++.|.+++... T Consensus 160 d~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 238 (537) T protein:vir:78 160 DDYGVLKM-IIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFE 238 (537) T ss_pred cCCCCcee-EEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeecccccccccc Confidence 65443322 22222111 0000 0 112234445554442110 Q ss_pred -------------------ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 186 -------------------LPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWR 246 (457) Q Consensus 186 -------------------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~ 246 (457) ..+...|.|-+..+...|+....+..-..+.+.....|-.++.--...+. .+++..++ T Consensus 239 ~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~~---~~~~~~l~ 315 (537) T protein:vir:78 239 DTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDST---DKLRQNIK 315 (537) T ss_pred ccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCccc---hhHHHHHh Confidence 01223688889999999988888877777777776666665553221111 12222222 Q ss_pred HHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH----------H Q lcl|Aclame:pro 247 AANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA----------E 316 (457) Q Consensus 247 ~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e----------~ 316 (457) . .+.+.+-+++.++..+.............+.+.+.|...-.+|. ......++.|+..+. . T Consensus 316 ~-------~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~--~~~~~~gn~SGvAlk~~~~~l~~ka~ 386 (537) T protein:vir:78 316 A-------KKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFN--STAVGDGNVTNVVIKSRYTLLAMKAR 386 (537) T ss_pred h-------cCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCC--CccccccCCcHHHHHHHHhhHHHHHH Confidence 1 11222323343444443332333334445555666665544442 122223344443222 1 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~ 396 (457) .....+..+|+-.++.|...++.+ .........+.+.+..-+..|..+.++.+.++++.|+++..-+.+.+++- ++ T Consensus 387 ~ke~~f~~~l~~~~~~i~~~~~~~--~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~v--dd 462 (537) T protein:vir:78 387 KMETSLRKVLRWCADMVVSDIALR--GLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRI--GD 462 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--CCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCC--CC Confidence 122333444444444444444322 11112334566777788889999999999999999999988888776442 22 Q ss_pred CCCceeee---cccccccccccccccccC-------CCccCC-CCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 397 GLGEKYRV---PLNLGEIGEEPEPEPAPA-------PPAIDP-PAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 397 ~~gd~~~~---~~n~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) ++-.+... .............+.... .+..++ ..+....+-.+++..+++..+-.-|-.+- T Consensus 463 ~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 534 (537) T protein:vir:78 463 DETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPVADPNVVPPTDPNAV 534 (537) T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCCCCCCCCCCCCCccC Confidence 11000000 000000000000000000 000000 00001111122333333333322221111 No 209 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=98.40 E-value=8.2e-07 Score=53.94 Aligned_cols=397 Identities=13% Similarity=0.031 Sum_probs=178.9 Q ss_pred Cc--hhhhhhccccc--ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MG--FWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg--~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) |. .+.++..+... ++.... ...+...-. ........... +..-+..+.....++..+..+-+-|+++... T Consensus 17 ~~~~~i~~~i~~~~~~~~r~~~~-~~Yy~g~~~---i~~~~~~~~~~--~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~ 90 (452) T protein:vir:36 17 ITVEVVTKFMEKHKLEVARYEYL-KNMYLGIMA---IDDEPAKDSWK--PDNRLAVNFTKYIVDTFTGYFNGIPVKKSHS 90 (452) T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhccccc---cccCccccccC--ccceeecchHHHHHHHHhhhhcccCceeecC Confidence 22 22332221111 000000 000000000 00000000000 0111235666777888887777778766432 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceee Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVF 156 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~ 156 (457) .+. ....+..++. ..........+..+.+.+|.+|..+..+..+...+..++|..+.+..+.......... T Consensus 91 d~~-----~~~~l~~~~~----~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~ 161 (452) T protein:vir:36 91 DKE-----ILTKLQEFDN----LNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMVYDDTVKQEPLFA 161 (452) T ss_pred Chh-----HHHHHHHHHh----hcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEE Confidence 211 1112222322 2335566778889999999999998887544456778899988877665432211111 Q ss_pred EEEEEeeecccceeEEeccceEEEeccC--------------------CccCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 EAYDIDADGNEVLLGWFTPRDVLHIPGM--------------------MLPGDFVGCSPISYARESIGLALAAQKYGAHF 216 (457) Q Consensus 157 ~~y~~~~~~~~~~~~~~~~~evih~~~~--------------------~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 216 (457) ..|.... ........+.++.++++... ...+...|.|-+..+...++....+..-.... T Consensus 162 i~~~~~~-~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~s~~~~~ 240 (452) T protein:vir:36 162 VRYGVDE-DKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYFNEERMSIFESVISLVNAFNKAISEKAND 240 (452) T ss_pred EEEEEec-CceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecCCCCCCcchHHHHHHHHHHHHHHHHHHHH Confidence 1111111 11111122333333332110 00122368888888888888777777667666 Q ss_pred HHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-----CcceeeeccCChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 FRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIA 291 (457) Q Consensus 217 ~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia 291 (457) +.....|-.++.. ...+++.....+. .+++.+. .+.++..+........+....+.+.+.|+ T Consensus 241 ~~~~~~p~~~~~g-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~ 307 (452) T protein:vir:36 241 VDYFSDQYLTFLG-AAVEEEDLKNIRS------------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIF 307 (452) T ss_pred HHHhcCceeEeec-CCcCchhhhhhhh------------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHH Confidence 7677777766653 3334333322211 1122221 12234444433345556677788889999 Q ss_pred HHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhh Q lcl|Aclame:pro 292 RIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKR 361 (457) Q Consensus 292 ~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~ 361 (457) ..-++|..-. ...++.|+..++.. ....+..+|...++.|...+..+ . .......+.+.+...+. T Consensus 308 ~~s~~p~~~~--~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~-~~~~~~~i~i~f~~~~p 382 (452) T protein:vir:36 308 QTTMVANISD--ESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNV--S-NKDSWKDIEYTFTRNEP 382 (452) T ss_pred HHhCccccCc--ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C-CccccccceEEeCCCCC Confidence 9999986332 22233344332211 11222333333333333322211 0 11122234555667778 Q ss_pred ccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 362 GAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 362 ~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) .|..+.++.+.++ .|+++..-+.+++++-.-+. . .+......+..... .......+ T Consensus 383 ~d~~~~a~~~~k~--~g~iS~et~~~~~~~~~d~~--~----------E~~ri~~E~~~~~~--~~~~~~~~-------- 438 (452) T protein:vir:36 383 KDIKEQAETANIL--MGITSQETALSVISVIPDVQ--A----------EMEKIKKEEASTAI--FDKDKQPS-------- 438 (452) T ss_pred cCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH--H----------HHHHHHHHHHHHHH--HHhhccCC-------- Confidence 8899999998887 58898877888776532111 1 11111111100000 00000000 Q ss_pred CCCCccccccccccC Q lcl|Aclame:pro 442 AEGDPDEGETEDDDD 456 (457) Q Consensus 442 ~~~~~~~~~~~~~~~ 456 (457) +.+.++..++|+++ T Consensus 439 -~~~~~~~~~~~~~e 452 (452) T protein:vir:36 439 -EKGTDTVVSETNEE 452 (452) T ss_pred -CCcccccCccccCC Confidence 00111111111111 No 210 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=98.25 E-value=2e-06 Score=51.79 Aligned_cols=410 Identities=12% Similarity=0.001 Sum_probs=175.6 Q ss_pred Cc--hhhhhhccccc--ccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MG--FWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg--~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) |. ++.++..+... +..... ...+... ............ -+..-+.+.....+++..+.-+-+-|+.+... T Consensus 16 ~~~~~i~~~i~~~~~~~~~~~~l-~~Yy~g~----~~i~~~~~~~~~-~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~ 89 (499) T protein:vir:10 16 PNIEAINYAIRELQNRKKRLDKL-SDYYNGK----QEIEKHEFDNAT-VEAANVMVNHAKYITDMNVGFMTGNPVKYVAE 89 (499) T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhccc----cchhcCCcCcCC-CCcceeecchHHHHHHHHhhhhcccCceeecC Confidence 11 01111111100 000000 0000000 000000000000 00111234566678888887777778765432 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-Cc----------------eeEEEEeccc Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PN----------------IAGLDVLDPT 139 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~----------------~~~~~~l~p~ 139 (457) .+. ....+..++.. .....+...+..+.+.+|.+|..+..+. |. ...+..++|. T Consensus 90 ~~~-----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~ 160 (499) T protein:vir:10 90 KGK-----NIDDILEVFNQ----IDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPR 160 (499) T ss_pred Chh-----HHHHHHHHHhh----cCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEccc Confidence 221 11122333222 2345677888899999999999886553 32 1335667787 Q ss_pred eeEEEEcCCCcccceeeEEEEEeeec--cc--ceeEEeccceEEEeccC----------------C---------ccCCc Q lcl|Aclame:pro 140 KIHVHMVMVDGLRRKVFEAYDIDADG--NE--VLLGWFTPRDVLHIPGM----------------M---------LPGDF 190 (457) Q Consensus 140 ~v~~~~~~~~~~~~~~~~~y~~~~~~--~~--~~~~~~~~~evih~~~~----------------~---------~~~~~ 190 (457) .+.++.+............|...... .. .....+.++.|.++... + ..+.. T Consensus 161 ~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 240 (499) T protein:vir:10 161 ATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNE 240 (499) T ss_pred ceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCC Confidence 77666654433211111111111100 00 11122333444433210 0 01224 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCccee--ccCcceee Q lcl|Aclame:pro 191 VGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVAL--LTEGAKFS 268 (457) Q Consensus 191 ~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~v--l~~g~~~~ 268 (457) .|.|-+..+...++....+..-....+...+.|-.+++.......+.. ...+ ..+.+.. .+++.+++ T Consensus 241 ~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~d~~ 309 (499) T protein:vir:10 241 ERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDD---IQRL--------KRGAIEAPPREEGADIE 309 (499) T ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccccch---hhhh--------hhcceeccCCCCCCcce Confidence 578888888888888777766666667777777777664321111110 1111 1122222 34556666 Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH----------HHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 269 KVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA----------EQNIAFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 269 ~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~l~ 338 (457) .+........+....+.+.+.|....++|..-.+.. .++.|+...+ ......+..++.-.++.+...++ T Consensus 310 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~ 388 (499) T protein:vir:10 310 WLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKF-MGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVN 388 (499) T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 665544455566777778888888888874222111 1222332221 11122333333333333333332 Q ss_pred hhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccc- Q lcl|Aclame:pro 339 RLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEP- 417 (457) Q Consensus 339 ~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~- 417 (457) .+ ........+.+.+..-+..+..+.++.+.++ .|+++.--+++++++-.-+..+.+ .+....+. T Consensus 389 ~~---~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~---------ri~~E~~~~ 454 (499) T protein:vir:10 389 IK---GANDDASGCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVID---------EMNQQDAET 454 (499) T ss_pred cc---CCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHH---------HHHHHHHHH Confidence 11 1111222445556677788899999999887 588998778888765321111111 11111000 Q ss_pred ----ccccCCCccCCCCCCCCCCCCcccCCCCccccccc-cccCC Q lcl|Aclame:pro 418 ----EPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETE-DDDDA 457 (457) Q Consensus 418 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 457 (457) +........+....++. . .+.++..++.+ +...+ T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 493 (499) T protein:vir:10 455 IKKNQEALRGQDPDRLELEDK-----Q-DDSSENDKEAGSNHNQS 493 (499) T ss_pred HHHHHhhhccCCCCCCCCCCC-----C-cccCCCCCCCccccccC Confidence 00000000000000000 0 00000111111 11111 No 211 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.23 E-value=2.3e-06 Score=51.53 Aligned_cols=400 Identities=10% Similarity=-0.023 Sum_probs=174.1 Q ss_pred Cc-----hhhhhhccccc--ccccccccccccccchhhhcccccccCcccc--CHHHHhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MG-----FWSALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERV--TPHDALQVSAVFASVRLLSETIATLPL 71 (457) Q Consensus 1 Mg-----~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~v~~~i~~ia~~ia~~p~ 71 (457) .+ ++.++...... +..... .+.+................+... -+..-+.++....+++..+.-+-+-|+ T Consensus 23 ~~~~~~~~i~~~i~~~~~~~~~~~~~-~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~ 101 (478) T protein:vir:10 23 KYETQEEMILRLVREHKENIDNITMG-ERYYNHHPDILDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPV 101 (478) T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCCe Confidence 00 01111000000 000000 000000000000000000000000 000112345666788888888878888 Q ss_pred EEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-c Q lcl|Aclame:pro 72 STYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-G 150 (457) Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~ 150 (457) ++....+.. ...+..++. | ...+....++.+.+.+|.+|+.+..+..+...+..++|..+.++.+... + T Consensus 102 ~~~~~~d~~-----~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~~p~~~~~i~d~~~~~ 171 (478) T protein:vir:10 102 TFGVDNDKA-----LKQIQHTLN--H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWTNKERD 171 (478) T ss_pred eeecCChHH-----HHHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCCC Confidence 764322211 112222222 2 3556677788899999999999877754445677889988887765432 2 Q ss_pred ccceeeEEEEEeeecccceeEEeccceEEEeccC-------------------------Cc---------cCCccccchh Q lcl|Aclame:pro 151 LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGM-------------------------ML---------PGDFVGCSPI 196 (457) Q Consensus 151 ~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~-------------------------~~---------~~~~~G~s~~ 196 (457) ........|... +......+.++.|.++... ++ .+..+|.|-+ T Consensus 172 ~~~~~v~~~~~~---~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n~~~g~sd~ 248 (478) T protein:vir:10 172 ELQAFIRVYELD---GAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDL 248 (478) T ss_pred ceEEEEEEEEec---CceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEeccCCCCCCcH Confidence 111111122111 1111122233333322110 00 1234788988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceec--cCcceeeeccCCh Q lcl|Aclame:pro 197 SYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALL--TEGAKFSKVAMSP 274 (457) Q Consensus 197 ~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl--~~g~~~~~~~~s~ 274 (457) ..+...++....+..-....+.....|-.++..-...+. ......+. ..+++.+ .+|.++..+.... T Consensus 249 ~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~ 317 (478) T protein:vir:10 249 FMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDM---KDFMHNLK--------YYKAISVAGESGSGVDTIKVEV 317 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc---chhhhhhh--------hcceEEecCCCCCcceEEeecC Confidence 888888888887776666666767777666553322111 11111111 1222323 2334444444333 Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCc Q lcl|Aclame:pro 275 DEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAE 344 (457) Q Consensus 275 ~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~ 344 (457) ....+.+..+.+.+.|...-++|..-.+.. .++.|+..++.+. ...+..+|...++.|...+ . T Consensus 318 ~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~-----g- 390 (478) T protein:vir:10 318 PIDSVKEYTKMLRDYIIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY-----R- 390 (478) T ss_pred ChHHHHHHHHHHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C- Confidence 455566778888888999888886443221 2233332222111 1122222222222222211 1 Q ss_pred cccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCC Q lcl|Aclame:pro 345 TADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPP 424 (457) Q Consensus 345 ~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~ 424 (457) .......+.+.+...+..|..+.++.+.++ +|+++...+++++++-.-+..+. ..+... +....+. T Consensus 391 ~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~---------~ri~~E---~~~~~~~ 456 (478) T protein:vir:10 391 LDVKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEM---------ERIEQE---NIELNQQ 456 (478) T ss_pred CCcccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHH---------HHHHHH---HHHHHhh Confidence 111222345556667778889999988876 68899888888887532211111 111111 1110111 Q ss_pred ccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 425 AIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) ..+. . .+..+.+++..+++.+| T Consensus 457 ~~~~-~-~~~~~~~~~~~~~~~~~ 478 (478) T protein:vir:10 457 LPDI-E-EGLNGEQQRQSENNQPE 478 (478) T ss_pred cccc-c-cccCCCCCCCCCCCCCC Confidence 0000 0 00111111111111111 No 212 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=98.16 E-value=3.7e-08 Score=61.30 Aligned_cols=268 Identities=14% Similarity=0.132 Sum_probs=129.9 Q ss_pred hccHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCc Q lcl|Aclame:pro 50 LQVSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPN 129 (457) Q Consensus 50 ~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~ 129 (457) +. .-.+...|.++ .+..+...+......-...+-..--.-|-+.+-..-++.+++ +.+.|..... T Consensus 1 ~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------- 65 (279) T protein:vir:40 1 MS----LFNLSRRAEDV---SFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFY-WALQGKEVYR------- 65 (279) T ss_pred Cc----ccccchhhccc---ceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhccceeeh------- Confidence 00 00111112222 233332221110000000000000112222232223333333 2333332211 Q ss_pred eeEEEEeccceeEEEEcCCCcccceeeE----EEEEeeecccceeEEeccceEEEeccCCccCCccccchhHHHHHHHHH Q lcl|Aclame:pro 130 IAGLDVLDPTKIHVHMVMVDGLRRKVFE----AYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGL 205 (457) Q Consensus 130 ~~~~~~l~p~~v~~~~~~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~ 205 (457) ...++..++... .+....+.+.....++|-.||..| .++.+|.-+- ....-+++ T Consensus 66 ----------------~~~~~~~~~~~~~~~d~fn~~vr~~~~~~vtVP~~Dv~Ii-----eNPlv~v~~e-e~~kM~~l 123 (279) T protein:vir:40 66 ----------------VWYGGFKYYAQRVNADQFNIVVREPNRREVTIRTNDYEML-----LNPFYGANPQ-RFGVMFGM 123 (279) T ss_pred ----------------hhhhhHHHHHhhcCcchhhhheecCCcceeEeecchhhhh-----hcchheeccc-hhhHHHHH Confidence 111222111100 111112222222334444444433 2344565554 23333443 Q ss_pred HHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 206 ALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) Q Consensus 206 ~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~ 284 (457) . .+..-..+.+.+...++++++.+ ..++..++.+.++.++...+.+-+++.+++.|.++++++.+-.-.. .+-.. T Consensus 124 a---~nai~~KLD~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYStsl-k~die 199 (279) T protein:vir:40 124 A---SNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDAN 199 (279) T ss_pred H---HhhhhhhhcccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeecccccccc-HHHHH Confidence 3 33334445788888999998866 4466667888888888888877789999999999999986544433 34457 Q ss_pred HHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHH------hhhcCccccccceEEEecch Q lcl|Aclame:pro 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN------RLLFAETADRFRFVKFNLDE 358 (457) Q Consensus 285 ~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~------~~ll~~~~~~~~~~~f~~~~ 358 (457) +.+.+.+..+|||..+|- ++..|++..+|+..+|.|++++.+-.|. .+.++...+ T Consensus 200 ~lkS~l~Sq~GinekIL~--------GsAtE~q~iAyy~rtVePILkQyek~liY~~E~fv~y~ttta~----------- 260 (279) T protein:vir:40 200 LAIEIALSEYGMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYISTTAK----------- 260 (279) T ss_pred HHHHHHHhhcCCchhhcc--------ccCchhhhhhHHHhhHHHHHHHhcccccchhhhhhhhheeccc----------- Confidence 778999999999999993 3445788999999999999999776433 222222111 Q ss_pred hhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 359 IKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 359 ~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) +|.+ |-.-...+-+|+.++ T Consensus 261 ------------------gg~~--~s~~~~~~~~~~~~~ 279 (279) T protein:vir:40 261 ------------------GGAI--ESKSSKRDSEPVGND 279 (279) T ss_pred ------------------Cccc--ccccccccCCCCCCC Confidence 1111 000111122233221 No 213 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=98.00 E-value=7.4e-06 Score=48.71 Aligned_cols=397 Identities=8% Similarity=-0.012 Sum_probs=178.9 Q ss_pred Cchhhhhhccccc--ccccccccccccc------cchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFWSALFGRGHS--PALDAAEGRAWEP------YDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~~~l~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) ..+.+++.....+ +..... .+.+.. .........+.......-.+..-+.+......++..+.-+-+-|++ T Consensus 7 ~~~i~~~~~~~~~~~~~~~~~-~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~G~p~~ 85 (470) T protein:vir:10 7 KKLIQNTSTSRNDLINNYKQA-VNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVASVFPD 85 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhheecccee Confidence 1111111110000 000000 000000 0000000000000000000011223555666778788888888887 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-cc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GL 151 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~ 151 (457) +....+.. ...+..++.. +..+-+..+..+++.+|.+|..+..+...-..+..++|..+.++.+... +. T Consensus 86 ~~~~d~~~-----~~~l~~~~~~-----~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~~~~ 155 (470) T protein:vir:10 86 IDVGKDAD-----NKKIIDVLGD-----DRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTLDNK 155 (470) T ss_pred eecCchHH-----HHHHHHHHhh-----hHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCc Confidence 64433211 1223333321 2445556678889999999999988764555678899999888876542 11 Q ss_pred cceeeEEEEEeeecccc---eeEEeccceEEEeccC----------------------------------------CccC Q lcl|Aclame:pro 152 RRKVFEAYDIDADGNEV---LLGWFTPRDVLHIPGM----------------------------------------MLPG 188 (457) Q Consensus 152 ~~~~~~~y~~~~~~~~~---~~~~~~~~evih~~~~----------------------------------------~~~~ 188 (457) .......|......+.. ....+.++.+.|++.. ...+ T Consensus 156 ~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 235 (470) T protein:vir:10 156 LLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSK 235 (470) T ss_pred eEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeec Confidence 11222222211111110 1122333333333210 0011 Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-----C Q lcl|Aclame:pro 189 DFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-----E 263 (457) Q Consensus 189 ~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~ 263 (457) ...|.|-+..+...|+....+..-..+.+...+.|-.++..-...+.+ ++...+.. .+.+.++ . T Consensus 236 n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~---~~~~~~~~--------~~~i~~~~~~~~~ 304 (470) T protein:vir:10 236 NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLH---QFMNDLRK--------YKSIKINNTGNGD 304 (470) T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccc---hhhhhhhh--------cCeEeccCCCCCc Confidence 236888899999999888887777777777777777777643222211 12222211 1222221 1 Q ss_pred cceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHH----------HHHHHHHHHhhHHHHH Q lcl|Aclame:pro 264 GAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQ----------NIAFTMFSLRPWLERI 333 (457) Q Consensus 264 g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~i 333 (457) +.+++-+........+....+.+.+.|...-++|..-. ...++.|+..++-. ....+..+|.-.++.| T Consensus 305 ~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~--~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i 382 (470) T protein:vir:10 305 NSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPAN--FESSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAI 382 (470) T ss_pred CceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23333333333334456677888888988888886322 22234444332211 1222333333333333 Q ss_pred HHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccc Q lcl|Aclame:pro 334 EAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGE 413 (457) Q Consensus 334 e~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~ 413 (457) ...+ .........+.+.+...+..|.++.++.+.++ .|+++..-+++++++-.-+..+. ..+.. T Consensus 383 ~~~l-----~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v~D~~~E~---------eri~~ 446 (470) T protein:vir:10 383 MRYL-----NFSDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIVDDWQQEL---------KDLAK 446 (470) T ss_pred HHHh-----cccCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHH---------HHHHH Confidence 3322 22222334566777888889999999998886 58998877888775422111111 11111 Q ss_pred ccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 414 EPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) . +....+. . + +.++..+++.++++ T Consensus 447 E---~~e~~~~-----~-~----~~~~~~~~~~dde~ 470 (470) T protein:vir:10 447 D---KEENDPY-----S-N----QADELNGKGVNDEQ 470 (470) T ss_pred H---HHHHHHh-----h-c----cccccCCCCCCCCC Confidence 1 0000000 0 0 00011111111111 No 214 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=97.98 E-value=8.3e-06 Score=48.43 Aligned_cols=393 Identities=10% Similarity=-0.044 Sum_probs=172.9 Q ss_pred Cch--hhh----hhccccc--ccccccccccccc--------c--chhhhcccccccCccccCHHHHhccHHHHHHHHHH Q lcl|Aclame:pro 1 MGF--WSA----LFGRGHS--PALDAAEGRAWEP--------Y--DPSIYNLGATASSGERVTPHDALQVSAVFASVRLL 62 (457) Q Consensus 1 Mg~--~~~----l~~~~~~--~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~i 62 (457) |-+ +.. +..+..+ +...... ..+.. . ..................+..-+.++....+++.. T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~-~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~ 79 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAE-KYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQK 79 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhh Confidence 211 111 1000000 0000000 00000 0 00000000000000000011123456667778888 Q ss_pred HHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEEecccee Q lcl|Aclame:pro 63 SETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDVLDPTKI 141 (457) Q Consensus 63 a~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~l~p~~v 141 (457) +.-+-+-|+++...++. ....+..++. | ........+...++.+|.+|..+..+. .+...+..++|..+ T Consensus 80 ~~yl~G~p~~~~~~~~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~ 149 (471) T protein:vir:10 80 KAYALTYPPTFDVDDKK-----VNDMIVDVLG--D---DYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEV 149 (471) T ss_pred hhhhcccCceeccCChH-----HHHHHHHHHh--c---CHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccce Confidence 88887888776432211 1111222221 2 244556777889999999999987763 34456778899998 Q ss_pred EEEEcCCCcc-cceeeEEEEEeee---cccceeEEeccceEEEeccCC-------------------------------c Q lcl|Aclame:pro 142 HVHMVMVDGL-RRKVFEAYDIDAD---GNEVLLGWFTPRDVLHIPGMM-------------------------------L 186 (457) Q Consensus 142 ~~~~~~~~~~-~~~~~~~y~~~~~---~~~~~~~~~~~~evih~~~~~-------------------------------~ 186 (457) .++.+..... .......|..... ........+..+.+.|++... + T Consensus 150 ~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471) T protein:vir:10 150 IPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHD 229 (471) T ss_pred EEEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCC Confidence 8777654321 1111112211110 011111223344444432110 0 Q ss_pred ---------cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCc Q lcl|Aclame:pro 187 ---------PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHR 257 (457) Q Consensus 187 ---------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~ 257 (457) .+...|.|-+..+...++....+..-..+.+...+.|-.++........ .+....+.. .+ T Consensus 230 ~g~iPvv~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~---~~~~~~~~~--------~~ 298 (471) T protein:vir:10 230 FGLVPFIPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDK---QEFLEDLKR--------YK 298 (471) T ss_pred CCceeEEEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc---chhHHHhhc--------CC Confidence 0123578888888888888887776666666777777666554322111 112222211 11 Q ss_pred ceec-----cCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHH Q lcl|Aclame:pro 258 VALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFT 322 (457) Q Consensus 258 ~~vl-----~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~ 322 (457) ++.+ +.+.+++.+........+....+.+.+.|...-++|..-... .++.|+..++.+. ...+ T Consensus 299 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~--~gn~Sg~Alk~~~~~l~~k~~~~~~~~ 376 (471) T protein:vir:10 299 MIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDK--LGNSSGVALKFLYSLLELKAGNMETQF 376 (471) T ss_pred eEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCccc--ccCccHHHHHHHHHHHHHHHHHHHHHH Confidence 2222 122334444333334456677788888999998888643322 2344443332221 1122 Q ss_pred HHHHhhHHHHHHHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee Q lcl|Aclame:pro 323 MFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKY 402 (457) Q Consensus 323 ~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~ 402 (457) ..++.-.++.|... +... ....+.+.+...+..|.++.++.+.++ .|+++..-++++++.- +++. T Consensus 377 ~~~l~~~~~li~~~-----~~~~--d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v--~D~~---- 441 (471) T protein:vir:10 377 RSGYATLVKMILKH-----LGLS--DKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIV--EDWQ---- 441 (471) T ss_pred HHHHHHHHHHHHHH-----hccC--CCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCC--CCHH---- Confidence 22222222222222 2211 223456777788889999999998887 5889887788776542 2210 Q ss_pred eecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 403 RVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 403 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) ..+....+.+...... ..+. .+.+.+++.. T Consensus 442 ------~E~eri~~E~~~~~~~-~~~~----------~~~~~~~e~~ 471 (471) T protein:vir:10 442 ------DELRLQKAEQEGRSEK-LYDM----------EEVEHESEVE 471 (471) T ss_pred ------HHHHHHHHHHHHHHhc-cccc----------CCCCCccccC Confidence 0111111111000000 0000 0000000000 No 215 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=97.96 E-value=9.1e-06 Score=48.22 Aligned_cols=397 Identities=11% Similarity=0.014 Sum_probs=177.3 Q ss_pred Cchhhhhhcccccc--cccccccccccccchhhhcccccccCc--cccCHHHHhccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 1 MGFWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNLGATASSG--ERVTPHDALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) Q Consensus 1 Mg~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~ 76 (457) =.++.++..+.... ...... ..+...-....-.......+ ...-+..-+.++....+++..+.-+-+-|+++-.. T Consensus 28 ~~~i~~~i~~~~~~~~~~~~~~-~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~ 106 (474) T protein:vir:96 28 EEMIIRLINDHKPKIDDITVGE-RYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFSSD 106 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhccCCcchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCceeecC Confidence 01122221111000 000000 00000000000000000000 00001112345677778888888888888876432 Q ss_pred ccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-ccccee Q lcl|Aclame:pro 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GLRRKV 155 (457) Q Consensus 77 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~~~~~ 155 (457) ++. ....+..++. | ........+..+++.+|.+|..+..+..+...+..++|..+.++.+... +..... T Consensus 107 d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ 176 (474) T protein:vir:96 107 DDK-----SLKTIQEVLN--H---KWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPAEQAIPIWTNKERDTLKAF 176 (474) T ss_pred chH-----HHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEE Confidence 221 1122223332 1 3345566677889999999998877654445688899999988876432 222122 Q ss_pred eEEEEEeeecccceeEEeccceEEEeccC-------------------------Cc---------cCCccccchhHHHHH Q lcl|Aclame:pro 156 FEAYDIDADGNEVLLGWFTPRDVLHIPGM-------------------------ML---------PGDFVGCSPISYARE 201 (457) Q Consensus 156 ~~~y~~~~~~~~~~~~~~~~~evih~~~~-------------------------~~---------~~~~~G~s~~~~~~~ 201 (457) ...|... +......+..+.|.|+... ++ .+...|.|-+..+.. T Consensus 177 vr~~~~~---~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~ 253 (474) T protein:vir:96 177 IRYYRLD---GAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNNPQEMSDLFMYKT 253 (474) T ss_pred EEEEeec---CceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEeccCCCCCCcHHHHHH Confidence 2222211 1111122333333332210 00 122368888888888 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc-CcceeeeccCChhHHHHH Q lcl|Aclame:pro 202 SIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT-EGAKFSKVAMSPDEAQFL 280 (457) Q Consensus 202 ~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-~g~~~~~~~~s~~d~~~~ 280 (457) .++....+.....+.+.....|-.++..-...+ ...+...+ ...+++.++ +|.+++.+........+. T Consensus 254 liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~---~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 322 (474) T protein:vir:96 254 IIDAMDKRLSDTQNTFDESTELIYILKGYEGQD---LDEFMRNL--------KYYKAINVDGDGSGVDTIQIEVPVQSSK 322 (474) T ss_pred HHHHHHHHHHHHHHHHHHhccceeeeecCCccc---ccchhhhh--------hcCceEEecCCCCceeEEeecCChHHHH Confidence 888888777777777777777766665322211 11111111 123455554 455666665554455567 Q ss_pred HHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCccccccc Q lcl|Aclame:pro 281 QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAETADRFR 350 (457) Q Consensus 281 e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~~~~~~ 350 (457) +..+.+.+.|+..-++|..-.+. .+++.|+...+-.. ...+...|...++.|...+. .. .... T Consensus 323 ~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~----~~--~~~~ 395 (474) T protein:vir:96 323 EYLDMLRDYVIEFGQGVDFQQDK-FGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYK----LN--IKVQ 395 (474) T ss_pred HHHHHHHHHHHHHhCCccccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--cccc Confidence 77888899999999998754322 12333333222111 11222223333322222111 11 1222 Q ss_pred eEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCC Q lcl|Aclame:pro 351 FVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPA 430 (457) Q Consensus 351 ~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 430 (457) .+.+.+..-+..+..+.++. +.++|+++...+++++++- +++... +..+...........++...+.. T Consensus 396 ~i~i~f~~~~p~~~~e~~~~---~~~ag~iS~et~~~~~~~v--~d~~~E-------~~ri~~E~~e~~~~~~~~~~~~~ 463 (474) T protein:vir:96 396 DVEITFNFNVMVNELEQSQI---GVQSQYLSKETVVTNHPWV--DDPVAE-------LERIEQDNIDFNKQLPPLEGDAN 463 (474) T ss_pred eeeEEeccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCC--CCHHHH-------HHHHHHHHHHHHhcccccccccc Confidence 34455555566666665554 5668999998888887542 221110 11111111100000000000000 Q ss_pred CCCCCCCCcccCCCCcccccccc Q lcl|Aclame:pro 431 EEPADDEEPDNAEGDPDEGETED 453 (457) Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~ 453 (457) +. ..++++..+ T Consensus 464 ~~------------~~d~~~e~~ 474 (474) T protein:vir:96 464 GR------------AQDNESETN 474 (474) T ss_pred cc------------cCCCcccCC Confidence 00 111111111 No 216 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=97.85 E-value=1.5e-05 Score=47.04 Aligned_cols=397 Identities=10% Similarity=0.002 Sum_probs=173.8 Q ss_pred Cc-----hhhhhhccccc--ccccccccccccccchhh-----hcccccccCccccCHHHHhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MG-----FWSALFGRGHS--PALDAAEGRAWEPYDPSI-----YNLGATASSGERVTPHDALQVSAVFASVRLLSETIAT 68 (457) Q Consensus 1 Mg-----~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 68 (457) .+ ++.++..+... +..... ...+...-... ........ ..-+..-+.++....+++..+.-+-+ T Consensus 23 ~~~~~~~~i~~~i~~~~~~~~r~~~~-~~Yy~g~~~i~~~~~~~~~~~~~~---~~~~~~ki~~n~~k~ivd~~~~yl~g 98 (478) T protein:vir:10 23 KYETQEEMILRLVREHKENIDNITMG-ERYYNHHPDILDAPFKRDVNGDYD---ETKPDWRMYTNYHQNLVDQKVAYAVA 98 (478) T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhhcccccc---cccccceeccchHHHHHHHHhhhhcc Confidence 11 11111111000 000000 00000000000 00000000 00001112356777788888888888 Q ss_pred CceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCC Q lcl|Aclame:pro 69 LPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMV 148 (457) Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~ 148 (457) -|+++...++. ....+..++. ....+....+..+.+.+|.+|+.+..+......+..++|..+.+..+.. T Consensus 99 ~p~~~~~~~~~-----~~~~l~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~~p~~~~~v~d~~ 168 (478) T protein:vir:10 99 NPVTFGVDNDK-----ALKQIQHTLN-----HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWTNK 168 (478) T ss_pred cCceeecCChH-----HHHHHHHHHh-----ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCC Confidence 88876432211 1111222222 2456667777899999999999987775445567888999887776532 Q ss_pred -CcccceeeEEEEEeeecccceeEEeccceEEEeccCC-------------------------c---------cCCcccc Q lcl|Aclame:pro 149 -DGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM-------------------------L---------PGDFVGC 193 (457) Q Consensus 149 -~~~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~-------------------------~---------~~~~~G~ 193 (457) .+........|.. . +......+.++.|.+++... + .+...|. T Consensus 169 ~~~~~~~~ir~~~~--~-~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~ 245 (478) T protein:vir:10 169 ERDELQAFIRVYEL--D-GAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEV 245 (478) T ss_pred CCCceEEEEEEEee--e-CceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCC Confidence 2222122222221 1 11112233444444332210 0 1223688 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceec--cCcceeeecc Q lcl|Aclame:pro 194 SPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALL--TEGAKFSKVA 271 (457) Q Consensus 194 s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl--~~g~~~~~~~ 271 (457) |-+..+...++....+.......+.....|-.++....... .......+.. .+++.+ +.|.++..+. T Consensus 246 sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~ 314 (478) T protein:vir:10 246 SDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGED---MKDFMHNLKY--------YKAISVAGESGSGVDTIK 314 (478) T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCccc---ccchhhhhhh--------CceeEecCCCCCcceEEe Confidence 88888888888877766666666666666765554322111 1111111111 122222 2334444444 Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHH----------HHHHHHHhhHHHHHHHHHHhhh Q lcl|Aclame:pro 272 MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI----------AFTMFSLRPWLERIEAGFNRLL 341 (457) Q Consensus 272 ~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~----------~~~~~~l~P~~~~ie~~l~~~l 341 (457) .......+.+..+.+.+.|...-++|..-.+.. .++.|+..++-+.. ..+..+|.-.++.|... T Consensus 315 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~----- 388 (478) T protein:vir:10 315 VEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDF----- 388 (478) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCCcCcCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Confidence 444555667778888899999999986433211 23333332221111 11222222222222211 Q ss_pred cCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccccc Q lcl|Aclame:pro 342 FAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAP 421 (457) Q Consensus 342 l~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~ 421 (457) +.. ......+.+.+...+..+..+.++.+.++ .|+++..-+.+++++-. ++..+ +..+...... . T Consensus 389 ~~~-~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~--d~~~E-------~~ri~~E~~~---~ 453 (478) T protein:vir:10 389 YRL-DVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILGNHSWVQ--DPVAE-------MERIEQENIE---L 453 (478) T ss_pred hCC-CcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCC--CHHHH-------HHHHHHHHHH---H Confidence 111 11222345556667778888888887776 68898777777775421 11110 0011111100 0 Q ss_pred CCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 422 APPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) ... .+....+.+++ +...++.++.| T Consensus 454 ~~~--~~~~~~~~~d~--~~~~~~d~~~e 478 (478) T protein:vir:10 454 NQQ--LPDIEEGLNDE--QQRQSEDNQSE 478 (478) T ss_pred HHh--ccccCCCCccc--ccccCcCCCCC Confidence 000 00000000110 00111111111 No 217 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=97.82 E-value=1.7e-05 Score=46.78 Aligned_cols=390 Identities=9% Similarity=-0.008 Sum_probs=168.7 Q ss_pred Cchhh----hhhccccc--ccccccccccccccchhhhccccccc--CccccCHHHHhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 1 MGFWS----ALFGRGHS--PALDAAEGRAWEPYDPSIYNLGATAS--SGERVTPHDALQVSAVFASVRLLSETIATLPLS 72 (457) Q Consensus 1 Mg~~~----~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 72 (457) .-+.. ++...... +..... .+.+...-........... ......+..-+.++....+++..+.-+-+-|++ T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~~~~~-~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~ 102 (468) T protein:vir:96 24 YETQEEMILRLITKHKENVEDITVG-ERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPVT 102 (468) T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHhhhccCCce Confidence 11111 11100000 000000 0000000000000000000 000001111234566677788777777777877 Q ss_pred EEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCC-cc Q lcl|Aclame:pro 73 TYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVD-GL 151 (457) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~-~~ 151 (457) +-...+. ....+..++. | +..+....++.+.+.+|.+|+.+..+......+..++|..+.++.+... +. T Consensus 103 ~~~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~~~~~~~~ 172 (468) T protein:vir:96 103 YGTEDEK-----SLKTIQEVLN--H---KWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRVPAEQAIPIWTNKERDE 172 (468) T ss_pred eccCChH-----HHHHHHHHHh--c---CHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCc Confidence 6432211 1122233332 2 3456667788999999999998877755556678889988877765432 11 Q ss_pred cceeeEEEEEeeecccceeEEeccceEEEeccCC----------------------------------ccCCccccchhH Q lcl|Aclame:pro 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM----------------------------------LPGDFVGCSPIS 197 (457) Q Consensus 152 ~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~----------------------------------~~~~~~G~s~~~ 197 (457) .......|... .......+.++.+.|++... ..+...|.|-+. T Consensus 173 ~~~~ir~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n~~~g~sd~e 249 (468) T protein:vir:96 173 LKAFIRLYELD---GGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKNNPQEVSDLF 249 (468) T ss_pred eEEEEEEEEec---CceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecCCCCCCCchH Confidence 11111112111 11111223333333332110 012346888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceecc--CcceeeeccCChh Q lcl|Aclame:pro 198 YARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT--EGAKFSKVAMSPD 275 (457) Q Consensus 198 ~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~--~g~~~~~~~~s~~ 275 (457) .+...++....+.....+.+.....|-.++..-...+. ..+...+. .++++.++ ++.+++.+..... T Consensus 250 ~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~---~~~~~~~~--------~~~~i~~~~d~~~~~~~l~~~~~ 318 (468) T protein:vir:96 250 MYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGEDL---EEFMYNLK--------YYKAINVDGDGSGGVDTIQIDVP 318 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc---chhhhhhh--------cCceEEecCCCCCcceEEeecCC Confidence 88888888877777666677777777666653222111 11111111 12333332 3334444444434 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHHhhhcCcc Q lcl|Aclame:pro 276 EAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFNRLLFAET 345 (457) Q Consensus 276 d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~~~ll~~~ 345 (457) ...+....+.+.+.|...-++|..-. ....++.|+...+... ...+..+|.-+++.|...+ .. T Consensus 319 ~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~-----g~- 391 (468) T protein:vir:96 319 VQSAKEYLDMLRDYVIEFGQGVDFQQ-DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY-----KL- 391 (468) T ss_pred hHHHHHHHHHHHHHHHHHhCcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CC- Confidence 45566777888899999999886332 2222333333222111 1122222222222222211 11 Q ss_pred ccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCc Q lcl|Aclame:pro 346 ADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPA 425 (457) Q Consensus 346 ~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~ 425 (457) ......+.+.++.-+..|..+.++. +.+.|+++.-.+++++++- +++.. .+....+.+....... T Consensus 392 ~~d~~~i~i~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v--~D~~~----------E~~ri~~E~~~~~~~~ 456 (468) T protein:vir:96 392 SIKVQDVEITFNFNVMVNELEQSQI---GVNSQYLSKETVVTNHPWV--DDPVA----------EMERIDQEELALPSIE 456 (468) T ss_pred CcccceeeEEecCCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCC--CCHHH----------HHHHHHHHHHHHHHHh Confidence 1122234455556666676666554 4567999988788876442 22111 1111111111000000 Q ss_pred cCCCCCCCCCCCCcc Q lcl|Aclame:pro 426 IDPPAEEPADDEEPD 440 (457) Q Consensus 426 ~~~~~~~~~~~~~~~ 440 (457) . .- .+.++.+|+ T Consensus 457 ~--~~-~~~~~~~~~ 468 (468) T protein:vir:96 457 E--GL-NGKENNEPT 468 (468) T ss_pred h--cc-CCCCCCCCC Confidence 0 00 011111111 No 218 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=97.73 E-value=2.4e-05 Score=45.87 Aligned_cols=415 Identities=11% Similarity=-0.004 Sum_probs=170.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) +.++++...+ ..+..... ...+... ............--+..=+.++....+|+..+.-+-+-|+++....+ T Consensus 21 ~~~i~~~~~~-~~~r~~~~-~~yy~g~----~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~~~~d~-- 92 (489) T protein:vir:99 21 KNYISRFKAE-QLERLKEL-KRYYLGD----NNIKYRPAKTDKYAADNRIASDFAKYITVFEQGYMLGVPVEYKNENK-- 92 (489) T ss_pred HHHHHHHHHH-HHHHHHHH-HHHhccc----CccccccccccccCCcceeecchHHHHHHHHhhhhccCCceeecCCh-- Confidence 2222222110 00000000 0000000 00000000000000001133566777888888888777876543221 Q ss_pred eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe----cCCceeEEEEeccceeEEEEcCCCcc-ccee Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW----AGPNIAGLDVLDPTKIHVHMVMVDGL-RRKV 155 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~----~~g~~~~~~~l~p~~v~~~~~~~~~~-~~~~ 155 (457) .....+.+-........+...+..+++.+|.+|..+.. +......+..++|..+.+..+..... .... T Consensus 93 -------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~ 165 (489) T protein:vir:99 93 -------DLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIYDDTYQRNSLMA 165 (489) T ss_pred -------hHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEEcCCCCCceEEE Confidence 11222222222233456678888999999999987753 23344567788998888776643321 1111 Q ss_pred eEEEEEeeeccc--ceeEEeccceEEEeccCC--------------c---------cCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 FEAYDIDADGNE--VLLGWFTPRDVLHIPGMM--------------L---------PGDFVGCSPISYARESIGLALAAQ 210 (457) Q Consensus 156 ~~~y~~~~~~~~--~~~~~~~~~evih~~~~~--------------~---------~~~~~G~s~~~~~~~~i~~~~~~~ 210 (457) ...|......+. .....+.++.+.+++... + .+...|.|.+..+...++....+. T Consensus 166 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~s~~~~v~~liDa~d~~~ 245 (489) T protein:vir:99 166 VHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANNEERTGAYESVLDNIDAYDLSQ 245 (489) T ss_pred EEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecCCCCCCchhhhHHHHHHHHHHH Confidence 111211111000 111223333333332110 0 112357777777777777666655 Q ss_pred HHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHH------hccccccCcceeccCcc-------eeeeccCChhHH Q lcl|Aclame:pro 211 KYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAA------NSGVDNAHRVALLTEGA-------KFSKVAMSPDEA 277 (457) Q Consensus 211 ~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------~~~~~n~~~~~vl~~g~-------~~~~~~~s~~d~ 277 (457) .-..........|-.++.... ...+...+....+... .......++++.+..+. ++..+....... T Consensus 246 s~~~~~~~~~~~~~l~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (489) T protein:vir:99 246 SELANFQQDSVNALLVIAGNA-YTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTA 324 (489) T ss_pred HHHHHHHHHhhhhhhhhccCC-cccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCChH Confidence 554444444444544443221 1111111222221110 00111223344443332 333333333344 Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH----------HHHHHHHHHHhhHHHHHHHHHHhhhcCcccc Q lcl|Aclame:pro 278 QFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE----------QNIAFTMFSLRPWLERIEAGFNRLLFAETAD 347 (457) Q Consensus 278 ~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~~ 347 (457) .+....+.+.+.|...-++|..-.. ...++.|+..++. .....+...|.-.++.|...+...-...... T Consensus 325 ~~~~~~~~l~~~i~~~s~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~ 403 (489) T protein:vir:99 325 GSEAYKNRLVADILRFTFTPDTQDM-KFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTY 403 (489) T ss_pred HHHHHHHHHHHHHHHHhCCcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc Confidence 4556677888999999999863321 1123334433221 1122333344444444433332111111111 Q ss_pred -ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCcc Q lcl|Aclame:pro 348 -RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAI 426 (457) Q Consensus 348 -~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~ 426 (457) ....+.+.+..-+..|..+.++.+.++. |+++...+.++++. +.++..+. -+..+...... ....... T Consensus 404 ~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~--v~~~d~~~-----E~~ri~~E~~~--~~~~~~~ 472 (489) T protein:vir:99 404 SLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNT--VTGVDAEA-----ELKRLKEEADK--KQSLPEP 472 (489) T ss_pred cccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCC--CCchhHHH-----HHHHHHHHHHH--Hhccccc Confidence 1123556667777888999999988875 88998888877643 21100100 01111111000 0000000 Q ss_pred CCCCCCCCCCCCcccCCCCc Q lcl|Aclame:pro 427 DPPAEEPADDEEPDNAEGDP 446 (457) Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~ 446 (457) ....+..++. ++.++.| T Consensus 473 ~~~~~~~~~~---~~~~~~p 489 (489) T protein:vir:99 473 RLVGDASGQE---EPTAEKP 489 (489) T ss_pred cccCCCCCCc---CCCCCCC Confidence 0000000000 1111111 No 219 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=97.23 E-value=2.8e-05 Score=45.53 Aligned_cols=312 Identities=15% Similarity=0.159 Sum_probs=139.2 Q ss_pred Cchhhhhhcccccccccccc--cccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAE--GRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) ||||+ |++.+.......+ .+.....+.+ .+.+.+. +.+.+-+|+.+|.- +-.|.... T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~ 59 (320) T protein:vir:97 1 MGIFN--FKKRETLTPELKESIIRQVTIEDES--PFTGTTD----------------FNVRNEVAESIATY-LGAYKTSA 59 (320) T ss_pred CCccc--cccccccChhHHhhhhheeeeccCC--Ccccccc----------------cchhhHHHHHHHHH-hhhhcccc Confidence 99997 4444332221111 1111111100 1111111 11222233333321 00111111 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEEcCCCcccceeeEE Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~~~ 158 (457) ..+..+... ..|+++++.+.+..-..|++.....| |.+ .+++++.-.+ ... . T Consensus 60 --------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~-----~~~--~ 111 (320) T protein:vir:97 60 --------KRLSLLTNN-------PSFLRRLVKHALHNKTTYVYKSPTYG-----WLI-TDSMTIEGLR-----ARL--T 111 (320) T ss_pred --------ceeeeeeCC-------HHHHHHHHHHhhcccceEEeeCCccc-----eee-ecceeeeeee-----eeE--E Confidence 111122122 25899999999998888877543322 111 2223222111 000 0 Q ss_pred EEEeeeccccee--EEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC-H Q lcl|Aclame:pro 159 YDIDADGNEVLL--GWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS-E 235 (457) Q Consensus 159 y~~~~~~~~~~~--~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~ 235 (457) +......+.... ..|..-+| ..++++|..+-+.. .-+. .+....-+.+.|.+....++..+.+.. + T Consensus 112 ~~~~D~FN~~V~mtvpfyD~~I-------Ldnpl~gv~tqe~g-kM~g---~a~~~v~kkL~~~~~IKafi~Tdid~GLe 180 (320) T protein:vir:97 112 FTLPDPFNSAVTMTVPFYDVGI-------IDSPLVEVDTEEAN-KMLE---AAYSAVMKKLHNTGAIKAFISSDIDVGLE 180 (320) T ss_pred EecCcccceeEEEEeeeechhh-------hhhhhcccChHHhh-HHHH---HHhhhhhhhccccceeEEEEecccchhHH Confidence 100000011111 11111111 23566787776433 2222 333444556778888888888876543 4 Q ss_pred HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 236 EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 236 e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) |-.++.+..+.++...+..-.++-+++.|.+++++.....-.. ..-....+...+.-|+||..+|-. +..+ T Consensus 181 e~kD~~~~kIk~mq~~A~~~nG~T~i~~~dDI~Qi~pDYS~sn-~~D~~l~~t~alS~y~m~~~IL~G--------sAte 251 (320) T protein:vir:97 181 KMKEESDSKIKAMLATAELLSGYTYIQRGDDVTQMMPDYTTSN-VTDFAAMRTFAASQLSVSDKILDG--------SATD 251 (320) T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecccccccc-hhHHHHHHHHHHhhcCCchhhccc--------cCCc Confidence 4444555555555444443456788899999999975433222 122345568889999999999832 1134 Q ss_pred HHHHHHHHHHHhhHHHHH---HHHHHhhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERI---EAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMT 392 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~i---e~~l~~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~ 392 (457) .+..+|+...+.|+++++ |-.|..++-. ..++.| +.. +|-+.-|.+ T Consensus 252 ~~~Iaf~~~~V~PLL~Q~~~~Ek~Lvy~m~~-----E~FVs~----mtT---------------GG~l~S~~~------- 300 (320) T protein:vir:97 252 GEKVAVMFRFVEPILEQFREYEPSLIYAMRD-----EFFVSF----MTT---------------GGMLNSNRV------- 300 (320) T ss_pred ceeeehhhHhHHHHHHHhhhcCcceeeeecc-----ceeeee----eec---------------Cceeecccc------- Confidence 566789999999999997 4444443311 111111 111 233322221 Q ss_pred CCCCCCCceeeecccccccccccccccccCCCccCC Q lcl|Aclame:pro 393 PLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDP 428 (457) Q Consensus 393 p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 428 (457) ++||.+-- ++..+.+...+. T Consensus 301 ---~~~~~~~~-------------~~~~~~~~~~~~ 320 (320) T protein:vir:97 301 ---DGWGKEKA-------------PNESKGGDVGDV 320 (320) T ss_pred ---cccccccC-------------CccccCCcccCC Confidence 12332110 000000000000 No 220 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=96.71 E-value=0.00039 Score=39.28 Aligned_cols=422 Identities=14% Similarity=0.085 Sum_probs=162.7 Q ss_pred hhhhhcccccccccccccccccc---cchhhhc-ccccccCc-----------ccc-CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 4 WSALFGRGHSPALDAAEGRAWEP---YDPSIYN-LGATASSG-----------ERV-TPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~-----------~~v-~~~~~~~~~~v~~~i~~ia~~ia 67 (457) .+.|||-.-.+........++.+ .+.+... .++..... ..| .++....+|.|..||+-|.+.+. T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 80 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDIVNETI 80 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 33444422211111111111100 0111110 01111000 001 24556679999999999998875 Q ss_pred cC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec----CCceeEEEE Q lcl|Aclame:pro 68 TL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA----GPNIAGLDV 135 (457) Q Consensus 68 ~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~----~g~~~~~~~ 135 (457) -. |+.+-...-+ ..+......+..++.--+....+ ..++..|.+.|..|.-++-+ ..+..++.. T Consensus 81 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~----~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr~ 156 (533) T protein:vir:10 81 CGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRS----YEIFRRWYVDGRLFYHKVIDPDNPQGGLIELRY 156 (533) T ss_pred eecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhh----hHHHhhhhhcceEEEEEEecCCCccccceeeee Confidence 43 2333221110 00001111222222222222223 34456677889988776433 368999999 Q ss_pred eccceeEEEEcCC----Cccc---------ceeeEEEEEeee---cccceeEEeccceEEEeccCCc--cCCccccchhH Q lcl|Aclame:pro 136 LDPTKIHVHMVMV----DGLR---------RKVFEAYDIDAD---GNEVLLGWFTPRDVLHIPGMML--PGDFVGCSPIS 197 (457) Q Consensus 136 l~p~~v~~~~~~~----~~~~---------~~~~~~y~~~~~---~~~~~~~~~~~~evih~~~~~~--~~~~~G~s~~~ 197 (457) |+|..++.++... .+.. ......|-|... ........++.+ .|++-+... .+...=+|-+. T Consensus 157 lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~d-AI~y~hSGl~d~~~~~i~syLh 235 (533) T protein:vir:10 157 IDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAPD-SICYVHSGIMDLNKNMTLSHLH 235 (533) T ss_pred ccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecchh-heeeeeccceeCCCCceeccch Confidence 9999998755432 1111 111111212111 111222345554 444444332 23334467777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccc----cccCcc------ee-c---- Q lcl|Aclame:pro 198 YARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGV----DNAHRV------AL-L---- 261 (457) Q Consensus 198 ~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~----~n~~~~------~v-l---- 261 (457) .+.+.++-..-++...--+--.-+.-+-+..++-. +-...+++..+.+...+..- ...|.+ +- + T Consensus 236 kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyW 315 (533) T protein:vir:10 236 KAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFW 315 (533) T ss_pred HhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhc Confidence 77777777666666555543334444444444322 22222333333333322210 111111 11 1 Q ss_pred ------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch-HHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 262 ------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG-LAEQNIAFTMFSLRPWLER 332 (457) Q Consensus 262 ------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~-~e~~~~~~~~~~l~P~~~~ 332 (457) +.|.+++.|.. +..++ +-..+..+.+.++++||.+-|+.....+...+. +.-.-..| ..-|..+..+ T Consensus 316 LPRReGgrgTEItTLpGgqnLgem---~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF-~KFI~RLR~r 391 (533) T protein:vir:10 316 LPRREGGRGTEITTLPGGQNLGEL---EDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKF-QKFVARLRKR 391 (533) T ss_pred ccccCCCCccceeeccccCCcChH---HHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHH-HHHHHHHHHH Confidence 23456666643 33444 444677899999999999999755433332211 11111122 2224444444 Q ss_pred HHHH----HHhhhcC-----cc--ccccceEEEecc--hhhh--cc---HHHHHHHHHHHH--hCCCcCHHHHHH-HhC- Q lcl|Aclame:pro 333 IEAG----FNRLLFA-----ET--ADRFRFVKFNLD--EIKR--GA---PKERMELWSLGL--QNGIYSIDEVRA-AED- 390 (457) Q Consensus 333 ie~~----l~~~ll~-----~~--~~~~~~~~f~~~--~~~~--~d---~~~~~~~~~~~~--~~g~~T~nE~R~-~~G- 390 (457) +... |..+|+- .. +.-...++|++. .... .+ +..+...+..+- -+-.++.+=+|+ .+. T Consensus 392 Fs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~ 471 (533) T protein:vir:10 392 FSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQ 471 (533) T ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcc Confidence 4444 4444332 12 122234445443 2111 11 123333333321 011223332322 122 Q ss_pred -----------------CCCCCCCCCceeeecccccccccccccccccCCCccCCCCCC-CCCCCCcccCCCCcccccc Q lcl|Aclame:pro 391 -----------------MTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEE-PADDEEPDNAEGDPDEGET 451 (457) Q Consensus 391 -----------------~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 451 (457) -+.++++..+. + ..+.+..++....+.++ ..+.+.|+. .-+.+. T Consensus 472 tDeei~~~~kqI~~E~k~~~~~~p~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 533 (533) T protein:vir:10 472 TDVEMKEIDKQIESEMESGIIADPAAEM----------D---PAMAAGDPDAGGAPAEEVAPEGPDPSD----ERKAEF 533 (533) T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcchh----------h---HHhcCCCCCcCCcccccCCCCCCCcch----hhccCC Confidence 22222221110 0 00000000000000000 000010100 000011 No 221 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=96.37 E-value=0.0007 Score=37.89 Aligned_cols=427 Identities=13% Similarity=0.080 Sum_probs=171.7 Q ss_pred hhhhhhcccccccccccccccc---cccchhhhc-ccccccC-----c------ccc-CHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAEGRAW---EPYDPSIYN-LGATASS-----G------ERV-TPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~-----~------~~v-~~~~~~~~~~v~~~i~~ia~~i 66 (457) +-..|||-.-........+..+ ...+.+... .++...+ + ..| .++....+|.|..||+-|.+.+ T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVnea 80 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDHELITRYREMVLNPECDSAVDDVVNET 80 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeecccccccccccccccchHHHHHHHHHHHhhccchhhHHHHhhcce Confidence 3334444211110000000000 111111110 1111110 0 001 2455667999999999999887 Q ss_pred ccC-----ceEEEEeccCc---eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec----CCceeEEE Q lcl|Aclame:pro 67 ATL-----PLSTYSKRGGT---RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA----GPNIAGLD 134 (457) Q Consensus 67 a~~-----p~~~~~~~~~~---~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~----~g~~~~~~ 134 (457) .-. |+.+-.+.-+. .+......+..++.--+.... -..++..|.+.|..|.-++-+ ..+..++. T Consensus 81 iv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~----~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr 156 (537) T protein:vir:10 81 ICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNR----AYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELR 156 (537) T ss_pred eEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeEEEEEEEEeCCCccccceeee Confidence 543 33332221111 000111122222222222222 344456677889988876543 36899999 Q ss_pred EeccceeEEEEcCCC----cccc-----ee----eEEEEEee---ecccceeEEeccceEEEeccCC--ccCCccccchh Q lcl|Aclame:pro 135 VLDPTKIHVHMVMVD----GLRR-----KV----FEAYDIDA---DGNEVLLGWFTPRDVLHIPGMM--LPGDFVGCSPI 196 (457) Q Consensus 135 ~l~p~~v~~~~~~~~----~~~~-----~~----~~~y~~~~---~~~~~~~~~~~~~evih~~~~~--~~~~~~G~s~~ 196 (457) .|+|..+..++.... +... .+ ...|.|.. .........++. +.|++-+.. ..+..+.+|-+ T Consensus 157 ~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~-dAI~y~hSGl~d~n~~~i~syL 235 (537) T protein:vir:10 157 YVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAP-DSIAYCHSGIQDLNKNMVLSHL 235 (537) T ss_pred eeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccH-hheeeecccceeCCCCeeeeee Confidence 999999976665321 1110 00 00111111 011122234555 444444322 23456788889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccc----cccCcc------ee-c--- Q lcl|Aclame:pro 197 SYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGV----DNAHRV------AL-L--- 261 (457) Q Consensus 197 ~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~----~n~~~~------~v-l--- 261 (457) ..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+..- ...|.+ +- + T Consensus 236 hkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDy 315 (537) T protein:vir:10 236 HKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDF 315 (537) T ss_pred hhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhh Confidence 988888887777777665544444444444444422 22222333333333322210 111111 11 1 Q ss_pred -------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch-HHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 262 -------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG-LAEQNIAFTMFSLRPWLE 331 (457) Q Consensus 262 -------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~-~e~~~~~~~~~~l~P~~~ 331 (457) +.|.+++.|.. +..++ +-..+..+.+.++++||.+-|+.....+...+. +.-.-..| ..-|..+.. T Consensus 316 WLPRReGgrgTEItTLpGgqnlgem---~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF-~KFI~RLR~ 391 (537) T protein:vir:10 316 WLPRREGGRGTEISTLPGGQNLGEL---EDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKF-QKFIARLRK 391 (537) T ss_pred cccccCCCcccceeeccccCCcChH---HHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHH-HHHHHHHHH Confidence 23455666643 33444 444677899999999999999755433332221 11111112 222444444 Q ss_pred HHHHH----HHhhhcC-----cc--ccccceEEEecc--hhhh--cc---HHHHHHHHHHHHh--CCCc----------- Q lcl|Aclame:pro 332 RIEAG----FNRLLFA-----ET--ADRFRFVKFNLD--EIKR--GA---PKERMELWSLGLQ--NGIY----------- 380 (457) Q Consensus 332 ~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~--~~~~--~d---~~~~~~~~~~~~~--~g~~----------- 380 (457) ++... |..+|+- .. +.-...++|++. .... .+ +..+...+..+-. +-.+ T Consensus 392 rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr 471 (537) T protein:vir:10 392 RFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLK 471 (537) T ss_pred HHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhc Confidence 44444 4444332 12 222234455543 2111 11 1233333322210 1112 Q ss_pred -CHHHHHHH-------hCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCcccccc Q lcl|Aclame:pro 381 -SIDEVRAA-------EDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGET 451 (457) Q Consensus 381 -T~nE~R~~-------~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457) |-.|+-++ ..-+.++++..+ ...+..... ..+. .+...++..++.....+.++..|+- T Consensus 472 ~tDeeI~~~~k~I~~E~k~~~~~~p~~~--------~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:10 472 QTESEIKEIDKEIKQEIADGVIMDPQAM--------QAMEMGIGD-EEPV----PEGGEEPQTDPNSAVSPADQKRGEL 537 (537) T ss_pred cCHHHHHHHHHHHHHHhhCCCCCCcccc--------cccccCCCC-cccC----CCCCCCcccCCccCCCCCCccCCCC Confidence 22332211 111222221111 011111100 0001 1111112222222233344444444 No 222 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=95.50 E-value=0.002 Score=35.44 Aligned_cols=389 Identities=9% Similarity=-0.050 Sum_probs=167.9 Q ss_pred Cch--hhhhhccccc--ccccccccccccccchhhh-cccccc-cCccccCHHHHhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 1 MGF--WSALFGRGHS--PALDAAEGRAWEPYDPSIY-NLGATA-SSGERVTPHDALQVSAVFASVRLLSETIATLPLSTY 74 (457) Q Consensus 1 Mg~--~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~ 74 (457) |.+ +.++..+... +....... .+...-.... ...... .......+..-+.+....-+++..+.-+-+-|+... T Consensus 1 l~~~~i~~~i~~~~~~~~r~~~~~~-YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~ 79 (451) T protein:vir:10 1 MELEKIRAIISADAARRQEILQAKS-YYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFD 79 (451) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceee Confidence 111 1111111000 00000000 0000000000 000000 000000011112356667788888888878887654 Q ss_pred EeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------ceeEEEEeccceeEEEEc Q lcl|Aclame:pro 75 SKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP--------NIAGLDVLDPTKIHVHMV 146 (457) Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g--------~~~~~~~l~p~~v~~~~~ 146 (457) ...+.. .......+.. .........+..+.+.+|.+|..+..+.. +...+..++|..+.+..+ T Consensus 80 ~~~~~~-----~~~~~~~~~~----n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vyd 150 (451) T protein:vir:10 80 IDNNKE-----LNEKVTDVLG----NEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYR 150 (451) T ss_pred cCCcHH-----HHHHHHHHhc----cCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEc Confidence 222111 0111111111 23556677788999999999998866531 334466788888877665 Q ss_pred CCC-cccceeeEEEEEeeeccc-------ceeEEeccceEEEeccCC---------------c---------cCCccccc Q lcl|Aclame:pro 147 MVD-GLRRKVFEAYDIDADGNE-------VLLGWFTPRDVLHIPGMM---------------L---------PGDFVGCS 194 (457) Q Consensus 147 ~~~-~~~~~~~~~y~~~~~~~~-------~~~~~~~~~evih~~~~~---------------~---------~~~~~G~s 194 (457) ... +........|........ .....+.++.+.+++... + .+...|.| T Consensus 151 d~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~ 230 (451) T protein:vir:10 151 NGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQS 230 (451) T ss_pred CCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCC Confidence 432 111111112211111000 011223344444432100 0 11235778 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC-CCCCHHHHHHHHHHHHHHhccccccCcceecc-----Ccceee Q lcl|Aclame:pro 195 PISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP-GTMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFS 268 (457) Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~-----~g~~~~ 268 (457) -+..+...++....+..-....+.....|-.++..- ...+.+.. ..+.. .+++.+. .|.++. T Consensus 231 d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~~--------~~~i~~~~~~~~~~~~~~ 298 (451) T protein:vir:10 231 DLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFL----KELKR--------YKTIKTETDSEGDSGGLK 298 (451) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhH----HHHhh--------CCeEEecCcCCccCCcce Confidence 888888888887776666666666666665555432 11222222 22211 1222222 223333 Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH----------HHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 269 KVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN----------IAFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 269 ~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~l~ 338 (457) .+........+.+..+.+.+.|...-++|.. ....-++.|+....-+. ...+..+|.-.++.|...+ T Consensus 299 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~--~~~~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~- 375 (451) T protein:vir:10 299 TMQIEIPTEARKIILEILKKQIYESGQGLQQ--DTENFGNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFL- 375 (451) T ss_pred EEeecCCHHHHHHHHHHHHHHHHHHhCcccc--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh- Confidence 3333333445567788888999999999853 22222333443222111 1122222333222222222 Q ss_pred hhhcCccccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc Q lcl|Aclame:pro 339 RLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPE 418 (457) Q Consensus 339 ~~ll~~~~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~ 418 (457) ... ....+.+.+...+..+..+.++.+.++. |+++..-+.+++++-.-+..+.. .+......+ T Consensus 376 ----~~~--d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~~~e~~---------~~~ee~~~~ 438 (451) T protein:vir:10 376 ----GVT--DYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDVEEAEK---------LYLEEKKIQ 438 (451) T ss_pred ----CCC--CccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHH---------HHHHHHHHH Confidence 211 2234556667778889999999999885 78888778777755321111100 000000000 Q ss_pred cccCCCccCCCCC Q lcl|Aclame:pro 419 PAPAPPAIDPPAE 431 (457) Q Consensus 419 ~~~~~~~~~~~~~ 431 (457) .........+-.+ T Consensus 439 ~~~~~~~~~~~~~ 451 (451) T protein:vir:10 439 ASKVSDDYNNFTE 451 (451) T ss_pred HHHHHhhcCCCCC Confidence 0000000000000 No 223 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=95.49 E-value=0.002 Score=35.42 Aligned_cols=414 Identities=11% Similarity=0.016 Sum_probs=170.1 Q ss_pred Cch-----hhhhhccccc------------cccccccccc--ccccchhhhcccccccC----------c-ccc-CHHHH Q lcl|Aclame:pro 1 MGF-----WSALFGRGHS------------PALDAAEGRA--WEPYDPSIYNLGATASS----------G-ERV-TPHDA 49 (457) Q Consensus 1 Mg~-----~~~l~~~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~-~~v-~~~~~ 49 (457) |.| |..+.+..+. .++....... ...........++...+ . .-+ ..+.. T Consensus 1 m~~~~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~m 80 (521) T protein:vir:10 1 MNPIFLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSL 80 (521) T ss_pred CCcchhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHH Confidence 444 3333221111 0000000000 00000000000000000 0 001 24556 Q ss_pred hccHHHHHHHHHHHHhhccC-----ceEEEEeccCc---eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEE Q lcl|Aclame:pro 50 LQVSAVFASVRLLSETIATL-----PLSTYSKRGGT---RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFL 121 (457) Q Consensus 50 ~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~~---~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~ 121 (457) +.+|.|..||+-|.+.+.-. |+.+-...-+. .+......+..++.--+.... -..++..|.+.|..|. T Consensus 81 a~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~f 156 (521) T protein:vir:10 81 SKYHEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFERE----GKRHFRRWYVDSRIYF 156 (521) T ss_pred hhccchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeeEEE Confidence 67999999999999887533 23332211111 000111122222221222222 3445566788899888 Q ss_pred EEEec----CCceeEEEEeccceeEEEEcCCC----ccc--ceeeEEEEE--------eeecccceeEEeccceEEEecc Q lcl|Aclame:pro 122 AVRWA----GPNIAGLDVLDPTKIHVHMVMVD----GLR--RKVFEAYDI--------DADGNEVLLGWFTPRDVLHIPG 183 (457) Q Consensus 122 ~i~~~----~g~~~~~~~l~p~~v~~~~~~~~----~~~--~~~~~~y~~--------~~~~~~~~~~~~~~~evih~~~ 183 (457) -++-+ ..+..++..|+|..++..+.... +.. ......|.| ......+....++.+.|.|..- T Consensus 157 Hkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~y~hS 236 (521) T protein:vir:10 157 HKMIDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIVYSHS 236 (521) T ss_pred EEEeeCCCccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechhheeeecc Confidence 86432 36899999999999965543321 110 001111222 1122223334567666555542 Q ss_pred -CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc---------- Q lcl|Aclame:pro 184 -MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG---------- 251 (457) Q Consensus 184 -~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---------- 251 (457) .-..+..+.+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. T Consensus 237 GL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGe 316 (521) T protein:vir:10 237 GKVDIDGKTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGK 316 (521) T ss_pred cceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce Confidence 1223457889999999888887777777665544444444444444422 2222233333333322211 Q ss_pred ccccCcceec-----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc-cccccch-HHH Q lcl|Aclame:pro 252 VDNAHRVALL-----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN-STSWGSG-LAE 316 (457) Q Consensus 252 ~~n~~~~~vl-----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~-~~~~~~~-~e~ 316 (457) ..+..+.+-+ +.|.+++.|.. +..++ +-..+..+.+.++++||.+-|+.... .+...++ +.- T Consensus 317 v~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem---~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItR 393 (521) T protein:vir:10 317 VKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEM---DDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITR 393 (521) T ss_pred eccchhhhhhHhhhcccccCCCCccceeeccccCCcChH---HHHHHHHHHHHHHhCCCccccCCCCCceecccccchhH Confidence 1111111111 23456666643 33344 44467789999999999999975421 2222111 111 Q ss_pred HHHHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecc--hhhh-----ccHHHHHHHHHHHHh-- Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLD--EIKR-----GAPKERMELWSLGLQ-- 376 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~--~~~~-----~d~~~~~~~~~~~~~-- 376 (457) .-..| ..-|..+..++... |..+|+- .. +.-...++|++. .... .-+..+...+..+-. T Consensus 394 DEikF-~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~ 472 (521) T protein:vir:10 394 DELQF-TKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAE 472 (521) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCcc Confidence 11112 22244444444444 4444332 12 122234445543 2111 112334444443311 Q ss_pred --CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 377 --NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 377 --~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) +-+++.+=+|+ .+.+.-.+=..-+ .. -..+..++.-.++.++.+.- T Consensus 473 yvGky~s~dyi~k~ILr~tDeeik~~~------------k~------I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 473 VTGKYLSHEYVMKNILRMSDEDIKTER------------EK------IDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred ccccccchHHHHHHHhcCCHhHHHHHH------------HH------HHHhhhCCCCCCCcchhhcC Confidence 12444444443 3444311100000 00 00011111111111111111 No 224 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=95.47 E-value=0.002 Score=35.36 Aligned_cols=433 Identities=12% Similarity=0.061 Sum_probs=161.4 Q ss_pred hhhhhcccc----cccccccccccc-cccchhhhccccccc--Cc--------ccc-CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 4 WSALFGRGH----SPALDAAEGRAW-EPYDPSIYNLGATAS--SG--------ERV-TPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 4 ~~~l~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~--------~~v-~~~~~~~~~~v~~~i~~ia~~ia 67 (457) .+.|||-.- .....+...... .+......++.+... .+ ..| .++....+|.|..||+-|.+.+. T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIVneaI 80 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIVNEFV 80 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhhhhccccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 334444211 111111111000 010000011101000 00 001 23456679999999999998854 Q ss_pred cC-----ceEEEEeccCc---eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec----CCceeEEEE Q lcl|Aclame:pro 68 TL-----PLSTYSKRGGT---RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA----GPNIAGLDV 135 (457) Q Consensus 68 ~~-----p~~~~~~~~~~---~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~----~g~~~~~~~ 135 (457) -. |+.+-...-+- .+......+..++.--+....+ ..++..|.+.|..|.-++-+ ..++.+|.. T Consensus 81 v~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~----~e~fR~WYVDgRi~fHkiid~~~pk~GI~eLr~ 156 (564) T protein:vir:10 81 VNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNA----HEIIRNWYVDGRSHYHKVIDLDNPKKGILELRY 156 (564) T ss_pred EecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhh----hHHHhhhhhcceEEEEEEeeCCChhhhhhhhhh Confidence 22 22222211110 0000111122222222222223 34456677889988876432 356999999 Q ss_pred eccceeEEEEcCCCcc---cce-------------eeEEEEEeeecc--------------cceeEEeccceEEEeccC- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGL---RRK-------------VFEAYDIDADGN--------------EVLLGWFTPRDVLHIPGM- 184 (457) Q Consensus 136 l~p~~v~~~~~~~~~~---~~~-------------~~~~y~~~~~~~--------------~~~~~~~~~~evih~~~~- 184 (457) |+|..++.++...... ... ....|.|..... .+....++.+.|.|..-- T Consensus 157 lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y~hSGL 236 (564) T protein:vir:10 157 IDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQSTSGL 236 (564) T ss_pred hcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeechhhcceecccc Confidence 9999887665222110 000 011222321110 112345666777666431 Q ss_pred CccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccc----cccCcc- Q lcl|Aclame:pro 185 MLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGV----DNAHRV- 258 (457) Q Consensus 185 ~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~----~n~~~~- 258 (457) -..+...=+|-+..+.+.++-..-++...--+--.-+.-+-+..++-. +-...+++..+.+...+..- ...|.+ T Consensus 237 ~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGevr 316 (564) T protein:vir:10 237 MDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGEIR 316 (564) T ss_pred eeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceec Confidence 122334456677777777776666666555443333444444444322 22222333333333322210 011111 Q ss_pred -----ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccc-ccccccch-HHHHH Q lcl|Aclame:pro 259 -----AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT-NSTSWGSG-LAEQN 318 (457) Q Consensus 259 -----~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~-~~~~~~~~-~e~~~ 318 (457) +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+... +.+...++ +.-.- T Consensus 317 ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~---DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDE 393 (564) T protein:vir:10 317 DDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLGELK---DVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDE 393 (564) T ss_pred ccchhhhhHhhhcccccCCCcccceeeccccCCcchHH---HHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHH Confidence 11 1 23456666643 334443 446678999999999999997542 12221111 11111 Q ss_pred HHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecc--hhhh--cc---HHHHHHHHHHHHh--CC Q lcl|Aclame:pro 319 IAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLD--EIKR--GA---PKERMELWSLGLQ--NG 378 (457) Q Consensus 319 ~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~--~~~~--~d---~~~~~~~~~~~~~--~g 378 (457) ..| ..-|..+..++... |..+|+- .. +.-...++|++. .... .+ +..+...+..+-. +- T Consensus 394 iKF-~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGk 472 (564) T protein:vir:10 394 LKF-TKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGK 472 (564) T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 122 22244444444444 4444332 12 122234444443 2111 11 1233333332200 11 Q ss_pred C------------cCHHHHHHH-------h--CC--CCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCC Q lcl|Aclame:pro 379 I------------YSIDEVRAA-------E--DM--TPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) Q Consensus 379 ~------------~T~nE~R~~-------~--G~--~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) . +|-.|+-++ . |+ +|.+...+|-. ..+..+-.+...........+ T Consensus 473 y~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~------------~~~~~~~~p~~~~~~~~~~~~ 540 (564) T protein:vir:10 473 YFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDM------------EKQNQAFAPELQAAQDDLAAE 540 (564) T ss_pred ccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCc------------cCCCCcCCcchhhhccccccc Confidence 1 233333221 1 11 22221122210 000000000000000000000 Q ss_pred CCCc--ccC-CCCccccccccccC Q lcl|Aclame:pro 436 DEEP--DNA-EGDPDEGETEDDDD 456 (457) Q Consensus 436 ~~~~--~~~-~~~~~~~~~~~~~~ 456 (457) .+.. ..+ +..+.....+++.- T Consensus 541 ~~~~~~~~a~~~~~~~~~~~~~~~ 564 (564) T protein:vir:10 541 REIKKLNSAPKPPPSQQSKSQSNK 564 (564) T ss_pred cChhhhccCCCCCCCCCCcCcCCC Confidence 0000 000 00000000011111 No 225 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=94.48 E-value=0.0031 Score=34.32 Aligned_cols=414 Identities=10% Similarity=-0.030 Sum_probs=152.9 Q ss_pred Cc--------------hhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MG--------------FWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg--------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) |. .|+++...... ....-.+-...+.+..+........-.....+ .++...|++.+|..+ T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~-----~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Laa~l 74 (535) T protein:vir:33 1 MADSKRTGLGEDGAKATYDRLTNDRRA-----YETRAENCAQYTIPSLFPKESDNESTDYTTPW-QAVGARGLNNLASKL 74 (535) T ss_pred CChhhhhccChhHHHHHHHHHHHHhhH-----HHHHHHHHHHHhcccccCCCCCcccccccccc-cccHHHHHHHHHHHH Confidence 21 22222111100 00000000011111111100000000001122 344455666666655 Q ss_pred cc-C-c---e-EEEEeccCc-------eeeec--------CcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe Q lcl|Aclame:pro 67 AT-L-P---L-STYSKRGGT-------RKEID--------TPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) Q Consensus 67 a~-~-p---~-~~~~~~~~~-------~~~~~--------~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~ 125 (457) .+ | | | ++...+..- ....+ ...++..+.+-| ++.-+..++.+++.+|++++++.. T Consensus 75 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~sn----f~~~~~~~~~~L~~~G~a~l~~~~ 150 (535) T protein:vir:33 75 MLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNS----YRVTLFECLKQLIVAGNALLYLPE 150 (535) T ss_pred HHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceeEEeec Confidence 32 2 2 2 111100000 00000 011112223322 444556678888999999999877 Q ss_pred cCCceeEEEEeccceeEEEEcCCCcccceee------------------------------EEEEEeee-cccceeEE-- Q lcl|Aclame:pro 126 AGPNIAGLDVLDPTKIHVHMVMVDGLRRKVF------------------------------EAYDIDAD-GNEVLLGW-- 172 (457) Q Consensus 126 ~~g~~~~~~~l~p~~v~~~~~~~~~~~~~~~------------------------------~~y~~~~~-~~~~~~~~-- 172 (457) +.++...+..++..++.+.++..+.+...+. ..|..... ..+..... T Consensus 151 ~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~~~~ 230 (535) T protein:vir:33 151 PEGSYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYLKYE 230 (535) T ss_pred CCCCceeeEEEEcCeeEEeeCCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEEEEE Confidence 6655555556666666655555543211000 00100000 00000000 Q ss_pred ---------------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 173 ---------------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 173 ---------------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) |...-.+..|.....+..||.||.+.+...+.....+.+...........|.+++..+....... T Consensus 231 ~~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~ 310 (535) T protein:vir:33 231 EVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRR 310 (535) T ss_pred EEeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccchhh Confidence 11123344455545567899999999999999999999999999888888887766444333322 Q ss_pred HHHHHHHHHHHhccccccCccee--ccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRVAL--LTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~~v--l~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) .. .+.. +..+ -++++...++...+.-.-..+..+.....|..+|-+.. +... ++...++.-- T Consensus 311 ~~----------~~~~---g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~--~~~~-~~~r~TAtEV 374 (535) T protein:vir:33 311 LT----------KAQT---GDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNS--AVQR-TGERVTAEEI 374 (535) T ss_pred cc----------cCCc---eeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--cccC-CCccccHHHH Confidence 11 1111 1122 23334445554443333344556777888988884442 2111 1222222111 Q ss_pred HHHHHHHHHHHhhHHHHHHHHH-------------HhhhcCccccccceEEEecchhhh-----ccHHHHHHHHHHHHhC Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGF-------------NRLLFAETADRFRFVKFNLDEIKR-----GAPKERMELWSLGLQN 377 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l-------------~~~ll~~~~~~~~~~~f~~~~~~~-----~d~~~~~~~~~~~~~~ 377 (457) ..+..-....|.|....+.++| ...+|++..... ++..+.+.+. .+......++..+-+. T Consensus 375 ~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~--v~~~yis~La~aqr~~~~~~l~~~~~~la~~ 452 (535) T protein:vir:33 375 RYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEA--VEPTISTGLEAIGRGQDLDKLERCISAWAAL 452 (535) T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc--eeEEEecHHHHHHHHHHHHHHHHHHHHHHhh Confidence 1222223334444444444443 223444333222 3333333221 1111122222111110 Q ss_pred C------CcCHHH----HHHHhCCCCCCCCCCceeeecccccccccccc-----cccccC-CCccCCCCCCCCCCCCc-- Q lcl|Aclame:pro 378 G------IYSIDE----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE-----PEPAPA-PPAIDPPAEEPADDEEP-- 439 (457) Q Consensus 378 g------~~T~nE----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~-- 439 (457) + .+..++ +.+.+|.|+.. .+..+-....+..... .+.+.+ ..+.......+.+.... T Consensus 453 ~P~~~d~~id~d~~~~~~a~~~Gvp~~~-----i~~~~ee~~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 527 (535) T protein:vir:33 453 APMQGDPDINLAVIKLRIANAIGIDTSG-----ILLTDEQKQALMMQDAAQTGVENAAAAGGAGVGALATSSPEAMQGAA 527 (535) T ss_pred ChhhhhccCCHHHHHHHHHHHcCCCHhH-----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhcCChhHHHHH Confidence 0 112222 22334444310 0000000000000000 000000 00000000000000000 Q ss_pred ccCCCCccccccccc Q lcl|Aclame:pro 440 DNAEGDPDEGETEDD 454 (457) Q Consensus 440 ~~~~~~~~~~~~~~~ 454 (457) +...=++ + T Consensus 528 ~~~g~~~-------~ 535 (535) T protein:vir:33 528 AKAGLNA-------T 535 (535) T ss_pred HhccCCC-------C Confidence 0000000 0 No 226 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=94.39 E-value=0.0045 Score=33.43 Aligned_cols=407 Identities=12% Similarity=0.029 Sum_probs=179.4 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |+-=.| .+.+..+.. ++-..-...|+..+-.+..+..--.++=.++.+.+-..+....... T Consensus 1 ~~~~~~----------------~~~~~~~~~---~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~ 61 (527) T protein:vir:10 1 MGQDKR----------------QYGSTQQLR---AGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGD 61 (527) T ss_pred CCcccc----------------ccCCCcCcC---CccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccc Confidence 443211 111111111 1111100113332222222211122222222222222111111111 Q ss_pred eeeecCcchhhhccCCCC--------------------------CCCHHHHHHHHHHHHHHcCCeEEEEEecC----Cce Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPG--------------------------GMGRIDILSQTVLSLLLQGNAFLAVRWAG----PNI 130 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~--------------------------~~~~~~f~~~~~~~~l~~G~~~~~i~~~~----g~~ 130 (457) .....++....++...+. ..+.....+.+..+.++.|.+...+..+. |+- T Consensus 62 ~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R 141 (527) T protein:vir:10 62 QRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) T ss_pred cceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCC Confidence 112222222222221111 01112233445566677888888887663 234 Q ss_pred eEEEEeccceeEEEEcCCCcccceee---------------------------------------EEEEEee----eccc Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKVF---------------------------------------EAYDIDA----DGNE 167 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~~---------------------------------------~~y~~~~----~~~~ 167 (457) +.+..++|..+-.+.+.++....... .-|.... .+.. T Consensus 142 ~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d 221 (527) T protein:vir:10 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) T ss_pred ceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeecccccc Confidence 56677776666555443322110000 0000000 0000 Q ss_pred ---------------------ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceE Q lcl|Aclame:pro 168 ---------------------VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAV 226 (457) Q Consensus 168 ---------------------~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~ 226 (457) ...-.+.-=-|+|++...+.+..+|.|-+.-+...++..+....-.....+-+|.|-.+ T Consensus 222 ~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~ 301 (527) T protein:vir:10 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA 301 (527) T ss_pred ccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceee Confidence 00000011136788777777889999999988777777665555555555556777666 Q ss_pred EecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc Q lcl|Aclame:pro 227 VEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN 306 (457) Q Consensus 227 ~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~ 306 (457) ++.-...+ .+ -+... + .-..|.++-++++.++..++..+.-..+......+.+.|+..=++|..-+|.... T Consensus 302 ~tg~~~vd---~~---G~~~~-~--~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~ 372 (527) T protein:vir:10 302 TDSAPPRD---SR---GNMVP-W--TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDA 372 (527) T ss_pred eccccccc---cc---CCcCc-c--ccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccC Confidence 54332221 00 00000 0 0113567778999999999887766678888899999999999999999995543 Q ss_pred ccc-ccchHHHHHHHHHHHHHhhHHHHHHHH-H--------------Hhhh------cCccccccceEEEecchhhhccH Q lcl|Aclame:pro 307 STS-WGSGLAEQNIAFTMFSLRPWLERIEAG-F--------------NRLL------FAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 307 ~~~-~~~~~e~~~~~~~~~~l~P~~~~ie~~-l--------------~~~l------l~~~~~~~~~~~f~~~~~~~~d~ 364 (457) ++. |+.. ++-.+.|++.+.+.. + .+.| .........-+.+.+...+..|. T Consensus 373 s~~~SG~A--------LeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~ 444 (527) T protein:vir:10 373 AVAESGIA--------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNS 444 (527) T ss_pred CcCcHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCH Confidence 332 2221 222344444322211 0 0110 00111122344667778899999 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 365 KERMELWSLGLQNGIYSIDEVRAAE---DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 365 ~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) ++..+...+++++|+++.-=+-+++ |+ +++++.+.--+-.- ...+......+..+-+.......+-++++.++ T Consensus 445 ~avie~v~tL~~aGi~S~~tAv~~L~~~~g--~eD~E~E~~~I~~e--ra~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~ 520 (527) T protein:vir:10 445 EKRFNQLLQLWEAGLIPAKKLTEELSKIMG--FELTEEDFKQATED--KKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHhccC--CCChHHHHHHHHHH--HHHHhHHhhhhcCchhhhhccccCCCCCCccc Confidence 9999999999999999998877776 22 22222221110000 00000111111111111111111111111111 Q ss_pred -CCCCcc Q lcl|Aclame:pro 442 -AEGDPD 447 (457) Q Consensus 442 -~~~~~~ 447 (457) ....+- T Consensus 521 ~~~~~~~ 527 (527) T protein:vir:10 521 ALNGQPL 527 (527) T ss_pred ccCCCCC Confidence 111111 No 227 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=94.37 E-value=0.0046 Score=33.39 Aligned_cols=407 Identities=12% Similarity=0.027 Sum_probs=179.3 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhccCceEEEEeccCc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 80 (457) |+-=.| .+.+..+.. ++-..-...|+..+-.+..+..--.++=.++.+.+-..+....... T Consensus 1 ~~~~~~----------------~~~~~~~~~---~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~ 61 (527) T protein:vir:10 1 MGQDKR----------------QYGSTQQLR---AGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGD 61 (527) T ss_pred CCcccc----------------ccCCCcCcC---CccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccc Confidence 443211 111111111 1111100113332222222211122222222222222111111111 Q ss_pred eeeecCcchhhhccCCCC--------------------------CCCHHHHHHHHHHHHHHcCCeEEEEEecC----Cce Q lcl|Aclame:pro 81 RKEIDTPEWLDFPNAEPG--------------------------GMGRIDILSQTVLSLLLQGNAFLAVRWAG----PNI 130 (457) Q Consensus 81 ~~~~~~~~~~~l~~~pn~--------------------------~~~~~~f~~~~~~~~l~~G~~~~~i~~~~----g~~ 130 (457) .....++....++...+. ..+.....+.+..+.++.|.+...+..+. |+- T Consensus 62 ~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R 141 (527) T protein:vir:10 62 QRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) T ss_pred cceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCC Confidence 112222222222221111 01112233445566677888888887663 234 Q ss_pred eEEEEeccceeEEEEcCCCcccceee---------------------------------------EEEEEee----eccc Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKVF---------------------------------------EAYDIDA----DGNE 167 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~~---------------------------------------~~y~~~~----~~~~ 167 (457) +.+..++|..+-.+.+.++....... .-|.... .+.. T Consensus 142 ~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d 221 (527) T protein:vir:10 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) T ss_pred ceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeecccccc Confidence 56677776666555443322110000 0000000 0000 Q ss_pred ---------------------ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceE Q lcl|Aclame:pro 168 ---------------------VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAV 226 (457) Q Consensus 168 ---------------------~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~ 226 (457) ...-.+.-=-|+|++...+.+..+|.|-+.-+...++..+....-.....+-+|.|-.+ T Consensus 222 ~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~ 301 (527) T protein:vir:10 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA 301 (527) T ss_pred ccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceee Confidence 00000011136788777777889999999988777777665555555555556777666 Q ss_pred EecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc Q lcl|Aclame:pro 227 VEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN 306 (457) Q Consensus 227 ~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~ 306 (457) ++.-...+ .+ -+... + .-..|.++-++++.++..++..+.-..+......+.+.|+..=++|..-+|.... T Consensus 302 ~tg~~~vd---~~---G~~~~-~--~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~ 372 (527) T protein:vir:10 302 TDSAPPRD---SR---GNMVP-W--TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDA 372 (527) T ss_pred eccccccc---cc---CCcCc-c--ccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccC Confidence 54332221 00 00000 0 0113567778999999999887766678888899999999999999999995543 Q ss_pred ccc-ccchHHHHHHHHHHHHHhhHHHHHHHH-H--------------Hhhh------cCccccccceEEEecchhhhccH Q lcl|Aclame:pro 307 STS-WGSGLAEQNIAFTMFSLRPWLERIEAG-F--------------NRLL------FAETADRFRFVKFNLDEIKRGAP 364 (457) Q Consensus 307 ~~~-~~~~~e~~~~~~~~~~l~P~~~~ie~~-l--------------~~~l------l~~~~~~~~~~~f~~~~~~~~d~ 364 (457) ++. |+.. ++-.+.|++.+.+.. + .+.| .........-+.+.+...+..|. T Consensus 373 s~~~SG~A--------LeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~ 444 (527) T protein:vir:10 373 AVAESGIA--------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN 444 (527) T ss_pred CcCcHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCH Confidence 332 2221 222344444322211 0 0110 00111122344667778899999 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 365 KERMELWSLGLQNGIYSIDEVRAAE---DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 365 ~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) ++..+...+++++|+++.-=+-+++ |+ +++++.+.--+-.- ...+......+..+-+.......+-++++.++ T Consensus 445 ~avie~v~tL~~aGiiS~etAv~~L~~~~g--~eD~E~E~~~I~~e--ra~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~ 520 (527) T protein:vir:10 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMG--FELTEEDFRQATED--KKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHhccC--CCchHHHHHHHHHH--HHHHhHHhhhhcCchhhhhccccCCCCCCccc Confidence 9999999999999999998877776 22 22222221110000 00000011111111111111111111111111 Q ss_pred -CCCCcc Q lcl|Aclame:pro 442 -AEGDPD 447 (457) Q Consensus 442 -~~~~~~ 447 (457) ....+- T Consensus 521 ~~~~~~~ 527 (527) T protein:vir:10 521 ALNGQPL 527 (527) T ss_pred ccCCCCC Confidence 111111 No 228 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=94.15 E-value=0.0052 Score=33.09 Aligned_cols=412 Identities=13% Similarity=0.014 Sum_probs=163.4 Q ss_pred Cchhhhhhccccc----------------ccccccccccc----cccchhhhccc----ccc---cCcc-cc-CHHHHhc Q lcl|Aclame:pro 1 MGFWSALFGRGHS----------------PALDAAEGRAW----EPYDPSIYNLG----ATA---SSGE-RV-TPHDALQ 51 (457) Q Consensus 1 Mg~~~~l~~~~~~----------------~~~~~~~~~~~----~~~~~~~~~~~----~~~---~~~~-~v-~~~~~~~ 51 (457) |+|++ ||+...+ .+......... .+......++. +.. .+.. -| +.+.... T Consensus 1 ~~~~~-lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~ 79 (516) T protein:vir:10 1 MKFLD-LFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTN 79 (516) T ss_pred CCchH-hcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhh Confidence 77764 4443111 00000000000 00000111111 000 0000 01 2455667 Q ss_pred cHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEE Q lcl|Aclame:pro 52 VSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV 123 (457) Q Consensus 52 ~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i 123 (457) +|.|..||+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+....+ ..++..|.+.|..|.-+ T Consensus 80 ~pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~----~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 80 NPEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKL----DTLFRRWYIDSRIFFHK 155 (516) T ss_pred ccchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhh----hHHHHhhhhcceEEEEE Confidence 899999999999887533 2333211110 00000111111222222222223 34455677788888774 Q ss_pred -Eec-CCceeEEEEeccceeEEEEcCCCccc------ce--eeEEEE-------Eeee-cccceeEEeccceEEEeccCC Q lcl|Aclame:pro 124 -RWA-GPNIAGLDVLDPTKIHVHMVMVDGLR------RK--VFEAYD-------IDAD-GNEVLLGWFTPRDVLHIPGMM 185 (457) Q Consensus 124 -~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~------~~--~~~~y~-------~~~~-~~~~~~~~~~~~evih~~~~~ 185 (457) +.+ ..+..++..|+|..+..++....... .. .+..|. +.+. .+......++.+ .|++-+.. T Consensus 156 iid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~d-aI~y~hSG 234 (516) T protein:vir:10 156 IMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRS-AIVYAHSG 234 (516) T ss_pred EecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceecchh-heeeeecC Confidence 433 47899999999999987765422110 00 111121 1110 011112333433 34443322 Q ss_pred c--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc----ccccCcc Q lcl|Aclame:pro 186 L--PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG----VDNAHRV 258 (457) Q Consensus 186 ~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~----~~n~~~~ 258 (457) . .+...=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. -.+.|.+ T Consensus 235 l~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev 314 (516) T protein:vir:10 235 LQDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred cccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 2 1222226777777777776666666555443333444444444322 2222233333333322211 0111221 Q ss_pred ------ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccc-chHH--- Q lcl|Aclame:pro 259 ------AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWG-SGLA--- 315 (457) Q Consensus 259 ------~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~-~~~e--- 315 (457) +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-++...+.+..+ ...| T Consensus 315 ~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItR 391 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMD---DVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITR 391 (516) T ss_pred ccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhH Confidence 11 1 23556666643 334444 446678999999999999997655433311 1111 Q ss_pred --HHHHHHHHHHHhhHHHHHHHHHHhhhcC-----ccc--cccceEEEecchhhhcc-------HHHHHHHHHHHH--hC Q lcl|Aclame:pro 316 --EQNIAFTMFSLRPWLERIEAGFNRLLFA-----ETA--DRFRFVKFNLDEIKRGA-------PKERMELWSLGL--QN 377 (457) Q Consensus 316 --~~~~~~~~~~l~P~~~~ie~~l~~~ll~-----~~~--~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~--~~ 377 (457) =....|+..-=.-+...+.+.|..+|+- ..+ .-...++|++..--.-. +..+...+..+- -+ T Consensus 392 DEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvG 471 (516) T protein:vir:10 392 DELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVG 471 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhc Confidence 1122222222222333444455554432 222 22234455543211111 223344333332 13 Q ss_pred CCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 378 GIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 378 g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) .+++.+=+|+ .+.+.-.+=..-++. +. .+..++.-.++. .++.- T Consensus 472 ky~s~~yi~k~ILr~tDeei~~~~k~--------I~----------~E~~~~~~~~p~-~e~~f 516 (516) T protein:vir:10 472 KYVSHDYVMKNILQMTDEQIAQEEKQ--------IE----------KEANVKRFQNPE-NEDDF 516 (516) T ss_pred cccchHHHHHHHhcCCHhHHHHHHHH--------HH----------HhhhCCCCCCCC-ccccC Confidence 4555555544 344432110000000 00 000000000000 00000 No 229 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=93.92 E-value=0.0059 Score=32.79 Aligned_cols=414 Identities=13% Similarity=0.018 Sum_probs=162.9 Q ss_pred Cchhhhhhcccccc------------cccccccccc--c--ccch-hh-hcccccccCccc--------c-CHHHHhccH Q lcl|Aclame:pro 1 MGFWSALFGRGHSP------------ALDAAEGRAW--E--PYDP-SI-YNLGATASSGER--------V-TPHDALQVS 53 (457) Q Consensus 1 Mg~~~~l~~~~~~~------------~~~~~~~~~~--~--~~~~-~~-~~~~~~~~~~~~--------v-~~~~~~~~~ 53 (457) ..||+.||+-.... +......... . ...+ +. +++.+....... + ..+..+.+| T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma~~p 84 (521) T protein:vir:81 5 LKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNH 84 (521) T ss_pred hhhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHhhcc Confidence 34444444421111 1111111000 0 0000 00 001100000000 1 234566799 Q ss_pred HHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe Q lcl|Aclame:pro 54 AVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) Q Consensus 54 ~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~ 125 (457) .|..||+-|.+.+.-. |+.+-.++-+ ..+......+..++.--+.... -..++..|.+.|..|.-++- T Consensus 85 Evd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fhkii 160 (521) T protein:vir:81 85 EVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRR----GQDMFRRWYVDSRIFFHKII 160 (521) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEEEEEEE Confidence 9999999999887533 3333221110 0000011112222211122222 33455667888999988763 Q ss_pred c---CCceeEEEEeccceeEEEEcCCCccc------ceeeEEEEEeee----------cccceeEEeccceEEEeccCCc Q lcl|Aclame:pro 126 A---GPNIAGLDVLDPTKIHVHMVMVDGLR------RKVFEAYDIDAD----------GNEVLLGWFTPRDVLHIPGMML 186 (457) Q Consensus 126 ~---~g~~~~~~~l~p~~v~~~~~~~~~~~------~~~~~~y~~~~~----------~~~~~~~~~~~~evih~~~~~~ 186 (457) + ..+..++..|+|..+...+....... ......|.|... .+......++.+- |++-+... T Consensus 161 d~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dA-I~y~hSGl 239 (521) T protein:vir:81 161 GKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSA-ITYAHSGL 239 (521) T ss_pred cCCccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechhh-eeeeeccc Confidence 2 37899999999999877655432111 001111111110 1112223444444 44433222 Q ss_pred --cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCCHHHHHHHHHHHHHHhcc----------cc Q lcl|Aclame:pro 187 --PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARAREAWRAANSG----------VD 253 (457) Q Consensus 187 --~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~----------~~ 253 (457) .+...=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++- .+-...+++..+.+...+.. .. T Consensus 240 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~ 319 (521) T protein:vir:81 240 MDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLK 319 (521) T ss_pred eeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccccccc Confidence 233344677777777777766666665554333444444444442 22223334444444333322 11 Q ss_pred ccCccee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccc------chH Q lcl|Aclame:pro 254 NAHRVAL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWG------SGL 314 (457) Q Consensus 254 n~~~~~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~------~~~ 314 (457) +..+.+- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+....+..+. +.- T Consensus 320 ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRD 396 (521) T protein:vir:81 320 NQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRD 396 (521) T ss_pred ccccccchhhhhcccccCCCcccceeecccCCCCChHH---HHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHH Confidence 1111111 1 23556666643 334444 446678999999999999996544333221 111 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcC-----ccc--cccceEEEecchhhhcc-------HHHHHHHHHHHHh--CC Q lcl|Aclame:pro 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFA-----ETA--DRFRFVKFNLDEIKRGA-------PKERMELWSLGLQ--NG 378 (457) Q Consensus 315 e~~~~~~~~~~l~P~~~~ie~~l~~~ll~-----~~~--~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~~--~g 378 (457) |=....|+..-=.-+...+.+.|..+|+- +.+ .-...++|++..--.-. +..+...+..+-. +- T Consensus 397 EiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGk 476 (521) T protein:vir:81 397 ELEFSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGK 476 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 11222222222222333334444444432 111 12234445543211111 1233333333211 11 Q ss_pred CcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 379 IYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 379 ~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) .++.+=+|+ .+.+.-.+ +..... .-..+..++.-.++..+.+.- T Consensus 477 y~s~dyi~k~ILr~tDee---------------i~~~~k---~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 477 YFSNQTVMRDILKYTDDQ---------------MDTEKK---QIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred ccchHHHHHHHhccCHHH---------------HHHHHH---HHHHHhhCCCCCCCcccccCC Confidence 223333332 23332110 000000 000000111111111111111 No 230 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=93.46 E-value=0.0075 Score=32.24 Aligned_cols=414 Identities=12% Similarity=0.066 Sum_probs=162.8 Q ss_pred Cchhh-------hhhccccc------------cccccccccc--ccccchhh--hcc----cc-cccC--c--ccc-CHH Q lcl|Aclame:pro 1 MGFWS-------ALFGRGHS------------PALDAAEGRA--WEPYDPSI--YNL----GA-TASS--G--ERV-TPH 47 (457) Q Consensus 1 Mg~~~-------~l~~~~~~------------~~~~~~~~~~--~~~~~~~~--~~~----~~-~~~~--~--~~v-~~~ 47 (457) |.=|+ .|.+..+. .+........ ........ ..+ .+ .... . ..+ ..+ T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYR 80 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHH Confidence 33332 22221111 0000000000 00000000 000 00 0000 0 001 234 Q ss_pred HHhccHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCe Q lcl|Aclame:pro 48 DALQVSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNA 119 (457) Q Consensus 48 ~~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~ 119 (457) ..+.+|.|..||+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+.... -..++..|.+.|.. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi 156 (524) T protein:vir:10 81 NLMNNYEVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLNFQRK----GTDHFQRWYVDSRI 156 (524) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeceE Confidence 5667999999999999887533 2333221111 0000011112222211222222 33445667888998 Q ss_pred EEEEEec----CCceeEEEEeccceeEEEEcCC----Ccccc----eeeEEEEEee--------ecccceeEEeccceEE Q lcl|Aclame:pro 120 FLAVRWA----GPNIAGLDVLDPTKIHVHMVMV----DGLRR----KVFEAYDIDA--------DGNEVLLGWFTPRDVL 179 (457) Q Consensus 120 ~~~i~~~----~g~~~~~~~l~p~~v~~~~~~~----~~~~~----~~~~~y~~~~--------~~~~~~~~~~~~~evi 179 (457) |.-++-+ ..+..++..|+|..++.++... ++... ..+..|.... ..+......++.+.|+ T Consensus 157 ~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIv 236 (524) T protein:vir:10 157 FFHKIINPKKMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVV 236 (524) T ss_pred EEEEEeeCCCccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhhee Confidence 8886432 3689999999999996643322 11110 0111221110 0122334567888888 Q ss_pred EeccC-CccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc------ Q lcl|Aclame:pro 180 HIPGM-MLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG------ 251 (457) Q Consensus 180 h~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~------ 251 (457) |..-. -+.+...=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. T Consensus 237 y~~SGL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa 316 (524) T protein:vir:10 237 YAHSGLLDCCGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDA 316 (524) T ss_pred eeccCcccCCCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEec Confidence 87532 222333456777777777776666666555443334444444444322 2222233333333322211 Q ss_pred ----ccccCcceec-----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch- Q lcl|Aclame:pro 252 ----VDNAHRVALL-----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG- 313 (457) Q Consensus 252 ----~~n~~~~~vl-----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~- 313 (457) ..+..+.+-+ +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+....+..+.+. T Consensus 317 ~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~ 393 (524) T protein:vir:10 317 STGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTMPGATGMSDMD---DVLYFRTALYRALRIPESRIPSESNSGVMFDAG 393 (524) T ss_pred cCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCchhccCCCCcccccccc Confidence 1111111111 23455666643 334443 44667899999999999999644332221111 Q ss_pred HH--HHHHHHHHHHHhhHHHHHHH----HHHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHHHH Q lcl|Aclame:pro 314 LA--EQNIAFTMFSLRPWLERIEA----GFNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELWSL 373 (457) Q Consensus 314 ~e--~~~~~~~~~~l~P~~~~ie~----~l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~~~ 373 (457) .| -.-..|. .-|..+..++.. .|..+|+- +. +.-...++|++..--.-. +..+...+.. T Consensus 394 ~EItRDEiKF~-KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~ 472 (524) T protein:vir:10 394 TAITRDELKFA-KWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTM 472 (524) T ss_pred chhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHH Confidence 11 1111122 224444444444 44444332 12 122234455543211111 1223333332 Q ss_pred HHh--CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 374 GLQ--NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 374 ~~~--~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) +-. +-.++.+=+|+ .+.+.-.+ +..... .-..+..++.-.++.++.+.- T Consensus 473 ~dpyvGky~s~~yi~k~ILr~tDee---------------i~~~~k---~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 473 AEPFIGKYISHQTAMKDFLQMTDEE---------------INQEAK---QIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred hhhhhcccchhHHHHHHHhccCHHH---------------HHHHHH---HHHHHhhcCCCCCCChhhhcC Confidence 211 11223333332 23332110 000000 000000111111111111111 No 231 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=93.45 E-value=0.0075 Score=32.22 Aligned_cols=411 Identities=13% Similarity=0.012 Sum_probs=167.3 Q ss_pred Cchhhhhhccccc----------------cccccccccc--c--cccchhhhccccccc--Cccc------c-CHHHHhc Q lcl|Aclame:pro 1 MGFWSALFGRGHS----------------PALDAAEGRA--W--EPYDPSIYNLGATAS--SGER------V-TPHDALQ 51 (457) Q Consensus 1 Mg~~~~l~~~~~~----------------~~~~~~~~~~--~--~~~~~~~~~~~~~~~--~~~~------v-~~~~~~~ 51 (457) |+|++ ||+...+ .+........ . ....+.+.++.+... .+.. + ..+..+. T Consensus 1 ~~~~~-lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~ 79 (516) T protein:vir:10 1 MKFLD-LFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLIN 79 (516) T ss_pred CCchH-hcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhh Confidence 77765 4443111 0000000000 0 000111111110000 0000 1 2345667 Q ss_pred cHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEE Q lcl|Aclame:pro 52 VSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV 123 (457) Q Consensus 52 ~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i 123 (457) +|.|..||+-|.+.+.-. |+.+-.+.-+ ..+......+..++.--+....+ ..++..|.+.|..|.-+ T Consensus 80 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~----~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 80 NPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKL----DTLFRRWYVDSRIFFHK 155 (516) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhh----hHHHhhhhhcceEEEEE Confidence 999999999999887533 3333221111 00000111122222222222223 34455677788888774 Q ss_pred -Eec-CCceeEEEEeccceeEEEEcCCCccc------ce--eeEEEE-------Eeee-cccceeEEeccceEEEec--c Q lcl|Aclame:pro 124 -RWA-GPNIAGLDVLDPTKIHVHMVMVDGLR------RK--VFEAYD-------IDAD-GNEVLLGWFTPRDVLHIP--G 183 (457) Q Consensus 124 -~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~------~~--~~~~y~-------~~~~-~~~~~~~~~~~~evih~~--~ 183 (457) +.+ ..+..++..|+|..+..++....... .. .+..|. +.+. .+......++.+-|.|.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 443 47899999999999987665421110 00 111111 1110 011122345555555443 2 Q ss_pred CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc----ccccCcc Q lcl|Aclame:pro 184 MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG----VDNAHRV 258 (457) Q Consensus 184 ~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~----~~n~~~~ 258 (457) .+..++.+ +|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. -.+.|.+ T Consensus 236 ~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev 314 (516) T protein:vir:10 236 MDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred eeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 23233333 7888888887777766666655543334444444444422 2222233333333322211 0111221 Q ss_pred ------ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH- Q lcl|Aclame:pro 259 ------AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN- 318 (457) Q Consensus 259 ------~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~- 318 (457) +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+...+.+..++...+-. T Consensus 315 ~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItR 391 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITR 391 (516) T ss_pred ccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhH Confidence 11 1 23455666643 334444 4466789999999999999976554333111111111 Q ss_pred --HHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHHHHHH--h Q lcl|Aclame:pro 319 --IAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELWSLGL--Q 376 (457) Q Consensus 319 --~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~--~ 376 (457) ..| ..-|..+..++... |..+|+- +. +.-...++|++..--.-. +..+...+..+- - T Consensus 392 DEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyv 470 (516) T protein:vir:10 392 DELDF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYV 470 (516) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhh Confidence 112 22244444444444 4444332 12 122234455543211111 223344333332 1 Q ss_pred CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccC Q lcl|Aclame:pro 377 NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNA 442 (457) Q Consensus 377 ~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (457) +.+++.+=+|+ .+.+.-.+=..-++. +. .+..++.-..+ +.+ ++- T Consensus 471 Gky~s~~yi~k~ILr~tDeei~~e~k~--------I~----------~E~~~~~~~~p-~~~--~~f 516 (516) T protein:vir:10 471 GKYVSHDYVMKNILQMTEEQIAQEEKQ--------IE----------QEAGIKRFQNP-ENE--DDF 516 (516) T ss_pred ccccchHHHHHHHhcCCHhhHHHHHHH--------HH----------HhhhCCCCCCC-Ccc--ccC Confidence 34555555544 344432110000000 00 00000000000 000 111 No 232 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=93.45 E-value=0.0075 Score=32.22 Aligned_cols=411 Identities=13% Similarity=0.012 Sum_probs=167.3 Q ss_pred Cchhhhhhccccc----------------cccccccccc--c--cccchhhhccccccc--Cccc------c-CHHHHhc Q lcl|Aclame:pro 1 MGFWSALFGRGHS----------------PALDAAEGRA--W--EPYDPSIYNLGATAS--SGER------V-TPHDALQ 51 (457) Q Consensus 1 Mg~~~~l~~~~~~----------------~~~~~~~~~~--~--~~~~~~~~~~~~~~~--~~~~------v-~~~~~~~ 51 (457) |+|++ ||+...+ .+........ . ....+.+.++.+... .+.. + ..+..+. T Consensus 1 ~~~~~-lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~ 79 (516) T protein:vir:10 1 MKFLD-LFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLIN 79 (516) T ss_pred CCchH-hcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhh Confidence 77765 4443111 0000000000 0 000111111110000 0000 1 2345667 Q ss_pred cHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEE Q lcl|Aclame:pro 52 VSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV 123 (457) Q Consensus 52 ~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i 123 (457) +|.|..||+-|.+.+.-. |+.+-.+.-+ ..+......+..++.--+....+ ..++..|.+.|..|.-+ T Consensus 80 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~----~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 80 NPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKL----DTLFRRWYVDSRIFFHK 155 (516) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhh----hHHHhhhhhcceEEEEE Confidence 999999999999887533 3333221111 00000111122222222222223 34455677788888774 Q ss_pred -Eec-CCceeEEEEeccceeEEEEcCCCccc------ce--eeEEEE-------Eeee-cccceeEEeccceEEEec--c Q lcl|Aclame:pro 124 -RWA-GPNIAGLDVLDPTKIHVHMVMVDGLR------RK--VFEAYD-------IDAD-GNEVLLGWFTPRDVLHIP--G 183 (457) Q Consensus 124 -~~~-~g~~~~~~~l~p~~v~~~~~~~~~~~------~~--~~~~y~-------~~~~-~~~~~~~~~~~~evih~~--~ 183 (457) +.+ ..+..++..|+|..+..++....... .. .+..|. +.+. .+......++.+-|.|.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 443 47899999999999987665421110 00 111111 1110 011122345555555443 2 Q ss_pred CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc----ccccCcc Q lcl|Aclame:pro 184 MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG----VDNAHRV 258 (457) Q Consensus 184 ~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~----~~n~~~~ 258 (457) .+..++.+ +|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. -.+.|.+ T Consensus 236 ~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev 314 (516) T protein:vir:10 236 MDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred eeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 23233333 7888888887777766666655543334444444444422 2222233333333322211 0111221 Q ss_pred ------ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHH- Q lcl|Aclame:pro 259 ------AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN- 318 (457) Q Consensus 259 ------~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~- 318 (457) +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+...+.+..++...+-. T Consensus 315 ~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItR 391 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITR 391 (516) T ss_pred ccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhH Confidence 11 1 23455666643 334444 4466789999999999999976554333111111111 Q ss_pred --HHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHHHHHH--h Q lcl|Aclame:pro 319 --IAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELWSLGL--Q 376 (457) Q Consensus 319 --~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~--~ 376 (457) ..| ..-|..+..++... |..+|+- +. +.-...++|++..--.-. +..+...+..+- - T Consensus 392 DEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyv 470 (516) T protein:vir:10 392 DELDF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYV 470 (516) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhh Confidence 112 22244444444444 4444332 12 122234455543211111 223344333332 1 Q ss_pred CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccC Q lcl|Aclame:pro 377 NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNA 442 (457) Q Consensus 377 ~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (457) +.+++.+=+|+ .+.+.-.+=..-++. +. .+..++.-..+ +.+ ++- T Consensus 471 Gky~s~~yi~k~ILr~tDeei~~e~k~--------I~----------~E~~~~~~~~p-~~~--~~f 516 (516) T protein:vir:10 471 GKYVSHDYVMKNILQMTEEQIAQEEKQ--------IE----------QEAGIKRFQNP-ENE--DDF 516 (516) T ss_pred ccccchHHHHHHHhcCCHhhHHHHHHH--------HH----------HhhhCCCCCCC-Ccc--ccC Confidence 34555555544 344432110000000 00 00000000000 000 111 No 233 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=93.30 E-value=0.008 Score=32.07 Aligned_cols=414 Identities=12% Similarity=0.017 Sum_probs=163.1 Q ss_pred Cchhhhh--hccccc----------------cccccccccc--ccccchhh--hcccccccCccc---------c-CHHH Q lcl|Aclame:pro 1 MGFWSAL--FGRGHS----------------PALDAAEGRA--WEPYDPSI--YNLGATASSGER---------V-TPHD 48 (457) Q Consensus 1 Mg~~~~l--~~~~~~----------------~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~---------v-~~~~ 48 (457) |||++.| |+...+ .+........ .......+ .++.+....+.. + ..+. T Consensus 4 ~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ 83 (524) T protein:vir:98 4 LGFGNVLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRG 83 (524) T ss_pred cchhhHHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHHH Confidence 4555422 221110 0000000000 00000011 111111111100 1 2345 Q ss_pred HhccHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeE Q lcl|Aclame:pro 49 ALQVSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAF 120 (457) Q Consensus 49 ~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~ 120 (457) ...+|.|..||+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+.... -..++..|.+.|..| T Consensus 84 ma~~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~ 159 (524) T protein:vir:98 84 IMSYPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNM----GARLFRDWYVDSRIY 159 (524) T ss_pred HhhccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceeE Confidence 667999999999999887422 2333221111 0000011112222211222222 334556678889999 Q ss_pred EEEEec---CCceeEEEEeccceeEEEEcC-----CCccc--ceeeEEEEEee--ec--------ccceeEEeccceEEE Q lcl|Aclame:pro 121 LAVRWA---GPNIAGLDVLDPTKIHVHMVM-----VDGLR--RKVFEAYDIDA--DG--------NEVLLGWFTPRDVLH 180 (457) Q Consensus 121 ~~i~~~---~g~~~~~~~l~p~~v~~~~~~-----~~~~~--~~~~~~y~~~~--~~--------~~~~~~~~~~~evih 180 (457) .-++-+ ..+..++..|+|..++.++.. +++.. ......|.|.. .. .......++.+.|+| T Consensus 160 fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIvy 239 (524) T protein:vir:98 160 FHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIVY 239 (524) T ss_pred EEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhheee Confidence 887632 256999999999999766522 11211 11111122211 00 111224577788888 Q ss_pred eccCC-ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCCHHHHHHHHHHHHHHhc-------- Q lcl|Aclame:pro 181 IPGMM-LPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARAREAWRAANS-------- 250 (457) Q Consensus 181 ~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~-------- 250 (457) ..-.- +.+... +|-+..+.+.++-..-++.+.--+--.-+.-+-+..++- .+-...+++..+.+...+. T Consensus 240 ~hSGL~d~~~~i-isyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~ 318 (524) T protein:vir:98 240 AHSGLEDCSNNI-IGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDAR 318 (524) T ss_pred eccCcccCCCCe-eeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecc Confidence 65321 122222 477777777777666666655544333444444444442 2223333444444433332 Q ss_pred --cccccCccee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccc-ccccccc-- Q lcl|Aclame:pro 251 --GVDNAHRVAL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT-NSTSWGS-- 312 (457) Q Consensus 251 --~~~n~~~~~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~-~~~~~~~-- 312 (457) ...+..+.+- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+... +.+...+ T Consensus 319 TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqnlgem~---DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~E 395 (524) T protein:vir:98 319 TGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQNFSDMD---DIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGE 395 (524) T ss_pred CceeeccccccchhhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCceeccCCCCccccccccc Confidence 1111112111 1 23556666643 334444 446678999999999999996432 2222111 Q ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC-----ccc--cccceEEEecchhhhcc-------HHHHHHHHHHHHh Q lcl|Aclame:pro 313 --GLAEQNIAFTMFSLRPWLERIEAGFNRLLFA-----ETA--DRFRFVKFNLDEIKRGA-------PKERMELWSLGLQ 376 (457) Q Consensus 313 --~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~-----~~~--~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~~ 376 (457) .-|=....|+..-=.-+...+.+.|..+|+- +.+ .-...++|++..--.-. +..+...+..+-. T Consensus 396 ItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dp 475 (524) T protein:vir:98 396 ITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEG 475 (524) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhcc Confidence 1111222222222222333334444444432 111 12234445543211111 1233333333211 Q ss_pred --CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 377 --NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 377 --~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) +-+++.+=+|+ .+.+...+ +.... ..-..+..++.-.++..+.+.- T Consensus 476 yvGky~s~dyi~k~ILr~tDee---------------i~~~~---k~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 476 VVGKYVSHKYIMKEILRMSDED---------------IDEQA---KLIEEESKEERFKNPEAEEENF 524 (524) T ss_pred ccccccchHHHHHHHhccCHHH---------------HHHHH---HHHHHHHhCCCCcCCccccccC Confidence 12344433433 23332110 00000 0000000111111111111111 No 234 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=93.26 E-value=0.0082 Score=32.02 Aligned_cols=439 Identities=13% Similarity=0.071 Sum_probs=162.5 Q ss_pred Cchhh----hhhcccccccccccccccccccchhhhcccccccC--ccc------c-CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGFWS----ALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASS--GER------V-TPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------v-~~~~~~~~~~v~~~i~~ia~~ia 67 (457) |||.= ++..+...++........ ... ....+.+.... +.. | .++....+|.|..||+-|.+.+. T Consensus 5 fgf~~~~~~~~~~~~~s~~~p~~ddg~-~~~--~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 81 (558) T protein:vir:10 5 FGFSIEETQKKSTSIISPVPKNNEDGV-DNF--ISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAIEDVVNEAI 81 (558) T ss_pred hcchhhhhhhhccCCccccCCCccccc-cce--eccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 44431 111111111111111000 000 00000000000 000 1 23456679999999999998875 Q ss_pred cC-----ceEEEEeccCc---eeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec----CCceeEEEE Q lcl|Aclame:pro 68 TL-----PLSTYSKRGGT---RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA----GPNIAGLDV 135 (457) Q Consensus 68 ~~-----p~~~~~~~~~~---~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~----~g~~~~~~~ 135 (457) -. |+.+-...-+. .+......+..++.--+.... -..++..|.+.|..|.-++-+ ..+..++.. T Consensus 82 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~----~~e~fR~WYVDgRiyfHKiid~k~pk~GI~ELr~ 157 (558) T protein:vir:10 82 VSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKK----SHEIFRNWYVDGRVFYLKVIDTKNPQEGIQDLRY 157 (558) T ss_pred EecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeEEEEEEEEeCCCccccceeeee Confidence 33 23332211111 011111122222222222222 334556677889988876543 368999999 Q ss_pred eccceeEEEEcCCCc---------------ccc--eeeEEEEEeee--c--------ccceeEEeccceEEEeccCCc-- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDG---------------LRR--KVFEAYDIDAD--G--------NEVLLGWFTPRDVLHIPGMML-- 186 (457) Q Consensus 136 l~p~~v~~~~~~~~~---------------~~~--~~~~~y~~~~~--~--------~~~~~~~~~~~evih~~~~~~-- 186 (457) |+|..++.++..... ... .+..+|.|... . +.+....++. +.|++-+... T Consensus 158 lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~-dAI~y~hSGL~d 236 (558) T protein:vir:10 158 IDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAK-DSITMCTSGLVD 236 (558) T ss_pred eCcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceeech-hheeeeccccee Confidence 999999766653111 100 11112222211 1 1112233333 3344433221 Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhccc----cccCcc--- Q lcl|Aclame:pro 187 PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGV----DNAHRV--- 258 (457) Q Consensus 187 ~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~----~n~~~~--- 258 (457) .+.-.=+|-+..+.+.++-..-++...--+--.-+.-+-+..++-. +-...+++..+.+...+..- ...|.+ T Consensus 237 ~~~~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~dd 316 (558) T protein:vir:10 237 RNKNRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVRDD 316 (558) T ss_pred cCCCeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceeccc Confidence 1233446777777777776666666555443333444444444322 22222333333333222210 011111 Q ss_pred ---ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch-HHHHHHHH Q lcl|Aclame:pro 259 ---AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG-LAEQNIAF 321 (457) Q Consensus 259 ---~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~-~e~~~~~~ 321 (457) +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+.....+...+. +.-.-..| T Consensus 317 rk~msMlEDyWLpRReGgrgTEItTLpGgqnLgem~---DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF 393 (558) T protein:vir:10 317 RKFMSMMEDFWLPRREGGRGTEITTLPGGQNLGELS---DVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKF 393 (558) T ss_pred chhhhhHhhhcccccCCCCccceeeccccCCcchHH---HHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHH Confidence 11 1 23456666643 334443 44677899999999999999765433332221 11111112 Q ss_pred HHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecc--hhhh--cc---HHHHHHHHHHHHh--CCCcC Q lcl|Aclame:pro 322 TMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLD--EIKR--GA---PKERMELWSLGLQ--NGIYS 381 (457) Q Consensus 322 ~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~--~~~~--~d---~~~~~~~~~~~~~--~g~~T 381 (457) ..-|..+..++... |..+|+- .. +.-...++|++. .... .+ +..+...+..+-. +-.++ T Consensus 394 -~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S 472 (558) T protein:vir:10 394 -AKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYS 472 (558) T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 22244444444444 4444332 12 222234445443 2111 11 1233333333211 11223 Q ss_pred HHHHHH-HhCCCC---------CCCCCCceeee-cccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 382 IDEVRA-AEDMTP---------LPDGLGEKYRV-PLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 382 ~nE~R~-~~G~~p---------~~~~~gd~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) .+=+|+ .+.+.- +..+..+-.+. |....++... +- +...+......+..+...+.++..++.. T Consensus 473 ~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (558) T protein:vir:10 473 TEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGE----PL--PQEGDPAMEGMGEQPVDPDLEAQAQAVD 546 (558) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhcc----cc--CccCCchhccCCCCCcccccccchhhhh Confidence 322322 122210 00000111111 1111111000 00 0000111111111111111111111111 Q ss_pred cc---cccCC Q lcl|Aclame:pro 451 TE---DDDDA 457 (457) Q Consensus 451 ~~---~~~~~ 457 (457) .. +-+-+ T Consensus 547 ~~~~~~~~~~ 556 (558) T protein:vir:10 547 AQYSKDTKKA 556 (558) T ss_pred hhhhhhhhhh Confidence 11 11111 No 235 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=93.00 E-value=0.0092 Score=31.76 Aligned_cols=422 Identities=11% Similarity=-0.022 Sum_probs=153.6 Q ss_pred Cchhhhhhccccccc-------ccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc-cC--- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPA-------LDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TL--- 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~--- 69 (457) |.--..+-.+..+.. .......-.+-...+.+..+........-.....+ .++...|++.+|..+. .| T Consensus 1 ~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Las~l~~~ltP~ 79 (522) T protein:vir:94 1 MAEREGFAAEGAKAVYDRLKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPW-QAVGARCLNNLAAKLMLALFPQ 79 (522) T ss_pred CcccchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccc-cccHHHHHHHHHHHHHhhcCCC Confidence 544322111000000 00000000001111111111111100000111223 3444456666665553 33 Q ss_pred -ceEEEEeccCcee-----eecCcchhhhccC-------CCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CceeEEEE Q lcl|Aclame:pro 70 -PLSTYSKRGGTRK-----EIDTPEWLDFPNA-------EPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PNIAGLDV 135 (457) Q Consensus 70 -p~~~~~~~~~~~~-----~~~~~~~~~l~~~-------pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~~~~~~~ 135 (457) ||--..-.+.... .........+|.. --..-+++.-+..++.++..+|++++++..+. +....+.. T Consensus 80 ~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~ 159 (522) T protein:vir:94 80 SPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRM 159 (522) T ss_pred CcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEE Confidence 3311111110000 0011111111111 00112244445667888889999999987653 55444555 Q ss_pred eccceeEEEEcCCCccccee----------------------------eEEEEEeeecccceeE---------------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKV----------------------------FEAYDIDADGNEVLLG---------------- 171 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~----------------------------~~~y~~~~~~~~~~~~---------------- 171 (457) +|..++.+.++..+.+...+ ...|............ T Consensus 160 ~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~ 239 (522) T protein:vir:94 160 YRLVSYVVQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSY 239 (522) T ss_pred EEcceEEEeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCC Confidence 55566655555544331110 1111110000000000 Q ss_pred EeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 172 WFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSG 251 (457) Q Consensus 172 ~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 251 (457) .|...-.+..|.....+..||.||.+.+...+.....+.+...........|.+++..+......... .+ T Consensus 240 ~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~~~----------~~ 309 (522) T protein:vir:94 240 PLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPNGITQPRRLN----------KA 309 (522) T ss_pred ccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccchhee----------cc Confidence 01112234444444556789999999999999999999999999999988888777654444433221 11 Q ss_pred ccccCcceec--cCcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhh Q lcl|Aclame:pro 252 VDNAHRVALL--TEGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRP 328 (457) Q Consensus 252 ~~n~~~~~vl--~~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P 328 (457) .+ +.++- ++++...++... .+.+ ..+..+.....|..+|-+.. ++.......+. .--..+..-....|.| T Consensus 310 -~~--g~~v~g~~~~v~~~~~~~~-~~~~~~~~~i~~~~~rI~~af~~~~--~~~~~~~r~TA-tEV~~r~~E~~~~LG~ 382 (522) T protein:vir:94 310 -AT--GEFVAGRVEDINFLQLTKG-QDFTIAKSVADAIEQRLGWAFLLNS--AVQRNAERVTA-EEIRYVAGELEATLGG 382 (522) T ss_pred -CC--ceeecCCcccceeeecccc-cchhHHHHHHHHHHHHHHHHHhhhh--hccCCCccccH-HHHHHHHHHHHHHHhH Confidence 11 11222 223344444432 2332 34556777788999996552 22221222222 1112222223444555 Q ss_pred HHHHHHHHHH-------------hhhcCccccccceEEEecchhhh-c----cHHHHHHHHHHHHhCC------CcCHHH Q lcl|Aclame:pro 329 WLERIEAGFN-------------RLLFAETADRFRFVKFNLDEIKR-G----APKERMELWSLGLQNG------IYSIDE 384 (457) Q Consensus 329 ~~~~ie~~l~-------------~~ll~~~~~~~~~~~f~~~~~~~-~----d~~~~~~~~~~~~~~g------~~T~nE 384 (457) ....+.++|- ..+|++.... .++.++.+.+. . +......++..+-+.+ -+..++ T Consensus 383 v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~--~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~ 460 (522) T protein:vir:94 383 VYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKE--AVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPT 460 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc--cEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHH Confidence 5555555442 2334433322 23444433221 1 1111111111111100 011222 Q ss_pred ----HHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 385 ----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 385 ----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) +.+.+|.+|.. .+..+.-...+-.....+......+........... . .+..++--.| T Consensus 461 ~~~~~a~~~Gv~~~~-----ivr~~ee~~~~~~q~~~~~~~~~~~~~~~~~~~a~~-----~-----~~~~~~~~~~ 522 (522) T protein:vir:94 461 LKLRLLNALGIDTAG-----LLLTQDEKIQRMAEQSSQQAVVQGASAAGANMGAAV-----G-----QGAGEDMAQA 522 (522) T ss_pred HHHHHHHHcCCChhh-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----h-----cccchhhhcC Confidence 22334443210 010000000000000000000000000000000000 0 0000000001 No 236 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=92.98 E-value=0.0092 Score=31.73 Aligned_cols=411 Identities=11% Similarity=0.028 Sum_probs=168.1 Q ss_pred Cchhhhhhcc---------cccccccccccccc----cccchhhhcc-cccc--cCc-----ccc-CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGR---------GHSPALDAAEGRAW----EPYDPSIYNL-GATA--SSG-----ERV-TPHDALQVSAVFAS 58 (457) Q Consensus 1 Mg~~~~l~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~--~~~-----~~v-~~~~~~~~~~v~~~ 58 (457) |.+|.+-=-+ ....+......... +...+...+. .+.. .++ ..| ..+....+|.|..| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 80 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDA 80 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchhhH Confidence 6666432100 00111110000000 0001111110 0000 000 111 24556679999999 Q ss_pred HHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCc Q lcl|Aclame:pro 59 VRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPN 129 (457) Q Consensus 59 i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~ 129 (457) |+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+.... -..++..|.+.|..|.-++-+ ..+ T Consensus 81 v~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fHkiid~k~G 156 (511) T protein:vir:56 81 IQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKH----GYKWFRKWYVDSRIYFHKILDKDNN 156 (511) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEEEEEEeccccc Confidence 99999887533 3333221111 0000011112222221222222 334456677889988876544 578 Q ss_pred eeEEEEeccceeEEEEcCCCcc------cceeeEEEEEeee---c--------ccceeEEeccceEEEeccC---CccCC Q lcl|Aclame:pro 130 IAGLDVLDPTKIHVHMVMVDGL------RRKVFEAYDIDAD---G--------NEVLLGWFTPRDVLHIPGM---MLPGD 189 (457) Q Consensus 130 ~~~~~~l~p~~v~~~~~~~~~~------~~~~~~~y~~~~~---~--------~~~~~~~~~~~evih~~~~---~~~~~ 189 (457) ..+|..|+|..++.++...... .......|.|... . .......++.+.|.|...- .+.+. T Consensus 157 I~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~~ 236 (511) T protein:vir:56 157 IIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCADD 236 (511) T ss_pred eeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCCC Confidence 9999999999887654432211 0011112222110 0 0123356888899665432 23456 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc----------ccccCcc Q lcl|Aclame:pro 190 FVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG----------VDNAHRV 258 (457) Q Consensus 190 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~----------~~n~~~~ 258 (457) .+.+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. ..+..+. T Consensus 237 g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~ 316 (511) T protein:vir:56 237 PYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNA 316 (511) T ss_pred CeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhh Confidence 6789999999988887777777665544444444444444422 2222233333333322211 1111111 Q ss_pred eec-----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc-cccc-cchHH--HHHHHH Q lcl|Aclame:pro 259 ALL-----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN-STSW-GSGLA--EQNIAF 321 (457) Q Consensus 259 ~vl-----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~-~~~~-~~~~e--~~~~~~ 321 (457) +-+ +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|+.... ++.+ +...| -.-..| T Consensus 317 msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF 393 (511) T protein:vir:56 317 MSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIE---DVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKF 393 (511) T ss_pred hhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHH Confidence 111 23456666643 334444 4466789999999999999974421 1222 11111 111122 Q ss_pred HHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHHHHHHh--CCCcC Q lcl|Aclame:pro 322 TMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELWSLGLQ--NGIYS 381 (457) Q Consensus 322 ~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~~--~g~~T 381 (457) . .-|..+..++... |..+|+- .. +.-...++|++..--.-. +..+...+..+-. +-.++ T Consensus 394 ~-KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S 472 (511) T protein:vir:56 394 T-KFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYS 472 (511) T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccc Confidence 2 2244444444444 4444332 12 122234455543211111 1223333322210 11224 Q ss_pred HHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCC Q lcl|Aclame:pro 382 IDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDE 437 (457) Q Consensus 382 ~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (457) .+=+|+ .+.+...+=..-++. + ..+..++.-.++.++= T Consensus 473 ~~yi~k~ILr~tDeei~~~~k~--------I----------~~E~k~~~~~~~e~~f 511 (511) T protein:vir:56 473 HKYIQKNILRLSDDQITAMQSE--------I----------DEEETNPRFQQDDQGF 511 (511) T ss_pred hHHHHHHHhccCHHHHHHHHHH--------H----------HHhhcCCCCCCcccCC Confidence 333332 233321100000000 0 0000000000000000 No 237 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=92.92 E-value=0.0095 Score=31.68 Aligned_cols=406 Identities=12% Similarity=-0.022 Sum_probs=148.1 Q ss_pred Cch-hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc-cC-----ce-E Q lcl|Aclame:pro 1 MGF-WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TL-----PL-S 72 (457) Q Consensus 1 Mg~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~-----p~-~ 72 (457) |.- +...+.+....+ ......-.+-...+.+..+........-.....+ .++...|++.+|..+. .+ || + T Consensus 1 mk~~a~~r~~~l~~~R-~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~-dstg~~a~~~Laa~l~~~ltpp~~~WF~ 78 (542) T protein:vir:78 1 MKGLAQARYSAMRADR-EDFLDMARRCAALTLPYLLTEDGHASGGRLQQPY-QSLGSKGVNALSSKLMLSLFPIQTSFFK 78 (542) T ss_pred ChhHHHHHHHHHHHHh-hHHHHHHHHHHHHhccccCCCCCCcccccccccc-cchHHHHHHHHHHHHHHhhcCCCCcccc Confidence 432 221111111100 0000000001111111111111100000011222 3334456666665553 22 33 2 Q ss_pred EEEeccC-----c-ee--ee-c-------CcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEe Q lcl|Aclame:pro 73 TYSKRGG-----T-RK--EI-D-------TPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVL 136 (457) Q Consensus 73 ~~~~~~~-----~-~~--~~-~-------~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l 136 (457) +...... . .. .. . .......+.+- +++.-+-.++.++..+|++++++..+. ...+|| T Consensus 79 l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~---~~~~pl 151 (542) T protein:vir:78 79 LQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAES----SDRVQLTAAMKHLIVTGNVLVFAGKKT---LKVYPL 151 (542) T ss_pred ccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCeEEEEecCCC---ceEEec Confidence 2111100 0 00 00 0 01111222223 344456667888899999998876543 223333 Q ss_pred ccceeEEEEcCCCccccee-----------------------------------------------------------eE Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKV-----------------------------------------------------------FE 157 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~-----------------------------------------------------------~~ 157 (457) .++.+.++..+.+...+ +. T Consensus 152 --~~y~v~~d~~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~~~~~~s 229 (542) T protein:vir:78 152 --DRYVIERDGDGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVFTCCKLVDGQHR 229 (542) T ss_pred --ceeEEeeCCCCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCccccccccCCCeEE Confidence 33444444333221100 01 Q ss_pred EEEEeeecc--c-ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCC Q lcl|Aclame:pro 158 AYDIDADGN--E-VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMS 234 (457) Q Consensus 158 ~y~~~~~~~--~-~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 234 (457) +|....... . .....|...-.+-.|.....+..||.||.+.+...+.....+.+...........|.+++..+.... T Consensus 230 ~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~pp~lv~~~g~~~ 309 (542) T protein:vir:78 230 WHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGSAAAAKVVFMVSPSATTK 309 (542) T ss_pred EEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccc Confidence 111000000 0 0000122223344444445567899999999999999999999999999888888887665443333 Q ss_pred HHHHHHHHHHHHHHhccccccCcceeccCcceeeeccC-ChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccc Q lcl|Aclame:pro 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAM-SPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGS 312 (457) Q Consensus 235 ~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~ 312 (457) +.... .+ .+ | .++-+.+-++.++.. ++.+.+ ..+..+.....|..+|-+- ...++...++ T Consensus 310 ~~~~~----------~~-~~-g-~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~~-----~~~d~~rvTA 371 (542) T protein:vir:78 310 PQSLA----------RA-GT-G-AIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLIL-----NVRQSERTTA 371 (542) T ss_pred hhhcc----------cC-CC-c-eeecCCccceeeeecccccchhHHHHHHHHHHHHHHHHhccc-----ccCCcccccH Confidence 32111 11 11 1 122222233333321 223333 3455677778888888432 2223333232 Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH-------------hhhcCccccccceEEEecchhhh-----ccHHHHHHHHHHH Q lcl|Aclame:pro 313 GLAEQNIAFTMFSLRPWLERIEAGFN-------------RLLFAETADRFRFVKFNLDEIKR-----GAPKERMELWSLG 374 (457) Q Consensus 313 ~~e~~~~~~~~~~l~P~~~~ie~~l~-------------~~ll~~~~~~~~~~~f~~~~~~~-----~d~~~~~~~~~~~ 374 (457) .--..+..-....|.|....++++|- ..+|++..... ++..+.+.+. .+......++..+ T Consensus 372 tEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~l--v~~~~~s~La~~~r~~~~~~l~~~~~~i 449 (542) T protein:vir:78 372 TEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGL--VMPTVVAGLGGVGRGEDRAALIEFMQTV 449 (542) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhc--eeeeeechHHHHHHHHHHHHHHHHHHHH Confidence 21122233334556666666655543 22344332222 3444433221 1111111111111 Q ss_pred HhC-C------CcCHHH----HHHHhCCCCCCCCCCceeeeccccccccccc-------------------ccccccCCC Q lcl|Aclame:pro 375 LQN-G------IYSIDE----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEP-------------------EPEPAPAPP 424 (457) Q Consensus 375 ~~~-g------~~T~nE----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~-------------------~~~~~~~~~ 424 (457) -+. | .+..++ +.+.+|.|+. ++....... ....+..+- T Consensus 450 ~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~------------~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~ 517 (542) T protein:vir:78 450 GQAMGPEALQQFIDPTEFLKRLAAASGIDTL------------NLVKSPETMANEAQQAQQQQMTASLMGQAGQLAKSPI 517 (542) T ss_pred HHhcCChhHHhcCCHHHHHHHHHHHcCCCHh------------hccCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc Confidence 110 0 112222 2223444421 111100000 000000000 Q ss_pred ccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 425 AIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) +.........++ ...+..+.-|++- T Consensus 518 ~~~~~~~~~a~~---~~~~~~~~~~~~~ 542 (542) T protein:vir:78 518 GEKMMQQINAPG---QEAPAGPQTGEDL 542 (542) T ss_pred ccchhhhcCCCC---cCCCCCCcccccC Confidence 000000111111 0011112222222 No 238 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=92.86 E-value=0.0089 Score=31.83 Aligned_cols=405 Identities=11% Similarity=0.017 Sum_probs=147.7 Q ss_pred Cch---hhhh-----------hcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGF---WSAL-----------FGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~---~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) -.| |..+ +..... .........+++. .. -.+....+-|...+ T Consensus 22 ~~~e~~w~e~~~~~lP~~~~~~~~~~~-~~~~~~~~~~dst------------------~~-----~a~~~LAa~L~~~l 77 (555) T protein:vir:10 22 ESWMSHWKEISDYLLPRAGRFFVQDRN-RGEKRHNNILDNT------------------GT-----RALRVLAAGMMAGM 77 (555) T ss_pred hHHHHHHHHHHHHhCcccccccCCCCC-cchhccccccccc------------------HH-----HHHHHHHHHHHHhh Confidence 111 1111 110000 0000000011110 00 11111222222222 Q ss_pred -c-cCce-EEEEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEE Q lcl|Aclame:pro 67 -A-TLPL-STYSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDV 135 (457) Q Consensus 67 -a-~~p~-~~~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~ 135 (457) . +-|| ++...+.+-.... ....++..+.+-| ++.-+-.++.++..+|++.+++..+.++...+.. T Consensus 78 tpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~ 153 (555) T protein:vir:10 78 TSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSN----TYRALHSMYEELGAFGTASSIVLPDFDAVVYHHS 153 (555) T ss_pred cCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceEEEEecCCCceEEEEE Confidence 1 3333 1111100000000 0011112222322 3444556778899999999999877666666667 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEee--------------------------------------e------------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDA--------------------------------------D------------- 164 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~--------------------------------------~------------- 164 (457) ++..++.+.++..+.+...+ ..+.... . T Consensus 154 ~pl~~~~v~~d~~G~vd~i~-r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p 232 (555) T protein:vir:10 154 LTAGEYAIAADNQGRVNTLY-REFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMA 232 (555) T ss_pred eecceeEEeeCCCCCEEEEE-EEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccc Confidence 77777777666655331111 0000000 0 Q ss_pred ----------ccc--ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 165 ----------GNE--VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 165 ----------~~~--~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) .+. .....|...-.+..|.....+..||.||.+.+...+.....+.+.......-...|...+..+.. T Consensus 233 ~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:10 233 WKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred eEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 000 00000111122334444445668999999999999999999999888888887777776554332 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceecc---CcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLT---EGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~---~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ..+ + +.. .|++-.+. .+-.+.++-....|.+ ..+..+.....|.++|=..........++. T Consensus 313 ~~~---------~-~~~-----pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~ 377 (555) T protein:vir:10 313 NQD---------I-STV-----PGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNP 377 (555) T ss_pred ccc---------c-eec-----cccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCC Confidence 111 0 001 12221111 1122333322222333 445568888999999977643332222222 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH------------h-hhcCcc--ccccceEEEecchhh-hccHHHHHHHHH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFN------------R-LLFAET--ADRFRFVKFNLDEIK-RGAPKERMELWS 372 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~------------~-~ll~~~--~~~~~~~~f~~~~~~-~~d~~~~~~~~~ 372 (457) .-++.--..+..-....|.|....+.++|- + .+||+. +..+..+.+.+-+.+ +.-.......+. T Consensus 378 ~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~ 457 (555) T protein:vir:10 378 QMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVD 457 (555) T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHH Confidence 222221122233334445555555544442 2 233432 223334444443333 221111111111 Q ss_pred HH---Hh--CCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccc----cccccCCCccCC------------CCC Q lcl|Aclame:pro 373 LG---LQ--NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE----PEPAPAPPAIDP------------PAE 431 (457) Q Consensus 373 ~~---~~--~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~----~~~~~~~~~~~~------------~~~ 431 (457) .. +. .++ -| |+-..++.+.+-...++.+-+|.++........ +....++..... -++ T Consensus 458 ~~l~~i~~laq~-~P-~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~ 535 (555) T protein:vir:10 458 RFVGNLGAVAGI-KP-EVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGS 535 (555) T ss_pred HHHHHHHHHhcC-Ch-hhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 11 11 011 11 122222222111111222222322221111100 000000000000 000 Q ss_pred CCCCCCCcccCCCCcccccc Q lcl|Aclame:pro 432 EPADDEEPDNAEGDPDEGET 451 (457) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (457) ...+....-.+--.-..|.+ T Consensus 536 ~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 536 VDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred cccCcchhHHHHHhhhccCC Confidence 00000000000000111111 No 239 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=92.86 E-value=0.0089 Score=31.83 Aligned_cols=405 Identities=11% Similarity=0.017 Sum_probs=147.7 Q ss_pred Cch---hhhh-----------hcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGF---WSAL-----------FGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~---~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) -.| |..+ +..... .........+++. .. -.+....+-|...+ T Consensus 22 ~~~e~~w~e~~~~~lP~~~~~~~~~~~-~~~~~~~~~~dst------------------~~-----~a~~~LAa~L~~~l 77 (555) T protein:vir:98 22 ESWMSHWKEISDYLLPRAGRFFVQDRN-RGEKRHNNILDNT------------------GT-----RALRVLAAGMMAGM 77 (555) T ss_pred hHHHHHHHHHHHHhCcccccccCCCCC-cchhccccccccc------------------HH-----HHHHHHHHHHHHhh Confidence 111 1111 110000 0000000011110 00 11111222222222 Q ss_pred -c-cCce-EEEEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEE Q lcl|Aclame:pro 67 -A-TLPL-STYSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDV 135 (457) Q Consensus 67 -a-~~p~-~~~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~ 135 (457) . +-|| ++...+.+-.... ....++..+.+-| ++.-+-.++.++..+|++.+++..+.++...+.. T Consensus 78 tpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~ 153 (555) T protein:vir:98 78 TSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSN----TYRALHSMYEELGAFGTASSIVLPDFDAVVYHHS 153 (555) T ss_pred cCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceEEEEecCCCceEEEEE Confidence 1 3333 1111100000000 0011112222322 3444556778899999999999877666666667 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEee--------------------------------------e------------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDA--------------------------------------D------------- 164 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~--------------------------------------~------------- 164 (457) ++..++.+.++..+.+...+ ..+.... . T Consensus 154 ~pl~~~~v~~d~~G~vd~i~-r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p 232 (555) T protein:vir:98 154 LTAGEYAIAADNQGRVNTLY-REFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMA 232 (555) T ss_pred eecceeEEeeCCCCCEEEEE-EEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccc Confidence 77777777666655331111 0000000 0 Q ss_pred ----------ccc--ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 165 ----------GNE--VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 165 ----------~~~--~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) .+. .....|...-.+..|.....+..||.||.+.+...+.....+.+.......-...|...+..+.. T Consensus 233 ~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:98 233 WKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred eEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 000 00000111122334444445668999999999999999999999888888887777776554332 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceecc---CcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLT---EGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~---~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ..+ + +.. .|++-.+. .+-.+.++-....|.+ ..+..+.....|.++|=..........++. T Consensus 313 ~~~---------~-~~~-----pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~ 377 (555) T protein:vir:98 313 NQD---------I-STV-----PGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNP 377 (555) T ss_pred ccc---------c-eec-----cccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCC Confidence 111 0 001 12221111 1122333322222333 445568888999999977643332222222 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH------------h-hhcCcc--ccccceEEEecchhh-hccHHHHHHHHH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFN------------R-LLFAET--ADRFRFVKFNLDEIK-RGAPKERMELWS 372 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~------------~-~ll~~~--~~~~~~~~f~~~~~~-~~d~~~~~~~~~ 372 (457) .-++.--..+..-....|.|....+.++|- + .+||+. +..+..+.+.+-+.+ +.-.......+. T Consensus 378 ~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~ 457 (555) T protein:vir:98 378 QMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVD 457 (555) T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHH Confidence 222221122233334445555555544442 2 233432 223334444443333 221111111111 Q ss_pred HH---Hh--CCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccc----cccccCCCccCC------------CCC Q lcl|Aclame:pro 373 LG---LQ--NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE----PEPAPAPPAIDP------------PAE 431 (457) Q Consensus 373 ~~---~~--~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~----~~~~~~~~~~~~------------~~~ 431 (457) .. +. .++ -| |+-..++.+.+-...++.+-+|.++........ +....++..... -++ T Consensus 458 ~~l~~i~~laq~-~P-~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~ 535 (555) T protein:vir:98 458 RFVGNLGAVAGI-KP-EVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGS 535 (555) T ss_pred HHHHHHHHHhcC-Ch-hhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 11 11 011 11 122222222111111222222322221111100 000000000000 000 Q ss_pred CCCCCCCcccCCCCcccccc Q lcl|Aclame:pro 432 EPADDEEPDNAEGDPDEGET 451 (457) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (457) ...+....-.+--.-..|.+ T Consensus 536 ~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:98 536 VDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred cccCcchhHHHHHhhhccCC Confidence 00000000000000111111 No 240 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=92.86 E-value=0.0089 Score=31.83 Aligned_cols=405 Identities=11% Similarity=0.017 Sum_probs=147.7 Q ss_pred Cch---hhhh-----------hcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGF---WSAL-----------FGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~---~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) -.| |..+ +..... .........+++. .. -.+....+-|...+ T Consensus 22 ~~~e~~w~e~~~~~lP~~~~~~~~~~~-~~~~~~~~~~dst------------------~~-----~a~~~LAa~L~~~l 77 (555) T protein:vir:10 22 ESWMSHWKEISDYLLPRAGRFFVQDRN-RGEKRHNNILDNT------------------GT-----RALRVLAAGMMAGM 77 (555) T ss_pred hHHHHHHHHHHHHhCcccccccCCCCC-cchhccccccccc------------------HH-----HHHHHHHHHHHHhh Confidence 111 1111 110000 0000000011110 00 11111222222222 Q ss_pred -c-cCce-EEEEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEE Q lcl|Aclame:pro 67 -A-TLPL-STYSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDV 135 (457) Q Consensus 67 -a-~~p~-~~~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~ 135 (457) . +-|| ++...+.+-.... ....++..+.+-| ++.-+-.++.++..+|++.+++..+.++...+.. T Consensus 78 tpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~ 153 (555) T protein:vir:10 78 TSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSN----TYRALHSMYEELGAFGTASSIVLPDFDAVVYHHS 153 (555) T ss_pred cCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceEEEEecCCCceEEEEE Confidence 1 3333 1111100000000 0011112222322 3444556778899999999999877666666667 Q ss_pred eccceeEEEEcCCCcccceeeEEEEEee--------------------------------------e------------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDA--------------------------------------D------------- 164 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~~~~~y~~~~--------------------------------------~------------- 164 (457) ++..++.+.++..+.+...+ ..+.... . T Consensus 154 ~pl~~~~v~~d~~G~vd~i~-r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p 232 (555) T protein:vir:10 154 LTAGEYAIAADNQGRVNTLY-REFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMA 232 (555) T ss_pred eecceeEEeeCCCCCEEEEE-EEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccc Confidence 77777777666655331111 0000000 0 Q ss_pred ----------ccc--ceeEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 165 ----------GNE--VLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 165 ----------~~~--~~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) .+. .....|...-.+..|.....+..||.||.+.+...+.....+.+.......-...|...+..+.. T Consensus 233 ~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:10 233 WKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred eEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 000 00000111122334444445668999999999999999999999888888887777776554332 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceecc---CcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLT---EGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~---~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ..+ + +.. .|++-.+. .+-.+.++-....|.+ ..+..+.....|.++|=..........++. T Consensus 313 ~~~---------~-~~~-----pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~ 377 (555) T protein:vir:10 313 NQD---------I-STV-----PGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNP 377 (555) T ss_pred ccc---------c-eec-----cccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCC Confidence 111 0 001 12221111 1122333322222333 445568888999999977643332222222 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH------------h-hhcCcc--ccccceEEEecchhh-hccHHHHHHHHH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFN------------R-LLFAET--ADRFRFVKFNLDEIK-RGAPKERMELWS 372 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~------------~-~ll~~~--~~~~~~~~f~~~~~~-~~d~~~~~~~~~ 372 (457) .-++.--..+..-....|.|....+.++|- + .+||+. +..+..+.+.+-+.+ +.-.......+. T Consensus 378 ~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~ 457 (555) T protein:vir:10 378 QMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVD 457 (555) T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHH Confidence 222221122233334445555555544442 2 233432 223334444443333 221111111111 Q ss_pred HH---Hh--CCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccc----cccccCCCccCC------------CCC Q lcl|Aclame:pro 373 LG---LQ--NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE----PEPAPAPPAIDP------------PAE 431 (457) Q Consensus 373 ~~---~~--~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~----~~~~~~~~~~~~------------~~~ 431 (457) .. +. .++ -| |+-..++.+.+-...++.+-+|.++........ +....++..... -++ T Consensus 458 ~~l~~i~~laq~-~P-~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~ 535 (555) T protein:vir:10 458 RFVGNLGAVAGI-KP-EVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGS 535 (555) T ss_pred HHHHHHHHHhcC-Ch-hhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 11 11 011 11 122222222111111222222322221111100 000000000000 000 Q ss_pred CCCCCCCcccCCCCcccccc Q lcl|Aclame:pro 432 EPADDEEPDNAEGDPDEGET 451 (457) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (457) ...+....-.+--.-..|.+ T Consensus 536 ~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 536 VDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred cccCcchhHHHHHhhhccCC Confidence 00000000000000111111 No 241 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=91.54 E-value=0.015 Score=30.53 Aligned_cols=427 Identities=13% Similarity=0.020 Sum_probs=159.2 Q ss_pred Cc-----hhhhhhcccccc--cccccccccccccchhhhcc---cccc----cCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MG-----FWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNL---GATA----SSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg-----~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) |. +.+.+.++...- ........-.+-...+.+.. .... ..+...+ ...+. ++-..|++.+|..+ T Consensus 1 m~~d~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~-~~~~d-stg~~a~~~LAs~l 78 (549) T protein:vir:10 1 MTNDDAKILQALNADHGRMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERS-QKMFD-STAPLALRNFVAAM 78 (549) T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccc-ccccc-chHHHHHHHHHHHH Confidence 32 111111111100 00000000000001111100 0000 0010000 11222 33344555555544 Q ss_pred -ccC-----ce-EEEEeccCceeeecCcchhhhccC--------CC-CCCCHHHHHHHHHHHHHHcCCeEEEEEecCCce Q lcl|Aclame:pro 67 -ATL-----PL-STYSKRGGTRKEIDTPEWLDFPNA--------EP-GGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNI 130 (457) Q Consensus 67 -a~~-----p~-~~~~~~~~~~~~~~~~~~~~l~~~--------pn-~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~ 130 (457) +.+ || ++...... ..+......++.. -+ ..-+++.-+-.++.++.++|++.+++..+.++. T Consensus 79 ~~~ltpp~~~wF~l~~~~~~---~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~ 155 (549) T protein:vir:10 79 DSMITPATQLWHRLKTGNDA---LNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKG 155 (549) T ss_pred HhhccCCCCccccccCCccc---hhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCe Confidence 333 33 22211111 1111111111111 11 112344455667788999999999998887777 Q ss_pred eEEEEeccceeEEEEcCCCcccceeeEEEEEeee-----------------------------------cc-------cc Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDAD-----------------------------------GN-------EV 168 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~~~~y~~~~~-----------------------------------~~-------~~ 168 (457) ..+..+|..++.+.++..+.+...+ ..|..... .. .. T Consensus 156 ~~f~~~pl~~~~v~~d~~G~vd~i~-r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~ 234 (549) T protein:vir:10 156 IVYRNVPMQRLWFAENNSGLIDKTH-VQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRDPRKLDG 234 (549) T ss_pred eEEEEEEcCeEEEeeCCCCCeEEEE-EEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCCcccccc Confidence 7777777788877777665432211 11100000 00 00 Q ss_pred e-----eEEe--ccce-----------EEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecC Q lcl|Aclame:pro 169 L-----LGWF--TPRD-----------VLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP 230 (457) Q Consensus 169 ~-----~~~~--~~~e-----------vih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~ 230 (457) . ...+ ..+. .+-.|.....+..||.||.+.+...+.....+.+...........|.+.+... T Consensus 235 ~~~pf~sv~~e~~~~~il~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~ 314 (549) T protein:vir:10 235 RNMQFASYWLDEGRDRIVQNSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPPLLANED 314 (549) T ss_pred ccCceEEEEEEecCCEeeccCCcccCCcceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccc Confidence 0 0000 0011 12222233345689999999999999999999999999888888888876544 Q ss_pred CCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhcccccccc Q lcl|Aclame:pro 231 GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) Q Consensus 231 ~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~ 309 (457) ....+... .-|+.+. ....-.+...++|+.... +.+ ..+..+.....|..+|-+....+.. ++.. T Consensus 315 g~~~~~~l----------~pgg~~~-~~~~~~~~~~~~pl~~~~-~~~~~~~~i~~~~~rI~~af~~d~~~~~~--~~~~ 380 (549) T protein:vir:10 315 GVLDGFDL----------RSGALNW-GGLNDKGEEMVKPLLTGK-QAQIGIEFAQDTRQTINQWFYVTLFQILV--DSGD 380 (549) T ss_pred ccccccee----------ccCCccc-cccCCCCccceeeecccc-chhHHHHHHHHHHHHHHHHHhhhhhhhhc--CCCC Confidence 33333111 1111111 011112334577776543 333 3344677888999999877643221 1112 Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-------------hhhcCcccc----ccceEEEecch-hhhccHHHHHHHH Q lcl|Aclame:pro 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFN-------------RLLFAETAD----RFRFVKFNLDE-IKRGAPKERMELW 371 (457) Q Consensus 310 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~-------------~~ll~~~~~----~~~~~~f~~~~-~~~~d~~~~~~~~ 371 (457) -++.--..+..-....|.|....+.++|- ..+||+... .+..+.+.+-+ |-+.-.......+ T Consensus 381 ~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i 460 (549) T protein:vir:10 381 MTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAI 460 (549) T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhcCCceeEEEeecHHHHHHHHHHHHHH Confidence 22211112222233445555555544432 223443221 12234444333 3222111222211 Q ss_pred HHHHh-----CCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccc-------cccccC-CCccCCCCCCCCCCCC Q lcl|Aclame:pro 372 SLGLQ-----NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE-------PEPAPA-PPAIDPPAEEPADDEE 438 (457) Q Consensus 372 ~~~~~-----~g~~T~nE~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~ 438 (457) ...++ .+ +.| |+-..++.+.+-...++.+-+|.++...+.... .+.... ..+........+.+-. T Consensus 461 ~~~~~~~~~laq-~~P-e~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~~~~~~a~~a~~~a~~~~ 538 (549) T protein:vir:10 461 LQWLQQLGIVSQ-FDP-AAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQQMLAAAPVAAGAIKDLS 538 (549) T ss_pred HHHHHHHHHHhc-cCh-hHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 11111 01 112 122222222111111222222222111111100 000000 0000000000000000 Q ss_pred cccCCCCcccc Q lcl|Aclame:pro 439 PDNAEGDPDEG 449 (457) Q Consensus 439 ~~~~~~~~~~~ 449 (457) +.....++..- T Consensus 539 ~~~ta~~~~~~ 549 (549) T protein:vir:10 539 DAQTAAQTARV 549 (549) T ss_pred hhcCCCcccCC Confidence 00000011000 No 242 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=89.73 E-value=0.025 Score=29.40 Aligned_cols=392 Identities=11% Similarity=0.004 Sum_probs=149.3 Q ss_pred Cchhhhhhcccccccc--------------cccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGFWSALFGRGHSPAL--------------DAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) -..|..+... .-|.. .......+++... . .+.....-+-..+ T Consensus 21 e~~w~e~~~~-~lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~------------------~-----a~~~Las~L~~~l 76 (547) T protein:vir:10 21 EQIWDCIRKY-IMPMRSDFFSDLRSEGSINWNQNREVFDSTAG------------------D-----GLETLSSSLHGSL 76 (547) T ss_pred HHHHHHHHHH-hcccccccccCCCCCcccccccccccccchHH------------------H-----HHHHHHHHHHHhh Confidence 1111111000 00000 0000000111000 0 0111111111111 Q ss_pred -c-cCce-EEEEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CceeEE Q lcl|Aclame:pro 67 -A-TLPL-STYSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PNIAGL 133 (457) Q Consensus 67 -a-~~p~-~~~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~~~~~ 133 (457) . +-|| ++...+....... ....++..+.+-| ++.-+-.++.+++.+|++.+++..+. .....+ T Consensus 77 tPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~ 152 (547) T protein:vir:10 77 TSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSN----FNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVF 152 (547) T ss_pred cCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeE Confidence 1 2222 1100000000000 0111122333333 33445566788999999999987653 233445 Q ss_pred EEeccceeEEEEcCCCcccceee-------------------------------------EEEEEeeec--cc------- Q lcl|Aclame:pro 134 DVLDPTKIHVHMVMVDGLRRKVF-------------------------------------EAYDIDADG--NE------- 167 (457) Q Consensus 134 ~~l~p~~v~~~~~~~~~~~~~~~-------------------------------------~~y~~~~~~--~~------- 167 (457) ..++..++.+.++..+.+...+. ..|...... .. T Consensus 153 ~~~pl~~~~v~~d~~G~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~ 232 (547) T protein:vir:10 153 QSSPIQDSYFEEDSRGQVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMCVFTRYDKKQNRNAGT 232 (547) T ss_pred EEeecceEEEeeCCCcCeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEEEeeccCCCCCccccc Confidence 56777777666666554311100 000000000 00 Q ss_pred ------c--eeEE--------------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcce Q lcl|Aclame:pro 168 ------V--LLGW--------------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGA 225 (457) Q Consensus 168 ------~--~~~~--------------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~ 225 (457) . .... |...-.+..|.....+..||.||.+.+...+.....+.+...........|.+ T Consensus 233 ~~~~~~~p~~s~~~e~~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~ 312 (547) T protein:vir:10 233 VLAPTERPFGKKWILKEGAVQLGEEGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSEKVIDPAI 312 (547) T ss_pred eeeccccceeEEEEEecCceeeeecCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0 0000 11112444455555567899999999999999999999999888888888887 Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccc Q lcl|Aclame:pro 226 VVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT 305 (457) Q Consensus 226 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~ 305 (457) ++..+....+ +. . ..|++.+.+..-.++++...+.-....+..+.....|..+|-+....+...+ T Consensus 313 ~v~~~g~~~~---------~~---~---~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~ 377 (547) T protein:vir:10 313 MVTERGLISD---------ID---L---GASGLTVVRDMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQMKDSP 377 (547) T ss_pred eccccccccc---------ce---e---cCCeeeecCCcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhhcCCCc Confidence 6553332221 10 1 1255666666667888865543333346678888899999987665443222 Q ss_pred ccccccchHHHHHHHHHHHHHhhHHHHHHHHH------------H-hhhcCcccc-----ccceEEEecch-hhhccHHH Q lcl|Aclame:pro 306 NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGF------------N-RLLFAETAD-----RFRFVKFNLDE-IKRGAPKE 366 (457) Q Consensus 306 ~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l------------~-~~ll~~~~~-----~~~~~~f~~~~-~~~~d~~~ 366 (457) ..+..-+ ..+..-....|.|....++++| . ..+||+... .+..+++.+-+ +-+.-... T Consensus 378 --~~TAtEV-~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~~~ 454 (547) T protein:vir:10 378 --AMTATEV-QVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQKID 454 (547) T ss_pred --cccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHHHH Confidence 2222111 1222222333444444444333 2 223343211 12233333333 22221111 Q ss_pred HHHHHHHHHh-----CC-------CcCHHHH----HHHhCCCCCCCCCCceeeeccccccccccccc-ccccCCCc---- Q lcl|Aclame:pro 367 RMELWSLGLQ-----NG-------IYSIDEV----RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEP-EPAPAPPA---- 425 (457) Q Consensus 367 ~~~~~~~~~~-----~g-------~~T~nE~----R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~-~~~~~~~~---- 425 (457) ....+...++ .+ .+..+++ -+.+|.|+. .+...--+..+-+.-.. +....+.+ T Consensus 455 ~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~------~irs~eev~~~r~qr~~~~q~~~qaa~~~~ 528 (547) T protein:vir:10 455 QAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQT------LMRPKAKVTSIRKNRSQTQQKAEQAAIAEA 528 (547) T ss_pred HHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChh------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2221111111 01 1233332 233454421 11110000000000000 00000000 Q ss_pred cCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 426 IDPPAEEPADDEEPDNAEGD 445 (457) Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~ 445 (457) ....-...+.... ...+++ T Consensus 529 ~g~~m~~~~~~~a-~~~~~~ 547 (547) T protein:vir:10 529 EGNAMEAQGKGQA-ALKENQ 547 (547) T ss_pred HHHHHHhhcCccc-chhccC Confidence 0000000000000 000000 No 243 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=89.51 E-value=0.026 Score=29.28 Aligned_cols=422 Identities=11% Similarity=-0.016 Sum_probs=146.0 Q ss_pred Cch---------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGF---------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSET 65 (457) Q Consensus 1 Mg~---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ 65 (457) |.- |+++..+.. .....-.+-...+.+..+........-.....+ .++...|++.+|.. T Consensus 1 ~~~~~~~~~~~~~~~~~r~~~l~~~R~-----~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Laa~ 74 (535) T protein:vir:94 1 MASSQKREGFAENGAKAVYDALKNDRN-----SYETRAENCAKYTIPSLFPKDSDNASTDYTTPW-QAVGARGLNNLASK 74 (535) T ss_pred CCchhhhhhHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhccccCCCCCCccccccCCcc-cccHHHHHHHHHHH Confidence 332 111111100 000000000111111111111100000011122 33444555565555 Q ss_pred hc-cC----ce-EEEEeccCceeeec----CcchhhhccC-------CCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC Q lcl|Aclame:pro 66 IA-TL----PL-STYSKRGGTRKEID----TPEWLDFPNA-------EPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGP 128 (457) Q Consensus 66 ia-~~----p~-~~~~~~~~~~~~~~----~~~~~~l~~~-------pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g 128 (457) +. .+ || ++...+........ ......++.. --..-+++.-+-.++.++..+|++.+++..+.+ T Consensus 75 l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~ 154 (535) T protein:vir:94 75 LMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEPEG 154 (535) T ss_pred HHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccCcC Confidence 53 22 33 11111100000000 0011111111 011122344455667888899999999876655 Q ss_pred ceeEEEEeccceeEEEEcCCCccccee-----------------------------eEEEEEee-ecccceeE------- Q lcl|Aclame:pro 129 NIAGLDVLDPTKIHVHMVMVDGLRRKV-----------------------------FEAYDIDA-DGNEVLLG------- 171 (457) Q Consensus 129 ~~~~~~~l~p~~v~~~~~~~~~~~~~~-----------------------------~~~y~~~~-~~~~~~~~------- 171 (457) ....+..++..++.+.++..+.+...+ ...|.... ...+..+. T Consensus 155 ~~~~f~~~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g 234 (535) T protein:vir:94 155 TYNPMKLYRLSSYVVQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLDEESGEYLKYEEIDG 234 (535) T ss_pred cccceEEEEcCeEEEeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEeeCCCCcEEEEEEecC Confidence 444444445555555555444331100 00111000 00000000 Q ss_pred ----------EeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHH Q lcl|Aclame:pro 172 ----------WFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARA 241 (457) Q Consensus 172 ----------~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~ 241 (457) .|...-.+..|.....+..||.||.+-+...+.....+.+.......-...|.+++..+....+... T Consensus 235 ~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~~--- 311 (535) T protein:vir:94 235 VEVEGTDASYPVDACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQVRRL--- 311 (535) T ss_pred eeeccccccCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhc--- Confidence 1122234444444455678999999999999999999988888877777767666654333333211 Q ss_pred HHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHH Q lcl|Aclame:pro 242 REAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF 321 (457) Q Consensus 242 ~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~ 321 (457) ..+.+..-+....+++...++...+.-....+..+.....|..+|=+.. +... ++...++.--..+..- T Consensus 312 --------~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--~~~~-d~~rvTAtEV~~r~~E 380 (535) T protein:vir:94 312 --------TKAQTGDFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLNS--AVQR-TGERVTAEEIRYVASE 380 (535) T ss_pred --------ccCCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHhh--hccC-CCCCccHHHHHHHHHH Confidence 1111111111123334455555433322334556777888988883221 2111 2222222111222223 Q ss_pred HHHHHhhHHHHHHHHHH-------------hhhcCccccccceEEEecchhh---h-ccHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 322 TMFSLRPWLERIEAGFN-------------RLLFAETADRFRFVKFNLDEIK---R-GAPKERMELWSLGLQNGIYSIDE 384 (457) Q Consensus 322 ~~~~l~P~~~~ie~~l~-------------~~ll~~~~~~~~~~~f~~~~~~---~-~d~~~~~~~~~~~~~~g~~T~nE 384 (457) ....|.|....++++|- ..+|++-......+.+ ++.+- + .+.+....++..+-+ +-| | T Consensus 381 ~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~-vs~la~l~r~~~~~~l~~~~~~laq---~~P-~ 455 (535) T protein:vir:94 381 LEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTI-STGMEALGRGQDLDKLERCIAAWSA---LAP-M 455 (535) T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceE-eehHHHHHHHHHHHHHHHHHHHHHh---hCh-H Confidence 34445555555544442 2344433222222222 12221 1 111222222221111 112 1 Q ss_pred HHH-HhCCCCCCCCCCceeeec-ccccccccccc----cc---cc---cCCCccCCCC-CCCCCCCC----cccCCCCcc Q lcl|Aclame:pro 385 VRA-AEDMTPLPDGLGEKYRVP-LNLGEIGEEPE----PE---PA---PAPPAIDPPA-EEPADDEE----PDNAEGDPD 447 (457) Q Consensus 385 ~R~-~~G~~p~~~~~gd~~~~~-~n~~~~~~~~~----~~---~~---~~~~~~~~~~-~~~~~~~~----~~~~~~~~~ 447 (457) +.. .++.+.+-...++.+-+| .++........ .. .+ .......... ....++.. ++.-.=-+. T Consensus 456 ~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:94 456 QGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAMQNAAASAGAGAGTMATASPENMKAAAAQAGMAPN 535 (535) T ss_pred HhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccChHHHHHHHHHhccCCC Confidence 111 122211111111112222 11111111000 00 00 0000000000 00000000 000000000 No 244 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=88.99 E-value=0.029 Score=29.02 Aligned_cols=431 Identities=12% Similarity=0.056 Sum_probs=158.7 Q ss_pred Cchhhhhhcccccccccc--ccc---ccccccc-hhhhccccccc--CccccCHHHHhccHHHHHHHHHHHHhhccC--- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDA--AEG---RAWEPYD-PSIYNLGATAS--SGERVTPHDALQVSAVFASVRLLSETIATL--- 69 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~--~~~---~~~~~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~--- 69 (457) =.++...+++....+... ... +...... ...+..+.... ....+.-+...-.+.|+.+|+.+..++... T Consensus 22 ~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~rs~~~~~~v~~~ve~~~~~l~~~~~~ 101 (651) T protein:vir:80 22 SSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRSVGDVNADWRHKITTGKAFEAIETIHAYLMSATFP 101 (651) T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhccccccccCCCCCCCCccccChhHHHHHHHHHHHHHHhhcC Confidence 112211111111111000 000 0000000 00000000000 000000012234577888887666555543 Q ss_pred --c-eEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----------------C- Q lcl|Aclame:pro 70 --P-LSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG-----------------P- 128 (457) Q Consensus 70 --p-~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-----------------g- 128 (457) . +++....+..........+..++...-....+......++.+.+.+|++++.+..+. + T Consensus 102 ~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~ 181 (651) T protein:vir:80 102 NKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLALPWRVETAEVKKKVQVRTPLFEDE 181 (651) T ss_pred CCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEEEeecceeeeeehheeccccccccc Confidence 2 222221111111111111222222211223356677788999999999977553210 0 Q ss_pred -------------ceeEEEEeccceeEEEEcCCC-----------------------cc--------------------- Q lcl|Aclame:pro 129 -------------NIAGLDVLDPTKIHVHMVMVD-----------------------GL--------------------- 151 (457) Q Consensus 129 -------------~~~~~~~l~p~~v~~~~~~~~-----------------------~~--------------------- 151 (457) ....+..++|..+-+.....+ +. T Consensus 182 ~~~~v~~~~~~~~~~~~i~~v~p~~~~~dp~a~~~~d~~~v~~~~~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 261 (651) T protein:vir:80 182 PTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFIRKLTKTKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTK 261 (651) T ss_pred cceeeeccceeeeceeEEEEecHHHeeecCCCcCccccceeeeeeeeHHHHHHHHhcccccchhhHHHHhhhccccccCC Confidence 001223344332211110000 00 Q ss_pred -------------------cceeeEEE-EEeeecccce--eEEeccceEE--------------EeccCCccCCccccch Q lcl|Aclame:pro 152 -------------------RRKVFEAY-DIDADGNEVL--LGWFTPRDVL--------------HIPGMMLPGDFVGCSP 195 (457) Q Consensus 152 -------------------~~~~~~~y-~~~~~~~~~~--~~~~~~~evi--------------h~~~~~~~~~~~G~s~ 195 (457) ...+...| .+........ ...+....|+ +++.....+..||.|+ T Consensus 262 ~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~ 341 (651) T protein:vir:80 262 QDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTYHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGA 341 (651) T ss_pred ccccccccCCCccccccccceEEEEEEEEeeccCCceEEEEEEEcCcEEecccccCCCCCCCeeeecceecCccccCCCh Confidence 00011111 1111100000 0111122333 3333334456799999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChh Q lcl|Aclame:pro 196 ISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPD 275 (457) Q Consensus 196 ~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~ 275 (457) ++.+.......+.+.+...........|.+++..+....+++.. ...|++++...+.++.++..... T Consensus 342 ~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~d~~~~~~~l~-------------~~pg~vi~~~~~~~~~~l~~~~~ 408 (651) T protein:vir:80 342 LQPNLGMLHELNIITNQRLDNLELAIDQMYTLRSDGLLQPEDVY-------------TEPGKVFLVSDHGDLQPLANQSS 408 (651) T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCccccHHHhh-------------cCCCceEEecCCCCceeeccCcc Confidence 99999999999999999988888888888887655554444321 11356677777777777754322 Q ss_pred HH-HHHHHHHHHHHHHHHHhCCCHHHhccccccc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc-------Cccc Q lcl|Aclame:pro 276 EA-QFLQTRQFQVPEIARIFGVPPHLISDATNST-SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF-------AETA 346 (457) Q Consensus 276 d~-~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~-~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll-------~~~~ 346 (457) +. ............+-..+||+....|....+. ..++..-.+...-....+.+++..+.+++..-|+ .++. T Consensus 409 ~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~ 488 (651) T protein:vir:80 409 NFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFT 488 (651) T ss_pred cchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 22 2234567777889999999999987654322 1122111233333455566666666655322221 1100 Q ss_pred c----------------------ccceEEEecchhhhcc---HHHHHHHHHHHHhCCCcC------------HHHHHHHh Q lcl|Aclame:pro 347 D----------------------RFRFVKFNLDEIKRGA---PKERMELWSLGLQNGIYS------------IDEVRAAE 389 (457) Q Consensus 347 ~----------------------~~~~~~f~~~~~~~~d---~~~~~~~~~~~~~~g~~T------------~nE~R~~~ 389 (457) . ......+++..+-... .......+..+++.+... .-++.+.+ T Consensus 489 ~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~ 568 (651) T protein:vir:80 489 DQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHW 568 (651) T ss_pred CcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHc Confidence 0 0000111111110001 112222222223221111 11223334 Q ss_pred CCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCC-cccccccc-ccCC Q lcl|Aclame:pro 390 DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGD-PDEGETED-DDDA 457 (457) Q Consensus 390 G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 457 (457) |++- .+.++.+..-. .+...++......+..+..-+......+ ....+.+- .|.. T Consensus 569 g~~~-----~~~~l~~~~q~--------~~~~~~~~~~~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 625 (651) T protein:vir:80 569 GFEE-----PEAYLKQQDQQ--------APANPQEALLSQAKDVGGQAMSNMLQNQLQADGGTQMMSEMY 625 (651) T ss_pred CCCC-----cHHhcCCCccc--------hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5431 12222211000 0000000000000000000000000000 00000000 0000 No 245 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=88.70 E-value=0.031 Score=28.88 Aligned_cols=413 Identities=13% Similarity=0.037 Sum_probs=163.1 Q ss_pred Cchhhhhhcccc------------ccccc-cccccc-ccc--cch--hhhcccccccCccc--------c-CHHHHhccH Q lcl|Aclame:pro 1 MGFWSALFGRGH------------SPALD-AAEGRA-WEP--YDP--SIYNLGATASSGER--------V-TPHDALQVS 53 (457) Q Consensus 1 Mg~~~~l~~~~~------------~~~~~-~~~~~~-~~~--~~~--~~~~~~~~~~~~~~--------v-~~~~~~~~~ 53 (457) ..||..|++-.. ..+.. ...+.. ... ..+ +..++.+....... + ..+..+.+| T Consensus 5 l~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma~~p 84 (521) T protein:vir:65 5 LKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNH 84 (521) T ss_pred hhhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHHhhcc Confidence 233333332111 00000 011100 000 000 11111111000000 1 234556799 Q ss_pred HHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe Q lcl|Aclame:pro 54 AVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) Q Consensus 54 ~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~ 125 (457) .|..||+-|.+.+.-. |+.+-.++-+ ..+......+..++.--+.... -..++..|.+.|..|.-++- T Consensus 85 Evd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fhkii 160 (521) T protein:vir:65 85 EVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRR----GQDMFRRWYVDSRIFFHKII 160 (521) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceeEEEEEE Confidence 9999999999887533 3333221110 0000111112222221222222 33455667888999988763 Q ss_pred c---CCceeEEEEeccceeEEEEcCCCccc------ceeeEEEEEee----------ecccceeEEeccceEEEeccCCc Q lcl|Aclame:pro 126 A---GPNIAGLDVLDPTKIHVHMVMVDGLR------RKVFEAYDIDA----------DGNEVLLGWFTPRDVLHIPGMML 186 (457) Q Consensus 126 ~---~g~~~~~~~l~p~~v~~~~~~~~~~~------~~~~~~y~~~~----------~~~~~~~~~~~~~evih~~~~~~ 186 (457) + ..+..++..|+|..+...+....... ......|.|.. ..+......++.+- |++-+... T Consensus 161 d~~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dA-I~y~hSGl 239 (521) T protein:vir:65 161 GKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSA-ITYAHSGL 239 (521) T ss_pred cCCccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhh-eeeeeccc Confidence 2 37899999999999977655432211 00111111111 01112223444444 44433222 Q ss_pred --cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCC-CCCHHHHHHHHHHHHHHhcc----------cc Q lcl|Aclame:pro 187 --PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARAREAWRAANSG----------VD 253 (457) Q Consensus 187 --~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~----------~~ 253 (457) .+...=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++- .+-...+++..+.+...+.. .. T Consensus 240 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 319 (521) T protein:vir:65 240 MDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLK 319 (521) T ss_pred eeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccccccc Confidence 233344677787777777766666665554333444444444442 22222333444444333322 11 Q ss_pred ccCccee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccch-HH--HH Q lcl|Aclame:pro 254 NAHRVAL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSG-LA--EQ 317 (457) Q Consensus 254 n~~~~~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~-~e--~~ 317 (457) +..+.+- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-++....+..+.+. .| -. T Consensus 320 ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRD 396 (521) T protein:vir:65 320 NQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRD 396 (521) T ss_pred ccccccchhhhhcccccCCCCccceeecccCCCcChHH---HHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHH Confidence 1111111 1 23556666643 334444 44667899999999999998655443322111 11 11 Q ss_pred HHHHHHHHHhhHHHHHH----HHHHhhhcC-----ccc--cccceEEEecchhhhcc-------HHHHHHHHHHHHh--C Q lcl|Aclame:pro 318 NIAFTMFSLRPWLERIE----AGFNRLLFA-----ETA--DRFRFVKFNLDEIKRGA-------PKERMELWSLGLQ--N 377 (457) Q Consensus 318 ~~~~~~~~l~P~~~~ie----~~l~~~ll~-----~~~--~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~~~--~ 377 (457) -..|. .-|..+..++. +.|..+|+- +.+ .-...++|++..--.-. +..+...+..+-. + T Consensus 397 EiKF~-KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvG 475 (521) T protein:vir:65 397 ELEFS-KFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIG 475 (521) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhc Confidence 11122 22344444444 444444332 111 12234455543211111 1233333333211 1 Q ss_pred CCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 378 GIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 378 g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) -.++.+=+|+ .+.+.-.+ +..... .-..+..++.-.++..+.+.- T Consensus 476 ky~S~dyi~k~ILr~tDee---------------i~~~~k---~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 476 KYFSNQTVMRDILKYTDDQ---------------MDTEKK---QIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred cccchHHHHHHHhccCHHH---------------HHHHHH---HHHHhhhCCCCCCCcccccCC Confidence 1234433433 23332110 000000 000000111111111111111 No 246 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=86.73 E-value=0.044 Score=28.05 Aligned_cols=390 Identities=8% Similarity=-0.049 Sum_probs=136.8 Q ss_pred Cchhhhh-----------hcccccccccccccccccccchhhh--------ccc---ccccCccccCHH---HHhccHHH Q lcl|Aclame:pro 1 MGFWSAL-----------FGRGHSPALDAAEGRAWEPYDPSIY--------NLG---ATASSGERVTPH---DALQVSAV 55 (457) Q Consensus 1 Mg~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~v~~~---~~~~~~~v 55 (457) -.|.++| |..... .....+.+++...... ... +.++-...++.. .+...+.. T Consensus 27 ~~~e~~w~e~~~~tlP~~~~~~~~---~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~ 103 (515) T protein:vir:70 27 SPYLDRAKHFAKLTLPYLMNNKGD---NETSQNGWQGVGAQATNHLANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLK 103 (515) T ss_pred hHHHHHHHHHHHHhcccccCCCCC---cccccccccchHHHHHHHHHHHHHHhhcCCCCcccccccChhhhhccccchhH Confidence 1111100 000000 0000111211111000 000 011111111111 11111122 Q ss_pred HHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEE Q lcl|Aclame:pro 56 FASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDV 135 (457) Q Consensus 56 ~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~ 135 (457) ++-++..-..+. ..++..+.+-| ++.-+-.++.++..+|++.+++...++ ...+| T Consensus 104 ~~~v~~~l~~ve-------------------~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~d~~~~--~~~~p 158 (515) T protein:vir:70 104 KTQLATIFARVE-------------------TTAMKALEQRQ----FRPAIVEVFKHLIVAGNCLLYKPSKGA--MSAVP 158 (515) T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHhcC----chHHHHHHHHHHHhHCeEEEEEeCCCC--eEEEE Confidence 221111000000 01111122222 233355556677788888877743322 23344 Q ss_pred eccceeEEEEcCCCcccce--------------------------------eeEEEEEeeeccccee-EE---------- Q lcl|Aclame:pro 136 LDPTKIHVHMVMVDGLRRK--------------------------------VFEAYDIDADGNEVLL-GW---------- 172 (457) Q Consensus 136 l~p~~v~~~~~~~~~~~~~--------------------------------~~~~y~~~~~~~~~~~-~~---------- 172 (457) | .++.+.++..+.+... ....|........... .. T Consensus 159 l--~~y~v~~d~~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~~~~~~~~~~~e~d~~~~~~ 236 (515) T protein:vir:70 159 M--HHYVVNRDTNGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQYAGEGFWKINQSADDIPVGK 236 (515) T ss_pred c--CeEEEeeCCCcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEecCCCceEEEEecCceeecc Confidence 4 3343333333322100 0001111110001000 00 Q ss_pred -----eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 173 -----FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRA 247 (457) Q Consensus 173 -----~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 247 (457) |...-.+-.|.....+..||.||.+.+...+.....+.+.......-...|.+++..+....+... T Consensus 237 es~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p~~lv~~~g~~~~~~l--------- 307 (515) T protein:vir:70 237 ESRIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAALMADIKYLIRPGSQTDVDHF--------- 307 (515) T ss_pred ccccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeeeCcccccchhhc--------- Confidence 111223333444445678999999999999999999999999988888888877754433332211 Q ss_pred HhccccccCcceeccCcceeeeccC-ChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 248 ANSGVDNAHRVALLTEGAKFSKVAM-SPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFS 325 (457) Q Consensus 248 ~~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~ 325 (457) ..+.+ +..+-+..-++.++.. +..+.+ ..+..+.....|.++|=+........+. .+. .--..+..-.... T Consensus 308 --~~~~~--g~iv~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd~~r--vTA-tEV~~r~~E~~~~ 380 (515) T protein:vir:70 308 --VNSGT--GEVITGVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIFMMETMTRRDAER--VTA-VEIQRDALEIEQN 380 (515) T ss_pred --cccCC--ceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhhccCCcc--ccH-HHHHHHHHHHHHH Confidence 11111 1122222223334432 223333 3355677788898998766543333221 222 1112223334555 Q ss_pred HhhHHHHHHHHHHhhh--------cCccccccceEEE--ecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 326 LRPWLERIEAGFNRLL--------FAETADRFRFVKF--NLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLP 395 (457) Q Consensus 326 l~P~~~~ie~~l~~~l--------l~~~~~~~~~~~f--~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~ 395 (457) |.|...++.++|-.-| +++.-.......+ -+..+-+.-...........+..-..-+-++...++.+..- T Consensus 381 LGpv~srL~~Ell~Pli~r~~~~~~p~~P~~~v~~~~vs~l~~L~r~q~~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~ 460 (515) T protein:vir:70 381 MGGVYSLFAMTMQTPIAMWGLQEAGDSFTSELVDPVIVTGIEALGRMAELDKLANFAQYMSLPQTWPEPAQRAIRWGDYM 460 (515) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhcccceehhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhhCCHHHHH Confidence 7777777666654444 2222111111110 11122221111111111122211001112233333322211 Q ss_pred CCCCceeeeccccccccccccccc-------c-------cCCCccCCCCCCCCCC Q lcl|Aclame:pro 396 DGLGEKYRVPLNLGEIGEEPEPEP-------A-------PAPPAIDPPAEEPADD 436 (457) Q Consensus 396 ~~~gd~~~~~~n~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~ 436 (457) +..++..-+|.++..........- . ..+.+.+...+..++. T Consensus 461 ~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 515 (515) T protein:vir:70 461 DWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGVAKAVPGVIQQEMKEG 515 (515) T ss_pred HHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhccC Confidence 112222233333322111111000 0 0000000111110000 No 247 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=86.48 E-value=0.045 Score=27.95 Aligned_cols=398 Identities=10% Similarity=-0.045 Sum_probs=144.2 Q ss_pred Cchhhhhhcccc-------------cccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh- Q lcl|Aclame:pro 1 MGFWSALFGRGH-------------SPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI- 66 (457) Q Consensus 1 Mg~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i- 66 (457) =..|+++..... -|......+..-. .-..... .. +.. -.+....+-|...+ T Consensus 15 k~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~-------~~~~~~~--ds-t~~-----~a~~~Laa~l~~~lt 79 (535) T protein:vir:15 15 KATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNES-------TDYTTPW--QA-VGA-----RGLNNLASKLMLALF 79 (535) T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCccc-------ccccccc--cc-cHH-----HHHHHHHHHHHHhhc Confidence 111111111000 0000000000000 0000000 00 000 12222222222222 Q ss_pred ccCceEEEEeccCcee--------e--------ecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCce Q lcl|Aclame:pro 67 ATLPLSTYSKRGGTRK--------E--------IDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNI 130 (457) Q Consensus 67 a~~p~~~~~~~~~~~~--------~--------~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~ 130 (457) -.-||--..-.+.... . .....++..+.+-| ++.-+..++.+++.+|++.+++..+.++. T Consensus 80 P~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~ 155 (535) T protein:vir:15 80 PMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNS----YRVTLFECLKQLIVAGNALLYLPEPEGSY 155 (535) T ss_pred CCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceeEEeecCCCCc Confidence 1124321111110000 0 00111122233333 44456667888889999999987665554 Q ss_pred eEEEEeccceeEEEEcCCCccccee------------------------------eEEEEEeeec-ccceeEE------- Q lcl|Aclame:pro 131 AGLDVLDPTKIHVHMVMVDGLRRKV------------------------------FEAYDIDADG-NEVLLGW------- 172 (457) Q Consensus 131 ~~~~~l~p~~v~~~~~~~~~~~~~~------------------------------~~~y~~~~~~-~~~~~~~------- 172 (457) ..+..++..++.+.++..+.+...+ ...|...... .+..... T Consensus 156 ~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~ 235 (535) T protein:vir:15 156 NPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDV 235 (535) T ss_pred eeeEEEEcCeeEEeeCCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEecCCCcEEEEEEeeCc Confidence 4455555555555555444221000 0011100000 0000000 Q ss_pred ----------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 173 ----------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAR 242 (457) Q Consensus 173 ----------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~ 242 (457) |...-.+..|.....+..||.||.+.+...+.....+.+...........|.+++..+......... T Consensus 236 ~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~l~--- 312 (535) T protein:vir:15 236 EIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRRLT--- 312 (535) T ss_pred cccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccccccchhcc--- Confidence 1112234444444556789999999999999999999999999988888888776644433332211 Q ss_pred HHHHHHhccccccCccee--ccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH Q lcl|Aclame:pro 243 EAWRAANSGVDNAHRVAL--LTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA 320 (457) Q Consensus 243 ~~~~~~~~~~~n~~~~~v--l~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~ 320 (457) .+.. +..+ -++++...++...+.-.-..+..+.....|..+|-+.. +... ++...++.--..+.. T Consensus 313 -------~~~~---g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~--~~~~-~~~r~TAtEV~~r~~ 379 (535) T protein:vir:15 313 -------KAQT---GDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNS--AVQR-TGERVTAEEIRYVAS 379 (535) T ss_pred -------cCCc---eeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--cccC-CCccccHHHHHHHHH Confidence 1111 1122 23334445554443333344556777888988884442 2111 122222211112222 Q ss_pred HHHHHHhhHHHHHHHHH-------------HhhhcCccccccceEEEecchhhh-----ccHHHHHHHHHHHHhC--C-- Q lcl|Aclame:pro 321 FTMFSLRPWLERIEAGF-------------NRLLFAETADRFRFVKFNLDEIKR-----GAPKERMELWSLGLQN--G-- 378 (457) Q Consensus 321 ~~~~~l~P~~~~ie~~l-------------~~~ll~~~~~~~~~~~f~~~~~~~-----~d~~~~~~~~~~~~~~--g-- 378 (457) -....|.|....+.++| ...+|++..... ++..+.+.+. .+......++..+-+. . T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~--v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~l 457 (535) T protein:vir:15 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEA--VEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQG 457 (535) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc--eeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhh Confidence 23334444444444443 223444333222 3333333221 1111222222211111 0 Q ss_pred --CcCHHH----HHHHhCCCCCCCCCCceeeecccccccccccc------------cccccCCCccCCCCCCCCCCC--- Q lcl|Aclame:pro 379 --IYSIDE----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPE------------PEPAPAPPAIDPPAEEPADDE--- 437 (457) Q Consensus 379 --~~T~nE----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~--- 437 (457) .+..++ +.+.+|.|+. ++........ .+.+...++. ........++ T Consensus 458 d~~id~d~~~~~~a~~~Gvp~~------------~i~~~~eev~~~~~q~~~~~~~~~~a~~~g~~-~~~~~~~~p~~~~ 524 (535) T protein:vir:15 458 DPDINLAVIKLRIANAIGIDTS------------GILLTDEQKQALMMQDAAQTGIENAAATGGAG-VGALATSSPEAMQ 524 (535) T ss_pred hccCCHHHHHHHHHHHcCCChh------------hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhccChHHHH Confidence 112222 2233455431 1111110000 0000000000 0000000000 Q ss_pred CcccCCCCccc Q lcl|Aclame:pro 438 EPDNAEGDPDE 448 (457) Q Consensus 438 ~~~~~~~~~~~ 448 (457) ...+.-|-+.. T Consensus 525 ~~~~~~g~~~~ 535 (535) T protein:vir:15 525 GAAAQAGLDAT 535 (535) T ss_pred HHHhccCCCCC Confidence 00111111100 No 248 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=86.18 E-value=0.047 Score=27.84 Aligned_cols=415 Identities=12% Similarity=0.027 Sum_probs=143.9 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCc--cccCHHHHhccHHHHHHHHHHHHhhc-cC-----ce- Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSG--ERVTPHDALQVSAVFASVRLLSETIA-TL-----PL- 71 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~v~~~i~~ia~~ia-~~-----p~- 71 (457) |.+-.++-.-.... ......-.+-...+.+..+...... ..-.....+. ++...|++.+|..+. .+ || T Consensus 1 m~~~~r~~~L~~~R--~~~e~~w~e~~~~tlP~~~~~~~~~~~~~~~~~~~~d-stg~~a~~~LAa~l~~~ltpp~~~WF 77 (522) T protein:vir:10 1 MKARERYNQLTTAR--QMFLDKAVECSELTLPYLIDDDISSRPNHKSLTVPWQ-SVGAKCCVTLAAKLMLAVLPPQTSFF 77 (522) T ss_pred CchHHHHHHHHHHh--hHHHHHHHHHHHHhhhcccCCCCCCCccccccccccc-chHHHHHHHHHHHHHHhhcCCCCccc Confidence 88755442111110 0001100011111111111111000 0001112233 344455666665553 22 33 Q ss_pred EEEEeccC-ceeee-------------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 72 STYSKRGG-TRKEI-------------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 72 ~~~~~~~~-~~~~~-------------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) ++...... ..... ....++..+.+- +++.-+-.++.++..+|++.+++..+..+ .+|| T Consensus 78 ~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~ly~~~~~~~---~~pl- 149 (522) T protein:vir:10 78 KLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAAS----NDRVAVHQALKHLIVGGNALIFMGKDGLK---TFPL- 149 (522) T ss_pred cccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCceeEEEcCCCce---EEEc- Confidence 22111100 00000 000111222332 34455666788889999999887655322 2333 Q ss_pred cceeEEEEcCCCccccee--------------------------------eEEEEEeeeccc-ceeEEe--ccce----- Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRKV--------------------------------FEAYDIDADGNE-VLLGWF--TPRD----- 177 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~~--------------------------------~~~y~~~~~~~~-~~~~~~--~~~e----- 177 (457) .++.+.++..+.+...+ ...|........ .....+ ..+. T Consensus 150 -~~y~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~~~~~~~~~~~~~ 228 (522) T protein:vir:10 150 -TRYVINRDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVWHQEAFDKIIPDS 228 (522) T ss_pred -ceEEEeeCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccCCceEEEEccCCcccccc Confidence 34444444433221100 011111000000 000000 1111 Q ss_pred ----------EEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 178 ----------VLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRA 247 (457) Q Consensus 178 ----------vih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 247 (457) .+-.|.....+..||.||.+.+...+.....+.+...........|.+++............ T Consensus 229 ~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~~~~l~-------- 300 (522) T protein:vir:10 229 RSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTTKPATIA-------- 300 (522) T ss_pred ccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecccccccccccc-------- Confidence 22223333346689999999999999999999999999888888888777544333332110 Q ss_pred HhccccccCcceecc--CcceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHH---- Q lcl|Aclame:pro 248 ANSGVDNAHRVALLT--EGAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA---- 320 (457) Q Consensus 248 ~~~~~~n~~~~~vl~--~g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~---- 320 (457) .+. .+..+.+ +++...++.. ..+.+ ..+..+.....|..+|= +....++..-++.--..+.. T Consensus 301 --~~~---~~~~v~g~~~~v~~~~~~~-~~d~~~~~~~i~~~~~ri~~aFl-----~~~~~d~~rvTAtEV~~r~~E~~~ 369 (522) T protein:vir:10 301 --KAG---NGAIVQGRPEDVAVIQVGK-TADFSTAANMATAIEKRLLEAFL-----VMNVRNAERVTAEEVRLTQLELEQ 369 (522) T ss_pred --CCC---CcceecCCCccceeecccc-cccchHHHHHHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHHH Confidence 111 1122222 2233333332 23333 34555677788888873 22222222222211112222 Q ss_pred --------HHHHHHhhHHHHHHHHHHh-hhcCcccccc-ceEEEec-chhhhc-cHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 321 --------FTMFSLRPWLERIEAGFNR-LLFAETADRF-RFVKFNL-DEIKRG-APKERMELWSLGLQNGIYSIDEVRAA 388 (457) Q Consensus 321 --------~~~~~l~P~~~~ie~~l~~-~ll~~~~~~~-~~~~f~~-~~~~~~-d~~~~~~~~~~~~~~g~~T~nE~R~~ 388 (457) +...-+.|++.+.-..+.+ .+|++..... .-..... +.|-+. +......++..+-+ ++-+-.+... T Consensus 370 ~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~is~Laraq~~~~l~~~~~~i~~--~~~p~~~~~~ 447 (522) T protein:vir:10 370 QLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAGVNALGRGQDRESLTAFVGTIAQ--TLGPEALMQY 447 (522) T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHH--hhCchhhhhc Confidence 2334444544444333332 2444332211 1111111 222221 11111111111111 0111111111 Q ss_pred hCCCCCCCCCCceeeec-ccccccccc-------ccccccc-------CCCccCCCCCCCCCCCCcccCCCCcccc Q lcl|Aclame:pro 389 EDMTPLPDGLGEKYRVP-LNLGEIGEE-------PEPEPAP-------APPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) Q Consensus 389 ~G~~p~~~~~gd~~~~~-~n~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457) ++.+..-+..++.+-+| .++...... ...+.+. .+-+..+. ..+..+++--+....+.++ T Consensus 448 id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 522 (522) T protein:vir:10 448 LNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPL-MDPTKNPQLMDEEQPPMEE 522 (522) T ss_pred CCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCccccHHHHHHhCCCCCC Confidence 22211111111111122 111111100 0000000 00000000 0001111000000001000 No 249 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=83.57 E-value=0.067 Score=27.01 Aligned_cols=417 Identities=13% Similarity=0.057 Sum_probs=161.1 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhc--cHHHHHHHHHHHHhhccCceEEEEecc Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQ--VSAVFASVRLLSETIATLPLSTYSKRG 78 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~i~~ia~~ia~~p~~~~~~~~ 78 (457) -||...+|.-..-..+....-..|-..+..+.. .-++..+++. ...|+...++|- ++..+.+++..-.. T Consensus 47 ~gfv~~~~~ng~i~~v~~~~l~~~f~npd~~~~--------~i~~l~~y~yi~~~~v~ql~~li~-~lp~l~y~i~~~~~ 117 (525) T protein:vir:10 47 DGFVMDLCNNGKIKTVNLDTLQLWFNNPDKYIN--------NIVNLLTYYYIIDGNVFQLYDLIF-SLPPLDYQIKVLKR 117 (525) T ss_pred HHHHHHhhcCCceeeeeHHHHHhhhcChHHHHH--------HHHHHHHHhhhhcchHHHHHHHHH-hcCCcceeehhhhh Confidence 333333332221111111111111000000000 0001111111 222333344432 23333333322111 Q ss_pred CceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE---------------------ecCCceeEEEEec Q lcl|Aclame:pro 79 GTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR---------------------WAGPNIAGLDVLD 137 (457) Q Consensus 79 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~---------------------~~~g~~~~~~~l~ 137 (457) .+. .+..+..++..-..-....++-+-++.++...|-..-.-. |..|..+... + T Consensus 118 ~k~---~~~~~s~~n~~l~k~i~hk~ltrdll~q~a~~gtlig~wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~vi--d 192 (525) T protein:vir:10 118 DKD---YKEDLSTINLYLEKKIQHKQLTRDLLVQLAHSGTLIGTWLGSKREPYFNVFNNLKYVFPYGRAKGKMVAVI--D 192 (525) T ss_pred ccc---hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccCceeEeeecCCCCcchhhhhhhhhhccccccCCceEEEE--e Confidence 111 1111111111111111112222333333333333111000 0111111100 0 Q ss_pred cceeEEEEcCCCc------------ccceeeEEEEEeeecccceeEEeccceEEEeccCCcc-CCccccchhHHHHHHHH Q lcl|Aclame:pro 138 PTKIHVHMVMVDG------------LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLP-GDFVGCSPISYARESIG 204 (457) Q Consensus 138 p~~v~~~~~~~~~------------~~~~~~~~y~~~~~~~~~~~~~~~~~evih~~~~~~~-~~~~G~s~~~~~~~~i~ 204 (457) -..+.-..+.... ..+.-+..|.. -+........+|.+.++|.|...+. ++..|.|.+..+.-.|. T Consensus 193 ~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~-~~~~~~r~i~LP~e~t~~lr~~tl~rnqrlG~s~vtp~l~dI~ 271 (525) T protein:vir:10 193 LQWFDEMSELERKLTFENLSPLITENKYKKWKEYNG-ENEDALRYIMLPISKTLVARIHTLSRNQRLGIPYGTQTLFDIQ 271 (525) T ss_pred hHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhccc-ccchhheeeecccceeEEeeecccccCcccCcchhhhHHHHHH Confidence 0000000000000 00111111110 0111122346788999999987665 55669999999998888 Q ss_pred HHHHHHHHHHHHHHccCCcceEEecCCCCC-----HHH-HHHHHHHHHHHhcc-ccccCccee--ccCcceeeeccCCh- Q lcl|Aclame:pro 205 LALAAQKYGAHFFRNGAMPGAVVEVPGTMS-----EEG-LARAREAWRAANSG-VDNAHRVAL--LTEGAKFSKVAMSP- 274 (457) Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-----~e~-~~~~~~~~~~~~~~-~~n~~~~~v--l~~g~~~~~~~~s~- 274 (457) ......+...+.+..=..|-.++++...-+ ++. ..++....+.+... .....++.+ ++.=+++.--.+.+ T Consensus 272 hk~klrd~EqsIA~kii~a~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik~~ 351 (525) T protein:vir:10 272 HKQKLRDLEQSIADKIIKAMAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVKDKNGIACIAMPDFATFEFPEIKNG 351 (525) T ss_pred HHHHHHHHHHHHHHHhhhhheeeeeccccCccccCchHHHHHHHHHHHHHHhcccccccCeEEEeccceeecccccccCc Confidence 888877777777777677777777654322 222 22333333333322 222334444 23333333111111 Q ss_pred ---hHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCccc--ccc Q lcl|Aclame:pro 275 ---DEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETA--DRF 349 (457) Q Consensus 275 ---~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll~~~~--~~~ 349 (457) -|-+ -.+....+|-.++|++.++++.. +++++++.. ....|++ -|.-+++.||+.. ++|+...- ..+ T Consensus 352 ~~glDg~---K~d~I~~DI~~A~GlS~sL~nGd-ggNyAtasl--nld~fyk-kigVm~e~Iee~y-~kL~d~Vl~~~k~ 423 (525) T protein:vir:10 352 DKTLDPK---KYDSIDNDITNATGISQVLTNGT-KGNYASAKL--NLDVFYK-KIGVMLEIIEEIY-NQLIDIILGEEKG 423 (525) T ss_pred ccCCCch---hhhhhhhhhhhhhccceeeecCC-CCceeeeee--eHHHHHH-HHHHHHHHHHHHH-HHHHhhhcCcccC Confidence 1111 23556789999999999999654 344444321 2223444 4777888888544 45654322 233 Q ss_pred ceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC-----------CCceeeecccccccccccccc Q lcl|Aclame:pro 350 RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG-----------LGEKYRVPLNLGEIGEEPEPE 418 (457) Q Consensus 350 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~-----------~gd~~~~~~n~~~~~~~~~~~ 418 (457) ..+.|+++.-...+.+.+.+.+-++-..|+.. --+....|+.--+.- .-++.+.|.+.-.+ .. T Consensus 424 ~nyifnydkd~pi~~kkk~d~LIkL~d~g~s~-k~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~~~~v~-SG---- 497 (525) T protein:vir:10 424 CNYIFQYNKDTPIEREKKLDTLIKLEAQGYSA-KYVLDILGISSEEYFEESIYEIEKLKLREKIMPPLNTNVL-SG---- 497 (525) T ss_pred cceEEecCCCchhhhhhhhhhhhhhhccchhh-hhhhhhhccCcchHHHHHHHHHHHHHHhhhccccccceee-ec---- Confidence 44557777777778888888888887777742 222223332211000 00111111111000 00 Q ss_pred cccCCCccCCCCCCCCCCCCcccCCCCccccc Q lcl|Aclame:pro 419 PAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457) +..+.. +.....+.+..++.-.+.+.|- T Consensus 498 --k~~n~i--G~P~~dd~~~~dati~s~~~~~ 525 (525) T protein:vir:10 498 --KDGNDI--GSPKLDDSDSSDATIESKERGV 525 (525) T ss_pred --cccccc--cCCccCCCcchhhhhhhhhcCC Confidence 000000 0000001111111111122222 No 250 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=82.70 E-value=0.075 Score=26.76 Aligned_cols=408 Identities=10% Similarity=-0.002 Sum_probs=145.1 Q ss_pred Cch--------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGF--------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~--------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) |.= |+.+.... ........+-...+.+..+........-.....+ .++...|++.+|..+ T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R-----~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~LAa~L 74 (532) T protein:vir:99 1 MAEVEKTGFAADGAAAAYNRLKNDR-----GAYETRAEDCATYTIPSVFPSATADGSTSYTTPW-QSIGARGLNNLASKL 74 (532) T ss_pred CcchhhccccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhhhcccCCCCCcchhhccccc-cchHHHHHHHHHHHH Confidence 221 11111100 0000000000111111111110000000011222 344455666666655 Q ss_pred c-cC-----ce-EEEEeccCceee-------ec-C-------cchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE Q lcl|Aclame:pro 67 A-TL-----PL-STYSKRGGTRKE-------ID-T-------PEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR 124 (457) Q Consensus 67 a-~~-----p~-~~~~~~~~~~~~-------~~-~-------~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~ 124 (457) . .+ || ++......-... .+ . ...+..+.+- +++.-+-.++.++..+|++++++. T Consensus 75 ~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~s----nf~~~~~~~~~~L~~~G~a~l~~~ 150 (532) T protein:vir:99 75 MLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESN----SFRPTLHAAIKQLLVAGNVLLYIP 150 (532) T ss_pred HHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCcEeEEec Confidence 3 22 33 221111000000 00 0 1111222222 244455667788899999998875 Q ss_pred ecC---CceeEEEEeccceeEEEEcCCCccccee------------------------------eEEEEEeeecccc-ee Q lcl|Aclame:pro 125 WAG---PNIAGLDVLDPTKIHVHMVMVDGLRRKV------------------------------FEAYDIDADGNEV-LL 170 (457) Q Consensus 125 ~~~---g~~~~~~~l~p~~v~~~~~~~~~~~~~~------------------------------~~~y~~~~~~~~~-~~ 170 (457) .+. ++...+..+|..++.+.++..+.+...+ ...|......... .. T Consensus 151 ~~~~~~~~~~~f~~~pl~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~ 230 (532) T protein:vir:99 151 STEQVEGQSNAPKLYKLHNFVVERDAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDPEAMVF 230 (532) T ss_pred ccccccCcccceEEEEcCeEEEeeCCCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecCCCCee Confidence 432 3333343444445555554444331111 0011100000000 00 Q ss_pred EE-----------------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCC Q lcl|Aclame:pro 171 GW-----------------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM 233 (457) Q Consensus 171 ~~-----------------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 233 (457) .. |...-.+-.|.....+..||.||.+.+...+.....+.+...........|.+++..+... T Consensus 231 ~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~ 310 (532) T protein:vir:99 231 RSYQEIDGEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISSKVLFFVNPNGVT 310 (532) T ss_pred EEEEeecCceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecccccc Confidence 00 1111223333333446689999999999999999999999888888877777766644443 Q ss_pred CHHHHHHHHHHHHHHhccccccCcc-eeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccc Q lcl|Aclame:pro 234 SEEGLARAREAWRAANSGVDNAHRV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGS 312 (457) Q Consensus 234 ~~e~~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~ 312 (457) .+.... .+ .+ |.+ .-..+.+...++...+.-....+..+.....|..+|=+.. +.. .++...++ T Consensus 311 ~~~~~~----------~~-~~-g~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--~~~-~d~~r~TA 375 (532) T protein:vir:99 311 QIRRVA----------KA-NT-GDFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLNS--AVQ-RGGDRVTA 375 (532) T ss_pred chhhhc----------cC-CC-cceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--ccc-CCCCcccH Confidence 332211 11 11 111 1112223333333322222234556777788888884432 111 12222222 Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH-------------hhhcCccccc--cceEEEecchhhhc-cHHHHHHHHHHHHh Q lcl|Aclame:pro 313 GLAEQNIAFTMFSLRPWLERIEAGFN-------------RLLFAETADR--FRFVKFNLDEIKRG-APKERMELWSLGLQ 376 (457) Q Consensus 313 ~~e~~~~~~~~~~l~P~~~~ie~~l~-------------~~ll~~~~~~--~~~~~f~~~~~~~~-d~~~~~~~~~~~~~ 376 (457) .--..+..-....|.|....+.++|- ..+|++.... ...+...++.|-+. +......++..+-+ T Consensus 376 tEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~~is~Laraq~~~~l~~~~~~laq 455 (532) T protein:vir:99 376 EEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIATGLEALGRGHDLNKLNVFIDYMIK 455 (532) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceeecchHHHHHHHHHHHHHHHHHHHh Confidence 11122222234445555555544442 2234432221 11222222333221 11111122211111 Q ss_pred C-----CCcCHHH----HHHHhCCCCCCCCCCceeeeccccccccccccc-----------ccccCCCccCCCCCCCCCC Q lcl|Aclame:pro 377 N-----GIYSIDE----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEP-----------EPAPAPPAIDPPAEEPADD 436 (457) Q Consensus 377 ~-----g~~T~nE----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 436 (457) . -.+..++ +.+.+|.+|.. .+..+--...+-..... ....++......+.+.+.+ T Consensus 456 ~~p~~~d~id~d~~~~~~a~~~GV~~~~-----i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 530 (532) T protein:vir:99 456 LAGLQDDDINLLDVKMRLANSLGMDTTG-----LILTQQDKQAKMAEASTAAGMVTAGQQMGAAGGQAAAAMMQQQAGMP 530 (532) T ss_pred hcchhhhhCCHHHHHHHHHHHhCCChhh-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHhhcCCC Confidence 0 0122222 22334443210 00000000000000000 0000011111122222222 Q ss_pred CC Q lcl|Aclame:pro 437 EE 438 (457) Q Consensus 437 ~~ 438 (457) .+ T Consensus 531 ~~ 532 (532) T protein:vir:99 531 TQ 532 (532) T ss_pred CC Confidence 21 No 251 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=82.57 E-value=0.076 Score=26.73 Aligned_cols=418 Identities=11% Similarity=0.000 Sum_probs=145.3 Q ss_pred Cch-------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGF-------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) |.= |+++..+.. .....-.+-...+.+..+........-.....+. ++...|++.+|..+. T Consensus 1 m~~~~~~~~~~~~~~r~~~l~~~R~-----~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~d-st~~~a~~~Laa~l~ 74 (536) T protein:vir:10 1 MAEKRTGLAEDGAKSVYERLKNDRA-----PYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQ-AVGARGLNNLASKLM 74 (536) T ss_pred CcchhhchhHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhcccccCCCCCccccccccccc-ccHHHHHHHHHHHHH Confidence 221 111111100 0000000001111111111111000000112233 344445555555553 Q ss_pred -cC-c---eEEEEeccCceee-----e-----------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec Q lcl|Aclame:pro 68 -TL-P---LSTYSKRGGTRKE-----I-----------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA 126 (457) Q Consensus 68 -~~-p---~~~~~~~~~~~~~-----~-----------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~ 126 (457) .+ | |-=....+..... . ....++..+.+.| ++.-+..++.+++.+|++.+++..+ T Consensus 75 ~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~ly~~e~ 150 (536) T protein:vir:10 75 LALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNS----YRVTLFEALKQLVVAGNVLLYLPEP 150 (536) T ss_pred hhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCcEeEEEeeC Confidence 22 3 3111111100000 0 0112222333333 3444556678888999999998765 Q ss_pred C-CceeEEEEeccceeEEEEcCCCccccee------------------------------eEEEEEee-ecccceeE--- Q lcl|Aclame:pro 127 G-PNIAGLDVLDPTKIHVHMVMVDGLRRKV------------------------------FEAYDIDA-DGNEVLLG--- 171 (457) Q Consensus 127 ~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~------------------------------~~~y~~~~-~~~~~~~~--- 171 (457) . +....+..+|..++.+.++..+.+...+ ...|.... ...+.... T Consensus 151 ~~~~~~~~~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~~~ 230 (536) T protein:vir:10 151 EGSNYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASGEYLRYE 230 (536) T ss_pred CCCceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCCcEEEEE Confidence 4 3333344444455655555444221100 00110000 00000000 Q ss_pred --------------EeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 172 --------------WFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 172 --------------~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|...-.+..|.....+..||.||.+.+...+.....+.+...........|...+..+....+.. T Consensus 231 e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~ 310 (536) T protein:vir:10 231 EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAGITQPRR 310 (536) T ss_pred eecCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcccccchhh Confidence 111223345555555567899999999999999999998888887666666666555333322221 Q ss_pred HHHHHHHHHHHhccccccCcc-eeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) .. .+.+ |.+ .-..+.+...++...+.-.-..+..+.....|..+|-+.. +... ++...++.--. T Consensus 311 ~~-----------~~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--l~~~-~~~r~TAtEV~ 375 (536) T protein:vir:10 311 LT-----------KAQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNS--AVQR-TGERVTAEEIR 375 (536) T ss_pred hc-----------cCCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhh--cccC-CCCCccHHHHH Confidence 11 1111 111 1122333444554333322234556777888988885442 2111 22222221111 Q ss_pred HHHHHHHHHHhhHHHHHHHHH-------------HhhhcCccccccceEEE--ecchhhh-ccHHHHHHHHHHHHhCC-- Q lcl|Aclame:pro 317 QNIAFTMFSLRPWLERIEAGF-------------NRLLFAETADRFRFVKF--NLDEIKR-GAPKERMELWSLGLQNG-- 378 (457) Q Consensus 317 ~~~~~~~~~l~P~~~~ie~~l-------------~~~ll~~~~~~~~~~~f--~~~~~~~-~d~~~~~~~~~~~~~~g-- 378 (457) .+..-....|.|....+.++| ...+|++.........+ -+..+-+ .+.+....++..+-+.+ T Consensus 376 ~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~P~ 455 (536) T protein:vir:10 376 YVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPM 455 (536) T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchh Confidence 222222333444444444443 23344433222222222 1111111 11122222222111111 Q ss_pred ----CcCHHHHH----HHhCCCCCCCCCCceeeeccccccccccccccc-----ccC-CCccCCCCCCCCCCCC--cccC Q lcl|Aclame:pro 379 ----IYSIDEVR----AAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEP-----APA-PPAIDPPAEEPADDEE--PDNA 442 (457) Q Consensus 379 ----~~T~nE~R----~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~--~~~~ 442 (457) .+..+++- +.+|.+|.. .+..+--+..+-..-..+. +.+ ..+.........+... .++. T Consensus 456 ~ld~~id~d~~~~~~a~~~Gv~p~~-----~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (536) T protein:vir:10 456 RDDPDINLAMIKLRIANAIGIDTSG-----ILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSV 530 (536) T ss_pred hhcccCCHHHHHHHHHHHcCCCchh-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhcc Confidence 12333322 234543310 0110000000000000000 000 0000000000000000 0000 Q ss_pred CCCccccc Q lcl|Aclame:pro 443 EGDPDEGE 450 (457) Q Consensus 443 ~~~~~~~~ 450 (457) . .+.+- T Consensus 531 g--~~~~~ 536 (536) T protein:vir:10 531 G--LQPGI 536 (536) T ss_pred c--cCCCC Confidence 0 00000 No 252 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=81.36 E-value=0.086 Score=26.42 Aligned_cols=418 Identities=11% Similarity=0.001 Sum_probs=145.6 Q ss_pred Cch-------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGF-------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA 67 (457) Q Consensus 1 Mg~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia 67 (457) |.= |+++..+.. .....-.+-...+.+..+........-.....+. ++...|++.+|..+. T Consensus 1 m~~~~~~~~~~~~~~r~~~lk~~R~-----~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~d-st~~~a~~~Laa~l~ 74 (536) T protein:vir:21 1 MAEKRTGLAEDGAKSVYERLKNDRA-----PYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQ-AVGARGLNNLASKLM 74 (536) T ss_pred CcchhhchhHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhcccccCCCCCccccccccccc-ccHHHHHHHHHHHHH Confidence 221 111111100 0000000001111111111111000000112233 344445555555553 Q ss_pred -cC-c---eEEEEeccCceee-e---------------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec Q lcl|Aclame:pro 68 -TL-P---LSTYSKRGGTRKE-I---------------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA 126 (457) Q Consensus 68 -~~-p---~~~~~~~~~~~~~-~---------------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~ 126 (457) .+ | |-=....+..... . ....++..+.+.| ++.-+..++.+++.+|++.+++..+ T Consensus 75 ~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~ly~~e~ 150 (536) T protein:vir:21 75 LALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNS----YRVTLFEALKQLVVAGNVLLYLPEP 150 (536) T ss_pred HhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCcEeEEEeeC Confidence 32 3 3111111100000 0 0112222333333 3444556678888999999998765 Q ss_pred C-CceeEEEEeccceeEEEEcCCCccccee------------------------------eEEEEEeeec-ccceeE--- Q lcl|Aclame:pro 127 G-PNIAGLDVLDPTKIHVHMVMVDGLRRKV------------------------------FEAYDIDADG-NEVLLG--- 171 (457) Q Consensus 127 ~-g~~~~~~~l~p~~v~~~~~~~~~~~~~~------------------------------~~~y~~~~~~-~~~~~~--- 171 (457) . +....+..+|..++.+.++..+.+...+ ...|...... .+.... T Consensus 151 ~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~ 230 (536) T protein:vir:21 151 EGSNYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGEYLRYE 230 (536) T ss_pred CCCceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCCcEEEEe Confidence 4 3333344444456655555544221100 0011000000 000000 Q ss_pred --------------EeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHH Q lcl|Aclame:pro 172 --------------WFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEG 237 (457) Q Consensus 172 --------------~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 237 (457) .|...-.+..|.....+..||.||.+.+...+.....+.+...........|...+..+....+.. T Consensus 231 e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~ 310 (536) T protein:vir:21 231 EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAGITQPRR 310 (536) T ss_pred ccCCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcccccchhh Confidence 011223345555555567899999999999999999998888887666666666555333322221 Q ss_pred HHHHHHHHHHHhccccccCcc-eeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHH Q lcl|Aclame:pro 238 LARAREAWRAANSGVDNAHRV-ALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) Q Consensus 238 ~~~~~~~~~~~~~~~~n~~~~-~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~ 316 (457) .. .+.+ |.+ .-..+.+...++...+.-.-..+..+.....|..+|-+.. +... ++...++.--. T Consensus 311 ~~-----------~~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--l~~~-~~~r~TAtEV~ 375 (536) T protein:vir:21 311 LT-----------KAQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNS--AVQR-TGERVTAEEIR 375 (536) T ss_pred hc-----------cCCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhh--cccC-CCCCccHHHHH Confidence 11 1111 111 1122333444554333322234556777888988885442 2111 22222221111 Q ss_pred HHHH------------HHHHHHhhHHHHHHHHH-HhhhcCccccccceEEE--ecchhhh-ccHHHHHHHHHHHHhCC-- Q lcl|Aclame:pro 317 QNIA------------FTMFSLRPWLERIEAGF-NRLLFAETADRFRFVKF--NLDEIKR-GAPKERMELWSLGLQNG-- 378 (457) Q Consensus 317 ~~~~------------~~~~~l~P~~~~ie~~l-~~~ll~~~~~~~~~~~f--~~~~~~~-~d~~~~~~~~~~~~~~g-- 378 (457) .+.. +...-+.|++.+.-..+ ...+|++.........+ -+..+-+ .+.+....++..+-+.+ T Consensus 376 ~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~Pe 455 (536) T protein:vir:21 376 YVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPM 455 (536) T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchh Confidence 2222 33344445444433332 23344433222222222 1111111 11122222222111111 Q ss_pred ----CcCHHHH----HHHhCCCCCCCCCCceeeecccccccccccccccccC------CCccCCCCCCCCCCCC--cccC Q lcl|Aclame:pro 379 ----IYSIDEV----RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA------PPAIDPPAEEPADDEE--PDNA 442 (457) Q Consensus 379 ----~~T~nE~----R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~ 442 (457) .+..+++ -+.+|.+|.. .+..+--+..+-..-..+.+.. ..+.........+... .++. T Consensus 456 ~ld~~id~d~~~~~~a~~~Gv~p~~-----~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (536) T protein:vir:21 456 RDDPDINLAMIKLRIANAIGIDTSG-----ILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSV 530 (536) T ss_pred hhcccCCHHHHHHHHHHHcCCChhh-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHhhhhcc Confidence 1233332 2234553310 0110000000000000000000 0000000000000000 0000 Q ss_pred CCCccccc Q lcl|Aclame:pro 443 EGDPDEGE 450 (457) Q Consensus 443 ~~~~~~~~ 450 (457) . .+.+- T Consensus 531 g--~~~~~ 536 (536) T protein:vir:21 531 G--LQPGI 536 (536) T ss_pred c--cCCCC Confidence 0 00000 No 253 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=80.46 E-value=0.095 Score=26.20 Aligned_cols=383 Identities=15% Similarity=0.124 Sum_probs=152.8 Q ss_pred Cchhhhhhcccccccccccccccccccchhhh-----------cccccccCccc-cCHHHHhc----cHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIY-----------NLGATASSGER-VTPHDALQ----VSAVFASVRLLSE 64 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-v~~~~~~~----~~~v~~~i~~ia~ 64 (457) |++-.+ .+.=.+... .|........ .+.-+ .+.. -..+..++ .+++...++.++. T Consensus 1 m~V~~~---hp~y~a~~~----~W~~~rd~~~G~~~~r~~g~~YLpk~--~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G 71 (452) T protein:vir:94 1 MPIETK---HPEYLAYEN----DWIDCRVASLGQREVKKKGVRFLPKL--SGQTDDMYNAYKQRALFYSITSKTLSALSG 71 (452) T ss_pred CCCCCc---CHHHHHHHH----HHHHHHHHhcChHHHHcCCcccCCCC--CCCCHHHHHHHHhhccCCchHHHHHHHHhc Confidence 664321 000000000 0000000000 00000 0000 01122233 4555566666665 Q ss_pred hhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCceeEEEEeccceeEE Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHV 143 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~-~g~~~~~~~l~p~~v~~ 143 (457) .+-+-|..+- ..+.+..++. -....+-.+|.+.++...+.+|.+++.+-.. .|...-+..+.|..|.= T Consensus 72 ~vf~k~p~~~----------~p~~l~~~~~-D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~ 140 (452) T protein:vir:94 72 MVLDQPPVIT----------HPDAMSKYFE-DQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILN 140 (452) T ss_pred hhhcCCceec----------ccHHHHHHHh-cccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcC Confidence 5555554331 0112222221 1345677899999999999999999988654 23322334444443321 Q ss_pred E-------------------EcCCCcccceeeEEEEEee-ecccceeEEec---------cc-----------eEEEec- Q lcl|Aclame:pro 144 H-------------------MVMVDGLRRKVFEAYDIDA-DGNEVLLGWFT---------PR-----------DVLHIP- 182 (457) Q Consensus 144 ~-------------------~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~---------~~-----------evih~~- 182 (457) + .+..+.+.......|+.-. ..+......+. .. ..|-+- T Consensus 141 W~~~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~ 220 (452) T protein:vir:94 141 WEEDEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFC 220 (452) T ss_pred ccccccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEE Confidence 1 1111111111111111100 00000000000 00 111111 Q ss_pred -cCCccCCccccchhHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHHhccccccCccee Q lcl|Aclame:pro 183 -GMMLPGDFVGCSPISYARES-IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVAL 260 (457) Q Consensus 183 -~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~v 260 (457) +....+...|.||+..+... +..+..... ....+...+.|..++......+ ....| ++.++. T Consensus 221 ~~~~~~~~~~~~pPLl~LA~ln~~hy~~~sd-~~~~l~~~~~P~l~~~g~~~~~------------~i~iG---~~~~~~ 284 (452) T protein:vir:94 221 ITPSGLSMTPAKPPMIDIVDINYSHYRTSAD-LEHGRHFTGLPTPWITGAESQS------------TMHIG---STKAWV 284 (452) T ss_pred EcCCCCCCCCCccchHHHHHHHHHHhcchhH-HHHHHHHcccceeEeecCcCCC------------ceEec---cccccc Confidence 11122345788888766544 333333333 3344556677877776432211 01223 344567 Q ss_pred ccC-cceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 261 LTE-GAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN 338 (457) Q Consensus 261 l~~-g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~ 338 (457) +++ |.++.-+..+..-.. ..+.++...+++..+ |. .++-....+..++. .......-.+..|.-++..+|+.++ T Consensus 285 lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~~-Ga--~ll~~~~~~~~s~e-a~~~~~~~~~s~L~~~a~~~e~al~ 360 (452) T protein:vir:94 285 IPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLASL-SA--RLIDNSTRGSEATE-TVKLRYMSETASLKSVTRAVEALLN 360 (452) T ss_pred CCCCCCcceEEccCchhHHHHHHHHHHHHHHHHHH-HH--HhhccCCCcchHHH-HHHHHHHHhhHHHHHHHHHHHHHHH Confidence 774 655544444433221 123333333333221 11 22211111111111 1112222335677778888888887 Q ss_pred hhh--cCccc-c-ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCceeeeccccccc Q lcl|Aclame:pro 339 RLL--FAETA-D-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---DMTPLPDGLGEKYRVPLNLGEI 411 (457) Q Consensus 339 ~~l--l~~~~-~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~~~~gd~~~~~~n~~~~ 411 (457) +.| ...+. . ....+..+.+...........+++.+++..|.++...+++.+ |....+. +.-.+ + T Consensus 361 ~~l~~~a~w~g~~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~---e~~~i------~ 431 (452) T protein:vir:94 361 KAYSCIMDMESMGGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPG---ESMGV------I 431 (452) T ss_pred HHHHHHHHHcCCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCcc---CHHHH------H Confidence 544 11211 1 223444555544444445667777789999999998888877 4432221 11000 0 Q ss_pred ccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 412 GEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) +....+.+.+.. ++.++.++. T Consensus 432 ~E~~~~~~~~~~--------~~~~~~~~~ 452 (452) T protein:vir:94 432 PDPPAPEPSPSN--------TPPNPSSKA 452 (452) T ss_pred HHhhccCcccCC--------CCCCCccCC Confidence 111111111111 111111111 No 254 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=80.08 E-value=0.098 Score=26.11 Aligned_cols=388 Identities=8% Similarity=-0.025 Sum_probs=133.7 Q ss_pred Cchhhhh-----------hcccccccccccccccccccchhhh--------ccc---ccccCccccCHHHH-------hc Q lcl|Aclame:pro 1 MGFWSAL-----------FGRGHSPALDAAEGRAWEPYDPSIY--------NLG---ATASSGERVTPHDA-------LQ 51 (457) Q Consensus 1 Mg~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~v~~~~~-------~~ 51 (457) -.|.++| |.+... .....+.+++...... ... +.++....++.+.. .. T Consensus 28 ~~~e~~w~e~a~~~lP~~~~~~~~---~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~ 104 (516) T protein:vir:96 28 SSFLDRAKHYSKLTLPYLMNDKGD---NETSQNGWQGVGAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLK 104 (516) T ss_pred hHHHHHHHHHHHhhcccccCCCCC---ccccCCcccchHHHHHHHHHHHHHhhhcCCCCcccccccChhHHhhccccCch Confidence 1111111 100000 0000111221111100 000 00111111111110 01 Q ss_pred cHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCcee Q lcl|Aclame:pro 52 VSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIA 131 (457) Q Consensus 52 ~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~ 131 (457) ...|..-...+.+. ++..+.+.| ++.-+-.++.++..+|++.+++..+. + . T Consensus 105 ~~~v~~~L~~ve~~-----------------------~~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~d~~~-~-~ 155 (516) T protein:vir:96 105 KTELATIFAQVETR-----------------------AMKELEQRQ----FRPAVVEAFKHLIVAGSCMLYKPSKG-A-I 155 (516) T ss_pred hHHHHHHHHHHHHH-----------------------HHHHHHhcC----cHHHHHHHHHHHHhHCeEeEEecCCC-C-E Confidence 11122111111111 111122222 33345556677788899887774332 2 2 Q ss_pred EEEEeccceeEEEEcCCCcccc--------------------------------eeeEEEEEeeecccceeEE------- Q lcl|Aclame:pro 132 GLDVLDPTKIHVHMVMVDGLRR--------------------------------KVFEAYDIDADGNEVLLGW------- 172 (457) Q Consensus 132 ~~~~l~p~~v~~~~~~~~~~~~--------------------------------~~~~~y~~~~~~~~~~~~~------- 172 (457) ..||| .++.+.++..+.+.. .....|............. T Consensus 156 ~~~pl--~~y~v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~~d~~ 233 (516) T protein:vir:96 156 SAIPM--HHYVVNRDTNGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKYLGDGFWELKQSADDI 233 (516) T ss_pred EEEEc--CeEEEeeCCCCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeeeeCCceeEEEEEeCce Confidence 34444 334444444432200 0001111111111110000 Q ss_pred ---------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 173 ---------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARARE 243 (457) Q Consensus 173 ---------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~ 243 (457) |...-.+-.|.....+..||.||.+-+...+.....+.+.......-...|.+++..+......... T Consensus 234 ~~~~es~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~l~---- 309 (516) T protein:vir:96 234 PVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTDVDHFV---- 309 (516) T ss_pred eeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCccccCcccccchhhhc---- Confidence 1111234444444556789999999999999999999998888877777777655543332222111 Q ss_pred HHHHHhccccccCcceeccCcceeeeccCC-hhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHH Q lcl|Aclame:pro 244 AWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF 321 (457) Q Consensus 244 ~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~ 321 (457) .+ .+ | .++-+..-++.++... ..+.+ ..+..+.....|..+|=+..... ......+. .--..+..- T Consensus 310 ------~~-~~-g-~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~--r~~~rvTA-tEV~~r~~E 377 (516) T protein:vir:96 310 ------NS-GT-G-EVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTR--RDAERVTA-VEIQRDALE 377 (516) T ss_pred ------cC-CC-c-eeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhcc--CCCccccH-HHHHHHHHH Confidence 11 11 1 2222222234444322 23333 34556777888888886543222 11111222 111222333 Q ss_pred HHHHHhhHHHHHHHHHHhhhcC----cccc--ccceEEEec----chhhhccHHHHHHHHHHHHhCCCc-CHHHHHHHhC Q lcl|Aclame:pro 322 TMFSLRPWLERIEAGFNRLLFA----ETAD--RFRFVKFNL----DEIKRGAPKERMELWSLGLQNGIY-SIDEVRAAED 390 (457) Q Consensus 322 ~~~~l~P~~~~ie~~l~~~ll~----~~~~--~~~~~~f~~----~~~~~~d~~~~~~~~~~~~~~g~~-T~nE~R~~~G 390 (457) ....|.|....+.++|-.-|+. .... ....++..+ ..+-+.-...........+.. ++ -+-++...++ T Consensus 378 ~~~~LGpv~~rl~~Ell~Pli~r~l~~~~p~lp~~~v~~~~vs~l~~l~r~~~~~~i~~~~~~i~~-~~~~~p~v~d~id 456 (516) T protein:vir:96 378 IEQNMGGVYSLFATTMQSPVAMWGLLEAGESFTSDLVDPVIITGIEALGRMAELDKLANFAQYMSL-PLQWPEPVLAAVK 456 (516) T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccceeechHHHHHHHHHHHHHHHHHHHHHH-HhcCChhHHhcCC Confidence 4555677777766665332221 0010 011111111 111111111111111111111 11 0122333333 Q ss_pred CCCCCCCCCceeeeccccccccccccc----ccccCC---Cc----cCCCCCCCCCCCCc Q lcl|Aclame:pro 391 MTPLPDGLGEKYRVPLNLGEIGEEPEP----EPAPAP---PA----IDPPAEEPADDEEP 439 (457) Q Consensus 391 ~~p~~~~~gd~~~~~~n~~~~~~~~~~----~~~~~~---~~----~~~~~~~~~~~~~~ 439 (457) ++.+-+..++.+-+|.++......... +...++ .+ ......-+.+.+|. T Consensus 457 ~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a~~~~~~~~~~~~~~~~~~ 516 (516) T protein:vir:96 457 WPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLEEGVAKAVPGVIQQELKEA 516 (516) T ss_pred HHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccccC Confidence 332222223333333332221111110 000000 00 00000000000000 No 255 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=77.23 E-value=0.13 Score=25.50 Aligned_cols=433 Identities=11% Similarity=0.044 Sum_probs=180.0 Q ss_pred Cchhhh-------hhcccccccccccccccccccchhhhcccccccCcccc--C-HHHHhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 1 MGFWSA-------LFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERV--T-PHDALQVSAVFASVRLLSETIATLP 70 (457) Q Consensus 1 Mg~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~~~~~~~v~~~i~~ia~~ia~~p 70 (457) |+-=.+ .|.-..+.-+..........+........+..+....+ . .+.-+..|.....|+.+++-+ +-+ T Consensus 1 m~~~~~q~~p~~~~fp~~~a~wV~~~D~~RlaaY~ly~d~y~n~~~el~~il~G~dr~~~~~ps~r~~V~~~~~~L-g~~ 79 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLRGGDDNIVDENDKNRVRAYDLYENIYLNSAETLKLVLRGDDSVPILMPSGRKIVEAVHRFL-GVG 79 (563) T ss_pred CCccccccCCCcccccccccccCCHHHHHHHHHHHHHHHhhcCchhhhhhhcCCCceeeeccchHHHHHHHHHHhc-CCC Confidence 554211 11111000000000000000000000011111100000 0 011122344455666666444 555 Q ss_pred eEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CceeEEEEeccceeEEEEc Q lcl|Aclame:pro 71 LSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG----PNIAGLDVLDPTKIHVHMV 146 (457) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~----g~~~~~~~l~p~~v~~~~~ 146 (457) +++......+.. .....+..+|...-..........+...+.++.|.+...+..+. |.-..+..++|.+...+.+ T Consensus 80 ~~~~Ve~~~~de-~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~rv~~vDP~~~fp~~d 158 (563) T protein:vir:74 80 FDYLVEPDMGDE-GIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERISVDEVDPRQIFLIED 158 (563) T ss_pred cEEecCccccCc-chHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCceEeecCCceeeeccC Confidence 555433222111 11122333444333333444455666777788888888887552 3344555666654433222 Q ss_pred CCCccc-----------------ceeeEE--EEEeeecccc----------------------eeEEe--ccc------- Q lcl|Aclame:pro 147 MVDGLR-----------------RKVFEA--YDIDADGNEV----------------------LLGWF--TPR------- 176 (457) Q Consensus 147 ~~~~~~-----------------~~~~~~--y~~~~~~~~~----------------------~~~~~--~~~------- 176 (457) .+.... ...... |.+.-+.... ....+ ..+ T Consensus 159 pd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~~~~~~~~~~~~~~ 238 (563) T protein:vir:74 159 GSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAISDEQARRKEQVRSAQH 238 (563) T ss_pred CCCcccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccchhhhcccchhhhhhh Confidence 211100 000000 0010000000 00000 001 Q ss_pred --------------eEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 177 --------------DVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAR 242 (457) Q Consensus 177 --------------evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~ 242 (457) -|+|++...+.+..+|.|-+.-+...+...+....-......-+|.|-.++......+. ...+. T Consensus 239 d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~d~-~~g~~- 316 (563) T protein:vir:74 239 DEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPVDP-NTGEL- 316 (563) T ss_pred hchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEecccccccc-ccccc- Confidence 16677777777889999999999998888877776666666667766666653322221 11111 Q ss_pred HHHHHHhccccccCcceeccC---cceeeeccCChhHHHHHHHHHHHHH-HHHHHhCCCHHHhcccccccc-ccchHHHH Q lcl|Aclame:pro 243 EAWRAANSGVDNAHRVALLTE---GAKFSKVAMSPDEAQFLQTRQFQVP-EIARIFGVPPHLISDATNSTS-WGSGLAEQ 317 (457) Q Consensus 243 ~~~~~~~~~~~n~~~~~vl~~---g~~~~~~~~s~~d~~~~e~~~~~~~-~Ia~~fgvpp~~lg~~~~~~~-~~~~~e~~ 317 (457) ..|+ - ..|.++-+++ +..+..++..++-..+..-++.... .|+..-++|..-+|....+.. |+... T Consensus 317 ~~w~---v---gpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~SGiAL--- 387 (563) T protein:vir:74 317 TDWN---I---GPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAESGISL--- 387 (563) T ss_pred cccc---c---CCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccccchhhh--- Confidence 1111 1 1355566653 2456777766555444444555554 678888999999994433332 33222 Q ss_pred HHHHHHHHHhhHHH--------------HHHHHHHhhhcCcccc-----------------ccceEEEecchhhhccHHH Q lcl|Aclame:pro 318 NIAFTMFSLRPWLE--------------RIEAGFNRLLFAETAD-----------------RFRFVKFNLDEIKRGAPKE 366 (457) Q Consensus 318 ~~~~~~~~l~P~~~--------------~ie~~l~~~ll~~~~~-----------------~~~~~~f~~~~~~~~d~~~ 366 (457) .-.|.|++. ++-..+.+.||+..++ ....+.+-+...+..|..+ T Consensus 388 -----eL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~ 462 (563) T protein:vir:74 388 -----ELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKTQ 462 (563) T ss_pred -----hhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHHH Confidence 222334333 1111122222211111 1122345577888999999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCceeeeccccccccccc-ccccccCCCccCCCCCCCCCCCCcccC Q lcl|Aclame:pro 367 RMELWSLGLQNGIYSIDEVRAAE---DMTPLPDGLGEKYRVPLNLGEIGEEP-EPEPAPAPPAIDPPAEEPADDEEPDNA 442 (457) Q Consensus 367 ~~~~~~~~~~~g~~T~nE~R~~~---G~~p~~~~~gd~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (457) ..+....++++|+++.-=+-+++ |++- |+ .+.-.....--.+...- ....+..+.+.....+.+-.+++.+.. T Consensus 463 vv~~~~tl~~aGiiSretAv~~L~~~g~~~-pd--ae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~~dd~ 539 (563) T protein:vir:74 463 VTQDTLLLQQAHLILRKMAVAKLRSIGWEY-PE--VDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQFDDQ 539 (563) T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhCCCCC-Cc--HHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCccccccc Confidence 99999999999999988776666 6542 11 11111100000000000 000000111111111111111110000 Q ss_pred CCCc------------ccccccccc Q lcl|Aclame:pro 443 EGDP------------DEGETEDDD 455 (457) Q Consensus 443 ~~~~------------~~~~~~~~~ 455 (457) +.+ +..+--=+- T Consensus 540 -g~p~~~~~~~~~~~~~~~~~~~~~ 563 (563) T protein:vir:74 540 -GNPIDQFGNPVEIPPDVTQVPLSP 563 (563) T ss_pred -CCchhHcCCcccCCccccccCCCC Confidence 000 000000000 No 256 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=77.09 E-value=0.13 Score=25.47 Aligned_cols=401 Identities=14% Similarity=0.010 Sum_probs=140.5 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc-cC-----ce-EE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TL-----PL-ST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~-----p~-~~ 73 (457) |.=. +..+.++-+.+.....-.+-...+.+..+..............+ .++...|++.+|..+. .+ || ++ T Consensus 1 mk~~--~~~~~~~lkr~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~l 77 (510) T protein:vir:78 1 MKST--AAMLWEKLRDGSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDF-QSAGALLVNNLAAKLARSLFPTGIPFFRS 77 (510) T ss_pred ChhH--HHHHHHHHhccchHHHHHHHHHhhccccccCCCCcccccccCcc-cchHHHHHHHHHHHHHHhhcCCCCccccc Confidence 3221 11111111111111110011111111111111101000001122 3344456666665553 22 33 22 Q ss_pred EEeccCceeee---------cC-------cchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 74 YSKRGGTRKEI---------DT-------PEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 74 ~~~~~~~~~~~---------~~-------~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) .. .+...... .. ..++..+.+. +++.-+-.++.++..+|++.+++..++++ ...||| T Consensus 78 ~~-~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~~-~~~~pl- 150 (510) T protein:vir:78 78 EL-TDAIRREADSRDTDITEVTAALARVDRKATQRLFQN----ASLAVLTQVIKLLIVTGNALLYRNSDEAT-VVAWSL- 150 (510) T ss_pred CC-ChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCeEEEEEeCCCCe-EEEEEc- Confidence 11 11100000 00 0111122222 33444566677888999998887655443 344555 Q ss_pred cceeEEEEcCCCcccce------------------------------eeEEEEEeeecccc----eeE------------ Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRK------------------------------VFEAYDIDADGNEV----LLG------------ 171 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~------------------------------~~~~y~~~~~~~~~----~~~------------ 171 (457) .++.+.++..+.+... ....|......... ... T Consensus 151 -~~y~v~~d~~G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~sv~~e~dg~~i~~~ 229 (510) T protein:vir:78 151 -RSYAVRRDATGRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYTHVQRRKGTAMDYAEMYHEIDGVRVGET 229 (510) T ss_pred -ceeEEeeCCCcCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEEEEEeecCCCCcEEEEEEEecCeeeccc Confidence 4444444444332100 00011100000000 000 Q ss_pred -E--eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 172 -W--FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAA 248 (457) Q Consensus 172 -~--~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 248 (457) . |...-.+-.|.....+..||.||.+.+...+.....+.+...........|.+++..+....+... T Consensus 230 ~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~~~~l---------- 299 (510) T protein:vir:78 230 GRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAVVDDY---------- 299 (510) T ss_pred cccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCccccchhhh---------- Confidence 0 011122333444445678999999999999999999999888877777777766554333222211 Q ss_pred hccccccCcceeccCcceeeeccC-ChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH-HHHHHHHHHH Q lcl|Aclame:pro 249 NSGVDNAHRVALLTEGAKFSKVAM-SPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA-EQNIAFTMFS 325 (457) Q Consensus 249 ~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e-~~~~~~~~~~ 325 (457) ..+.+ +.++-+..-++.++.. +..+.+ ..+..+.....|..+|=+. +. ..++..-++ .| ..+..-.... T Consensus 300 -~~~~~--g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~~~---l~-~~~~~rvTA-tEV~~r~~E~~~~ 371 (510) T protein:vir:78 300 -QDAEM--GDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYG---AN-QRDAERVTA-EEVRITAEEAENT 371 (510) T ss_pred -ccCCC--ceeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHHhhc---cc-cCCCCCcCH-HHHHHHHHHHHHH Confidence 11111 1122222223444432 223333 3455677778888887321 11 112222222 12 1111222333 Q ss_pred HhhHHHHHHHHH------------Hhh-hcCccccccceEEE-ecchhhhccHHHHHHHHHHHHh-CCC-------cCHH Q lcl|Aclame:pro 326 LRPWLERIEAGF------------NRL-LFAETADRFRFVKF-NLDEIKRGAPKERMELWSLGLQ-NGI-------YSID 383 (457) Q Consensus 326 l~P~~~~ie~~l------------~~~-ll~~~~~~~~~~~f-~~~~~~~~d~~~~~~~~~~~~~-~g~-------~T~n 383 (457) |.|....+.++| .+. +++.-.....-... .++.+-+.-.......+...++ .+. +..+ T Consensus 372 LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~~q~~~~id~d 451 (510) T protein:vir:78 372 LGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLP 451 (510) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccceeeecccHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCHH Confidence 444444444443 222 22222111111112 2233333222222222222221 111 2222 Q ss_pred H----HHHHhCCCCCCCCCCceeeecccccccccccccccccC--------CCccCCCCCCCCC Q lcl|Aclame:pro 384 E----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA--------PPAIDPPAEEPAD 435 (457) Q Consensus 384 E----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 435 (457) + +.+.+|.+|.. .+..+-.+..+...-..+.+.. +.+.+..+...+- T Consensus 452 ~~~~~~a~~~Gv~p~~-----ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~g~ 510 (510) T protein:vir:78 452 KMMDTIWAAFSVDTSQ-----FYKSADELQAEAEEQRRQAAQAQAAQETLLEGASDMTNALAGV 510 (510) T ss_pred HHHHHHHHHhCCChhh-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC Confidence 2 33345543310 0111100000000000000000 0000001111111 No 257 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=77.05 E-value=0.13 Score=25.46 Aligned_cols=419 Identities=13% Similarity=0.037 Sum_probs=147.8 Q ss_pred Cc-----hhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc-cC----- Q lcl|Aclame:pro 1 MG-----FWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TL----- 69 (457) Q Consensus 1 Mg-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~----- 69 (457) |- -|+++..+.. .....-.+-...+.+..+........-.....+. ++...|++.+|..+. .+ T Consensus 1 m~~~~~~r~~~l~~~R~-----~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~d-st~~~a~~~Laa~l~~~ltpp~~ 74 (555) T protein:vir:17 1 MKHSAQAKYMMLRADRE-----DYLDSGRQSARLTLPYILTDEGHVQGGYLPTPWQ-SVGSKGVNVLASKLMLSLFPVNT 74 (555) T ss_pred ChhHHHHHHHHHHHHhh-----HHHHHHHHHHHHhcccccCCCCCccccccccccc-ccHHHHHHHHHHHHHHhhcCCCC Confidence 33 1222211110 0000000001111111111100000000112232 333456666665553 22 Q ss_pred ce-EEEEeccCceee--------e-------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEE Q lcl|Aclame:pro 70 PL-STYSKRGGTRKE--------I-------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGL 133 (457) Q Consensus 70 p~-~~~~~~~~~~~~--------~-------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~ 133 (457) || ++......-... . ....++..+.+-| ++.-+-.++.++..+|++++++..+.. .. T Consensus 75 ~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~ly~~~~~~---~~ 147 (555) T protein:vir:17 75 SFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESS----DRVHLEMAMKHLIVTGNALLYQGKKNL---KL 147 (555) T ss_pred cccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCeEEEEecCCce---eE Confidence 33 222111000000 0 0011122222333 444556667888999999988755432 23 Q ss_pred EEeccceeEEEEcCCCcccceeeE---------------------------------------------------EEE-- Q lcl|Aclame:pro 134 DVLDPTKIHVHMVMVDGLRRKVFE---------------------------------------------------AYD-- 160 (457) Q Consensus 134 ~~l~p~~v~~~~~~~~~~~~~~~~---------------------------------------------------~y~-- 160 (457) +|| .++.+.++..+.+...+.. .|. T Consensus 148 ~pl--~~y~v~~d~~G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~t~~ 225 (555) T protein:vir:17 148 YPL--DRFVVSRDGEGNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDALVYTYV 225 (555) T ss_pred EEc--CeEEEeeCCCcCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcceeEeecc Confidence 444 4444444444433211100 000 Q ss_pred ---------Eeeecccce-----eEEeccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceE Q lcl|Aclame:pro 161 ---------IDADGNEVL-----LGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAV 226 (457) Q Consensus 161 ---------~~~~~~~~~-----~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~ 226 (457) +....+... ...|...-.+..|.....+..||.||.+.+...+.....+.+...........|.++ T Consensus 226 ~~~~~~~~~~~e~~~~~v~~~l~e~g~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~l 305 (555) T protein:vir:17 226 CRKDGQVKWHQECDGKVIPGSNSSAPYTHNPWIPLRFNIVDGEAYGRGRVEEFMGDLKSLEALSQAMVEGSAASAKVVFM 305 (555) T ss_pred cccCCeeEEEEecCceeccccccccCcccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee Confidence 000000000 001111233555555556778999999999999999999999999988888888887 Q ss_pred EecCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccC-ChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccc Q lcl|Aclame:pro 227 VEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAM-SPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDA 304 (457) Q Consensus 227 ~~~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~ 304 (457) +..+....+.... .++ .+.++.+..-++.++.. ++.+.+ ..+..+.....|-.+|-+ ++. T Consensus 306 v~~~g~~~~~~l~----------~~~---~g~v~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~aFm~----~~~- 367 (555) T protein:vir:17 306 VSPSATTKPQNLA----------LAA---NGAIIQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISDAFLM----LQV- 367 (555) T ss_pred eccccccCcceee----------cCC---CceeecCCcccceeeeccccchhhHHHHHHHHHHHHHHHHHhh----cCC- Confidence 7655443332111 111 12223222233444432 233444 234455566777777753 222 Q ss_pred cccccccchHHHHHHHHHHHHHhhHHHHHHHHHH-------------hhhcCccccc--cceEEEecchhhh-ccHHHHH Q lcl|Aclame:pro 305 TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN-------------RLLFAETADR--FRFVKFNLDEIKR-GAPKERM 368 (457) Q Consensus 305 ~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~-------------~~ll~~~~~~--~~~~~f~~~~~~~-~d~~~~~ 368 (457) .++..-++.--..+..-....|.|....+.++|- ..+|++.... ...+..-+..+.+ .+..... T Consensus 368 ~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~~v~~~i~~~l~~l~r~~~~~~l~ 447 (555) T protein:vir:17 368 RQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRKLPQLPKDLVQPTVVAGLWGVGRGQDKQQLM 447 (555) T ss_pred CCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHhhhccceeehHHHHHHHHHHHHHH Confidence 2222222211112222233444444444444432 2234433222 1122222222322 2222222 Q ss_pred HHHHHHHhCC-------CcCHHH----HHHHhCCCCCCCCCCceeeeccccccccccccc---------c-cccCCCccC Q lcl|Aclame:pro 369 ELWSLGLQNG-------IYSIDE----VRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEP---------E-PAPAPPAID 427 (457) Q Consensus 369 ~~~~~~~~~g-------~~T~nE----~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~---------~-~~~~~~~~~ 427 (457) .++..+.+.+ .+..++ +-+.+|.+|.. .+..+--...+.+.... + .+..+.... T Consensus 448 ~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~-----ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~ 522 (555) T protein:vir:17 448 EFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQ-----LINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMA 522 (555) T ss_pred HHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhh-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh Confidence 3333322221 122222 33345554421 11100000000000000 0 000000000 Q ss_pred CCC--CCCCCCCCcccCCCCccccccccc-cCC Q lcl|Aclame:pro 428 PPA--EEPADDEEPDNAEGDPDEGETEDD-DDA 457 (457) Q Consensus 428 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 457 (457) +.. .-..+.........-..++...+. -.| T Consensus 523 ~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~~ 555 (555) T protein:vir:17 523 EQAMQLIQQQQEGAQDAGAAESETSSAEAQAGA 555 (555) T ss_pred hhHHhccccchhhhhHHHHHHhhcCCcccccCC Confidence 000 000000000000000000000000 000 No 258 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=75.48 E-value=0.15 Score=25.16 Aligned_cols=401 Identities=13% Similarity=0.024 Sum_probs=139.6 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc-cC-----ce-EE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TL-----PL-ST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~-----p~-~~ 73 (457) |. +.+.++.+.-+.......-.+-...+.+..+........-.....+ .++...|++.+|..+. .+ || ++ T Consensus 1 mk--~~~~~~~~~lkR~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~l 77 (510) T protein:vir:63 1 MK--TTAAMLWEKLRDGSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDF-QSAGALLVNNLAAKLARSLFPTGIPFFRS 77 (510) T ss_pred Ch--hHHHHHHHHHhccchHHHHHHHHHhhccccCCCCCCccccccCCCc-cchHHHHHHHHHHHHHhhhcCCCCccccc Confidence 22 2221221111111111110011111111111111101010111122 3444556666665553 22 33 22 Q ss_pred EEeccCceeee--------cCc--------chhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEec Q lcl|Aclame:pro 74 YSKRGGTRKEI--------DTP--------EWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLD 137 (457) Q Consensus 74 ~~~~~~~~~~~--------~~~--------~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~ 137 (457) .. .+...... +.. .++..+.+. +++.-+-.++.++..+|++.+++..++. ....+|| T Consensus 78 ~~-~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~Li~~G~a~l~~~~~~~-~~~~~pl- 150 (510) T protein:vir:63 78 EL-TDAIRREADSRDTDITEVTAALARVDRKATQRLFQN----ASLAVLTQVIKLLIVTGNALLYRDSDAA-TVVAWSL- 150 (510) T ss_pred CC-ChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCeEEEEEcCCCc-EEEEEEc- Confidence 11 11000000 001 112222232 3444456667788999999888765433 2334444 Q ss_pred cceeEEEEcCCCcccce------------------------------eeEEEEEeeeccc--ce--eEE----------- Q lcl|Aclame:pro 138 PTKIHVHMVMVDGLRRK------------------------------VFEAYDIDADGNE--VL--LGW----------- 172 (457) Q Consensus 138 p~~v~~~~~~~~~~~~~------------------------------~~~~y~~~~~~~~--~~--~~~----------- 172 (457) .++.+.++..+.+... ....|.......+ .. ... T Consensus 151 -~~y~v~~d~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~sv~~e~dg~~~~~~ 229 (510) T protein:vir:63 151 -RSYAVRRDATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTHVQRKKGTAMEYAELYHEIDGVRVGKE 229 (510) T ss_pred -ceeEEeeCCCcCeeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEEEEeecCCCceEEEEEEEecCceeccc Confidence 3444444444322100 0001111000000 00 001 Q ss_pred ----eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 173 ----FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAA 248 (457) Q Consensus 173 ----~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 248 (457) |...-.+-.|.....+..||.||.+.+...+.....+.+...........|.+++..+....+... T Consensus 230 ~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~~~~~---------- 299 (510) T protein:vir:63 230 GRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAVVDDY---------- 299 (510) T ss_pred cccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCcccccchhhh---------- Confidence 111123333444445678999999999999999999999988887777777766654333222211 Q ss_pred hccccccCcceeccCcceeeeccC-ChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH-HHHHHHHHHH Q lcl|Aclame:pro 249 NSGVDNAHRVALLTEGAKFSKVAM-SPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA-EQNIAFTMFS 325 (457) Q Consensus 249 ~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e-~~~~~~~~~~ 325 (457) ..+.+ |.+ +-+..-++.++.. +..+.+ ..+..+.....|..+|=+. +. ..++..-++ .| ..+..-.... T Consensus 300 -~~~~~-g~~-v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~---l~-~~~~~rvTA-tEV~~r~~E~~~~ 371 (510) T protein:vir:63 300 -QDAEM-GDY-VPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYG---AN-QRDAERVTA-EEVRITAEEAENT 371 (510) T ss_pred -ccCCC-cee-ecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHHhh---cc-cCCCCCcCH-HHHHHHHHHHHHH Confidence 11111 111 2111122333332 223333 3455677778888888221 21 112222222 12 1111222333 Q ss_pred HhhHHHHHHHHH------------Hhh-hcCccccccceEEEe-cchhhhccHHHHHHHHHHHHh-CC-------CcCHH Q lcl|Aclame:pro 326 LRPWLERIEAGF------------NRL-LFAETADRFRFVKFN-LDEIKRGAPKERMELWSLGLQ-NG-------IYSID 383 (457) Q Consensus 326 l~P~~~~ie~~l------------~~~-ll~~~~~~~~~~~f~-~~~~~~~d~~~~~~~~~~~~~-~g-------~~T~n 383 (457) |.|....+.++| .+. |++.-.....-.... ++.+-+.-.......+...++ .+ .+..+ T Consensus 372 LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~aq~~~~id~d 451 (510) T protein:vir:63 372 LGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLP 451 (510) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhcccceecchhHHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHH Confidence 444444444443 222 222111111111111 222222211121221111111 11 11222 Q ss_pred ----HHHHHhCCCCCCCCCCceeeecccccccccccccccccC--------CCccCCCCCCCCC Q lcl|Aclame:pro 384 ----EVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA--------PPAIDPPAEEPAD 435 (457) Q Consensus 384 ----E~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 435 (457) ++.+.+|.+|.. .+..+-....+......+.+.+ +++....+..-+. T Consensus 452 ~~~~~~a~~~Gv~p~~-----ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~~~~~~~~g~ 510 (510) T protein:vir:63 452 KMMDTIWAAFSVDTSQ-----FYKSADELQAEAEQQRQQAAQAQAAQETLLEGASDMTNALAGV 510 (510) T ss_pred HHHHHHHHHhCCChhH-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC Confidence 233345554310 0110000000000000000000 0000000000000 No 259 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=72.40 E-value=0.18 Score=24.62 Aligned_cols=412 Identities=12% Similarity=0.064 Sum_probs=157.2 Q ss_pred Cch--hh---hhhcccccc-------------cc-ccccccc-cc-ccchhhhccccccc---Ccc---------cc-CH Q lcl|Aclame:pro 1 MGF--WS---ALFGRGHSP-------------AL-DAAEGRA-WE-PYDPSIYNLGATAS---SGE---------RV-TP 46 (457) Q Consensus 1 Mg~--~~---~l~~~~~~~-------------~~-~~~~~~~-~~-~~~~~~~~~~~~~~---~~~---------~v-~~ 46 (457) |.| |+ .|-+. .+. +. ....+.. .+ +......+..+... .+. .+ .. T Consensus 1 m~~~~L~~~~~w~~~-de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~Y 79 (524) T protein:vir:72 1 MKFNVLSLFAPWAKM-DERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTY 79 (524) T ss_pred CCCchhhHhhccccC-cchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHH Confidence 665 32 22111 110 00 0000000 00 00000000111000 000 01 23 Q ss_pred HHHhccHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 47 HDALQVSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGN 118 (457) Q Consensus 47 ~~~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~ 118 (457) +..+.+|.|..||+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+.... -..++..|.+.|. T Consensus 80 R~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgR 155 (524) T protein:vir:72 80 RNLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRK----GSDHFRRWYVDSR 155 (524) T ss_pred HHHhhccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeE Confidence 45667999999999999887533 2333221111 0000111112222221222222 3345566778899 Q ss_pred eEEEEEec----CCceeEEEEeccceeEEEEcCC----Ccccc----eeeEEEEEeee--------cccceeEEeccceE Q lcl|Aclame:pro 119 AFLAVRWA----GPNIAGLDVLDPTKIHVHMVMV----DGLRR----KVFEAYDIDAD--------GNEVLLGWFTPRDV 178 (457) Q Consensus 119 ~~~~i~~~----~g~~~~~~~l~p~~v~~~~~~~----~~~~~----~~~~~y~~~~~--------~~~~~~~~~~~~ev 178 (457) .|.-++-+ ..+..++..|+|..++.++... .+... ..+..|..... ...+....++.+-| T Consensus 156 i~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI 235 (524) T protein:vir:72 156 IFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAV 235 (524) T ss_pred EEEEEEEeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhhe Confidence 88876543 3689999999999997644332 11110 01112211110 01122334555554 Q ss_pred EEeccCCc--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc---- Q lcl|Aclame:pro 179 LHIPGMML--PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG---- 251 (457) Q Consensus 179 ih~~~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---- 251 (457) .|.. ... .++..=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. T Consensus 236 ~y~h-SGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvY 314 (524) T protein:vir:72 236 VYAH-SGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVY 314 (524) T ss_pred eeee-ccceeCCCCceeccchhhhHhHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEE Confidence 4443 222 2333446777777777776666666555443333443444444322 2222233333333322211 Q ss_pred ccccCcc------ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccc-- Q lcl|Aclame:pro 252 VDNAHRV------AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSW-- 310 (457) Q Consensus 252 ~~n~~~~------~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~-- 310 (457) -.+.|.+ +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|.....+..+ T Consensus 315 Da~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~g 391 (524) T protein:vir:72 315 DASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DIRWFRQALYMALRVPLSRIPQDQQGGVMFD 391 (524) T ss_pred eCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCchhhcCCCCCcccccc Confidence 0112221 11 1 23455666643 334444 44667899999999999999432221111 Q ss_pred c-chHHHHHHHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHH Q lcl|Aclame:pro 311 G-SGLAEQNIAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELW 371 (457) Q Consensus 311 ~-~~~e~~~~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~ 371 (457) . +.+.-.-..|. .-|..+..++... |..+|+- .. +.-...++|++..--.-. +..+...+ T Consensus 392 r~~EItRDEikF~-KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l 470 (524) T protein:vir:72 392 SGTSITRDELTFA-KFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINML 470 (524) T ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHH Confidence 1 11111111222 2244444444444 4444332 12 122234445543211111 12233333 Q ss_pred HHHHh--CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 372 SLGLQ--NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 372 ~~~~~--~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) ..+-. +-.++.+=+|+ .+.+.-.+ +..... .-..+..++.-.++.+.++.- T Consensus 471 ~~~dpyvGky~s~~yi~k~ILr~tDee---------------i~~~~k---~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:72 471 TMAEPFIGKYISHRTAMKDILQMTDEE---------------IEQEAK---QIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHhhhhhcccchhHHHHHHHhccCHHH---------------HHHHHH---HHHHHhhcCCCCCCchhhhcC Confidence 32211 11223333332 23332110 000000 000000111111111111111 No 260 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=71.59 E-value=0.19 Score=24.49 Aligned_cols=404 Identities=10% Similarity=-0.005 Sum_probs=143.4 Q ss_pred Cchhhhhh---c-------ccccccccc---cccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh- Q lcl|Aclame:pro 1 MGFWSALF---G-------RGHSPALDA---AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI- 66 (457) Q Consensus 1 Mg~~~~l~---~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i- 66 (457) -.|..+|. . ++....... .....+++. .. -.+....+.|...+ T Consensus 21 ~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst------------------~~-----~a~~~Las~l~~~lt 77 (559) T protein:vir:95 21 QSFEPHWRELSDYINPRGSRFLTSEVNRNDRRNTRIIDST------------------GT-----MAARTLASGMMSGIT 77 (559) T ss_pred hHHHHHHHHHHHHhccccCCcCCCCCCcccccccccccch------------------HH-----HHHHHHHHHHHHhhc Confidence 11111110 0 000000000 000001110 00 11111112222222 Q ss_pred c-cCce-EEEEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEe Q lcl|Aclame:pro 67 A-TLPL-STYSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVL 136 (457) Q Consensus 67 a-~~p~-~~~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l 136 (457) . +-|| ++........... ....++..+.+-| ++.-+-.++.+++++|++.+++..+..+...+.++ T Consensus 78 pp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~ 153 (559) T protein:vir:95 78 SPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSN----LYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPF 153 (559) T ss_pred CCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEe Confidence 1 2233 1111000000000 0111122333333 33445566788999999999988776666667778 Q ss_pred ccceeEEEEcCCCcccceeeEEEEEee--------------------------------------ecc---cce-----e Q lcl|Aclame:pro 137 DPTKIHVHMVMVDGLRRKVFEAYDIDA--------------------------------------DGN---EVL-----L 170 (457) Q Consensus 137 ~p~~v~~~~~~~~~~~~~~~~~y~~~~--------------------------------------~~~---~~~-----~ 170 (457) +..++.+.++..+.+...+ ..|.... ... ... + T Consensus 154 ~l~~~~v~~d~~G~vd~i~-r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~pf 232 (559) T protein:vir:95 154 PIGSYYLANSPRGSVDTCF-RKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVMHSVYPNIDRDTSKLDSKNKPF 232 (559) T ss_pred ecCeEEEeeCCCCCeEEEE-EeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEEEEEeccccccccccccccceE Confidence 8888877776655332111 1010000 000 000 0 Q ss_pred --EEec---------------cceEEEeccCCccCCccccc-hhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC Q lcl|Aclame:pro 171 --GWFT---------------PRDVLHIPGMMLPGDFVGCS-PISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) Q Consensus 171 --~~~~---------------~~evih~~~~~~~~~~~G~s-~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 232 (457) ..+. ..-.+-.|.....+..||.| |.+-+...+.....+.+...........|.+.+..+.. T Consensus 233 ~s~~~e~~~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (559) T protein:vir:95 233 KSVYYEVGGDNDKLLRESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPPMVAPTSLK 312 (559) T ss_pred EEEEEEecCCCceeeecCCcccCCccceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCceecccccc Confidence 0000 00112222223345679999 89999999999999999988888888888776543321 Q ss_pred CCHHHHHHHHHHHHHHhccccccCcceeccC---cceeeeccCChhHHHH-HHHHHHHHHHHHHHhCCCHHHh-cccccc Q lcl|Aclame:pro 233 MSEEGLARAREAWRAANSGVDNAHRVALLTE---GAKFSKVAMSPDEAQF-LQTRQFQVPEIARIFGVPPHLI-SDATNS 307 (457) Q Consensus 233 ~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~---g~~~~~~~~s~~d~~~-~e~~~~~~~~Ia~~fgvpp~~l-g~~~~~ 307 (457) .... + . ..|++.+++. .-.++++..-..+.++ .+..+.....|..+|-..+.+. +..... T Consensus 313 ~~~~--~--------l-----~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~l~~r~~~ 377 (559) T protein:vir:95 313 NQRA--S--------L-----LPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMMLQNINTR 377 (559) T ss_pred ccce--e--------e-----eccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHHhhcCCCC Confidence 1110 0 0 1233322221 1234554321123332 3335678899999998876433 322222 Q ss_pred ccccchHHHHH------------HHHHHHHHhhHHHHHHHHHHh-hhcCcc--ccccceEEEecchhhhc-cHHHHH--- Q lcl|Aclame:pro 308 TSWGSGLAEQN------------IAFTMFSLRPWLERIEAGFNR-LLFAET--ADRFRFVKFNLDEIKRG-APKERM--- 368 (457) Q Consensus 308 ~~~~~~~e~~~------------~~~~~~~l~P~~~~ie~~l~~-~ll~~~--~~~~~~~~f~~~~~~~~-d~~~~~--- 368 (457) ..+..-+ ..+ ..+....+.|++.+.-..+.+ .+||+. +..+..+++.+.+.+.. ...... T Consensus 378 rvTAtEV-~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i 456 (559) T protein:vir:95 378 SMPVEAV-IEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSL 456 (559) T ss_pred CCCHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHH Confidence 2122111 111 222334445554444333332 233433 22233454554443321 111111 Q ss_pred ----HHHHHHHhCC-----CcCHHHH----HHHhCCCCCCCCCCceeeecccccccccccccccccC-------CCccCC Q lcl|Aclame:pro 369 ----ELWSLGLQNG-----IYSIDEV----RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPA-------PPAIDP 428 (457) Q Consensus 369 ----~~~~~~~~~g-----~~T~nE~----R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~-------~~~~~~ 428 (457) +.+..+-+.+ .+..+++ -+.+|.|+. .+..+--+..+.+....+.+.. +.+... T Consensus 457 ~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~------~irs~~ev~~~rqqr~~~qq~~q~~~~~~~aa~~~ 530 (559) T protein:vir:95 457 ASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPT------VIVPQEQVEQARQQRAQQQQQQQMMAMGMAAAQGV 530 (559) T ss_pred HHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 1111111110 1333332 233444421 1111000000000000000000 000000 Q ss_pred C--CCCCCCCCCcccCC-CCccccccccc Q lcl|Aclame:pro 429 P--AEEPADDEEPDNAE-GDPDEGETEDD 454 (457) Q Consensus 429 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~ 454 (457) + ++-....++.-.+- +....+..+.. T Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 531 KTLSEAKTSDPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred hccccccCCChhHHHHHHHhhcCccccCC Confidence 0 00000000000000 00000000000 No 261 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=71.42 E-value=0.2 Score=24.46 Aligned_cols=404 Identities=12% Similarity=0.076 Sum_probs=155.9 Q ss_pred hhhhhhccccccccccccc----ccccccchhhhc----------ccccccCccccCHHHHhc----cHHHHHHHHHHHH Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAEG----RAWEPYDPSIYN----------LGATASSGERVTPHDALQ----VSAVFASVRLLSE 64 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~----~~~v~~~i~~ia~ 64 (457) |+.- .|+...-....... ..|........+ ..-+......-..+..++ .+++...++.++. T Consensus 1 ~~~~-~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G 79 (489) T protein:vir:78 1 MLTE-NGQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVG 79 (489) T ss_pred CccC-CCccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHHHhc Confidence 1110 01100000000000 000000000000 000000000001222222 3444555555555 Q ss_pred hhccCceEEEEeccCceeeecCcchhhhccCCC-CCCCHHHHHHHHHHHHHHcCCeEEEEEecC-Cc-----------ee Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEP-GGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PN-----------IA 131 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn-~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~-----------~~ 131 (457) .+-+-|..+- ....+..++.... ...+-.+|.+.++...+.+|.+++.+-... +. .. T Consensus 80 ~vfrk~p~~~----------~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rP 149 (489) T protein:vir:78 80 SVMRKEPEIN----------IPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNP 149 (489) T ss_pred hhhcCCccee----------ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCc Confidence 5555444331 1122333333322 335678999999999999999999986532 11 11 Q ss_pred EEEEeccceeEEE----------------------EcCCCcccceeeEEEEEeee--cccceeEEe----------ccce Q lcl|Aclame:pro 132 GLDVLDPTKIHVH----------------------MVMVDGLRRKVFEAYDIDAD--GNEVLLGWF----------TPRD 177 (457) Q Consensus 132 ~~~~l~p~~v~~~----------------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~----------~~~e 177 (457) -+..+.|..|.=+ .+..+++.......|+.-.. ++....+.+ ...+ T Consensus 150 y~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~ 229 (489) T protein:vir:78 150 TIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVE 229 (489) T ss_pred EEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeE Confidence 2333444333111 11112211111111111000 000000000 0001 Q ss_pred E-----------EEecc--CCccCCccccchhHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 178 V-----------LHIPG--MMLPGDFVGCSPISYARES-IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARARE 243 (457) Q Consensus 178 v-----------ih~~~--~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~ 243 (457) + |-+-. ....+...+.||+..+... +..+..... ....+...+.|..++......+++....... T Consensus 230 ~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd-~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~ 308 (489) T protein:vir:78 230 IYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSAD-NEESSFVVGQPTLFIYPGENLTPQAFKEANP 308 (489) T ss_pred EeccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhH-HHHHHHHcccceeeeecCccCCcccccccCc Confidence 1 11111 0112344678888766543 333333333 3444556678888887655555543332221 Q ss_pred HHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 244 AWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTM 323 (457) Q Consensus 244 ~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~ 323 (457) .....+ +...+.++.+.++.-+..++..+. .+.++....+.+ .+-..++.- .++.+. .........-. T Consensus 309 --~~i~~g---~~~~~~lp~~~~~~~ie~~~~~~~-r~~l~~le~qm~---~lGa~l~~~--~~~~Ta-~~~~~~~~~~~ 376 (489) T protein:vir:78 309 --NGIKFG---SRRGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAI---QIGAQLITP--TQQITA-QSARIQRGADT 376 (489) T ss_pred --cceeeC---CcccccCCCCCCcceeccCcchHH-HHHHHHHHHHHH---HHhhhhccC--CcchhH-HHHHHHHHHhh Confidence 011122 234566766666555554444332 222222222222 111223321 112222 12223334447 Q ss_pred HHHhhHHHHHHHHHHhhh--cCcc-cc-cc--ceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 324 FSLRPWLERIEAGFNRLL--FAET-AD-RF--RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 324 ~~l~P~~~~ie~~l~~~l--l~~~-~~-~~--~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ..|.-++..+|+++++.| ...+ +. .. ..+..+.+.....-..+..+++.++++.|.++....++.+-.-.+.++ T Consensus 377 S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~ 456 (489) T protein:vir:78 377 SVMATIARNVSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDW 456 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCc Confidence 778888889999888754 2222 11 12 233334443333223445677778899999998888876643222211 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCccc Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN 441 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (457) . ...+......++ .+.+.+...+-+...+..+. T Consensus 457 ~---------~e~~~~ei~~~~--~~~~~~~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 457 T---------DADIKDAVADQP--LPVATEVQGEIPQSAQQQEK 489 (489) T ss_pred c---------HHHHHHHHhhcC--CCcccCCcccCCCCcccccC Confidence 0 011111111111 11111111111111111111 No 262 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=70.05 E-value=0.21 Score=24.25 Aligned_cols=412 Identities=12% Similarity=0.061 Sum_probs=157.5 Q ss_pred Cch--hh---hhhcccccc-------------cc-ccccccc-cc-ccchhhhccccccc---Ccc---------cc-CH Q lcl|Aclame:pro 1 MGF--WS---ALFGRGHSP-------------AL-DAAEGRA-WE-PYDPSIYNLGATAS---SGE---------RV-TP 46 (457) Q Consensus 1 Mg~--~~---~l~~~~~~~-------------~~-~~~~~~~-~~-~~~~~~~~~~~~~~---~~~---------~v-~~ 46 (457) |.| |+ .|-+. .+. +. ....+.. .+ +......+..+... .+. .+ .. T Consensus 1 m~~~~L~~~~~w~~~-de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~Y 79 (524) T protein:vir:10 1 MKFNVLSLFAPWAKM-DERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTY 79 (524) T ss_pred CCCchhhHhhccccC-cchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHH Confidence 665 32 22111 110 00 0000000 00 00000000111000 000 01 23 Q ss_pred HHHhccHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 47 HDALQVSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGN 118 (457) Q Consensus 47 ~~~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~ 118 (457) +..+.+|.|..||+-|.+.+.-. |+.+-..+-+ ..+......+..++.--+.... -..++..|.+.|. T Consensus 80 R~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgR 155 (524) T protein:vir:10 80 RNLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLSFQRK----GSDHFRRWYVDSR 155 (524) T ss_pred HHHhhccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeE Confidence 45667999999999999887533 2333221111 0000111112222221222222 3345566778899 Q ss_pred eEEEEEec----CCceeEEEEeccceeEEEEcCC----Ccccc----eeeEEEEEeee--------cccceeEEeccceE Q lcl|Aclame:pro 119 AFLAVRWA----GPNIAGLDVLDPTKIHVHMVMV----DGLRR----KVFEAYDIDAD--------GNEVLLGWFTPRDV 178 (457) Q Consensus 119 ~~~~i~~~----~g~~~~~~~l~p~~v~~~~~~~----~~~~~----~~~~~y~~~~~--------~~~~~~~~~~~~ev 178 (457) .|.-++-+ ..+..++..|+|..++.++... .+... ..+..|..... ...+....++.+-| T Consensus 156 i~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI 235 (524) T protein:vir:10 156 IFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAI 235 (524) T ss_pred EEEEEEeeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhhe Confidence 88876543 3689999999999997644332 11110 01112211110 01122334555554 Q ss_pred EEeccCCc--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc---- Q lcl|Aclame:pro 179 LHIPGMML--PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG---- 251 (457) Q Consensus 179 ih~~~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---- 251 (457) .|. +... .++..=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. T Consensus 236 ~y~-hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvY 314 (524) T protein:vir:10 236 VYA-HSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVY 314 (524) T ss_pred eee-eccceeCCCCceeccchhhhHHHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEE Confidence 444 3222 2333446777777777776666666555443333443444444322 2222233333333322211 Q ss_pred ccccCcc------ee-c----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccc-- Q lcl|Aclame:pro 252 VDNAHRV------AL-L----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSW-- 310 (457) Q Consensus 252 ~~n~~~~------~v-l----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~-- 310 (457) -.+.|.+ +- + +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|.....+..+ T Consensus 315 Da~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~g 391 (524) T protein:vir:10 315 DASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DVRWFRQALYMALRVPLSRIPQDQQGGVMFD 391 (524) T ss_pred eCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCchhhcCCCCCcccccc Confidence 0112221 11 1 23455666643 334444 44667899999999999999432221111 Q ss_pred c-chHHHHHHHHHHHHHhhHHHHHHHH----HHhhhcC-----cc--ccccceEEEecchhhhcc-------HHHHHHHH Q lcl|Aclame:pro 311 G-SGLAEQNIAFTMFSLRPWLERIEAG----FNRLLFA-----ET--ADRFRFVKFNLDEIKRGA-------PKERMELW 371 (457) Q Consensus 311 ~-~~~e~~~~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~--~~~~~~~~f~~~~~~~~d-------~~~~~~~~ 371 (457) . +.+.-.-..|. .-|..+..++... |..+|+- .. +.-...++|++..--.-. +..+...+ T Consensus 392 r~~EItRDEikF~-KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l 470 (524) T protein:vir:10 392 SGTSITRDELTFA-KFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINML 470 (524) T ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHH Confidence 1 11111111222 2244444444444 4444332 12 122234445543211111 12233333 Q ss_pred HHHHh--CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 372 SLGLQ--NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 372 ~~~~~--~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) ..+-. +-.++.+=+|+ .+.+.-.+ +..... .-..+..++.-.++.+.++.- T Consensus 471 ~~~dpyvGky~s~~yi~k~ILr~tDee---------------i~~~~k---~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 471 TMAEPFIGKYISHRTAMKDILQMTDEE---------------IEQEAK---QIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHhhhhhcccchhHHHHHHHhccCHHH---------------HHHHHH---HHHHHhhcCCCCCCchhhhcC Confidence 32211 11223333332 23332110 000000 000000111111111111111 No 263 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=69.82 E-value=0.22 Score=24.22 Aligned_cols=417 Identities=10% Similarity=0.013 Sum_probs=149.8 Q ss_pred Cch--------------hhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGF--------------WSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETI 66 (457) Q Consensus 1 Mg~--------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 66 (457) |.= |+.+..... .....-.+-...+.+..+........-.....+ .++...|++.+|..+ T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~~R~-----~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Laa~l 74 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKNDRV-----PYETRAENCAKVTIPSLFPKDSDNSSTDYTTPW-QAVGARGLNNLSAKV 74 (543) T ss_pred CcccccCcchHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHhccccCCCCCCcccccccccc-cchHHHHHHHHHHHH Confidence 221 111111000 000000000111111111110000000001122 344455666666655 Q ss_pred cc-C-c---e-EEEEeccCcee----eec-----------CcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEe Q lcl|Aclame:pro 67 AT-L-P---L-STYSKRGGTRK----EID-----------TPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) Q Consensus 67 a~-~-p---~-~~~~~~~~~~~----~~~-----------~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~ 125 (457) .+ | | | ++......-.. ..+ ...++..+.+-| ++.-+-.++.++..+|++.+++.. T Consensus 75 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~sn----f~~~~~~~~~~L~~~G~a~ly~~~ 150 (543) T protein:vir:88 75 MLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANS----YRVTLFELIRQLALAGTALIYLPP 150 (543) T ss_pred HHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceeeeecc Confidence 32 2 2 2 11111000000 000 011112222222 344455667888899999998876 Q ss_pred cCCce---eEEEEeccceeEEEEcCCCcccce-----------------------------eeEEEEEee-eccccee-- Q lcl|Aclame:pro 126 AGPNI---AGLDVLDPTKIHVHMVMVDGLRRK-----------------------------VFEAYDIDA-DGNEVLL-- 170 (457) Q Consensus 126 ~~g~~---~~~~~l~p~~v~~~~~~~~~~~~~-----------------------------~~~~y~~~~-~~~~~~~-- 170 (457) +.++. ..+..++...+.+.++..+.+... ....|.... ....... T Consensus 151 ~~~~~~~~~~~~~~pl~~y~v~~d~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V~pr~~~~~~~~ 230 (543) T protein:vir:88 151 PDASSNSYNPMKLYTLHNHVVQRDAFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHIYIDDESGDFLS 230 (543) T ss_pred CccccceecceEEeEcceEEEeeCCCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEEEeecCCCcccc Confidence 54322 222223334444444443322100 011111110 0000000 Q ss_pred ------EE---------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCH Q lcl|Aclame:pro 171 ------GW---------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSE 235 (457) Q Consensus 171 ------~~---------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 235 (457) .. +...-.+..|.....+..||.||.+.+...+.....+.+...........|.+++..+..... T Consensus 231 ~~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~~~ 310 (543) T protein:vir:88 231 YQEIEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISSKVVGLVNPNGITQV 310 (543) T ss_pred cccccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccch Confidence 00 111233444444455678999999999999999999999999998888888877655544333 Q ss_pred HHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHH Q lcl|Aclame:pro 236 EGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLA 315 (457) Q Consensus 236 e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e 315 (457) .... .+..+. -+.-..+++...++...+.-.-..+..+.....|..+|-+.. +... ++...++.-- T Consensus 311 ~~~~----------~~~~g~-~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--~~~~-~~~r~TAtEV 376 (543) T protein:vir:88 311 RRLV----------KAQTGD-FVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLNS--AVQR-SGERVTAEEI 376 (543) T ss_pred hhcc----------cCCCce-eecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--hccC-CCCcccHHHH Confidence 2211 111111 011123344455555443333345566777888988886542 2211 2222222111 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-------------hhhcCccccccceEEEec--chhhhccHHHHHHHHHHHHhC--- Q lcl|Aclame:pro 316 EQNIAFTMFSLRPWLERIEAGFN-------------RLLFAETADRFRFVKFNL--DEIKRGAPKERMELWSLGLQN--- 377 (457) Q Consensus 316 ~~~~~~~~~~l~P~~~~ie~~l~-------------~~ll~~~~~~~~~~~f~~--~~~~~~d~~~~~~~~~~~~~~--- 377 (457) ..+..-....|.|....++++|- ..+|++.......+.+-. ..+-+.-..+....+...+.. T Consensus 377 ~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~v~~~~~ 456 (543) T protein:vir:88 377 RYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVTTGAEALGRGQDLDKLTQFLNAVATVSQ 456 (543) T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEEecHHHHHHHHHHHHHHHHHHHHHhccc Confidence 22222334445555555544442 224443332222233221 222222111111111121211 Q ss_pred ----CCcCHHHH----HHHhCCCCCCCCCCceeeeccccccccccccc------ccccCCCccCCCCCCCCCCCC---c- Q lcl|Aclame:pro 378 ----GIYSIDEV----RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEP------EPAPAPPAIDPPAEEPADDEE---P- 439 (457) Q Consensus 378 ----g~~T~nE~----R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~- 439 (457) -.+..+++ .+.+|.+|.. .+..+.-.+.+...-.. +.+....+. .......++. - T Consensus 457 p~vld~id~d~~~~~~a~~~Gv~~~~-----i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 529 (543) T protein:vir:88 457 LNGDPDLNVNNIKLRLANAIGIDTAG-----LLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGV--AAQATASPEAMESAM 529 (543) T ss_pred hhhhccCCHHHHHHHHHHHhCCChhh-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhhccChHHHHHHh Confidence 01223332 2334654310 01100000000000000 000000000 0000000000 0 Q ss_pred cc-----CCCCccc Q lcl|Aclame:pro 440 DN-----AEGDPDE 448 (457) Q Consensus 440 ~~-----~~~~~~~ 448 (457) ++ .+-.+.. T Consensus 530 ~~~~~~~~p~~~~~ 543 (543) T protein:vir:88 530 DTAGVQPGPIATQV 543 (543) T ss_pred hhcCCCCCCCCCCC Confidence 00 0001111 No 264 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=68.68 E-value=0.23 Score=24.04 Aligned_cols=414 Identities=11% Similarity=0.036 Sum_probs=149.0 Q ss_pred hhhhhhcccccccccccc----cccccccchhhhcc------c-ccccCcccc---CHHHHhc----cHHHHHHHHHHHH Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAE----GRAWEPYDPSIYNL------G-ATASSGERV---TPHDALQ----VSAVFASVRLLSE 64 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~-~~~~~~~~v---~~~~~~~----~~~v~~~i~~ia~ 64 (457) |-++= .......... ...|........+- + .+......- .++..++ .+++...++.++. T Consensus 1 m~~~~---~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G 77 (513) T protein:vir:97 1 MADKD---PKSPATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLSG 77 (513) T ss_pred CCCCC---CCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhh Confidence 11100 0000000000 00000000000000 0 000000000 1122222 3445555555555 Q ss_pred hhccCceEEEEeccCceeeecCcchhh-hccCCC-CCCCHHHHHHHHHHHHHHcCCeEEEEEecC-Cc------------ Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLD-FPNAEP-GGMGRIDILSQTVLSLLLQGNAFLAVRWAG-PN------------ 129 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~-l~~~pn-~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~-g~------------ 129 (457) .+-+-|..+-. ...+.+.. ++.... ...+-.+|.+.++...+.+|.+++.+-... +. T Consensus 78 ~vf~k~p~~~~--------~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade 149 (513) T protein:vir:97 78 KPFSEPIKLNE--------DVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADD 149 (513) T ss_pred hhhhcCcccCc--------CchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHH Confidence 55444443210 01122222 332222 345678999999999999999999985321 10 Q ss_pred -----eeEEEEeccceeEE--------------------EEcCCCcccceeeEEEEEeee-----------cccce--eE Q lcl|Aclame:pro 130 -----IAGLDVLDPTKIHV--------------------HMVMVDGLRRKVFEAYDIDAD-----------GNEVL--LG 171 (457) Q Consensus 130 -----~~~~~~l~p~~v~~--------------------~~~~~~~~~~~~~~~y~~~~~-----------~~~~~--~~ 171 (457) ..-+..+.|..|.= ..+. ++...+....|+.-.. ..... .. T Consensus 150 ~~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~-Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~ 228 (513) T protein:vir:97 150 RREGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQ-DGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWA 228 (513) T ss_pred HhhccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeec-CCCcceEEEEEEEEeCceEEEEEeecCCCccccceE Confidence 11123334433310 1111 1111111111111000 00000 00 Q ss_pred E-------eccceEEEeccCCccCCccccchhHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 172 W-------FTPRDVLHIPGMMLPGDFVGCSPISYARES-IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARARE 243 (457) Q Consensus 172 ~-------~~~~evih~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~ 243 (457) . +..=-++.+- ....+...|.||+..+... +..+.....+. ..+...+.|..++..-.... .+ T Consensus 229 ~~~~g~~~l~~IP~v~~~-~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~-~il~~~~~P~l~~~G~~~~~---~~---- 299 (513) T protein:vir:97 229 LADEWATGLNYVPLVTFY-ADRQGFMMGKPPLLDLAHLNVAHWQSASDQR-HILTVSRFPILACSGASGED---SD---- 299 (513) T ss_pred EecCCCCcCCceeEEEEe-cCCCCCCCCccchHHHHHHHHHHHhhhhhHH-HHHHhcccceeeeecCCcCC---CC---- Confidence 0 0000111111 1112345678887765533 33333333333 33455667877776321111 00 Q ss_pred HHHHHhccccccCcceeccC-cceeeeccCChhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHH Q lcl|Aclame:pro 244 AWRAANSGVDNAHRVALLTE-GAKFSKVAMSPDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF 321 (457) Q Consensus 244 ~~~~~~~~~~n~~~~~vl~~-g~~~~~~~~s~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~ 321 (457) ....| +..++.+++ |.++.-+..+.+-+. ..+.++...+++. ..|. .+|... .++.+.. .......- T Consensus 300 ---~i~iG---~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~-~~Ga--~ll~~~-~~~~Ta~-a~~~~~~~ 368 (513) T protein:vir:97 300 ---PVVVG---PNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMA-GYGA--EFLKRK-TGGQTAT-ARALDSAE 368 (513) T ss_pred ---ceEee---ccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHH-HHHH--HhhccC-CccccHH-HHHHHHHH Confidence 01122 244566764 555554444433322 2334444444442 2232 233221 1122221 11222233 Q ss_pred HHHHHhhHHHHHHHHHHhhhc--Ccc---ccccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhC---C-C Q lcl|Aclame:pro 322 TMFSLRPWLERIEAGFNRLLF--AET---ADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAED---M-T 392 (457) Q Consensus 322 ~~~~l~P~~~~ie~~l~~~ll--~~~---~~~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G---~-~ 392 (457) ....|.-++..+|+.+++.|- ..+ +.....+.++.+-....-.....+++.+++..|.+|....++.+- . + T Consensus 369 ~~S~L~~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~ 448 (513) T protein:vir:97 369 ATSDLSAMTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLP 448 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCC Confidence 456677788888888876552 111 112234555444444443455667778899999998877766542 2 1 Q ss_pred CCCCCCCceee---e----ccc-cccccccccc-ccccCCCccCCCCCCCCCCCCcccCCCCccccccccccCC Q lcl|Aclame:pro 393 PLPDGLGEKYR---V----PLN-LGEIGEEPEP-EPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) Q Consensus 393 p~~~~~gd~~~---~----~~n-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (457) |--+ .|..+ + +.. ....+..... .+..+....+..+.+.+++.+--|+.+.+ .-++ T Consensus 449 ~d~d--~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 513 (513) T protein:vir:97 449 EDFD--EDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNP-------GGES 513 (513) T ss_pred ccCC--HHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCC-------CCCC Confidence 1111 01000 0 000 0000000000 00000011111111111111111111111 1111 No 265 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=63.67 E-value=0.31 Score=23.35 Aligned_cols=414 Identities=12% Similarity=0.064 Sum_probs=158.9 Q ss_pred Cch-hhhhhccccc----------------cccccccccc--c--cccchh--hhc-----cccccc---Cc-ccc-CHH Q lcl|Aclame:pro 1 MGF-WSALFGRGHS----------------PALDAAEGRA--W--EPYDPS--IYN-----LGATAS---SG-ERV-TPH 47 (457) Q Consensus 1 Mg~-~~~l~~~~~~----------------~~~~~~~~~~--~--~~~~~~--~~~-----~~~~~~---~~-~~v-~~~ 47 (457) |.| ...+|+...+ ++........ . +...+. ... +.+... +. ..+ ..+ T Consensus 1 m~f~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (523) T protein:vir:68 1 MKFNILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYR 80 (523) T ss_pred CCCchhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHH Confidence 655 1223332111 0111100000 0 000000 000 000000 00 001 244 Q ss_pred HHhccHHHHHHHHHHHHhhccC-----ceEEEEeccC---ceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCe Q lcl|Aclame:pro 48 DALQVSAVFASVRLLSETIATL-----PLSTYSKRGG---TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNA 119 (457) Q Consensus 48 ~~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~---~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~ 119 (457) ..+.+|.|..||+-|.+.+.-. |+.+-...-+ ..+......+..++.--+.... -..++..|.+.|.. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi 156 (523) T protein:vir:68 81 NLMTNYEVDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRK----GSDHFRRWYVDSRI 156 (523) T ss_pred HHhhccchhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchh----hhHHHHhheeeeEE Confidence 5667999999999999887533 2332221110 0000111122222222222222 33445667788998 Q ss_pred EEEEEec----CCceeEEEEeccceeEEEEcCCCc----ccc----eeeEEEEEeeec--------ccceeEEeccceEE Q lcl|Aclame:pro 120 FLAVRWA----GPNIAGLDVLDPTKIHVHMVMVDG----LRR----KVFEAYDIDADG--------NEVLLGWFTPRDVL 179 (457) Q Consensus 120 ~~~i~~~----~g~~~~~~~l~p~~v~~~~~~~~~----~~~----~~~~~y~~~~~~--------~~~~~~~~~~~evi 179 (457) |.-++-+ ..+..++..|+|..++.++..... ... ..+..|...... ..+....++.+-|. T Consensus 157 ~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~ 236 (523) T protein:vir:68 157 FFHKIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAIV 236 (523) T ss_pred EEEEEeeCCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhhee Confidence 8876543 368999999999999765433221 100 011122211110 11223345555544 Q ss_pred Eecc-CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCC-CCHHHHHHHHHHHHHHhcc------ Q lcl|Aclame:pro 180 HIPG-MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT-MSEEGLARAREAWRAANSG------ 251 (457) Q Consensus 180 h~~~-~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~------ 251 (457) |..- .-+.++..=+|-+..+.+.++-..-++.+.--+--.-+.-+-+..++-. +-...+++..+.+...+.. T Consensus 237 y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa 316 (523) T protein:vir:68 237 YAHSGLVDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDA 316 (523) T ss_pred eeeccceeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEec Confidence 4432 1122333446777777777776666666555443333444444444322 2222233333333222211 Q ss_pred ----ccccCcceec-----------cCcceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc-cccccch Q lcl|Aclame:pro 252 ----VDNAHRVALL-----------TEGAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN-STSWGSG 313 (457) Q Consensus 252 ----~~n~~~~~vl-----------~~g~~~~~~~~--s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~-~~~~~~~ 313 (457) ..+..+.+-+ +.|.+++.|.. +..+++ -..+..+.+.++++||.+-|....+ .+...++ T Consensus 317 ~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~ 393 (523) T protein:vir:68 317 TTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DVRWFRNALYMALRIPITRIPSDQGGIQFDAGT 393 (523) T ss_pred cCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCcceeecCCCcceeccccc Confidence 1111111111 23455666643 334444 4466789999999999999953321 2221111 Q ss_pred -HHHHHHHHHHHHHhhHHHHHHHH----HHhhhcC-----ccc--cccceEEEecchhhhcc-------HHHHHHHHHHH Q lcl|Aclame:pro 314 -LAEQNIAFTMFSLRPWLERIEAG----FNRLLFA-----ETA--DRFRFVKFNLDEIKRGA-------PKERMELWSLG 374 (457) Q Consensus 314 -~e~~~~~~~~~~l~P~~~~ie~~----l~~~ll~-----~~~--~~~~~~~f~~~~~~~~d-------~~~~~~~~~~~ 374 (457) +.-.-..| ..-|..+..++... |..+|+- +.+ .-...++|++..--.-. +..+...+..+ T Consensus 394 EItRDEikF-~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~ 472 (523) T protein:vir:68 394 SITRDELSF-GKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMA 472 (523) T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHh Confidence 11111112 22244444444444 4444332 121 22234445443211111 12233333322 Q ss_pred Hh--CCCcCHHHHHH-HhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcc Q lcl|Aclame:pro 375 LQ--NGIYSIDEVRA-AEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPD 440 (457) Q Consensus 375 ~~--~g~~T~nE~R~-~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (457) -. +-.++.+=+|+ .+.+...+ +..... .-..+..++.-.++.+.++.- T Consensus 473 dpyvGky~s~~yi~k~ILr~tDee---------------i~~~~k---qI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 473 EPFIGKYISHRTAMKDILQMSDEE---------------IEQEAK---QIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred hhhhcccchhHHHHHHHhccCHHH---------------HHHHHH---HHHHHhhcCCCCCCchhhhcC Confidence 11 11223333332 23332110 000000 000000111111111111111 No 266 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=53.34 E-value=0.53 Score=22.09 Aligned_cols=391 Identities=8% Similarity=-0.029 Sum_probs=130.7 Q ss_pred Cchhhhh-----------hcccccccccccccccccccchhhh--------ccc---ccccCccccCHHHH---hc---- Q lcl|Aclame:pro 1 MGFWSAL-----------FGRGHSPALDAAEGRAWEPYDPSIY--------NLG---ATASSGERVTPHDA---LQ---- 51 (457) Q Consensus 1 Mg~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~v~~~~~---~~---- 51 (457) -.|.++| |.+... .....+.+++...... ... +.++....++.... .. T Consensus 28 ~~~e~~w~e~a~~~lP~~~~~~~~---~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~ 104 (516) T protein:vir:10 28 SSFLDRAKHYSKLTLPYLMNDKGD---NETSQNGWQGVGAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLK 104 (516) T ss_pred hHHHHHHHHHHHhhcccccCCCCC---cccccccccchHHHHHHHHHHHHHhhhcCCCCccccccCChhhHhhhhccCch Confidence 1111111 000000 0000112221111100 000 00111111111100 00 Q ss_pred cHHHHHHHHHHHHhhccCceEEEEeccCceeeecCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCcee Q lcl|Aclame:pro 52 VSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIA 131 (457) Q Consensus 52 ~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~ 131 (457) ...|..-+..+.+ ..+..+.+.| ++.-+-.++.++..+|++.+++....+ . T Consensus 105 ~~~v~~~L~~ve~-----------------------~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~d~~~~--~ 155 (516) T protein:vir:10 105 KTELATIFAQVET-----------------------RAMKELEQRQ----FRPAVVEAFKHLIVAGSCMLYKPSKGA--I 155 (516) T ss_pred hHHHHHHHHHHHH-----------------------HHHHHHHhcC----cHHHHHHHHHHHHhHCeEeEEecCCCC--e Confidence 1111111111110 1112222222 233345556667778888776633221 2 Q ss_pred EEEEeccceeEEEEcCCCcccce--------------------------------eeEEEEEeeecccceeEE------- Q lcl|Aclame:pro 132 GLDVLDPTKIHVHMVMVDGLRRK--------------------------------VFEAYDIDADGNEVLLGW------- 172 (457) Q Consensus 132 ~~~~l~p~~v~~~~~~~~~~~~~--------------------------------~~~~y~~~~~~~~~~~~~------- 172 (457) ..+|| .++.+.++..+.+... ....|............. T Consensus 156 ~~~pl--~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~~~~~~~~~~~~~d~~ 233 (516) T protein:vir:10 156 SAIPM--HHYVVNRDTNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKYLGEGFWELKQSADDI 233 (516) T ss_pred EEEEc--CeEEEeeCCCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEecCCCceEEEEeeCce Confidence 23444 3444444444322110 001111111111110111 Q ss_pred ---------eccceEEEeccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 173 ---------FTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARARE 243 (457) Q Consensus 173 ---------~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~ 243 (457) |...-.+-.|.....+..||.||.+-+...+.....+.+.......-...|.+++............ T Consensus 234 ~~~~~s~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~l~---- 309 (516) T protein:vir:10 234 PVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTDVDHFV---- 309 (516) T ss_pred eeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcccCcccccchhhhc---- Confidence 1111223344444456789999999999999999999999988887777777766544333322111 Q ss_pred HHHHHhccccccCcceeccCcceeeeccCC-hhHHH-HHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHH Q lcl|Aclame:pro 244 AWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQ-FLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF 321 (457) Q Consensus 244 ~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s-~~d~~-~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~ 321 (457) .+ .+ +.++-+..-++.++... ..+.+ ..+..+.....|..+|=+.....-... ..+ +.--..+..- T Consensus 310 ------~~-~~--g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd~~--rvT-AtEV~~r~~E 377 (516) T protein:vir:10 310 ------NS-GT--GEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTRRDAE--RVT-AVEIQRDALE 377 (516) T ss_pred ------cC-CC--ceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhhhhccCCc--ccc-HHHHHHHHHH Confidence 11 11 11222222234444322 23333 345567778889888877653332222 112 2111222333 Q ss_pred HHHHHhhHHHHHHHHHHhhhc--------Ccc--cc-ccceEEEecchhhhccHHHHHHHHHHHHhCCCc-CHHHHHHHh Q lcl|Aclame:pro 322 TMFSLRPWLERIEAGFNRLLF--------AET--AD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIY-SIDEVRAAE 389 (457) Q Consensus 322 ~~~~l~P~~~~ie~~l~~~ll--------~~~--~~-~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~-T~nE~R~~~ 389 (457) ....|.|....+.++|-.-|+ ++. +. .-.++. -++.+-+.-...........+.. ++ -+-++...+ T Consensus 378 ~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~v~-~i~~L~raq~~~~i~~~~q~i~~-~~q~~p~v~d~i 455 (516) T protein:vir:10 378 IEQNMGGVYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVIIT-GIEALGRMAELDKLANFAQYMSL-PLQWPEPVLAAV 455 (516) T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCChhhcCcceeh-hHHHHHHHHHHHHHHHHHHHHHH-HhcCChHHHhhc Confidence 345566666666665532222 111 11 111111 12222222111111111111210 00 011122222 Q ss_pred CCCCCCCCCCceeeecccccccccccc----cc---cccCCCccCCCCCCCCCCCCcccCCCCccccccccc Q lcl|Aclame:pro 390 DMTPLPDGLGEKYRVPLNLGEIGEEPE----PE---PAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDD 454 (457) Q Consensus 390 G~~p~~~~~gd~~~~~~n~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457) +++..-+..++.+-+|.++........ +. ......+...+....+.- .++-|++ T Consensus 456 d~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~~~~~~~~~~~~-----------~~~~~~~ 516 (516) T protein:vir:10 456 KWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLEEGVAKAVPGVI-----------QQELKEA 516 (516) T ss_pred CHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh-----------hhhhhcC Confidence 221111111222222222221111111 00 000000011111000000 0011111 No 267 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=50.58 E-value=0.61 Score=21.78 Aligned_cols=396 Identities=13% Similarity=0.052 Sum_probs=148.8 Q ss_pred CchhhhhhcccccccccccccccccccchhhhcccccccCccccCHHHHhccHHHHHHHHHHHHhhc------cCce-EE Q lcl|Aclame:pro 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA------TLPL-ST 73 (457) Q Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia------~~p~-~~ 73 (457) +--...+.+.... .........+ .++...|++.+|..+. +-|| ++ T Consensus 35 lP~~~~~~~~~~~-~~~~~~~~~~---------------------------dst~~~a~~~Las~l~~~ltpp~~~WF~l 86 (556) T protein:vir:73 35 NPRGSRFLTSDVN-RDDRRNTKIV---------------------------DPTGSMAQRILSSGMMSGITSPARPWFKL 86 (556) T ss_pred ccccCCcCCCCCC-cchhhcCccc---------------------------cchHHHHHHHHHHHHHHhhcCCCCccccc Confidence 1111111111000 0000000001 1111123333333321 1122 11 Q ss_pred EEeccCceeee--------cCcchhhhccCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCceeEEEEeccceeEEEE Q lcl|Aclame:pro 74 YSKRGGTRKEI--------DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHM 145 (457) Q Consensus 74 ~~~~~~~~~~~--------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~g~~~~~~~l~p~~v~~~~ 145 (457) ...+.+..... ....++..+.+-| ++.-+..++.+++.+|++.+++..+.++...+.+++..++.+.+ T Consensus 87 ~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~r~~~~~l~~~~~~~ 162 (556) T protein:vir:73 87 ATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSN----LYQSLPVMYASLGTFGTGAMAVMEDDQDVIRTMPFPIGSYYLAN 162 (556) T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhhCceeeeeeecCCceEEEEEeecceeEEee Confidence 11111000000 0111122233322 44456667888999999999988776666667777777776666 Q ss_pred cCCCcccceeeEEEEEee------------------------------------e--cc---c--c---ee--E------ Q lcl|Aclame:pro 146 VMVDGLRRKVFEAYDIDA------------------------------------D--GN---E--V---LL--G------ 171 (457) Q Consensus 146 ~~~~~~~~~~~~~y~~~~------------------------------------~--~~---~--~---~~--~------ 171 (457) +..+.+... +..|.... . .. . . .. . T Consensus 163 d~~G~vd~i-~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~p~~s~~~~~~~ 241 (556) T protein:vir:73 163 SPRGSVDTC-IRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEVNHCITPNVNRDSGKMDSKNKPYRSVYFESGG 241 (556) T ss_pred CCCCCeEEE-EEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEEEEEEeccccccccccCcccceEEEEEEEecC Confidence 655433211 11111000 0 00 0 0 00 0 Q ss_pred ---------EeccceEEEeccCCccCCccccc-hhHHHHHHHHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHH Q lcl|Aclame:pro 172 ---------WFTPRDVLHIPGMMLPGDFVGCS-PISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARA 241 (457) Q Consensus 172 ---------~~~~~evih~~~~~~~~~~~G~s-~~~~~~~~i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~ 241 (457) .|...-.+..|.....+..||.| |.+.+...+.....+.+.......-...|.+.+..+..... T Consensus 242 ~~~~vl~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~~~~------ 315 (556) T protein:vir:73 242 DSDKLLRESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNPPMVAPTSLKNQR------ 315 (556) T ss_pred CCceecccCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcCceeccccccccc------ Confidence 00111223334444456789999 89999999999999999888888888888776543321100 Q ss_pred HHHHHHHhccccccCcceeccCcceeeeccC-ChhHHHHHHHHHHHHHHHHHHhCCCHHH-hccccccccccchHHHHHH Q lcl|Aclame:pro 242 REAWRAANSGVDNAHRVALLTEGAKFSKVAM-SPDEAQFLQTRQFQVPEIARIFGVPPHL-ISDATNSTSWGSGLAEQNI 319 (457) Q Consensus 242 ~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~-s~~d~~~~e~~~~~~~~Ia~~fgvpp~~-lg~~~~~~~~~~~~e~~~~ 319 (457) .+..-|+-+.. .+..+.-.++++.. ++.-....+..+.....|-++|-....+ ++.......+..-+ ..+. T Consensus 316 ----~~~~pgg~~~~--~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~~~~l~~~~~~r~TAtEv-~~r~ 388 (556) T protein:vir:73 316 ----VSLLPGDVTYL--DVISGQDGFKPAYLVNPNTADLLADIQDTRQTINSAYFVDLFMMLQNINTRSMPVEAV-IEMK 388 (556) T ss_pred ----eeeccCccccc--cCCCCccceeeeccccccHHHHHHHHHHHHHHHHHHhhcchhhhhccCCCCCccHHHH-HHHH Confidence 01111111111 11122234666643 3333334455677889999999887533 33332222222111 1122 Q ss_pred HHHHHHHhhHHHHHHHHH------------Hh-hhcCcc--ccccceEEEecchhhhc-cHHHHHHHHHH---HHhC--C Q lcl|Aclame:pro 320 AFTMFSLRPWLERIEAGF------------NR-LLFAET--ADRFRFVKFNLDEIKRG-APKERMELWSL---GLQN--G 378 (457) Q Consensus 320 ~~~~~~l~P~~~~ie~~l------------~~-~ll~~~--~~~~~~~~f~~~~~~~~-d~~~~~~~~~~---~~~~--g 378 (457) .=....|.|....+.++| .+ .+||+. +..+..+++.+.+.+.. ......+.+.. .+.. + T Consensus 389 ~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~~~~~~i~~~~~~~~~laq 468 (556) T protein:vir:73 389 EEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKSIGLTSLSQTVGFIGQLAQ 468 (556) T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 222344555555554443 22 123333 22334455555443322 11111111111 1110 1 Q ss_pred -------CcCHHHH----HHHhCCCCCCCCCCceeeecccccccccccccccccCC-------C--ccCCCCCCCCCCCC Q lcl|Aclame:pro 379 -------IYSIDEV----RAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAP-------P--AIDPPAEEPADDEE 438 (457) Q Consensus 379 -------~~T~nE~----R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~ 438 (457) .+..+++ -+.+|.|+. .+..+-.+..+.+....+.+..+ . ....-++....+++ T Consensus 469 ~~Pe~~d~id~d~~~~~~a~~~Gvp~~------~irs~eev~~~rq~r~~~qq~~~~~~~~~~a~~~~~~~~~~~~~~~~ 542 (556) T protein:vir:73 469 FKPEALDKLDVDQAIDAFSEMSGVSPT------VIVPQEQVQGIREERAKQAQAAQAMAMGQAAAQGAKTLSETQTSDPS 542 (556) T ss_pred cChhhHhcCCHHHHHHHHHHHcCCChh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHH Confidence 1233332 223444320 11100000000000000000000 0 00000000000000 Q ss_pred ----cccCCCCccc Q lcl|Aclame:pro 439 ----PDNAEGDPDE 448 (457) Q Consensus 439 ----~~~~~~~~~~ 448 (457) -.+..+.+-+ T Consensus 543 ~l~~~~~~~g~~~~ 556 (556) T protein:vir:73 543 ALTAIANAAGAPQQ 556 (556) T ss_pred HHHHHHHhhcCCCC Confidence 0011111111 No 268 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=32.78 E-value=1.4 Score=19.78 Aligned_cols=406 Identities=12% Similarity=0.069 Sum_probs=154.3 Q ss_pred hhhhhhccccccccccccc----ccccccchhhhc----------ccccccCccccCHHHHhc----cHHHHHHHHHHHH Q lcl|Aclame:pro 3 FWSALFGRGHSPALDAAEG----RAWEPYDPSIYN----------LGATASSGERVTPHDALQ----VSAVFASVRLLSE 64 (457) Q Consensus 3 ~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~----~~~v~~~i~~ia~ 64 (457) ++.. .|+...-....... ..|........+ ..-+......-..+..++ .+++...++.++. T Consensus 1 ~~~~-~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G 79 (491) T protein:vir:95 1 MLTA-NGQGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVG 79 (491) T ss_pred Cccc-CCccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhc Confidence 1110 01100000000000 000000000000 000000000001222333 3445555555555 Q ss_pred hhccCceEEEEeccCceeeecCcchhhhccCCC-CCCCHHHHHHHHHHHHHHcCCeEEEEEecC--C----------cee Q lcl|Aclame:pro 65 TIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEP-GGMGRIDILSQTVLSLLLQGNAFLAVRWAG--P----------NIA 131 (457) Q Consensus 65 ~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn-~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g----------~~~ 131 (457) .+-+-|..+- ....+..++.... ...+-.+|.+.++...+.+|.+++.+-... + ... T Consensus 80 ~vfrk~p~~~----------~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rP 149 (491) T protein:vir:95 80 SVMRKEPEIN----------IPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNP 149 (491) T ss_pred hhhcCCceee----------ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCc Confidence 5555554431 1122333333322 335678999999999999999999986531 1 111 Q ss_pred EEEEeccceeE----------------------EEEcCCCcccceeeEEEEEeee--cccceeEEe----------ccce Q lcl|Aclame:pro 132 GLDVLDPTKIH----------------------VHMVMVDGLRRKVFEAYDIDAD--GNEVLLGWF----------TPRD 177 (457) Q Consensus 132 ~~~~l~p~~v~----------------------~~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~----------~~~e 177 (457) -+..+.|..|. ...+..+++.......|+.-.. ++....+.+ ...+ T Consensus 150 y~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~~~~~~ 229 (491) T protein:vir:95 150 TIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQEEVVE 229 (491) T ss_pred EEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcceeeeee Confidence 23334443331 1111112222221112211000 000000000 0011 Q ss_pred EEE-----------ecc--CCccCCccccchhHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 178 VLH-----------IPG--MMLPGDFVGCSPISYARES-IGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARARE 243 (457) Q Consensus 178 vih-----------~~~--~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~ 243 (457) ++| +-. ....+...+.||+..+... +..+..... ....+...+.|..++......+++..+.... T Consensus 230 ~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd-~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~ 308 (491) T protein:vir:95 230 IYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSAD-NEESSFVVGQPTLFIYPGDNLTPQSFKEANP 308 (491) T ss_pred eeecCCCcccCeeEEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhH-HHHHHHHcccceeeeecCcccCcchhhccCc Confidence 221 110 1112345678888766543 333333333 3344556678888887655555554432211 Q ss_pred HHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 244 AWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTM 323 (457) Q Consensus 244 ~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~~~~~~~e~~~~~~~~ 323 (457) ....-| +...+.++.+.++.-+..+++.+. .+.++....+.+. .| ..++.-. ++.+. .........-. T Consensus 309 --~~i~~g---~~~~~~lP~~~~~~~ie~~~~~~~-~~~l~~~e~qm~~-~G--a~l~~~~--~~~Ta-~~~~~~~~~~~ 376 (491) T protein:vir:95 309 --NGIKFG---SRCGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAIQ-IG--AQLITPS--QQITA-ESARIQRGADT 376 (491) T ss_pred --ceeEec---CcCCcCCCCCCccceeecCcchHH-HHHHHHHHHHHHH-HH--HHhccCC--cchhH-HHHHHHHHHhh Confidence 011122 233466666666555554433332 1222222222111 11 1223211 12222 12223334447 Q ss_pred HHHhhHHHHHHHHHHhhh--cCcc-cc---ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 324 FSLRPWLERIEAGFNRLL--FAET-AD---RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) Q Consensus 324 ~~l~P~~~~ie~~l~~~l--l~~~-~~---~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~nE~R~~~G~~p~~~~ 397 (457) ..|.-++..+|+.+++.| .... +. ....+..+.+.....-..+...++-++++.|.++....++.+-.--+.+. T Consensus 377 S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~ 456 (491) T protein:vir:95 377 SVMATIARNVSQAYTDALRWVAMMLGKPEDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDW 456 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCc Confidence 777888888888888754 1122 11 12234444444333333446777778999999998888776532222211 Q ss_pred CCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccc Q lcl|Aclame:pro 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) Q Consensus 398 ~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457) ..+... ..+.... ...+...+...+..+--+. +.+ T Consensus 457 ~~e~~~-----~~ie~~~-----~~~~~~~~~~~~~~~~~~~------~~~ 491 (491) T protein:vir:95 457 TDEDIL-----NAIEDAP-----LPSGAVTQVAGEIPQAAQQ------QQE 491 (491) T ss_pred cHHHHH-----HHHHhcC-----CCCCccccccccchhhhhh------ccC Confidence 011000 0111110 0000011111110000000 000 No 269 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=21.76 E-value=2.5 Score=18.35 Aligned_cols=404 Identities=15% Similarity=0.078 Sum_probs=149.5 Q ss_pred Cchh--------------hhhhcc-cccccccccccccccccchhhhcccccccCccccCHHHHhccH----HHHHHHHH Q lcl|Aclame:pro 1 MGFW--------------SALFGR-GHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVS----AVFASVRL 61 (457) Q Consensus 1 Mg~~--------------~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~v~~~i~~ 61 (457) |-=. ..+.-- .....+. ..+..+-|..... ..+.-+. -..+..++.+ ++...++. T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r-~~g~~YLP~~~~e----~~~~e~~-~~Y~~rl~rA~~~n~~~~t~~~ 74 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVK-GARTTYLPMPNAE----DQSKENK-ARYEAYLKRAVFYNVARRTLFG 74 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHH-hcccccCcCCCCC----CCcccch-HHHHHHhhccccCchHHHHHHH Confidence 3311 100000 0000000 0000000000000 0000000 0122333333 33344444 Q ss_pred HHHhhccCceEEEEeccCceeeecCcchhhhccCCC-CCCCHHHHHHHHHHHHHHcCCeEEEEEecC--Cc--------- Q lcl|Aclame:pro 62 LSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEP-GGMGRIDILSQTVLSLLLQGNAFLAVRWAG--PN--------- 129 (457) Q Consensus 62 ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~l~~~pn-~~~~~~~f~~~~~~~~l~~G~~~~~i~~~~--g~--------- 129 (457) ++..+-+-|..+ .....+..++.... ...+-.+|.+.++...+.+|.+++.+-... +. T Consensus 75 l~G~vf~k~p~~----------~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~ 144 (501) T protein:vir:95 75 LVGQVFMRDPVV----------KVPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLE 144 (501) T ss_pred HhhhhhcCCcce----------eCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHH Confidence 443333333222 11222333333222 334678999999999999999999985421 11 Q ss_pred ----eeEEEEeccceeEEE--------------------EcCCCcccceeeEEEEEeeecccc--eeEEe---------- Q lcl|Aclame:pro 130 ----IAGLDVLDPTKIHVH--------------------MVMVDGLRRKVFEAYDIDADGNEV--LLGWF---------- 173 (457) Q Consensus 130 ----~~~~~~l~p~~v~~~--------------------~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~---------- 173 (457) ..-+..+.|..|.=+ ...++.+.......|+.-.....+ ..+.+ T Consensus 145 ~~~~rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~ 224 (501) T protein:vir:95 145 AGRIRPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADG 224 (501) T ss_pred hccCCcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCc Confidence 011333444332111 111111111111111110000000 00000 Q ss_pred ---------------c------cce---EEEeccCCccCCccccchhHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEe Q lcl|Aclame:pro 174 ---------------T------PRD---VLHIPGMMLPGDFVGCSPISYARES-IGLALAAQKYGAHFFRNGAMPGAVVE 228 (457) Q Consensus 174 ---------------~------~~e---vih~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~n~~~~~~~~~ 228 (457) + .=. ++++ +....+...+.+|+..+... |..+.....+ ...+...+.|..+++ T Consensus 225 ~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~-~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~-~~~l~~~~~P~l~i~ 302 (501) T protein:vir:95 225 SKIPKGNYQQYVVYKPTDAQGKRLTEIPFMFI-GSENNDSNPDNPNFYDLASLNMAHYRNSADY-EESCYIVGQPTPVLI 302 (501) T ss_pred ceecCCcccccceeeeeccCCCcCCeeeEEEE-ecCCCCCCCCccchHHHHHHHHHHHhhhhHH-HHHHHHcccceeeee Confidence 0 000 1111 11122334567787766532 2333332333 334555667877776 Q ss_pred cCCCCCHHHHHHHHHHHHHHhccccccCcceeccCcceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccc Q lcl|Aclame:pro 229 VPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) Q Consensus 229 ~~~~~~~e~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgvpp~~lg~~~~~~ 308 (457) ... ++..+..... ...-| +...+.++.|.++.-+..+++-+. .+.++....++..+ | ..++... ..+ T Consensus 303 G~~---~~~~~~~~~~--~i~~G---~~~~~~lP~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~~-G--a~ll~~~-~~~ 369 (501) T protein:vir:95 303 GLT---EEWVTNVLKG--SVNFG---SRGGIPLPVGADAKLLQASENTML-KEAMDTKERQMVAL-G--AKLVEQK-EVQ 369 (501) T ss_pred CCc---ccccccCCCC--ceeec---ccccccCCCCCceeEEecChhhHH-HHHHHHHHHHHHHH-H--HhhccCC-ccc Confidence 332 2211110000 01112 234567777776666665544433 23344444444332 3 2233211 112 Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHhhhc--Cccc-c--ccceEEEecchhhhccHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLF--AETA-D--RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSID 383 (457) Q Consensus 309 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~ll--~~~~-~--~~~~~~f~~~~~~~~d~~~~~~~~~~~~~~g~~T~n 383 (457) .+.. .......-....|.-++..+|+++++.|- ..+. . ....+.++.+-.........++++.+++..|.++.. T Consensus 370 ~Ta~-~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~ 448 (501) T protein:vir:95 370 RTAT-EAELEAASEGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFE 448 (501) T ss_pred hhHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHH Confidence 2221 11222233356677788888888886542 1111 1 223455555544444445556777899999999999 Q ss_pred HHHHHhCCCCCCCCCCceeeecccccccccccccccccCCCccCCCCCCCCCCCCcccCCCCccccccc Q lcl|Aclame:pro 384 EVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) Q Consensus 384 E~R~~~G~~p~~~~~gd~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457) ..++.+-.--+.++.-+.-. ..+.............+..+.... |.++-|..+ T Consensus 449 t~~~~L~~~~v~~~~~~~e~-----e~i~~~~~~~~~~~~~~~~~~~~~-----------gg~~~~~~~ 501 (501) T protein:vir:95 449 EMRTGLRKAGVATEDDSKAK-----EKIAKDTAEAMALATPANVPGDGS-----------GGDNVGNSE 501 (501) T ss_pred HHHHHHHhCCCCChhHHHHH-----HHHHhhhcCcccccccCCCCCCCc-----------ccccccCCC Confidence 98877643333221100000 000000000000000000000000 001111111 Done!