Query lcl|Aclame:protein:vir:9267|NCBI_annot:4|genbank:acc:NP_720331;genbank:gi:24371589;genbank:GeneID:955812 Match_columns 166 No_of_seqs 16 out of 22 Neff 3.6 Searched_HMMs 1612 Date Sat Nov 30 09:59:32 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_57 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_57_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:2108 Length: 166 # 100.0 7.6E-86 4.7E-89 487.2 17.0 166 1-166 1-166 (166) 2 protein:vir:9267 Length: 166 # 100.0 1.5E-85 9.3E-89 485.6 17.2 166 1-166 1-166 (166) 3 protein:vir:100918 Length: 166 100.0 2.6E-85 1.6E-88 484.3 17.1 166 1-166 1-166 (166) 4 protein:vir:3528 Length: 160 # 100.0 2.8E-74 1.7E-77 423.8 15.9 158 1-162 2-160 (160) 5 protein:vir:105380 Length: 160 100.0 2.4E-73 1.5E-76 418.7 16.2 158 1-162 2-160 (160) 6 protein:vir:176 Length: 160 # 100.0 2.5E-73 1.5E-76 418.6 16.2 158 1-162 2-160 (160) 7 protein:vir:105524 Length: 166 100.0 1.3E-71 8.1E-75 409.2 16.4 161 1-165 2-166 (166) 8 protein:vir:108311 Length: 249 99.3 1.9E-14 1.2E-17 95.8 12.7 142 2-154 1-249 (249) 9 protein:vir:95323 Length: 201 20.0 2.9 0.0018 18.1 9.7 138 3-149 1-201 (201) 10 protein:vir:1780 Length: 67 # 18.6 3.1 0.0019 17.9 5.5 63 1-70 4-67 (67) No 1 >protein:vir:2108 Length: 166 # NCBI annotation: head completion protein # Family: family:all:1693 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:NP_059632;genbank:gi:9635540;genbank:GeneID:1262828 Probab=100.00 E-value=7.6e-86 Score=487.23 Aligned_cols=166 Identities=97% Similarity=1.444 Sum_probs=165.7 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) |||+||+|||++|||||||+||+|++|||||++|+||++||+||+||+++++||++||+|++++|+|+|||+||||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:21 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccccccccCCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~~~~~~~~~ 160 (166) +||+||||||||++||||++++|+++|++||++||+++|+++++|++||||||+||||+|++|++||||++|++|++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~~~A~~aya~Lls~~~~a~~kR~~y~~dmP~G~Gn~~~~~~~~~y~~~~~~~~~t~p 160 (166) T protein:vir:21 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCCccchhccccccccccccCCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcCCCC Q lcl|Aclame:pro 161 HDEGNG 166 (166) Q Consensus 161 ~~~~~~ 166 (166) |||||| T Consensus 161 ~~~~~~ 166 (166) T protein:vir:21 161 HDEGNG 166 (166) T ss_pred cccCCC Confidence 999999 No 2 >protein:vir:9267 Length: 166 # NCBI annotation: 4 # Family: family:all:1693 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720331;genbank:gi:24371589;genbank:GeneID:955812 Probab=100.00 E-value=1.5e-85 Score=485.63 Aligned_cols=166 Identities=100% Similarity=1.459 Sum_probs=165.7 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) |||+||+|||++|||||||+||+|++|||||++|+||++||+||+||+++++||++||+|++++|+|+|||+||||++|+ T Consensus 1 ~~m~Tkgdiv~~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:92 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceeccccccccCCCCCccccCCCHhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccccccccCCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~~~~~~~~~ 160 (166) +||+||||||||++||||++++++++|+++|++|++++|++++++++||||||+||||+|++|++||||++|++|++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~~y~aLl~~t~~a~~~r~~Y~~dmP~G~Gn~~~~~~~~~y~~~~~~~~~t~p 160 (166) T protein:vir:92 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcCCCccchhccccccccccccCCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcCCCC Q lcl|Aclame:pro 161 HDEGNG 166 (166) Q Consensus 161 ~~~~~~ 166 (166) |||||| T Consensus 161 ~~~~~~ 166 (166) T protein:vir:92 161 HDEGNG 166 (166) T ss_pred cccCCC Confidence 999999 No 3 >protein:vir:100918 Length: 166 # NCBI annotation: Gp4 # Family: family:all:1693 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006410;genbank:gi:46358702;genbank:GeneID:2777068 Probab=100.00 E-value=2.6e-85 Score=484.32 Aligned_cols=166 Identities=96% Similarity=1.446 Sum_probs=165.7 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) |||+||+|||++|||||||+||+|++|||||++|+||++||+||+||+++++||++||+|++++|+|+|||+||||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:10 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIVTGYVFSDDDNPPSEGDDHGLRSSAI 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccccccccCCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~~~~~~~~~ 160 (166) +||+||||||||++|||+++++++++|+++|++|++++|++++++++||||||+||||+|++|++|||||+|++|++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~ay~aLl~~t~~a~~~~~~Y~~dmP~G~Gn~~~~~~~~~y~~~~~~~~~~~p 160 (166) T protein:vir:10 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP 160 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCcCCCccchhcccccccccccccCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcCCCC Q lcl|Aclame:pro 161 HDEGNG 166 (166) Q Consensus 161 ~~~~~~ 166 (166) |||||| T Consensus 161 ~~~~~~ 166 (166) T protein:vir:10 161 HDEGNG 166 (166) T ss_pred cccCCC Confidence 999999 No 4 >protein:vir:3528 Length: 160 # NCBI annotation: P27 # Family: family:all:1693 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050988;genbank:gi:9633574;genbank:GeneID:1262321 Probab=100.00 E-value=2.8e-74 Score=423.85 Aligned_cols=158 Identities=32% Similarity=0.456 Sum_probs=155.0 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) -+|+||||||++|||||||+||||++||||||||+|||+||+||+|| +++||++||+||+++|+|+|||+||||++++ T Consensus 2 ~~~~Tkgdiv~~Alrk~gvas~at~~DvePq~~e~gindLe~MMaeW--~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~ 79 (160) T protein:vir:35 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTSDDASGLPRKYK 79 (160) T ss_pred CccchHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHHHHHHhh--ccCCceeeeeecccCCCCCcccccCCchhHH Confidence 68999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccccccc-cCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQ-NADSTT 159 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~~-~~~~~~ 159 (166) +||+|||||||||+|||+++++++++||+||++|+++++++|+.++ |+|||+||||||+.|+++|||++|. |++.++ T Consensus 80 ~aV~~~LAvria~dyG~~~s~~~~a~A~~ay~~Ll~a~~~~p~~~r--~~~mP~GsGN~~~a~~g~ryy~~r~~~~~~~~ 157 (160) T protein:vir:35 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNTD 157 (160) T ss_pred HHHHHHHHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHhhccccccc--cCCCCcccccccccCCcceeccCceeccCCCC Confidence 9999999999999999999999999999999999999999999998 8899999999999999999999986 999999 Q ss_pred CCc Q lcl|Aclame:pro 160 PHD 162 (166) Q Consensus 160 ~~~ 162 (166) |-. T Consensus 158 p~~ 160 (160) T protein:vir:35 158 PVS 160 (160) T ss_pred cCC Confidence 988 No 5 >protein:vir:105380 Length: 160 # NCBI annotation: gene 7 protein # Family: family:all:1693 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958183;genbank:gi:41057285;genbank:GeneID:2716627 Probab=100.00 E-value=2.4e-73 Score=418.73 Aligned_cols=158 Identities=35% Similarity=0.586 Sum_probs=155.2 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) -||+||||||++|||||||+||+|++|||||++|+|||+||+||+|| +++||+|||+|++++|+|+|||++|||++|+ T Consensus 2 ~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW--~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~ 79 (160) T protein:vir:10 2 ATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEW--MINPGDIGYAFATGDEQPLPDDESGLPRKYK 79 (160) T ss_pred CCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHh--ccCCcceeeeecccCCCCCccccccCChhHH Confidence 69999999999999999999999999999999999999999999999 8999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCccccccccccccccc-ccCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGE-QNADSTT 159 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~-~~~~~~~ 159 (166) +||+|||||||||+|||++|++++++|+++|++|+++++++|+.++ |++||+|+|||+++|+++||||+| .+.|.++ T Consensus 80 ~aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~--~~~mP~gsGn~~~~~~~~~yy~~~~~~~d~~~ 157 (160) T protein:vir:10 80 HAVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSMRR--RGDFPVGQGNKYDVFTSDRYYPGDLPLIDGDI 157 (160) T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhc--cCCCCCCCCCcccccccccccCCCccccCCCC Confidence 9999999999999999999999999999999999999999999997 779999999999999999999998 8889999 Q ss_pred CCc Q lcl|Aclame:pro 160 PHD 162 (166) Q Consensus 160 ~~~ 162 (166) ||- T Consensus 158 ~~~ 160 (160) T protein:vir:10 158 PNA 160 (160) T ss_pred CCC Confidence 998 No 6 >protein:vir:176 Length: 160 # NCBI annotation: DNA stabilization protein # Family: family:all:1693 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112081;genbank:gi:13559871;genbank:GeneID:920968 Probab=100.00 E-value=2.5e-73 Score=418.63 Aligned_cols=158 Identities=35% Similarity=0.584 Sum_probs=155.2 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) -||+||||||++|||||||+||+|++|||||++|+|||+||+||+|| +++||+|||+|++++|+|+|||++|||++|+ T Consensus 2 ~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW--~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~ 79 (160) T protein:vir:17 2 ATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEW--MINPGDIGYAFATGDEQPLPDDESGLPRKYK 79 (160) T ss_pred CCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHh--ccCCcceeeeecccCCCCCccccccCChhHH Confidence 69999999999999999999999999999999999999999999999 8999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCccccccccccccccc-ccCCCCC Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGE-QNADSTT 159 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~-~~~~~~~ 159 (166) +||+|||||||||+|||++|++++++|+++|++|+++++++|+.++ |++||+|+|||+++|+++||||+| .+.|.++ T Consensus 80 ~aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~--~~~mP~gsgn~~~~~~~~~yy~~~~~~~d~~~ 157 (160) T protein:vir:17 80 HAVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSIRR--RGDFPVGQGNKYDVFTSDRYYPGDLPLIDGDI 157 (160) T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhc--cCCCCCCCCCcccccccccccCCCccccCCCC Confidence 9999999999999999999999999999999999999999999997 779999999999999999999998 8889999 Q ss_pred CCc Q lcl|Aclame:pro 160 PHD 162 (166) Q Consensus 160 ~~~ 162 (166) ||- T Consensus 158 ~~~ 160 (160) T protein:vir:17 158 PNA 160 (160) T ss_pred CCC Confidence 998 No 7 >protein:vir:105524 Length: 166 # NCBI annotation: phage DNA stabilization protein # Family: family:all:1693 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516193;genbank:gi:89885996;genbank:GeneID:3964384 Probab=100.00 E-value=1.3e-71 Score=409.20 Aligned_cols=161 Identities=39% Similarity=0.571 Sum_probs=153.2 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCCCCcccccCCCHHHH Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~~~pdD~~gip~~a~ 80 (166) -||+||+|||++|||||||+||+|+|||||||+|+|||+||+||+|| +++||++||+|++++|+|+|||+||||++|+ T Consensus 2 ~~~~TkgeiV~~Alrklgv~s~at~~Dvepq~~~~gv~dLe~MMaeW--~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~ 79 (166) T protein:vir:10 2 PKLLTKGDVVLFALRKCAVASNATLTDVEPQSVTDGLDDLEAMMAEW--RARGIDIGYRFAQDEQTVSPDDPTGVLPLFT 79 (166) T ss_pred CCcchHHHHHHHHHHHhccCcchhhcCCCHHHHHHHHHHHHHHHHHh--ccCcceeeeeecccCCCCCccccccCchhHH Confidence 69999999999999999999999999999999999999999999999 8999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccccccccCCCC-- Q lcl|Aclame:pro 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADST-- 158 (166) Q Consensus 81 ~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~~~~~~~~~~-- 158 (166) +||+|||||||||+|||++|++++++|+++|++|+++++++|+.++ |++||+|||||++.|+++||||+|.++++. T Consensus 80 ~aV~~~LAvria~dygi~~s~~~~s~A~~ay~~Ll~a~~~~p~~~r--~~dmP~GsGN~~~~~~~~~yy~~~~~~~dg~~ 157 (166) T protein:vir:10 80 SAVGYQLMLRVLADYGIAPTPRQEATAHTAYDALLTATLTVPSLKR--RGDMPTGQGNQYDHFISGRYYPDKRENVNGDN 157 (166) T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcccccc--cCCCCcccCcccccccccccccCCccccCccc Confidence 9999999999999999999999999999999999999999999999 779999999999999999999999888764 Q ss_pred --CCCcCCC Q lcl|Aclame:pro 159 --TPHDEGN 165 (166) Q Consensus 159 --~~~~~~~ 165 (166) ||..... T Consensus 158 ~~~~~~~~~ 166 (166) T protein:vir:10 158 AITPAKRSR 166 (166) T ss_pred ccCcccccC Confidence 3333323 No 8 >protein:vir:108311 Length: 249 # NCBI annotation: hypothetical protein # Family: family:all:28027 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552279;genbank:gi:160700604;genbank:GeneID:5758827 Probab=99.35 E-value=1.9e-14 Score=95.83 Aligned_cols=142 Identities=21% Similarity=0.267 Sum_probs=100.0 Q ss_pred ccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhc------------------------------ Q lcl|Aclame:pro 2 QIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDG------------------------------ 51 (166) Q Consensus 2 ~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a------------------------------ 51 (166) --.|+++||..|||++||.--+ .--..++++|++..|++||.+|..+. T Consensus 1 ~sqt~~~II~~ALk~aGvla~G--etp~aee~~DA~~~Ln~Ml~~W~~~rl~V~~~~~~t~vl~~G~~~YtVGi~~~~~~ 78 (249) T protein:vir:10 1 MARTVGDIIRSSMRKIGVLAAG--EPLPANEGDDALEVFAQMVDAWTNETLLIPVVNVVTKVLVENQPEYTIGIYPEPVP 78 (249) T ss_pred CccCHHHHHHHHHHHccccccC--CCCCHhHHHHHHHHHHHHHHHHHhCceeEEeeeeeeeeccCCcceEEeeecccccc Confidence 2369999999999999995322 22346999999999999999996332 Q ss_pred -----CCceecccc-------------------------------------------------------ccCCCC----- Q lcl|Aclame:pro 52 -----KGIITGYIF-------------------------------------------------------SDDDNP----- 66 (166) Q Consensus 52 -----~GI~~Gy~f-------------------------------------------------------a~~~e~----- 66 (166) .+|.+|+.- +++... T Consensus 79 ~~~p~~~i~~~RP~~i~sA~~r~~~d~~~~~~~i~~EdY~rI~~Kt~~~~ps~~f~d~g~p~g~i~vwP~P~~~~tl~~~ 158 (249) T protein:vir:10 79 DPLPSNHIETGRPERILSAFIRDRYDTDYIQEIIDVETYSRISRKTNTSRPSRFYVSKGWPLNTILFESVPYQDETLHLE 158 (249) T ss_pred ccCCCCceEeecchheeeeeeecccccchhhhhhchhhhhhcCCCCCCCCceEEEEcCCCCcceEEEEecCCCCceEEEE Confidence 012223211 011111 Q ss_pred -----------CCcccccCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhccccccCC-CCCCCC Q lcl|Aclame:pro 67 -----------PAEGDDHGLRSSAVSAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPY-PSRMPT 134 (166) Q Consensus 67 -----------~~pdD~~gip~~a~~AV~~nLA~riApdyG~e~~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y-~~~mP~ 134 (166) +++.|+..+|++|..|..+|||++|+|.||+++++.|+..|+.+|..|=+ .+....+ -.+||+ T Consensus 159 v~~pL~~f~~~a~ltd~i~LPpey~~AL~~NLavel~peyG~ev~~~v~~~A~~a~~~ikr-----aN~q~~~l~~~~~~ 233 (249) T protein:vir:10 159 VVQPLSEILPTACLTDVINLPPGYERALIYNLCLELASEWGKEVTALVATQAVEGKKWLKR-----NNYRPLVLGADRAV 233 (249) T ss_pred EEeehhhhccccccchhccCCHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh-----ccCcceeeeccccc Confidence 56677889999999999999999999999999999999999999887731 1222222 257888 Q ss_pred CCCccccccccccccccccc Q lcl|Aclame:pro 135 GSGNSFANLNEWHYFPGEQN 154 (166) Q Consensus 135 G~Gnr~~~~~~~~y~~~~~~ 154 (166) +-|++ +.+.|-++... T Consensus 234 ~~~r~----G~~~~~~~~~~ 249 (249) T protein:vir:10 234 ATQRK----GIGTYIIEQGP 249 (249) T ss_pred ccccC----cceEEEecCCC Confidence 87764 44555555322 No 9 >protein:vir:95323 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:1524 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512268;genbank:gi:89152435;genbank:GeneID:3952992 Probab=19.99 E-value=2.9 Score=18.09 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=68.6 Q ss_pred cchHHHHHHHHHHHhccC-cchhccCCCHHHHH-----HHHHHHHHHHHHHHh--------hcCCceeccc--------- Q lcl|Aclame:pro 3 IKTKGDLARAALRKLGVA-SDATLTDIEPQSMQ-----DAVDDLEAMMAEWYQ--------DGKGIITGYI--------- 59 (166) Q Consensus 3 m~Tk~diV~~ALrklGva-s~at~~DvePq~~e-----~gi~~Le~MMaeW~~--------~a~GI~~Gy~--------- 59 (166) |+|+=||.-.||.+||=+ +=+.+.|-.++... +.+.+--.=++.|.= ...+-..||. T Consensus 1 M~S~v~IcN~AL~~iG~a~~I~s~~e~s~~A~~C~~~Y~~~r~~~L~~~pW~FA~~r~~La~~a~~~~~~~yay~LP~Dc 80 (201) T protein:vir:95 1 MASVVEICNRALSNIGNSRSINSLTEASKEAGECSLHFEACRDAVLSDFDWNFATKRVALADTSNPPPDWEYAYQYPSDC 80 (201) T ss_pred CCCHHHHHHHHHHHhCCcccccccccCCHHHHHHHHhhHHHHHHHHhhcCchhhhhhhhcccccCCCCCCcccccccchh Confidence 999999999999999943 22334443332211 222332223455630 0000001221 Q ss_pred -----------------------------------cccCCCC-----CCcccccCCCHHHHHHHHHHHHHHHHHhhCCCC Q lcl|Aclame:pro 60 -----------------------------------FSDDDNP-----PAEGDDHGLRSSAVSAVFHNLACRIAPDYALEA 99 (166) Q Consensus 60 -----------------------------------fa~~~e~-----~~pdD~~gip~~a~~AV~~nLA~riApdyG~e~ 99 (166) +.+.+.. .+-.|..-.|+-+++|+.+-||-.||...-. T Consensus 81 lrv~~v~~~g~~~~~~~~~~~f~v~~~~~~~g~~l~td~~~~~l~Yv~~v~d~~~fd~~F~~ala~~LAa~la~plt~-- 158 (201) T protein:vir:95 81 LRITEIMLPGVRNPTAAMRVQYEVGADTNGTGKLIYTDQPQAWLKYVSRVTDVNMFDAIFMEALAWRLAAAINMALTG-- 158 (201) T ss_pred hhhhhhccCCccccccccchhhhccccccccCceeeecCCceEEEEeecCCChhhccHHHHHHHHHHHHHHhhHhhcC-- Confidence 1111110 2334556689999999999999888865543 Q ss_pred CHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcccccccccccc Q lcl|Aclame:pro 100 TAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYF 149 (166) Q Consensus 100 ~~~vi~~A~~a~~~Ll~a~~~a~~~~~~y~~~mP~G~Gnr~~~~~~~~y~ 149 (166) +..+...+..-++..++.....-+.-+ |..-|.- +.|...|-= T Consensus 159 ~~~~~~~~~q~~~~~l~~A~~~da~e~--~~~~~~~-----~~~l~aRl~ 201 (201) T protein:vir:95 159 NADLGTFALNMYNRVILSAGSHSQNES--QEPQPPV-----DEFTIARLS 201 (201) T ss_pred ChHHHHHHHHHHHHHHHHHHhcccccC--cccCCCc-----chhhhhhcC Confidence 334566666667766655544433322 1111111 112222222 No 10 >protein:vir:1780 Length: 67 # NCBI annotation: tail protein B # Family: family:all:824 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570346;genbank:gi:18640505;genbank:GeneID:932718 Probab=18.63 E-value=3.1 Score=17.87 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=45.4 Q ss_pred CccchHHHHHHHHHHHhccCcchhccCCCHHHHHHHHHHHHHHHHHHHhhcCCceeccccccCCCC-CCcc Q lcl|Aclame:pro 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNP-PAEG 70 (166) Q Consensus 1 ~~m~Tk~diV~~ALrklGvas~at~~DvePq~~e~gi~~Le~MMaeW~~~a~GI~~Gy~fa~~~e~-~~pd 70 (166) .+.+|+=|-|-.-||.+|=++=.++.+ .=.++..+.+.|+....+= ++ -||-|--+.+- ..|| T Consensus 4 ~~~~teLdAVN~~L~aIGesPV~sld~-~npdva~a~~iL~~v~~~v--qs----eGW~FNte~~~~ltPd 67 (67) T protein:vir:17 4 IKRTSELDALNVKMTNIGQQPIVNINN-TNPQVALAKTVLNQVTSDV--LT----EGWIFNRELDYPLTPQ 67 (67) T ss_pred ccccchhhHHHHHHHhhCccccccccC-CCccHHHHHHHHHHHHHHH--hh----CCceeeccCceeecCC Confidence 677888888988999999876555543 3448999999999999884 33 36888755432 4455 Done!