Query lcl|Aclame:protein:vir:1587|NCBI_annot:minor capsid protein|genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Match_columns 508 No_of_seqs 123 out of 236 Neff 8.5 Searched_HMMs 1612 Date Sat Nov 30 09:57:08 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_30 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_30_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:1587 Length: 508 # 100.0 2E-157 1E-160 879.3 60.2 508 1-508 1-508 (508) 2 protein:vir:79703 Length: 505 100.0 2E-146 1E-149 819.4 58.5 497 1-502 1-505 (505) 3 protein:vir:4782 Length: 522 # 100.0 4E-143 2E-146 801.5 57.7 498 1-508 1-521 (522) 4 protein:vir:98883 Length: 517 100.0 2E-142 1E-145 797.3 57.9 496 1-508 1-515 (517) 5 protein:vir:9815 Length: 500 # 100.0 3E-141 2E-144 790.7 59.1 493 1-508 1-500 (500) 6 protein:vir:3028 Length: 500 # 100.0 3E-141 2E-144 790.7 59.1 493 1-508 1-500 (500) 7 protein:vir:80959 Length: 499 100.0 9E-132 6E-135 738.9 57.1 489 3-506 1-499 (499) 8 protein:vir:38 Length: 496 # N 100.0 4E-125 2E-128 702.8 57.5 488 3-506 1-496 (496) 9 protein:vir:78907 Length: 518 100.0 4E-113 2E-116 637.0 53.5 481 1-507 1-518 (518) 10 protein:vir:5961 Length: 503 # 100.0 8.1E-61 5E-64 350.0 45.2 461 1-508 13-501 (503) 11 protein:vir:105461 Length: 470 100.0 1.9E-60 1.2E-63 348.0 43.3 450 1-508 1-470 (470) 12 protein:vir:79043 Length: 479 100.0 2.4E-58 1.5E-61 336.5 45.1 463 1-508 1-477 (479) 13 protein:vir:96240 Length: 511 100.0 1.2E-57 7.2E-61 332.7 46.7 463 1-508 1-498 (511) 14 protein:vir:99781 Length: 511 100.0 3.9E-57 2.4E-60 329.9 46.0 463 1-508 1-511 (511) 15 protein:vir:96179 Length: 468 100.0 1.7E-58 1.1E-61 337.2 37.5 449 3-508 1-466 (468) 16 protein:vir:97447 Length: 474 100.0 2.7E-58 1.7E-61 336.2 38.2 447 3-508 1-470 (474) 17 protein:vir:94498 Length: 474 100.0 2.7E-58 1.7E-61 336.2 38.2 447 3-508 1-470 (474) 18 protein:vir:106639 Length: 481 100.0 1.1E-56 6.8E-60 327.4 45.8 455 1-507 6-481 (481) 19 protein:vir:95113 Length: 474 100.0 1.2E-57 7.7E-61 332.6 40.5 446 3-508 1-470 (474) 20 protein:vir:78805 Length: 511 100.0 1.5E-56 9.3E-60 326.6 45.9 463 1-508 11-498 (511) 21 protein:vir:96366 Length: 511 100.0 1.5E-56 9.3E-60 326.6 45.9 463 1-508 11-498 (511) 22 protein:vir:102950 Length: 471 100.0 7.9E-57 4.9E-60 328.2 43.4 446 1-508 1-471 (471) 23 protein:vir:96839 Length: 474 100.0 1.3E-56 8.3E-60 326.9 44.4 453 1-508 1-468 (474) 24 protein:vir:106571 Length: 499 100.0 4.1E-56 2.6E-59 324.2 46.7 449 1-508 1-485 (499) 25 protein:vir:105292 Length: 478 100.0 7.7E-57 4.8E-60 328.2 41.1 451 1-508 1-475 (478) 26 protein:vir:94546 Length: 506 100.0 3.9E-56 2.4E-59 324.4 44.2 456 1-508 3-500 (506) 27 protein:vir:4898 Length: 502 # 100.0 1.8E-55 1.1E-58 320.7 47.6 459 1-508 11-489 (502) 28 protein:vir:9306 Length: 511 # 100.0 1.2E-55 7.7E-59 321.6 46.7 463 1-508 1-500 (511) 29 protein:vir:97171 Length: 512 100.0 1.2E-55 7.4E-59 321.7 46.5 446 1-508 31-501 (512) 30 protein:vir:103951 Length: 511 100.0 1.9E-55 1.2E-58 320.6 47.4 463 1-508 1-500 (511) 31 protein:vir:107112 Length: 478 100.0 1.5E-56 9.6E-60 326.6 40.3 451 1-508 1-478 (478) 32 protein:vir:9922 Length: 489 # 100.0 1.8E-55 1.1E-58 320.8 45.9 445 1-508 13-481 (489) 33 protein:vir:96494 Length: 501 100.0 5.9E-55 3.7E-58 317.9 47.5 459 1-508 8-486 (501) 34 protein:vir:78083 Length: 537 100.0 3.1E-55 1.9E-58 319.4 45.8 459 1-508 8-522 (537) 35 protein:vir:2732 Length: 501 # 100.0 5.7E-55 3.5E-58 318.0 46.7 459 1-508 10-486 (501) 36 protein:vir:99522 Length: 470 100.0 1.5E-54 9.4E-58 315.6 47.3 452 1-508 1-468 (470) 37 protein:vir:95899 Length: 474 100.0 6.8E-55 4.2E-58 317.6 43.5 446 3-508 1-471 (474) 38 protein:vir:96266 Length: 474 100.0 6.8E-55 4.2E-58 317.6 43.5 446 3-508 1-471 (474) 39 protein:vir:1236 Length: 483 # 100.0 1E-54 6.3E-58 316.6 43.9 443 7-508 1-479 (483) 40 protein:vir:93747 Length: 472 100.0 1.2E-54 7.3E-58 316.3 43.7 450 1-508 5-464 (472) 41 protein:vir:3964 Length: 453 # 100.0 1.6E-54 1E-57 315.5 44.4 437 1-508 1-452 (453) 42 protein:vir:3609 Length: 452 # 100.0 3.7E-54 2.3E-57 313.5 45.6 425 1-508 6-449 (452) 43 protein:vir:94805 Length: 492 100.0 2E-54 1.2E-57 315.0 43.9 454 1-508 4-488 (492) 44 protein:vir:95806 Length: 440 100.0 1E-54 6.5E-58 316.5 41.3 427 26-508 1-438 (440) 45 protein:vir:97336 Length: 492 100.0 2.7E-54 1.7E-57 314.3 43.5 454 1-508 4-484 (492) 46 protein:vir:102330 Length: 451 100.0 2.2E-54 1.4E-57 314.7 41.0 428 19-504 1-451 (451) 47 protein:vir:9871 Length: 429 # 100.0 1.3E-53 7.9E-57 310.6 42.6 424 6-508 1-429 (429) 48 protein:vir:105889 Length: 474 100.0 5.6E-53 3.5E-56 307.0 45.0 447 1-508 1-469 (474) 49 protein:vir:94101 Length: 474 100.0 5.6E-53 3.5E-56 307.0 45.0 447 1-508 1-469 (474) 50 protein:vir:733 Length: 453 # 100.0 6.5E-52 4E-55 301.2 43.3 442 1-508 1-452 (453) 51 protein:vir:78227 Length: 480 100.0 4.4E-46 2.7E-49 269.3 43.9 437 1-508 1-462 (480) 52 protein:vir:78537 Length: 480 100.0 9.8E-46 6.1E-49 267.3 44.8 440 1-508 1-462 (480) 53 protein:vir:7768 Length: 484 # 100.0 5.3E-45 3.3E-48 263.3 41.4 432 1-508 14-467 (484) 54 protein:vir:2427 Length: 485 # 100.0 3.9E-45 2.4E-48 264.0 40.0 442 17-508 1-483 (485) 55 protein:vir:7987 Length: 456 # 100.0 4.3E-45 2.7E-48 263.8 39.5 440 1-508 1-453 (456) 56 protein:vir:2500 Length: 501 # 100.0 1E-43 6.2E-47 256.3 44.6 451 1-508 22-498 (501) 57 protein:vir:104082 Length: 485 100.0 2.2E-43 1.3E-46 254.5 45.2 440 1-508 8-483 (485) 58 protein:vir:4223 Length: 486 # 100.0 4.7E-43 2.9E-46 252.6 45.8 439 1-507 6-486 (486) 59 protein:vir:99072 Length: 479 100.0 1.9E-44 1.2E-47 260.2 37.8 432 3-508 1-470 (479) 60 protein:vir:80680 Length: 441 100.0 1.3E-43 8.2E-47 255.7 40.8 431 3-508 1-437 (441) 61 protein:vir:2341 Length: 488 # 100.0 3.4E-43 2.1E-46 253.4 42.4 435 1-508 10-484 (488) 62 protein:vir:105819 Length: 456 100.0 1.2E-43 7.3E-47 256.0 38.8 445 1-508 1-455 (456) 63 protein:vir:102602 Length: 456 100.0 1.2E-43 7.3E-47 256.0 38.8 445 1-508 1-455 (456) 64 protein:vir:99916 Length: 504 100.0 1.1E-40 7.1E-44 239.6 41.5 445 1-508 1-487 (504) 65 protein:vir:98444 Length: 434 100.0 4.2E-39 2.6E-42 231.0 39.7 407 56-507 1-434 (434) 66 protein:vir:8184 Length: 474 # 100.0 1E-36 6.2E-40 217.9 36.7 449 1-508 10-474 (474) 67 protein:vir:9568 Length: 410 # 100.0 1E-33 6.3E-37 201.4 40.0 399 33-495 1-410 (410) 68 protein:vir:9751 Length: 422 # 100.0 6.2E-34 3.8E-37 202.6 36.3 409 1-492 1-422 (422) 69 protein:vir:1634 Length: 409 # 100.0 4.1E-32 2.6E-35 192.6 34.2 398 1-477 1-409 (409) 70 protein:vir:94742 Length: 409 100.0 4E-32 2.5E-35 192.7 34.0 399 1-477 1-409 (409) 71 protein:vir:7430 Length: 563 # 100.0 2.1E-31 1.3E-34 188.8 35.7 479 1-508 1-533 (563) 72 protein:vir:101494 Length: 527 100.0 1.1E-31 6.6E-35 190.4 32.1 467 1-508 1-516 (527) 73 protein:vir:102239 Length: 527 100.0 1.3E-31 7.9E-35 190.0 32.1 467 1-508 1-516 (527) 74 protein:vir:94956 Length: 452 99.7 4.6E-16 2.8E-19 104.7 38.5 425 22-508 1-452 (452) 75 protein:vir:80453 Length: 535 99.7 4E-14 2.5E-17 94.1 40.4 438 1-508 46-527 (535) 76 protein:vir:97265 Length: 513 99.7 1.9E-14 1.2E-17 95.8 38.5 436 22-508 1-501 (513) 77 protein:vir:95149 Length: 501 99.7 7.5E-14 4.7E-17 92.5 41.5 429 30-508 1-501 (501) 78 protein:vir:93630 Length: 776 99.7 2.9E-15 1.8E-18 100.3 31.3 468 1-508 44-647 (776) 79 protein:vir:96783 Length: 488 99.6 1.2E-13 7.4E-17 91.4 37.3 429 1-492 14-488 (488) 80 protein:vir:95014 Length: 491 99.6 4E-13 2.5E-16 88.6 37.4 436 14-508 1-484 (491) 81 protein:vir:8846 Length: 705 # 99.6 1.3E-14 8E-18 96.7 28.6 463 1-508 10-608 (705) 82 protein:vir:78393 Length: 489 99.6 8.4E-13 5.2E-16 86.8 40.7 427 18-508 1-479 (489) 83 protein:vir:80040 Length: 461 99.6 1.2E-14 7.6E-18 96.8 26.4 421 1-507 1-461 (461) 84 protein:vir:108295 Length: 711 99.6 5.6E-13 3.5E-16 87.8 35.4 471 1-508 29-644 (711) 85 protein:vir:80165 Length: 651 99.5 1.9E-12 1.2E-15 84.8 32.5 468 1-508 1-602 (651) 86 protein:vir:5249 Length: 437 # 99.4 1.4E-12 8.6E-16 85.6 28.3 397 1-508 1-435 (437) 87 protein:vir:79538 Length: 502 99.4 1.7E-11 1E-14 79.7 38.3 430 1-508 1-501 (502) 88 protein:vir:95542 Length: 548 99.3 8.2E-11 5.1E-14 75.9 34.9 439 1-508 1-510 (548) 89 protein:vir:104437 Length: 714 99.3 1.8E-10 1.1E-13 74.0 35.9 468 1-508 17-616 (714) 90 protein:vir:105619 Length: 772 99.3 1.1E-10 7E-14 75.1 30.0 486 1-508 1-631 (772) 91 protein:vir:9950 Length: 714 # 99.3 2.8E-10 1.7E-13 72.9 37.0 470 1-508 6-613 (714) 92 protein:vir:2764 Length: 714 # 99.3 2.8E-10 1.7E-13 72.9 37.0 470 1-508 6-613 (714) 93 protein:vir:3296 Length: 714 # 99.3 2.8E-10 1.7E-13 72.9 37.0 470 1-508 6-613 (714) 94 protein:vir:10117 Length: 714 99.3 2.8E-10 1.7E-13 72.9 37.0 470 1-508 6-613 (714) 95 protein:vir:817 Length: 714 # 99.3 2.8E-10 1.7E-13 72.9 37.0 470 1-508 6-613 (714) 96 protein:vir:96068 Length: 765 99.2 1.9E-11 1.2E-14 79.3 23.6 435 1-508 37-535 (765) 97 protein:vir:107742 Length: 537 99.2 9.6E-11 6E-14 75.5 27.2 433 1-508 25-523 (537) 98 protein:vir:79647 Length: 435 99.2 3.8E-11 2.4E-14 77.7 24.5 407 1-508 1-435 (435) 99 protein:vir:95449 Length: 584 99.2 2.1E-10 1.3E-13 73.6 26.5 458 1-499 1-584 (584) 100 protein:vir:77597 Length: 725 99.1 1.6E-09 9.6E-13 68.9 32.9 470 1-508 1-590 (725) 101 protein:vir:99563 Length: 862 99.1 4.2E-10 2.6E-13 72.0 25.8 430 1-508 66-561 (862) 102 protein:vir:104338 Length: 422 99.1 5.3E-10 3.3E-13 71.4 26.3 386 1-508 1-422 (422) 103 protein:vir:389 Length: 530 # 99.1 2E-09 1.2E-12 68.3 33.7 432 18-508 1-527 (530) 104 protein:vir:9263 Length: 725 # 99.1 2.1E-09 1.3E-12 68.1 30.0 477 1-508 5-595 (725) 105 protein:vir:107662 Length: 427 99.1 5.6E-10 3.5E-13 71.3 24.2 389 1-506 1-427 (427) 106 protein:vir:96738 Length: 505 99.0 3.9E-09 2.4E-12 66.7 35.8 430 1-508 8-504 (505) 107 protein:vir:105429 Length: 708 99.0 3.9E-09 2.4E-12 66.7 34.4 481 3-508 1-601 (708) 108 protein:vir:3420 Length: 533 # 99.0 4E-09 2.5E-12 66.6 34.2 436 1-508 1-526 (533) 109 protein:vir:100920 Length: 725 99.0 4.6E-09 2.8E-12 66.3 29.9 474 1-508 1-592 (725) 110 protein:vir:94049 Length: 532 99.0 3.6E-09 2.2E-12 66.9 26.5 437 1-508 17-510 (532) 111 protein:vir:95821 Length: 763 99.0 6.8E-09 4.2E-12 65.4 36.8 462 1-508 26-633 (763) 112 protein:vir:1785 Length: 555 # 99.0 8.9E-09 5.5E-12 64.7 31.7 429 7-508 1-550 (555) 113 protein:vir:172 Length: 708 # 98.9 5.3E-09 3.3E-12 66.0 24.7 479 3-508 1-601 (708) 114 protein:vir:78696 Length: 542 98.9 1.8E-08 1.1E-11 63.0 32.4 454 7-508 1-540 (542) 115 protein:vir:94709 Length: 522 98.8 3.1E-08 2E-11 61.7 30.3 448 1-508 1-517 (522) 116 protein:vir:105520 Length: 706 98.8 4.3E-08 2.6E-11 61.0 29.7 479 3-508 1-599 (706) 117 protein:vir:3361 Length: 535 # 98.8 5.2E-08 3.2E-11 60.5 35.5 449 3-508 1-522 (535) 118 protein:vir:3520 Length: 720 # 98.8 5.3E-08 3.3E-11 60.4 33.5 476 3-508 1-600 (720) 119 protein:vir:10321 Length: 495 98.7 7.6E-08 4.7E-11 59.6 33.3 428 1-508 1-494 (495) 120 protein:vir:63755 Length: 547 98.7 1.1E-07 6.6E-11 58.8 26.9 428 1-508 1-523 (547) 121 protein:vir:1538 Length: 535 # 98.7 1.1E-07 6.7E-11 58.8 36.0 449 3-508 1-521 (535) 122 protein:vir:7321 Length: 556 # 98.7 1.2E-07 7.7E-11 58.4 32.7 458 3-508 1-541 (556) 123 protein:vir:81072 Length: 432 98.7 1.3E-07 8.1E-11 58.3 25.3 396 1-508 7-432 (432) 124 protein:vir:98506 Length: 555 98.6 1.5E-07 9.4E-11 58.0 33.1 460 18-508 1-554 (555) 125 protein:vir:107822 Length: 555 98.6 1.5E-07 9.4E-11 58.0 33.1 460 18-508 1-554 (555) 126 protein:vir:107404 Length: 555 98.6 1.5E-07 9.4E-11 58.0 33.1 460 18-508 1-554 (555) 127 protein:vir:102855 Length: 432 98.6 1.9E-07 1.2E-10 57.4 30.1 402 1-508 1-432 (432) 128 protein:vir:105002 Length: 432 98.6 1.9E-07 1.2E-10 57.4 30.1 402 1-508 1-432 (432) 129 protein:vir:107605 Length: 432 98.6 1.9E-07 1.2E-10 57.4 30.1 402 1-508 1-432 (432) 130 protein:vir:80644 Length: 551 98.6 1.9E-07 1.2E-10 57.4 24.4 430 1-508 5-527 (551) 131 protein:vir:102668 Length: 547 98.6 2.1E-07 1.3E-10 57.2 31.9 451 1-508 1-540 (547) 132 protein:vir:95315 Length: 559 98.6 2.1E-07 1.3E-10 57.2 34.3 457 3-508 1-557 (559) 133 protein:vir:6382 Length: 553 # 98.6 2.3E-07 1.4E-10 56.9 35.3 448 3-508 1-553 (553) 134 protein:vir:81152 Length: 411 98.6 2.7E-07 1.7E-10 56.6 28.8 389 1-508 1-410 (411) 135 protein:vir:3139 Length: 599 # 98.5 3.7E-07 2.3E-10 55.8 26.6 482 1-508 1-596 (599) 136 protein:vir:94572 Length: 535 98.5 4.5E-07 2.8E-10 55.4 32.5 449 1-508 1-521 (535) 137 protein:vir:8883 Length: 543 # 98.5 4.7E-07 2.9E-10 55.3 31.2 452 1-508 1-523 (543) 138 protein:vir:2198 Length: 536 # 98.5 5.4E-07 3.4E-10 54.9 31.9 449 1-508 1-534 (536) 139 protein:vir:6240 Length: 457 # 98.5 5.7E-07 3.5E-10 54.8 24.7 402 1-508 1-449 (457) 140 protein:vir:94599 Length: 641 98.5 5.9E-07 3.7E-10 54.7 32.9 459 1-508 23-600 (641) 141 protein:vir:100039 Length: 522 98.4 6.2E-07 3.8E-10 54.6 32.6 432 1-508 1-505 (522) 142 protein:vir:10447 Length: 536 98.4 7.1E-07 4.4E-10 54.3 34.3 449 1-508 1-532 (536) 143 protein:vir:97060 Length: 432 98.4 7.3E-07 4.5E-10 54.2 25.1 390 1-508 7-428 (432) 144 protein:vir:10362 Length: 432 98.4 8.4E-07 5.2E-10 53.9 26.8 389 1-508 7-428 (432) 145 protein:vir:102080 Length: 429 98.4 9.2E-07 5.7E-10 53.7 29.3 399 1-508 1-429 (429) 146 protein:vir:3843 Length: 397 # 98.3 1.3E-06 8.4E-10 52.8 26.7 381 1-508 1-395 (397) 147 protein:vir:100187 Length: 385 98.3 1.5E-06 9E-10 52.6 23.6 373 1-508 1-384 (385) 148 protein:vir:1326 Length: 457 # 98.3 1.5E-06 9.2E-10 52.5 25.4 400 1-508 1-446 (457) 149 protein:vir:79772 Length: 648 98.2 2.1E-06 1.3E-09 51.7 32.5 437 1-508 8-492 (648) 150 protein:vir:1380 Length: 422 # 98.2 2.5E-06 1.6E-09 51.3 26.3 403 1-508 1-422 (422) 151 protein:vir:4952 Length: 386 # 98.2 3E-06 1.8E-09 50.9 28.4 369 1-508 1-383 (386) 152 protein:vir:78942 Length: 510 98.1 3.9E-06 2.4E-09 50.2 34.4 438 7-506 1-510 (510) 153 protein:vir:103330 Length: 517 98.1 4.5E-06 2.8E-09 49.9 28.6 430 1-508 1-517 (517) 154 protein:vir:6322 Length: 510 # 98.0 6E-06 3.8E-09 49.2 34.3 436 7-508 1-510 (510) 155 protein:vir:100882 Length: 383 98.0 9.1E-06 5.6E-09 48.2 26.4 372 1-508 1-383 (383) 156 protein:vir:3153 Length: 467 # 98.0 9.4E-06 5.8E-09 48.1 31.2 384 57-508 1-443 (467) 157 protein:vir:1266 Length: 416 # 97.9 1.2E-05 7.3E-09 47.6 27.8 389 18-507 1-416 (416) 158 protein:vir:4454 Length: 414 # 97.9 1.5E-05 9E-09 47.1 29.0 389 1-508 1-410 (414) 159 protein:vir:8418 Length: 409 # 97.8 1.5E-05 9.3E-09 47.0 27.1 384 1-508 1-408 (409) 160 protein:vir:104500 Length: 537 97.8 1.5E-05 9.4E-09 47.0 24.3 442 14-508 1-510 (537) 161 protein:vir:4854 Length: 386 # 97.8 1.8E-05 1.1E-08 46.6 24.3 372 1-508 1-385 (386) 162 protein:vir:100249 Length: 431 97.8 1.9E-05 1.2E-08 46.5 24.3 399 1-500 1-431 (431) 163 protein:vir:4156 Length: 542 # 97.8 2E-05 1.3E-08 46.3 28.5 407 3-508 1-465 (542) 164 protein:vir:103765 Length: 549 97.8 2.2E-05 1.3E-08 46.2 31.9 460 1-508 1-536 (549) 165 protein:vir:4194 Length: 540 # 97.7 2.4E-05 1.5E-08 45.9 29.6 406 3-508 1-463 (540) 166 protein:vir:100150 Length: 437 97.6 4.4E-05 2.7E-08 44.5 28.2 401 1-508 1-436 (437) 167 protein:vir:101647 Length: 460 97.5 6.3E-05 3.9E-08 43.6 26.7 401 3-506 1-460 (460) 168 protein:vir:99672 Length: 532 97.4 7.3E-05 4.6E-08 43.2 30.6 452 1-508 1-532 (532) 169 protein:vir:4995 Length: 384 # 97.3 9.2E-05 5.7E-08 42.7 26.6 367 1-508 1-381 (384) 170 protein:vir:96988 Length: 516 97.2 0.00012 7.4E-08 42.1 29.4 433 14-508 1-511 (516) 171 protein:vir:103177 Length: 533 97.2 0.00012 7.5E-08 42.1 23.2 439 15-508 1-516 (533) 172 protein:vir:1884 Length: 424 # 97.2 0.00012 7.6E-08 42.0 25.5 376 1-505 14-424 (424) 173 protein:vir:95378 Length: 406 97.2 0.00014 8.8E-08 41.7 26.3 377 1-508 1-404 (406) 174 protein:vir:102727 Length: 945 97.2 0.00014 8.8E-08 41.7 29.1 405 1-508 60-528 (945) 175 protein:vir:4598 Length: 416 # 97.1 0.00016 1E-07 41.3 29.5 385 1-508 1-413 (416) 176 protein:vir:81095 Length: 416 97.1 0.00016 1E-07 41.3 29.5 385 1-508 1-413 (416) 177 protein:vir:7407 Length: 392 # 97.1 0.00017 1E-07 41.3 25.2 375 1-508 3-388 (392) 178 protein:vir:483 Length: 413 # 97.1 0.00017 1E-07 41.3 25.4 388 18-508 1-409 (413) 179 protein:vir:6210 Length: 394 # 97.1 0.00019 1.2E-07 41.0 23.9 376 1-508 1-393 (394) 180 protein:vir:1082 Length: 359 # 97.1 0.00019 1.2E-07 41.0 26.8 344 1-474 1-359 (359) 181 protein:vir:7853 Length: 518 # 97.0 0.00022 1.4E-07 40.7 28.0 395 26-508 1-432 (518) 182 protein:vir:4828 Length: 382 # 96.9 0.00025 1.6E-07 40.3 26.6 369 1-508 1-381 (382) 183 protein:vir:105641 Length: 516 96.9 0.00029 1.8E-07 40.0 30.9 437 3-508 1-511 (516) 184 protein:vir:95599 Length: 563 96.8 0.00031 1.9E-07 39.8 26.9 426 1-508 2-531 (563) 185 protein:vir:99312 Length: 563 96.8 0.00031 1.9E-07 39.8 26.9 426 1-508 2-531 (563) 186 protein:vir:80796 Length: 574 96.8 0.00033 2E-07 39.7 27.9 432 1-508 9-524 (574) 187 protein:vir:7017 Length: 515 # 96.8 0.00036 2.2E-07 39.5 31.6 437 3-508 1-510 (515) 188 protein:vir:1023 Length: 392 # 96.7 0.00039 2.4E-07 39.3 26.1 374 1-508 3-388 (392) 189 protein:vir:3989 Length: 392 # 96.7 0.00039 2.4E-07 39.3 26.1 374 1-508 3-388 (392) 190 protein:vir:93610 Length: 454 96.7 0.00043 2.6E-07 39.1 26.8 391 3-508 1-433 (454) 191 protein:vir:101648 Length: 518 96.6 0.00046 2.8E-07 38.9 28.7 393 18-508 1-436 (518) 192 protein:vir:80211 Length: 514 96.6 0.0005 3.1E-07 38.7 31.9 434 11-508 1-510 (514) 193 protein:vir:8100 Length: 466 # 96.6 0.0005 3.1E-07 38.7 26.4 417 1-508 1-466 (466) 194 protein:vir:4337 Length: 434 # 96.4 0.00068 4.2E-07 37.9 26.6 397 3-503 1-434 (434) 195 protein:vir:105782 Length: 449 96.4 0.00068 4.2E-07 37.9 27.9 411 3-508 1-446 (449) 196 protein:vir:102118 Length: 409 96.4 0.0007 4.3E-07 37.9 25.6 383 18-508 1-408 (409) 197 protein:vir:9408 Length: 441 # 96.3 0.00076 4.7E-07 37.7 29.8 371 47-508 1-441 (441) 198 protein:vir:79984 Length: 441 96.3 0.00076 4.7E-07 37.7 29.8 371 47-508 1-441 (441) 199 protein:vir:189 Length: 424 # 96.2 0.00093 5.8E-07 37.2 27.1 381 1-505 14-424 (424) 200 protein:vir:98396 Length: 441 96.1 0.00098 6.1E-07 37.1 29.5 371 47-508 1-441 (441) 201 protein:vir:345 Length: 663 # 95.5 0.0019 1.2E-06 35.5 26.0 452 1-508 1-596 (663) 202 protein:vir:103219 Length: 201 95.2 0.0009 5.6E-07 37.3 10.3 185 263-497 1-201 (201) 203 protein:vir:106999 Length: 564 95.2 0.0026 1.6E-06 34.8 21.3 453 15-508 1-536 (564) 204 protein:vir:106716 Length: 698 94.9 0.0033 2E-06 34.2 19.3 434 1-508 46-542 (698) 205 protein:vir:100691 Length: 535 94.7 0.0037 2.3E-06 33.9 34.0 426 1-508 1-515 (535) 206 protein:vir:2683 Length: 412 # 94.5 0.0042 2.6E-06 33.6 31.6 386 1-507 1-412 (412) 207 protein:vir:78589 Length: 695 94.5 0.0043 2.7E-06 33.5 22.4 419 1-508 46-545 (695) 208 protein:vir:9359 Length: 348 # 94.5 0.0044 2.7E-06 33.5 27.1 331 84-507 1-348 (348) 209 protein:vir:96980 Length: 409 94.0 0.0057 3.5E-06 32.9 30.4 384 1-507 4-409 (409) 210 protein:vir:3648 Length: 695 # 94.0 0.0058 3.6E-06 32.8 22.2 419 1-508 31-545 (695) 211 protein:vir:100598 Length: 516 93.6 0.0071 4.4E-06 32.4 22.6 444 1-502 1-516 (516) 212 protein:vir:79063 Length: 491 93.5 0.0075 4.7E-06 32.2 26.7 388 1-508 3-417 (491) 213 protein:vir:1661 Length: 378 # 93.4 0.0078 4.8E-06 32.1 16.0 354 1-508 1-378 (378) 214 protein:vir:105064 Length: 421 93.3 0.008 4.9E-06 32.1 29.5 382 1-508 1-415 (421) 215 protein:vir:101541 Length: 694 93.3 0.0082 5.1E-06 32.0 22.5 414 1-508 41-544 (694) 216 protein:vir:101189 Length: 516 93.1 0.0089 5.5E-06 31.8 27.8 426 1-502 1-516 (516) 217 protein:vir:101806 Length: 516 93.1 0.0089 5.5E-06 31.8 27.8 426 1-502 1-516 (516) 218 protein:vir:107880 Length: 491 92.5 0.011 6.9E-06 31.3 28.0 384 1-508 15-417 (491) 219 protein:vir:106282 Length: 521 92.4 0.012 7.2E-06 31.2 30.6 429 1-504 1-521 (521) 220 protein:vir:3868 Length: 417 # 92.1 0.013 8.1E-06 30.9 23.7 377 18-508 1-411 (417) 221 protein:vir:960 Length: 413 # 91.8 0.014 8.7E-06 30.8 27.3 380 1-508 1-412 (413) 222 protein:vir:104259 Length: 403 91.5 0.016 9.7E-06 30.5 31.4 372 1-508 1-403 (403) 223 protein:vir:99853 Length: 488 91.5 0.016 9.8E-06 30.5 29.2 375 24-508 1-409 (488) 224 protein:vir:5737 Length: 419 # 90.9 0.018 1.1E-05 30.1 29.5 378 18-508 1-412 (419) 225 protein:vir:103860 Length: 528 90.8 0.019 1.2E-05 30.0 26.9 408 1-508 1-449 (528) 226 protein:vir:4089 Length: 395 # 90.4 0.021 1.3E-05 29.8 21.2 374 1-508 1-394 (395) 227 protein:vir:94426 Length: 409 90.1 0.023 1.4E-05 29.6 27.0 385 1-508 4-407 (409) 228 protein:vir:9702 Length: 406 # 89.9 0.024 1.5E-05 29.5 27.7 378 1-508 1-404 (406) 229 protein:vir:96579 Length: 576 89.8 0.024 1.5E-05 29.5 29.0 431 3-508 1-526 (576) 230 protein:vir:99232 Length: 526 89.6 0.025 1.6E-05 29.3 28.2 405 1-508 1-445 (526) 231 protein:vir:104892 Length: 558 89.0 0.029 1.8E-05 29.0 29.0 432 1-508 5-525 (558) 232 protein:vir:78161 Length: 355 88.7 0.031 1.9E-05 28.9 20.4 292 154-508 1-324 (355) 233 protein:vir:94002 Length: 378 88.7 0.031 1.9E-05 28.9 14.1 334 1-508 1-378 (378) 234 protein:vir:80134 Length: 403 88.2 0.034 2.1E-05 28.7 22.7 372 1-508 1-401 (403) 235 protein:vir:6596 Length: 521 # 88.2 0.034 2.1E-05 28.7 31.9 428 1-504 2-521 (521) 236 protein:vir:108215 Length: 469 87.6 0.037 2.3E-05 28.4 27.4 398 27-508 1-453 (469) 237 protein:vir:81017 Length: 521 86.6 0.045 2.8E-05 28.0 32.3 430 1-504 2-521 (521) 238 protein:vir:4509 Length: 424 # 86.3 0.046 2.9E-05 27.9 25.3 380 1-508 16-424 (424) 239 protein:vir:7208 Length: 524 # 85.8 0.05 3.1E-05 27.7 26.1 429 1-504 1-524 (524) 240 protein:vir:103458 Length: 524 85.6 0.052 3.2E-05 27.6 26.1 429 1-504 1-524 (524) 241 protein:vir:79233 Length: 526 85.3 0.054 3.3E-05 27.6 28.8 409 1-508 1-445 (526) 242 protein:vir:5839 Length: 533 # 85.2 0.055 3.4E-05 27.5 25.5 419 1-508 4-482 (533) 243 protein:vir:93943 Length: 409 85.0 0.056 3.5E-05 27.4 31.4 389 1-507 4-409 (409) 244 protein:vir:9507 Length: 395 # 84.0 0.064 4E-05 27.1 23.2 367 18-508 1-395 (395) 245 protein:vir:101289 Length: 395 84.0 0.064 4E-05 27.1 23.2 367 18-508 1-395 (395) 246 protein:vir:100650 Length: 395 84.0 0.064 4E-05 27.1 23.2 367 18-508 1-395 (395) 247 protein:vir:6896 Length: 523 # 82.8 0.073 4.6E-05 26.8 23.5 420 1-504 45-523 (523) 248 protein:vir:5665 Length: 511 # 82.3 0.078 4.8E-05 26.7 26.9 409 24-502 1-511 (511) 249 protein:vir:93867 Length: 378 77.7 0.12 7.6E-05 25.6 16.4 334 1-508 1-378 (378) 250 protein:vir:1431 Length: 419 # 76.4 0.14 8.4E-05 25.3 30.4 386 18-508 1-413 (419) 251 protein:vir:8317 Length: 409 # 74.4 0.16 9.8E-05 25.0 23.7 379 1-508 1-408 (409) 252 protein:vir:1986 Length: 512 # 73.5 0.17 0.0001 24.8 26.6 402 1-508 1-438 (512) 253 protein:vir:108049 Length: 524 71.1 0.2 0.00012 24.4 28.6 420 1-504 1-524 (524) 254 protein:vir:95965 Length: 385 70.2 0.21 0.00013 24.3 20.6 361 18-508 1-385 (385) 255 protein:vir:94666 Length: 723 61.8 0.35 0.00022 23.1 29.3 378 35-508 1-440 (723) 256 protein:vir:98643 Length: 395 57.4 0.43 0.00027 22.6 19.0 369 1-508 1-394 (395) 257 protein:vir:81218 Length: 423 53.1 0.54 0.00033 22.1 29.4 389 1-508 1-419 (423) 258 protein:vir:98265 Length: 524 47.3 0.71 0.00044 21.4 30.7 425 1-504 1-524 (524) 259 protein:vir:99452 Length: 651 40.5 0.97 0.0006 20.7 28.1 408 1-508 78-541 (651) 260 protein:vir:95254 Length: 488 39.5 1 0.00063 20.5 27.9 421 18-508 1-478 (488) 261 protein:vir:858 Length: 378 # 33.5 1.4 0.00084 19.9 17.6 346 1-508 1-376 (378) 262 protein:vir:98853 Length: 219 27.0 1.9 0.0012 19.1 17.2 202 174-446 1-219 (219) 263 protein:vir:94869 Length: 378 25.6 2 0.0013 18.9 26.6 345 1-508 1-376 (378) 264 protein:vir:78310 Length: 376 24.4 2.2 0.0014 18.7 21.5 353 1-507 1-376 (376) No 1 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=2.3e-157 Score=879.28 Aligned_cols=508 Identities=100% Similarity=1.427 Sum_probs=498.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++||+||||++++||+.++|++|++|++|++|++|+++|.+|++||+|+++|+++++..|.+++++++|+|+|+.| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) |+++|+|||+||++|+|++++.++++|++++++|+|..+++++++.|+++|++|||||||+++++|++|+|++|+|++++ T Consensus 81 ~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~~~d 160 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) T ss_pred HHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCCeeEEEEEcCCeeEEEEEc Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) ++++++++|++++.+.+..++++||+||+|+|.++|+|+|+|++|++.+.+++|.+|||+++|+|++|+++++++|+++| T Consensus 161 ~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p 240 (508) T protein:vir:15 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) T ss_pred CCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcc Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcccceEeeec Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVL 320 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (508) +|+|||+|++||++.+||+|+|+|++++++||+||++||+++|+|++|+++|+||+++++++++++++|+.++++|+++. T Consensus 241 ~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~~~~~~~~~~~~~~~~~~ 320 (508) T protein:vir:15 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVL 320 (508) T ss_pred eeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcCCCCCccccCCCCeeEEecc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDE 400 (508) Q Consensus 321 ~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~ 400 (508) .+++++.+|+++||+||+++|.++++.++++|++.||+|+++||+++++.+|||||++++++|++++++|++.|+.+|++ T Consensus 321 ~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~~~~~~~~~al~~ 400 (508) T protein:vir:15 321 SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDE 400 (508) T ss_pred CCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHH Q lcl|Aclame:pro 401 LCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAE 480 (508) Q Consensus 401 li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~ 480 (508) |+++|+++++.++++..+.+.+...++..+++|+|+|+|++++|++++++++++++++|+||++++|++|||||||||++ T Consensus 401 lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~~~~g~~deea~~ 480 (508) T protein:vir:15 401 LCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAE 480 (508) T ss_pred HHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCChHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 481 ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 481 e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |++||++|++++++.+++.++.+|+||| T Consensus 481 el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 481 ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred HHHHHHHhccccCccccccccCCCCCCC Confidence 9999999999999999999999999999 No 2 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=1.9e-146 Score=819.43 Aligned_cols=497 Identities=45% Similarity=0.757 Sum_probs=467.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++||+||||+++++++.++|++|++|++|+++++|+++|+.|++||+|+|+|+++++..+.++.++++|+|+|+.| T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~slnl~~~i 80 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQSVNVTKLA 80 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCccccceeecchHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) |+++|+|||+|||+|++++ +..+++|++++++|+|..+++++++.|+++|++|||||||+++++|++|+|++++|++++ T Consensus 81 ~~~~A~ll~~e~~~i~~~d-~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~~i~~v~ad~~~P~~~d 159 (505) T protein:vir:79 81 SAKLASLIFNEQCQVTVSD-ETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGKIKLAWATADQVYPLQAD 159 (505) T ss_pred HHHHHhhhcCCCceeecCC-hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCceEEEEEcCCeeEEEEEc Confidence 9999999999999999976 456889999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) ++++++++|+.+++..+.+++.+||++|+|+|++ ++|+|+|++|++.+.+.+|.+|||+++|+|++|+++++++|+++| T Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~-~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p 238 (505) T protein:vir:79 160 TNQVNELAIASRTTEVENHRTIYYTLLEFHQWDH-GDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHP 238 (505) T ss_pred CCCeEEEEEEEEEEEecCCcceEEEEEEEEEecC-ceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcc Confidence 9999999999999988888888999999999986 689999999999999999999999999999999999999999999 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC--------ccCCcc Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK--------PTFDTE 312 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~--------~~~~~~ 312 (508) +|+|||+|.+||++.+||+|+|+|++++++||+||++||+++|+|+.|+.+|+||++|++.++.++ +.|+.+ T Consensus 239 ~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~~~~fd~~ 318 (505) T protein:vir:79 239 LFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQASETHPPMFDPD 318 (505) T ss_pred eEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcccccccccCCCcc Confidence 999999999999999999999999999999999999999999999999999999999998765542 358888 Q ss_pred cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 313 QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 313 ~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) .++|.++..++ ++.+++++||+||+++|+++++.++++|+++||||+++||++++|.+|||||++++++|++++++|++ T Consensus 319 ~~~y~~~~~~~-~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~l~~t~~~~~~ 397 (505) T protein:vir:79 319 ETVYQAMYGDA-SEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNSQTYQTRSSYIT 397 (505) T ss_pred ceeeeeccCCC-CCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHhHHHHHHHHHHH Confidence 89999887754 45679999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCC Q lcl|Aclame:pro 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYG 472 (508) Q Consensus 393 ~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~ 472 (508) .|+.+|++|+++|+++++.+++.+.+.....+ +.++++|+|+|+|++++|+++++++.++++++|+||++++|++||| T Consensus 398 ~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~--~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~~~~~ 475 (505) T protein:vir:79 398 QVEKTIKALTYAILELASVPSFYADGQARWTG--DVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKKQFLMRNYG 475 (505) T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCC Confidence 99999999999999999999988888765543 4456789999999999999999999999999999999999999999 Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 473 MTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 473 ~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) ||||||++|++||++|+++.+++....+++ T Consensus 476 ~~eeea~~el~ri~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 476 LDEEEADEWLAQIDAENSTAEPEFNQFGGD 505 (505) T ss_pred CChHHHHHHHHHHHHhccccCCCchhccCC Confidence 999999999999999998766555433333 No 3 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=3.6e-143 Score=801.52 Aligned_cols=498 Identities=42% Similarity=0.703 Sum_probs=460.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++||+||||++++++ .+++.+|++|++|+++++|+.+|..|++||+|++++++++...+...+++++|+|+|+.| T Consensus 1 m~~~~~~k~~~~k~~~~~~-~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i 79 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQ-TSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTA 79 (522) T ss_pred CchHHHHHHHHHHHHHHhh-cccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHH Confidence 9999999999999999984 778999999999999999999999999999999999999998898889999999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) |+++|+|||+||++|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+|++++|++|+ T Consensus 80 ~~~~A~lv~~e~~~i~v~d-~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~~v~ad~~~P~~~~ 158 (522) T protein:vir:47 80 SKKIASLVYNEQATITTKN-EILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVAFIQAPVFFPLESN 158 (522) T ss_pred HHHHhhhhcCCcceeecCC-hHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCceEEEEEcCCceEEEEEc Confidence 9999999999999999965 567899999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC-----------CceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD-----------NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~-----------~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) ++++++|+|+.+.++...++.++||+||+|+|.+ +++|+|+|++|++.+.+++|.+|||+++|+|++|+ T Consensus 159 ~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~ 238 (522) T protein:vir:47 159 TQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLE 238 (522) T ss_pred CCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCC Confidence 9999999999999888878889999999999854 35799999999999999999999999999999999 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC---- Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH---- 305 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~---- 305 (508) ++++++|+++|+|+|||+|.+||++.+||||+|+|++++++||+||++||+++|+++.|+.+|+||++|++.++.+ T Consensus 239 ~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~ 318 (522) T protein:vir:47 239 PVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGT 318 (522) T ss_pred CceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCCCcc Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874332 Q ss_pred ---CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 306 ---KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 306 ---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) .+.|+.++++|+++..+.+++.+++++||+||+++|.++++.++++|+++||||+++||+++++.+|||||++++++ T Consensus 319 ~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTAtEi~s~~~~ 398 (522) T protein:vir:47 319 IDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEIVSENSD 398 (522) T ss_pred cccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccccccHHHHHHHHHH Confidence 24678889999999988778889999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) +++|+++|++.|+.+|++|+++|++|++.+++++.. +..+++|+|+|+|++++|++++++++++++++|+|| T Consensus 399 ~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~--------~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~s 470 (522) T protein:vir:47 399 TYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGE--------IPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFST 470 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--------CCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCCC Confidence 999999999999999999999999999988776543 335678999999999999999999999999999999 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-c----cccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-R----SAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-~----~~~~~~~~g~ 508 (508) ++++|+++||||||||++|++||++|+++..+... . ......+|+| T Consensus 471 ~e~~i~~~~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~ 521 (522) T protein:vir:47 471 KKRAIGKTLNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKADDK 521 (522) T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCC Confidence 99999999999999999999999999876544322 2 1112223333 No 4 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=2.1e-142 Score=797.29 Aligned_cols=496 Identities=39% Similarity=0.623 Sum_probs=463.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |+||++||+||||+++.|+ .++++++++|++|+++++|+++|..|++||+|+++|++++...+..++++++|+|+|+.| T Consensus 1 m~~~~~ik~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i 79 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALS-GQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) T ss_pred CchHHHHHHHHHHHHHHhc-ccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHH Confidence 9999999999999999998 499999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcH----------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVR 150 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~ 150 (508) |+++|+|||+||++|++++.+ .++++|++++++|+|...++++++.|+++|+++||||||+++++|++|+ T Consensus 80 ~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~I~~v~ 159 (517) T protein:vir:98 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) T ss_pred HHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCeeEEEEEc Confidence 999999999999999997632 3689999999999999999999999999999999999999999999999 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC----CceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD----NGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~----~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) |++|+|+.++++++++|+|++...+...++.++||+||+|+|.. .|+|+|+|++|++.+.+.+|.+|||+++ |+ T Consensus 160 ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~--~e 237 (517) T protein:vir:98 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL--YE 237 (517) T ss_pred CCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCcccccccccccc--cc Confidence 99999999999999999999887777777888999999999974 4689999999999999999999999999 67 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC- Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH- 305 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~- 305 (508) +|++.++++|+++|+|+||++|.+|+++.+||+|+|+|++++++||+||++||+++|+|+.|+.+|+||++|++.+.++ T Consensus 238 ~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~l~~~~~~~ 317 (517) T protein:vir:98 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) T ss_pred CCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhhhccccCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999766543 Q ss_pred ----CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHH Q lcl|Aclame:pro 306 ----KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNS 381 (508) Q Consensus 306 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~ 381 (508) +..|+.++++|.++..++ ++.+++++||+||+++|+++++.+|++|+++||||+++||+++.+.+|||||+++++ T Consensus 318 g~~~~~~~d~~~~~y~~~~~~~-~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~s~~~ 396 (517) T protein:vir:98 318 GMPPPQVFDPDVNVYKSIRMGT-DEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) T ss_pred CcccCCCCCcccceeeeccCCC-CCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHHHHHH Confidence 245788889999998754 556899999999999999999999999999999999999999999999999999999 Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 382 MTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGAL 461 (508) Q Consensus 382 ~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~ 461 (508) ++++|++++++.|+.+|++|+++|+++++++++++... +.+++|+|+|+|++++|++++++++++++++|+| T Consensus 397 ~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~--------~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~m 468 (517) T protein:vir:98 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEI--------PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCC Confidence 99999999999999999999999999999988765442 3457899999999999999999999999999999 Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 462 SKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 462 s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+++||++++|+|||||++|++||++|++++++.+......++.+|| T Consensus 469 s~~~~i~~~~g~~eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~gd 515 (517) T protein:vir:98 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) T ss_pred CHHHHHHHhCCCChHHHHHHHHHHHHhccccCCCCccccccCCCCCC Confidence 99999999999999999999999999999888877777777666666 No 5 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=3.3e-141 Score=790.73 Aligned_cols=493 Identities=42% Similarity=0.710 Sum_probs=458.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++||+||||++++|+ .++|+++++|++|++|++|+++|++|++||+|++++++++...+..+.++++|+|+|+.| T Consensus 1 m~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i 79 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMT-TQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTA 79 (500) T ss_pred CchHHHHHHHHHHHHHHhh-cchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHH Confidence 9999999999999999985 799999999999999999999999999999999999998888888888899999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) |+++|+|||+||++|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+|++|+|++++ T Consensus 80 ~~~~A~lv~~e~~~i~~~d-~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d 158 (500) T protein:vir:98 80 AKKIASLVFNEQAEIKVDD-DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSN 158 (500) T ss_pred HHHHhhhhcCCcceEecCC-hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEc Confidence 9999999999999999965 567899999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) ++++++++|+.++.....++.++||+||+|+|+++++|+|+|++|++.+++.+|.+|||+++ |++|+++++++|+++| T Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~--~~~l~~~~~~~~~~~p 236 (500) T protein:vir:98 159 TQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEV--YKDLKDEAKVTDVTRP 236 (500) T ss_pred CCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccc--cCCcCcceEeccCCCc Confidence 99999999999888777678899999999999998889999999999999999999999999 7899999999999999 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC-------CccCCccc Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH-------KPTFDTEQ 313 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~-------~~~~~~~~ 313 (508) +|+||++|++|+++.+||+|+|+|++++++||+||++||+++|+|+.|+++|+||++|++.++.+ .+.|+.++ T Consensus 237 ~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~~d~~~ 316 (500) T protein:vir:98 237 IFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRPRFESDQ 316 (500) T ss_pred cEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCcccCCCc Confidence 99999999999999999999999999999999999999999999999999999999999865433 34678888 Q ss_pred ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 314 ~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~ 393 (508) ++|..++.+++++.++++++|+||+++|.++++.+|++|+++||||+++||++++|.+|||||++++++++++++++++. T Consensus 317 ~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~~~~~ 396 (500) T protein:vir:98 317 NVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNSIVAL 396 (500) T ss_pred ceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHHHHHH Confidence 99999988777778999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCC Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGM 473 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~ 473 (508) |+.+|++|+++|+++++.++++... ...+++|+|+|+|++++|++++++++++++++|+||++++|++++|| T Consensus 397 ~~~al~~lv~~il~~~~~~~~~~~~--------~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~ 468 (500) T protein:vir:98 397 VEQSLKELVISIFEIAKAYDLYQSE--------VPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNV 468 (500) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--------CCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCC Confidence 9999999999999999887765432 33467899999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 474 TDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 474 ~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |||||++|++||++|+++.... .+...|.-|| T Consensus 469 ~eeea~~~l~~i~~E~~~~~~~---~~~~~~~~g~ 500 (500) T protein:vir:98 469 TEEKAQEIAAEINTGIVDEINQ---QRTDTHLYGE 500 (500) T ss_pred CHHHHHHHHHHHHHhccccCCC---CCccccccCC Confidence 9999999999999998644333 3345555566 No 6 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=3.3e-141 Score=790.73 Aligned_cols=493 Identities=42% Similarity=0.710 Sum_probs=458.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++||+||||++++|+ .++|+++++|++|++|++|+++|++|++||+|++++++++...+..+.++++|+|+|+.| T Consensus 1 m~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i 79 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMT-TQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTA 79 (500) T ss_pred CchHHHHHHHHHHHHHHhh-cchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHH Confidence 9999999999999999985 799999999999999999999999999999999999998888888888899999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) |+++|+|||+||++|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+|++|+|++++ T Consensus 80 ~~~~A~lv~~e~~~i~~~d-~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d 158 (500) T protein:vir:30 80 AKKIASLVFNEQAEIKVDD-DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSN 158 (500) T ss_pred HHHHhhhhcCCcceEecCC-hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEc Confidence 9999999999999999965 567899999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) ++++++++|+.++.....++.++||+||+|+|+++++|+|+|++|++.+++.+|.+|||+++ |++|+++++++|+++| T Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~--~~~l~~~~~~~~~~~p 236 (500) T protein:vir:30 159 TQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEV--YKDLKDEAKVTDVTRP 236 (500) T ss_pred CCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccc--cCCcCcceEeccCCCc Confidence 99999999999888777678899999999999998889999999999999999999999999 7899999999999999 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC-------CccCCccc Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH-------KPTFDTEQ 313 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~-------~~~~~~~~ 313 (508) +|+||++|++|+++.+||+|+|+|++++++||+||++||+++|+|+.|+++|+||++|++.++.+ .+.|+.++ T Consensus 237 ~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~~d~~~ 316 (500) T protein:vir:30 237 IFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRPRFESDQ 316 (500) T ss_pred cEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCcccCCCc Confidence 99999999999999999999999999999999999999999999999999999999999865433 34678888 Q ss_pred ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 314 ~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~ 393 (508) ++|..++.+++++.++++++|+||+++|.++++.+|++|+++||||+++||++++|.+|||||++++++++++++++++. T Consensus 317 ~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~~~~~ 396 (500) T protein:vir:30 317 NVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNSIVAL 396 (500) T ss_pred ceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHHHHHH Confidence 99999988777778999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCC Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGM 473 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~ 473 (508) |+.+|++|+++|+++++.++++... ...+++|+|+|+|++++|++++++++++++++|+||++++|++++|| T Consensus 397 ~~~al~~lv~~il~~~~~~~~~~~~--------~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~ 468 (500) T protein:vir:30 397 VEQSLKELVISIFEIAKAYDLYQSE--------VPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNV 468 (500) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--------CCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCC Confidence 9999999999999999887765432 33467899999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 474 TDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 474 ~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |||||++|++||++|+++.... .+...|.-|| T Consensus 469 ~eeea~~~l~~i~~E~~~~~~~---~~~~~~~~g~ 500 (500) T protein:vir:30 469 TEEKAQEIAAEINTGIVDEINQ---QRTDTHLYGE 500 (500) T ss_pred CHHHHHHHHHHHHHhccccCCC---CCccccccCC Confidence 9999999999999998644333 3345555566 No 7 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=9.3e-132 Score=738.94 Aligned_cols=489 Identities=29% Similarity=0.540 Sum_probs=445.7 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC--CCccccccccccchHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS--DGIKKKRLKNTINMAKTA 80 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~~n~~~~i 80 (508) ||++||++||..+.+|+..++|+++++|.+|+++++|+.+|..|++||+|+|+.++.+.. .+....++++|+|+|+.| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~i 80 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHHH Confidence 999999999999999999999999999999999999999999999999999998876543 344556788999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQS 159 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~ 159 (508) |+++|+|||+||++|++++ +.++++|++++++|+|+.++.++++.|+++|++|+|||+|+ |+++|.+++|++++|+++ T Consensus 81 v~~~a~~l~~ep~~i~~~d-~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a~~~~Pi~~ 159 (499) T protein:vir:80 81 AKYMSKLLFNEKVKINIDD-ETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSN 159 (499) T ss_pred HHHHHHhhhCCcceEeeCC-HHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcCCceEEEEe Confidence 9999999999999999965 55789999999999999999999999999999999999984 789999999999999999 Q ss_pred cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCC--ceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 160 NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDN--GSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 160 d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~--g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +++++++|+|++.+.. ++++||+||+|+|.+. ++|+|+|++|++.+.+.+|.+||+.++ |+++++.+.++|+ T Consensus 160 d~~~~~~~~f~~~~~~----~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~--~~~~~~~~~~~~~ 233 (499) T protein:vir:80 160 DSENVDECLIANSFHK----NNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLL--FNDIEPVVPLPSL 233 (499) T ss_pred cCCCeEEEEEEEEEee----cCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhh--ccCcCCceeecCC Confidence 9999999999988764 4579999999999764 479999999999999999999999998 7899999999999 Q ss_pred CcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCC----CCCccCCccc Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDD----EHKPTFDTEQ 313 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~----~~~~~~~~~~ 313 (508) ++|+|+|||+|.+|+++.+||+|+|+|++++++||+||+++|+++|+|++++.+|+||++|++.++ ...+.|+.++ T Consensus 234 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~~~~~~~~~~ 313 (499) T protein:vir:80 234 TRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTTQYFDSTD 313 (499) T ss_pred CccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCCCcccCCCccc Confidence 999999999999999999999999999999999999999999999999999999999999997543 3345688899 Q ss_pred ceEeeecCCC-CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDD-NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 314 ~~~~~~~~~~-~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) ++|..+...+ +++.++++++|+||+++|++.++.++++|++.||||+++||++++|.+||||+++++++|+++++++++ T Consensus 314 ~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~~~ 393 (499) T protein:vir:80 314 EAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQ 393 (499) T ss_pred ceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHHHH Confidence 9999887544 445689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCC Q lcl|Aclame:pro 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYG 472 (508) Q Consensus 393 ~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~ 472 (508) +|+.+|++|+++|++++++++.++... ....+|+|+|+|++++|++++++++++++++|+||++++|++||| T Consensus 394 ~~~~~l~~l~~~il~~~~~~~~~~~~~--------~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~~~ 465 (499) T protein:vir:80 394 LIEQGIKEMIVSILEVGKLIKAYDGDT--------VELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRAWN 465 (499) T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCC--------CCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhcCC Confidence 999999999999999999887665432 245689999999999999999999999999999999999999999 Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCcccccCCCCC Q lcl|Aclame:pro 473 MTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGD 506 (508) Q Consensus 473 ~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~ 506 (508) +||+||++|++||++|++.+.++++..+++|..+ T Consensus 466 ~~d~ea~~el~~i~~E~~~~~~~~d~~g~~ge~e 499 (499) T protein:vir:80 466 ITEAEADEWAEMLAKEKQAEIPNNDMTGIFGEEE 499 (499) T ss_pred CChHHHHHHHHHHHHHhhcCCCCCCccccCCCCC Confidence 9999999999999999987766554333333222 No 8 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=3.6e-125 Score=702.84 Aligned_cols=488 Identities=29% Similarity=0.539 Sum_probs=443.1 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC--CCccccccccccchHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS--DGIKKKRLKNTINMAKTA 80 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~~n~~~~i 80 (508) ||++||.+||..+++||.+++++.+++|++|+++++++++|..|++||+|+|+.++.+.. .+...+++++|+|+|+.| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i 80 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHH Confidence 999999999999999999999999999999999999999999999999999998876543 445566788999999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQS 159 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~ 159 (508) |+++|+|||++||+|++++ +..+++|++++++|+|..++.++++.|+++|++|++||+|+ |++++.+++|+++||+++ T Consensus 81 ~~~~a~~l~~~p~~i~~~d-~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~~~~~~P~~~ 159 (496) T protein:vir:38 81 AKYMSKLLFNEKVKINIDD-KAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSN 159 (496) T ss_pred HHHHhhhhhCCcceEeeCC-hHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEcccceEEEEe Confidence 9999999999999999965 45678999999999999999999999999999999999995 889999999999999999 Q ss_pred cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCc Q lcl|Aclame:pro 160 NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQR 239 (508) Q Consensus 160 d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~ 239 (508) +++++++++|++++.. ++++|++||+|+|++ ++|+|+|++|++.+++.+|++||++++ |+++++...++|+++ T Consensus 160 ~~~~~~~~~f~~~~~~----~~~~y~~le~h~~~~-~~~~I~~~~y~~~~~~~~g~~v~~~~~--~~~~~~~~~~~~~~~ 232 (496) T protein:vir:38 160 DSENVDECVIANSFHK----NNKYYTLLEWNEWQG-DVYTVTTELYQSDDPNELGTKVSLTLL--FDDIEPVVPLPDFTR 232 (496) T ss_pred cCCcEEEEEEEEEEEe----CCeEEEEEEEEEEeC-ceEEEEEEEEecCCccccCcccccccc--ccccccceeecCCCc Confidence 9999999999988754 567999999999986 589999999999999999999999998 668899999999999 Q ss_pred ceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCC----CCCccCCcccce Q lcl|Aclame:pro 240 PLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDD----EHKPTFDTEQNV 315 (508) Q Consensus 240 ~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~----~~~~~~~~~~~~ 315 (508) |+|+|+++|.+|+++.+||+|+|+|++++++||+||+++|+++|+|++++++|+||+++++..+ .+...|+.++++ T Consensus 233 ~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g~~~~~~~~~~~~ 312 (496) T protein:vir:38 233 PTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTTQYFDSTDEA 312 (496) T ss_pred ceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCCccccCCCCccce Confidence 9999999999999999999999999999999999999999999999999999999999996533 234568888888 Q ss_pred EeeecCCC-CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 316 YVGVLSDD-NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 316 ~~~~~~~~-~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) |.++..++ +++.+++.++|+||+++|++.++.++++|++.||+|+++||++++|.+||||+++++++|++++++++++| T Consensus 313 ~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~ 392 (496) T protein:vir:38 313 FFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLI 392 (496) T ss_pred EEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 88877654 44568999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCC Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMT 474 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~ 474 (508) +.+|++|+++|+++++.++.+... .....+|+|+|+|+++.|++++++++++++++|+||++|+|++|||+| T Consensus 393 ~~~l~~l~~~il~~~~~~~~~~g~--------~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~ 464 (496) T protein:vir:38 393 EQGIKEMIVSILEVGKFIEAYSGE--------VVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNIT 464 (496) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--------CCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCC Confidence 999999999999999887654322 234567999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccccCCCCC Q lcl|Aclame:pro 475 DEQAAEELAKIQSEAPTDTFEGGRSAILNGGD 506 (508) Q Consensus 475 deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~ 506 (508) |+||++|++||++|++...++++..+..++.+ T Consensus 465 d~ea~~el~ri~~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 465 EAEADEWAEMLAKEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred hHHHHHHHHHHHHhhhccCccccccCCCCCCC Confidence 99999999999999987766554444333333 No 9 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=3.7e-113 Score=637.00 Aligned_cols=481 Identities=14% Similarity=0.115 Sum_probs=396.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCc------c--CCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQ------A--SDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~------~--~~~~~~~~~~~ 72 (508) ||+|..||++++ .+.+ +..++..+++|..++++|.+....++.+ + .......++++ T Consensus 1 ~~~~~~~~~~i~-~w~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 64 (518) T protein:vir:78 1 MGVWSVMTRFIK-GWLN---------------GKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLM 64 (518) T ss_pred CcchhhHHHHHH-Hhhc---------------CCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccccccc Confidence 999999999874 3333 2234456677777777776664332211 0 01223356778 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeC-----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVK-----DNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIA 147 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~-----~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~ 147 (508) |+|||+.||+++|+|||+||++|+|+ +++.++++|++++++|+|..++.++++.|+++|++|||||||+|+++|+ T Consensus 65 ~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~ 144 (518) T protein:vir:78 65 NSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSIS 144 (518) T ss_pred cCChHHHHHHHHHHhhcCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCeeEEE Confidence 99999999999999999999999985 3567899999999999999999999999999999999999999999999 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC-------CceEEEEEEEEecCCcccc-Cccc-- Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD-------NGSYQITNELYKSDSPDIV-GNQV-- 217 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~-------~g~~~I~~~ly~~~~~~~l-G~~v-- 217 (508) +|+|++|+|++ .+|++++|+|+.+... .+++++||+||+|+|.+ +++|+|+|++|+++....+ +..+ T Consensus 145 ~v~ad~~~P~~-~~g~~~~~~f~~~~~~--~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~ 221 (518) T protein:vir:78 145 VHSSSQFWIDF-KNNEPFRFNFFEEIPT--SNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERL 221 (518) T ss_pred EEcCCeeEEEe-ecCcEEEEEEEEEeec--CCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccccccccccc Confidence 99999999985 5688999999987765 34567999999998643 4679999999997543322 1222 Q ss_pred --cccccccccCCCcceee-cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 218 --PLSTLPVYKELAPQVTI-SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV 294 (508) Q Consensus 218 --~l~~~~~~~~l~~~~~~-~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v 294 (508) ++..+..|+++.+++.+ +|.+.|+|.+++++.+|+++.+||||+|+|++++++||+||++||+++|+|++|+++|+| T Consensus 222 ~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v 301 (518) T protein:vir:78 222 PEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAA 301 (518) T ss_pred ccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceeee Confidence 23334556666666554 555556666668888999999999999999999999999999999999999999999999 Q ss_pred chHHhcCCCCCC-----ccCCcccceEeeecCCCCCC----CcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccc Q lcl|Aclame:pro 295 QPGMLRFDDEHK-----PTFDTEQNVYVGVLSDDNNG----LGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSY 365 (508) Q Consensus 295 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 365 (508) |+++++.++.+. +.|+.++++|++++.+.+.+ ..++++||+||+++|.+.++.+|+.|++.||||+++||+ T Consensus 302 ~~~~l~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~ 381 (518) T protein:vir:78 302 SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNL 381 (518) T ss_pred chhHhccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCc Confidence 999998765543 46888999999987654322 359999999999999999999999999999999999998 Q ss_pred cccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCH Q lcl|Aclame:pro 366 SNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNK 445 (508) Q Consensus 366 ~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~ 445 (508) + ++.+|||||++++++|+++++++++.++.+|++|+++++++++.+...... .....+++|+|+|+|++++|+ T Consensus 382 ~-~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~------~~~~~~~~v~i~f~D~i~~D~ 454 (518) T protein:vir:78 382 G-NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEK------AIMRDEIRVIIEFPDPMSVNL 454 (518) T ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc------ccCCCceeEEEEeCCCCCCCH Confidence 6 567999999999999999999999999999999999999998876432211 233456789999999999999 Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHhccCCC-CCCcccccCCCCCC Q lcl|Aclame:pro 446 DKQLEEDAKVLAIGALSKQTFLQR-NYGMTDEQAAEELAKIQSEAPTDT-FEGGRSAILNGGDG 507 (508) Q Consensus 446 ~~e~~~~~~~~~~Gi~s~et~l~~-~~~~~deea~~e~~ri~~E~~~~~-~~~~~~~~~~~~~g 507 (508) +++++++++++++|+||+++++++ ||+||||||++|++||++|++..+ ++++..+++....| T Consensus 455 ~~~~~~~~~~v~aGimS~e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 455 NELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 999999999999999999999865 899999999999999999998655 44556777888888 No 10 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=8.1e-61 Score=350.04 Aligned_cols=461 Identities=13% Similarity=0.083 Sum_probs=310.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC---------CCccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS---------DGIKKKRLK 71 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---------~~~~~~~~~ 71 (508) |.+...+++........ ....|++..+ ..+..++..+.+||.|+|++.+.... ....+.+.| T Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~i~~~i~-------~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~r 83 (503) T protein:vir:59 13 EELNEIIVESAKEIAEP--DTTMIQKLID-------EHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNR 83 (503) T ss_pred HhHHHhhhhhhhhccch--hHHHHHHHHH-------hhcHHHHHHHHHHhccccchhhccchhcccccccccccccccce Confidence 55555455544322111 1122333322 22457899999999999976543211 112234457 Q ss_pred cccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEc Q lcl|Aclame:pro 72 NTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVR 150 (508) Q Consensus 72 ~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~ 150 (508) +++|||+.||++.|+|+|++|+++++++ +.++++|+.+++ |+|...+.+++..|+.+|.+|+++|+|+ |++++.+++ T Consensus 84 i~~n~~~~ivd~~~~yl~g~~~~~~~~d-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~ 161 (503) T protein:vir:59 84 TSHAWHKLFVDQKTQYLVGEPVTFTSDN-KTLLEYVNELAD-DDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFP 161 (503) T ss_pred eecchHHHHHHHHHhhhhcCCeeeccCc-HHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEEc Confidence 8899999999999999999999999854 556788888876 6899999999999999999999999975 789999999 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCc Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 230 (508) |.+++|++.+... .+++++.+++......++.++++|+|+.. .|.+..... +...++...+ .......+.. T Consensus 162 p~~~~~i~d~~~~-~~~~~~ir~~~~~~~~~~~~~~~evy~~~-----~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ 232 (503) T protein:vir:59 162 AEEMIVVYKDNTR-RDILFALRYYSYKGIMGEETQKAELYTDT-----HVYYYEKID-GVYQMDYSYG--ENNPRPHMTK 232 (503) T ss_pred cceeEEEEeCCCC-CceEEEEEEEEEecCCCceEEEEEEEeCC-----cEEEEEEcC-Cccccccccc--ccccccceee Confidence 9999999554322 22333333333334455678889998733 232212221 1111111111 1111112222 Q ss_pred ceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCC Q lcl|Aclame:pro 231 QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFD 310 (508) Q Consensus 231 ~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~ 310 (508) ....++++++|+++|++ ++.|.|+|+++++|||+||.++|+++++++.....+++. .+.+++....+. T Consensus 233 ~~~~~~~~~vPiv~~~n---------n~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~---~g~~~~~~~~~~ 300 (503) T protein:vir:59 233 GGQAIGWGRVPIIPFKN---------NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVL---KNYDGENPKEFT 300 (503) T ss_pred cceeccCCccceEEecC---------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEe---ecCCccccchhh Confidence 22345566666665542 345899999999999999999999999998877777773 333443333333 Q ss_pred cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 311 TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 311 ~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) .+...+..+..+++ .+++.++++++.+++...++.+.+.|...++.+.-.+ ...+|..||++++++.+.+.+++..+ T Consensus 301 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~~~~~~Sg~Ai~~~~~~l~~k~~~~ 377 (503) T protein:vir:59 301 ANLRYHSVIKVSGD--GGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSP-ETIGGGATGPALENLYALLDLKANMA 377 (503) T ss_pred hhhhcccceeccCC--CcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCc-ccccccccHHHHHHHHHHHHHHHHHH Confidence 33333333443332 3478889999999999999999988877665443222 22346779999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN 470 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~ 470 (508) ++.|+.+|+++++.|+.+...... .......+|+|.|++++|.|..+.++.+++++++|+||.+|++..+ T Consensus 378 ~~~~~~~l~~~~~~i~~~~~~~~~----------~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l 447 (503) T protein:vir:59 378 ERKIRAGLRLFFWFFAEYLRNTGK----------GDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARN 447 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----------cccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhC Confidence 999999999999999988654221 1112234689999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCC-Ccccc-----------------cCCCCCCC Q lcl|Aclame:pro 471 YGMTDEQAAEELAKIQSEAPTDTFE-GGRSA-----------------ILNGGDGE 508 (508) Q Consensus 471 ~~~~deea~~e~~ri~~E~~~~~~~-~~~~~-----------------~~~~~~g~ 508 (508) |++++ +++|++||++|+...... ....+ ...++.|+ T Consensus 448 ~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 501 (503) T protein:vir:59 448 PFVQD--PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQ 501 (503) T ss_pred CCCCC--HHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCC Confidence 99966 678899998776321110 00001 01111111 No 11 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=1.9e-60 Score=348.05 Aligned_cols=450 Identities=17% Similarity=0.180 Sum_probs=308.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC----------CCcccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS----------DGIKKKRL 70 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~----------~~~~~~~~ 70 (508) |- ++.|+.++.+.. ..-.+.+.++...++||.|+|+.+..... ...++..+ T Consensus 1 ~~-~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 61 (470) T protein:vir:10 1 ME-LDALKKLIQNTS------------------TSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADN 61 (470) T ss_pred Cc-hHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCc Confidence 11 122333322111 11235678899999999999986653221 11224456 Q ss_pred ccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWV 149 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v 149 (508) |+++|||+.||++.|+||||+||+++++++ .+++.|++++++ +|...+.++++.|+.+|.+|+++|+|. |++++.++ T Consensus 62 ki~~n~~k~Iv~~~~~yl~G~p~~~~~~d~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~ 139 (470) T protein:vir:10 62 RIPSNFYQLLVDQEAGYVASVFPDIDVGKD-ADNKKIIDVLGD-DRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGII 139 (470) T ss_pred ccccchHHHHHHhhhhheeccceeeecCch-HHHHHHHHHHhh-hHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEE Confidence 899999999999999999999999998664 456889999985 689999999999999999999999985 78999999 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcccc--Ccccccccccc-cc Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIV--GNQVPLSTLPV-YK 226 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~l--G~~v~l~~~~~-~~ 226 (508) +|.++||++.++....-.++++.+...+..+.++++++|+|+ ++ .+.+..+.+...... ....+...... .. T Consensus 140 ~p~~~~~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (470) T protein:vir:10 140 QPDQITPIYATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWT--DK---EAQFFRTNATDSTVIEPYNIITSYDLSAGYE 214 (470) T ss_pred cccceEEEEcCCCCCceEEEEEEEEeeecCCceEEEEEEEEc--CC---cEEEEEeecCcceeccccccccccccccccc Confidence 999999995554333334444445445555667788889876 22 222222222111110 01111101000 00 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) ........+++++.|+++|+ || +.|+|+|.++++|||+||.++|++++.++.....+++ +.+.+++.. T Consensus 215 ~~~~~~~~~~~g~vPvv~~~----nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv---l~g~~~~~~ 282 (470) T protein:vir:10 215 TGQSNTLKHNFGRVPFIEFS----KN-----KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILV---LTNYGGADL 282 (470) T ss_pred cccccccccCCCeeeEEEee----cC-----CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccee---eecCCcccc Confidence 11112223445555555443 33 3599999999999999999999999999855555555 233333333 Q ss_pred ccCCcccceEeeecCC---CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 307 PTFDTEQNVYVGVLSD---DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMT 383 (508) Q Consensus 307 ~~~~~~~~~~~~~~~~---~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l 383 (508) ..+..+...+.++... ++.+++++.++++++.+++...++.+.+.|...++.+. +++.+.|..||.+++++++.+ T Consensus 283 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~--~~~~~~gn~Sg~Alk~~~~~l 360 (470) T protein:vir:10 283 HQFMNDLRKYKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGID--PANFESSNASGVAIKMLYSHL 360 (470) T ss_pred chhhhhhhhcCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCC--CCccccccchHHHHHHHHHHH Confidence 3333333333333322 23456799999999999999999999999988776554 344555788999999999999 Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 384 YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSK 463 (508) Q Consensus 384 ~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~ 463 (508) .++++.+++.|+++|+++++.|+.+.+.. ..+...|+|+|++++|.|..+.++++.++ +|+||. T Consensus 361 ~~k~~~~~~~~~~~l~~~~~~i~~~l~~~--------------~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~ 424 (470) T protein:vir:10 361 ELKAAKTQTYFEHAINELVRAIMRYLNFS--------------DADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSK 424 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------CcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcH Confidence 99999999999999999999998875421 11234689999999999999999888776 699999 Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCC---cccccCCCCCCC Q lcl|Aclame:pro 464 QTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEG---GRSAILNGGDGE 508 (508) Q Consensus 464 et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~---~~~~~~~~~~g~ 508 (508) +|++..+|+++| +++|++||++|+.+..+.. +...+.+..|++ T Consensus 425 et~l~~~p~v~D--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 425 EAVAKANPIVDD--WQQELKDLAKDKEENDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC Confidence 999999999876 7789999998876543322 222222222222 No 12 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=2.4e-58 Score=336.51 Aligned_cols=463 Identities=16% Similarity=0.141 Sum_probs=305.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC--------Ccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD--------GIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~--------~~~~~~~~~ 72 (508) |==+-=+..-+-.....++....+.+.+.+ .++..++.+++.+.+||.|+|+.+...... ...+.++|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki 77 (479) T protein:vir:79 1 MLNIYISETDLIKVQLKKESTINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) T ss_pred CCCceecccceEeeccccCChhHHHHHHHH---HHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Confidence 000000000000000111111122221111 113346778999999999999865432211 112344578 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcC Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRA 151 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a 151 (508) ++|||+.||++.|+|+|++|+++++++ +..++.|+.+++ |+|...+.++++.++++|.+|+++|+|. |++++.+++| T Consensus 78 ~~~~~~~Ivd~~~~~l~g~p~~~~~~~-~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p 155 (479) T protein:vir:79 78 INNYHKLLVDQKVGYSVGNPIVFNADD-DNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPA 155 (479) T ss_pred ecchHHHHHHHHHhhhhcCCceeccCC-HHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcc Confidence 999999999999999999999999855 446677777765 7899999999999999999999999985 7899999999 Q ss_pred CeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCc- Q lcl|Aclame:pro 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP- 230 (508) Q Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~- 230 (508) .+++|++.+.....-.++++.|...+ ..++...++|+|+.. .|.+..+.+.. ....+............. T Consensus 156 ~~~~~v~d~~~~~~~~~~ir~y~~~~-~~~~~~~~~e~y~~~-----~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (479) T protein:vir:79 156 EEAIPIWDSKRQRELVAFIRFYYIED-IDGNKIKRVEYYTEN-----DITYFIERGNS---FIQEFLYDEYGKMTDIQEG 226 (479) T ss_pred ceeEEEEeCCCCCceEEEEEEEEEee-cCCceEEEEEEEeCC-----cEEEEEecCCc---ccccccccccccccccccc Confidence 99999954433322233333333322 334456678888632 23322222211 111111111111111111 Q ss_pred ----ceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 231 ----QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 231 ----~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) ....+++++.|+++|+ | ++.|.|+|+++++|||+||.++|++++.++.....+++ +.+.++... T Consensus 227 ~~~~~~~~~~~~~vPvv~~~----n-----n~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v---~~g~~~~~~ 294 (479) T protein:vir:79 227 HFRINNKEQGWGKVPFIPFK----N-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV---LKEYPGTSL 294 (479) T ss_pred cccccccccCCCcccEEEec----C-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceee---eecCCcccc Confidence 1112344455555443 3 34699999999999999999999999999876666666 233333333 Q ss_pred ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 307 PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ..+..+......+..+++ ..++.++++++.+++...++.+.+.|...++... +++...|..||++++++++.+.++ T Consensus 295 ~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~--~~~~~~gn~Sg~Ai~~~~~~l~~k 370 (479) T protein:vir:79 295 QEFIDNIRYYKSIKVDGG--GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVN--PESQNTGDKSGVALKFLYSLLDLK 370 (479) T ss_pred ccchhhhhhccceecCCC--CcceEEeccCCHHHHHHHHHHHHHHHHHHhCccc--cccccccchhHHHHHHHHHHHHHH Confidence 333334444444444332 3588999999999999999999999988876543 445555778999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +..+++.|+.+|+++++.++.+.+..+ .......+++|.|++++|.|..+.++++.++ +|+||.+|+ T Consensus 371 ~~~~~~~~~~~l~~~~~li~~~~~~~~-----------~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~ 437 (479) T protein:vir:79 371 CSKTEKKFKKAIRELLWFVCEYLKISG-----------NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETI 437 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-----------CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHH Confidence 999999999999999999998865432 2233456789999999999999999988876 599999999 Q ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 467 LQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 467 l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..+|+++| +++|++||++|+.+............++..| T Consensus 438 l~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 477 (479) T protein:vir:79 438 VSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhccCcccCCCcC Confidence 999999976 7788999999986544433333333333333 No 13 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=1.2e-57 Score=332.71 Aligned_cols=463 Identities=11% Similarity=0.044 Sum_probs=303.9 Q ss_pred CChHH----------HHHHHHHHHHHhhhhhh-----------hhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC Q lcl|Aclame:pro 1 MGLIQ----------RIKDLFWKGAAATGVTG-----------SLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY 59 (508) Q Consensus 1 m~~~~----------~ik~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~ 59 (508) |==+. -+..-|++..+..+.-. .|.++..+ ....+..+++++.+||.|+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~----~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEH----HMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHH----HHHhhHHHHHHHHHHhcccCccccc Confidence 11011 11111222222211110 01111110 0123456789999999999997754 Q ss_pred ccC-CCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 60 QAS-DGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 60 ~~~-~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ... ....+.++|+++|+|+.||+..|+||||+||++++++ +..++.|++++++|+|...+.++++.|+++|.+|.++| T Consensus 77 ~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~-~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy 155 (511) T protein:vir:96 77 LTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMI 155 (511) T ss_pred cCcCcccccCcceeecchHHHHHHHHHhhhccCCceeecCc-hHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEE Confidence 432 2333456788999999999999999999999999865 45678999999999999999999999999999999999 Q ss_pred EeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEe--ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 139 IDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRT--ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 139 ~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~--~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) +|+ |++++.+++|.+++|++.+.......++++.+... +....+...++|+|+ +++.|+ |...+.. T Consensus 156 ~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt--~~~i~~-----~~~~~~~---- 224 (511) T protein:vir:96 156 RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHGVYR-----YLTSRTN---- 224 (511) T ss_pred eCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEe--CCcEEE-----EEecCCC---- Confidence 985 78999999999999996554443344444444332 222333445566655 222221 2221111 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQ 295 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~ 295 (508) ..++. ........+++..+|+++|+ | ++.|+|+|++++++||+||.++|++++.++.....++|. T Consensus 225 ~~~~~------~~~~~~~~~~~~~vPvv~~~----n-----n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~ 289 (511) T protein:vir:96 225 GLKLT------PRENGFESHSFERMPITEFS----N-----NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLI 289 (511) T ss_pred ccccc------ccccccccccCCceeeEEec----C-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeee Confidence 01000 00111122445555666554 3 235899999999999999999999999998777777775 Q ss_pred hHHhcCCCCCCccCCcccc-------eEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc Q lcl|Aclame:pro 296 PGMLRFDDEHKPTFDTEQN-------VYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND 368 (508) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 368 (508) ..+...+.........+.. ...+...+...+..++.+++++++++....++.+.+.|...++.+.-+++. .+ T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~-~~ 368 (511) T protein:vir:96 290 KGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDN-FS 368 (511) T ss_pred ecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cc Confidence 5443333222222211111 111112223344568999999999999999999999998888765543322 23 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+....+. .........++++|++++|.|..++ T Consensus 369 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~---------~~~~~d~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:96 369 GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS---------IDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------cccccccccceEEeCCCCCCCHHHH Confidence 6679999999999999999999999999999999999987654221 1111223468999999999999999 Q ss_pred HHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC---CcccccCCCCCCC Q lcl|Aclame:pro 449 LEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE---GGRSAILNGGDGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~---~~~~~~~~~~~g~ 508 (508) ++++.++ +|+||.+|++..+|+++| +++|++||++|+...... .......+..+|+ T Consensus 440 ~~~~~kl--~G~iS~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:96 440 LKAYIDS--GGKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred HHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 9988776 699999999999999976 778999999886432110 0111111111111 No 14 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=3.9e-57 Score=329.85 Aligned_cols=463 Identities=11% Similarity=0.044 Sum_probs=300.3 Q ss_pred CC----------hHHHHHHHHHHHHHhhhhhh-----------hhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC Q lcl|Aclame:pro 1 MG----------LIQRIKDLFWKGAAATGVTG-----------SLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY 59 (508) Q Consensus 1 m~----------~~~~ik~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~ 59 (508) |= +-.-+..-|.+..+..+.-. .|.++..+ ....+..+++++.+||.|+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~----~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:99 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEH----HMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHH----HHHhhHHHHHHHHHHhcccCccccc Confidence 10 00111112222222211110 01111110 0123456788999999999997654 Q ss_pred ccC-CCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 60 QAS-DGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 60 ~~~-~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ... ....+.++|+++|||+.||+..|+|||++||++++++ +.+++.|++++++|+|...+.++++.|+++|.+|+++| T Consensus 77 ~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy 155 (511) T protein:vir:99 77 LTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMI 155 (511) T ss_pred cCcccccccCcceeecchHHHHHHHHHhhhcccCceeecCc-hHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEE Confidence 432 2333456788999999999999999999999999854 55788999999999999999999999999999999999 Q ss_pred Ee-CCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEe--ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 139 ID-GNHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRT--ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 139 ~d-~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~--~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) +| +|++++.+++|.++||++.++......++++.+... +....+...++|+|+ +++.|+ |...... T Consensus 156 ~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt--~~~i~~-----~~~~~~~---- 224 (511) T protein:vir:99 156 RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHGVYR-----YLTSRTN---- 224 (511) T ss_pred eCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEe--CCcEEE-----EEecCCc---- Confidence 97 478999999999999995544333333444433322 222334445566665 222222 2211111 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQ 295 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~ 295 (508) ...+. .-......++++.+|+++|+ | ++.|.|+|+++++|||+||.++|++++.++.....+++. T Consensus 225 ~~~~~------~~~~~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~ 289 (511) T protein:vir:99 225 GLKLT------PRENGFESHSFERMPITEFS----N-----NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLI 289 (511) T ss_pred ccccc------ccccccccCCCCccceEEec----C-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhh Confidence 00000 00111122455555565554 3 246899999999999999999999999998666666663 Q ss_pred hHHhcCCCCCCccCCccc-------ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc Q lcl|Aclame:pro 296 PGMLRFDDEHKPTFDTEQ-------NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND 368 (508) Q Consensus 296 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 368 (508) ..+...+..+......+. ....+...+..++..++.++++++.+++...++.+.+.|...++.+.-+++ ..+ T Consensus 290 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~-~~~ 368 (511) T protein:vir:99 290 KGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFS 368 (511) T ss_pred ccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-ccc Confidence 332222222222221111 111112223344456889999999999999999999999887776544332 223 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+....+.. ........|+|.|++++|.|..+. T Consensus 369 gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~---------~~~~~~~~i~i~f~~~~p~n~~e~ 439 (511) T protein:vir:99 369 GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI---------DVSKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------ccccccccceEEeCCCCCcCHHHH Confidence 67799999999999999999999999999999999999886543211 111223358899999999999999 Q ss_pred HHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCC------CCcccccCCCC----------CCC Q lcl|Aclame:pro 449 LEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF------EGGRSAILNGG----------DGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~------~~~~~~~~~~~----------~g~ 508 (508) ++.+.++ .|+||.+|++..+|+++| +++|++||++|+.+... .....+..++. ++| T Consensus 440 ~~~~~kl--~GiiS~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 440 LKAYIDS--GGKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred HHHHHHH--hccCCHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcCcccccC Confidence 9988877 499999999999999976 77889999988643211 00000000010 011 No 15 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=1.7e-58 Score=337.24 Aligned_cols=449 Identities=15% Similarity=0.110 Sum_probs=293.2 Q ss_pred hHHH----HHHHHHHHHHhhh-----hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC------Cccc Q lcl|Aclame:pro 3 LIQR----IKDLFWKGAAATG-----VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD------GIKK 67 (508) Q Consensus 3 ~~~~----ik~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~------~~~~ 67 (508) |++. =|.||...+..+. ....|.+. |....++..++.++++||.|+|+.++.+... ...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~ 75 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEEMILRL-----ITKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFK 75 (468) T ss_pred CccccCCcCceeehheeecccccccCcHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Confidence 2111 0111111110000 00111111 1222346678999999999999866543221 1223 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i 146 (508) .++|+++|||+.||++.|+||||+|+++++++ +.+++.|+++++ |+|...+.++++.|+++|.+|+++|+| +|.+++ T Consensus 76 ~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i 153 (468) T protein:vir:96 76 PDWRMYTNYHQNLVDQKVAYAVANPVTYGTED-EKSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKT 153 (468) T ss_pred cccccccchHHHHHHHHHhhhccCCceeccCC-hHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEE Confidence 45688999999999999999999999999865 556889999997 689999999999999999999999998 478999 Q ss_pred EEEcCCeEEEEEEcCCCeE-EEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDIS-EAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~-~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) .+++|.+++|++ +++... -++|++.+. .++. +++|.|+ + .+|.+..+....... ...-.......+ T Consensus 154 ~~~~p~~~~~v~-~~~~~~~~~~~ir~~~-~~~~-----~~~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 220 (468) T protein:vir:96 154 FRVPAEQAIPIW-TNKERDELKAFIRLYE-LDGG-----ERVEYWT--A---NDVTFYELKDGQLIP-DYYQGEEHVQAH 220 (468) T ss_pred EEEcccceEEEE-cCCCCCceEEEEEEEE-ecCc-----eEEEEEe--C---CeEEEEEEcCCceee-cccccccccccc Confidence 999999999995 443322 233443333 2221 1245544 1 122221111111000 000000000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .......+++++.|+++|++ ++.|+|+|+++++|||+||.++|++++.++.....+++. .+.+++. T Consensus 221 --~~~~~~~~~~~~iPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~---~g~~~~~ 286 (468) T protein:vir:96 221 --YYVGNKSMSWNRVPFIPFKN---------NPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVL---KGYEGED 286 (468) T ss_pred --eeeccccccCCcccEEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeee---ecCCccc Confidence 00111123455555555543 346999999999999999999999999997544445552 2233333 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+..+...+..+..+++++.+++.++++++.+++...++.+.+.|...++.+.-++ ...+|..||.+++++.+.+.. T Consensus 287 ~~~~~~~~~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~~~n~Sg~Alk~~~~~l~~ 365 (468) T protein:vir:96 287 LEEFMYNLKYYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQ-DKFGNSPSGIALKFMYSNLDL 365 (468) T ss_pred cchhhhhhhcCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCcccccc-cccccchHHHHHHHHHHHHHH Confidence 3333333333444444444455689999999999999999999999988887543222 223467899999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et 465 (508) ++..++..|+.+|+++++.|+.+... .....+|+|+|++++|.|..+.++++ +.+|+||.+| T Consensus 366 k~~~k~~~~~~~l~~~~~li~~~~g~---------------~~d~~~i~i~f~~~~p~d~~e~a~~~---~~~g~iS~et 427 (468) T protein:vir:96 366 KANKLKNKTLTALQELLQYIIDFYKL---------------SIKVQDVEITFNFNVMVNELEQSQIG---VNSQYLSKET 427 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEecCCCCcCHHHHHHHH---HhcCCCchHH Confidence 99999999999999999998876321 12345789999999999988777654 4469999999 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ++..+|+++| +++|++||++|+.+...... +..++++-| T Consensus 428 ~i~~l~~v~D--~~~E~~ri~~E~~~~~~~~~--~~~~~~~~~ 466 (468) T protein:vir:96 428 VVTNHPWVDD--PVAEMERIDQEELALPSIEE--GLNGKENNE 466 (468) T ss_pred HHHhCCCCCC--HHHHHHHHHHHHHHHHHHhh--ccCCCCCCC Confidence 9999999976 78999999999865433322 222222223 No 16 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=2.7e-58 Score=336.20 Aligned_cols=447 Identities=16% Similarity=0.132 Sum_probs=296.1 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhcc---------ccccCCHHHHHHHHHHHHHhcCCCccccCccC------CCccc Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDD---------PRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS------DGIKK 67 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~------~~~~~ 67 (508) ||+.++.=..|..+. +-++.+.+. ..|..-.++..++..+++||.|+|+.+..... ....+ T Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:97 1 MFNIIRMPWDKPYGE----EVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred CcccccccCCCchhh----HHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccccccc Confidence 444333222221110 111111110 11111234678899999999999986542211 11233 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) .+.|+++|||+.||++.|+|||++|+++++++ +..++.|+.+++ |+|...+.++++.|+++|.+|+++|+|+ |++++ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i 154 (474) T protein:vir:97 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCED-ENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMKL 154 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCc-HHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEE Confidence 45688999999999999999999999999865 446788999886 6899999999999999999999999975 68999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|.+++|++.++.....++|++.+...+ . .++|.|+ +... .. |...+.. .... ....-. T Consensus 155 ~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~---~---~~~~~yt--~~~~--~~---y~~~~~~-~~~~----~~~~~~ 216 (474) T protein:vir:97 155 FRVPAEQAIPIWVDKEREELKSFIRYYKFNN---E---EKVEFWT--DTTV--TY---YVLENGG-LIPD----YYYGAN 216 (474) T ss_pred EEEcccceEEEEcCCCCCceEEEEEEEEecC---e---EEEEEEe--CCeE--EE---EEEcCCc-cccc----cccCcC Confidence 9999999999954443344445555543321 1 1234443 1111 11 1111111 0000 000001 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) ........++++++|+++|++ ++.|+|+|+++++|||+||.++|++++.++.....+++ +.+.+++.. T Consensus 217 ~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv---~~g~~~~~~ 284 (474) T protein:vir:97 217 HVQSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYI---LKGYEGEDL 284 (474) T ss_pred cccccccccCCCccceEEecC---------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCcccc Confidence 122233345667777766643 34699999999999999999999999999765555665 334444443 Q ss_pred ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 307 PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ..+..+...+..+..+++ .+++.++++++.+++...++.+.+.|...++.+.-++. ..+|..||.+++++.+.+.++ T Consensus 285 ~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k 361 (474) T protein:vir:97 285 EEFMRGLKYYKAINVDGD--GGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTD-KFGSAPSGIALKFLYGNLDLK 361 (474) T ss_pred hhhhhhhhccceeeccCC--CceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcc-ccccccHHHHHHHHHHHHHHH Confidence 444455555555555433 35889999999999999999999999888765432221 223667999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +..+++.|+.+|+++++.|+.+... ......|+|+|++++|.|..+.++.+. .+|+||.+|+ T Consensus 362 ~~~k~~~~~~~l~~~~~li~~~~~~---------------~~d~~~i~v~f~~~~p~~~~e~a~~~~---~~g~iS~et~ 423 (474) T protein:vir:97 362 ANKLKNKATVAIQELISFIIDFNNL---------------KTDVKDIEISFNFNRMMNDAEQSQIIA---QSQYLSRETL 423 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEeccCcccCHHHHHHHHH---HcCCCCHHHH Confidence 9999999999999999998876421 112346889999999999777766554 4599999999 Q ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccc---cCCC----CCCC Q lcl|Aclame:pro 467 LQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSA---ILNG----GDGE 508 (508) Q Consensus 467 l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~---~~~~----~~g~ 508 (508) +..+|+++| +++|++||++|+.+.....+..+ ..++ .+++ T Consensus 424 l~~l~~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474) T protein:vir:97 424 VKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNN 470 (474) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcc Confidence 999999977 67889999988743221111111 1100 1111 No 17 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=2.7e-58 Score=336.20 Aligned_cols=447 Identities=16% Similarity=0.132 Sum_probs=296.1 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhcc---------ccccCCHHHHHHHHHHHHHhcCCCccccCccC------CCccc Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDD---------PRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS------DGIKK 67 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~------~~~~~ 67 (508) ||+.++.=..|..+. +-++.+.+. ..|..-.++..++..+++||.|+|+.+..... ....+ T Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:94 1 MFNIIRMPWDKPYGE----EVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred CcccccccCCCchhh----HHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccccccc Confidence 444333222221110 111111110 11111234678899999999999986542211 11233 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) .+.|+++|||+.||++.|+|||++|+++++++ +..++.|+.+++ |+|...+.++++.|+++|.+|+++|+|+ |++++ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i 154 (474) T protein:vir:94 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCED-ENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMKL 154 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCc-HHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEE Confidence 45688999999999999999999999999865 446788999886 6899999999999999999999999975 68999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|.+++|++.++.....++|++.+...+ . .++|.|+ +... .. |...+.. .... ....-. T Consensus 155 ~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~---~---~~~~~yt--~~~~--~~---y~~~~~~-~~~~----~~~~~~ 216 (474) T protein:vir:94 155 FRVPAEQAIPIWVDKEREELKSFIRYYKFNN---E---EKVEFWT--DTTV--TY---YVLENGG-LIPD----YYYGAN 216 (474) T ss_pred EEEcccceEEEEcCCCCCceEEEEEEEEecC---e---EEEEEEe--CCeE--EE---EEEcCCc-cccc----cccCcC Confidence 9999999999954443344445555543321 1 1234443 1111 11 1111111 0000 000001 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) ........++++++|+++|++ ++.|+|+|+++++|||+||.++|++++.++.....+++ +.+.+++.. T Consensus 217 ~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv---~~g~~~~~~ 284 (474) T protein:vir:94 217 HVQSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYI---LKGYEGEDL 284 (474) T ss_pred cccccccccCCCccceEEecC---------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCcccc Confidence 122233345667777766643 34699999999999999999999999999765555665 334444443 Q ss_pred ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 307 PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ..+..+...+..+..+++ .+++.++++++.+++...++.+.+.|...++.+.-++. ..+|..||.+++++.+.+.++ T Consensus 285 ~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k 361 (474) T protein:vir:94 285 EEFMRGLKYYKAINVDGD--GGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTD-KFGSAPSGIALKFLYGNLDLK 361 (474) T ss_pred hhhhhhhhccceeeccCC--CceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcc-ccccccHHHHHHHHHHHHHHH Confidence 444455555555555433 35889999999999999999999999888765432221 223667999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +..+++.|+.+|+++++.|+.+... ......|+|+|++++|.|..+.++.+. .+|+||.+|+ T Consensus 362 ~~~k~~~~~~~l~~~~~li~~~~~~---------------~~d~~~i~v~f~~~~p~~~~e~a~~~~---~~g~iS~et~ 423 (474) T protein:vir:94 362 ANKLKNKATVAIQELISFIIDFNNL---------------KTDVKDIEISFNFNRMMNDAEQSQIIA---QSQYLSRETL 423 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEeccCcccCHHHHHHHHH---HcCCCCHHHH Confidence 9999999999999999998876421 112346889999999999777766554 4599999999 Q ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccc---cCCC----CCCC Q lcl|Aclame:pro 467 LQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSA---ILNG----GDGE 508 (508) Q Consensus 467 l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~---~~~~----~~g~ 508 (508) +..+|+++| +++|++||++|+.+.....+..+ ..++ .+++ T Consensus 424 l~~l~~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474) T protein:vir:94 424 VKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNN 470 (474) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcc Confidence 999999977 67889999988743221111111 1100 1111 No 18 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=1.1e-56 Score=327.37 Aligned_cols=455 Identities=12% Similarity=0.056 Sum_probs=312.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcccc----c-cCCHHHHHHHHHHHHHhcCCCccccCcc---CCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPR----I-SIDPDEYVRIQTDLDYYSDKLQYIHYQA---SDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~----i-~~~~~~~~~i~~~~~~Y~g~~~~~~~~~---~~~~~~~~~~~ 72 (508) |+.|+.+.+.+. +..+....+...++... | ....+++.+++.+.+||.|+++.+..+. .....+..+|+ T Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki 82 (481) T protein:vir:10 6 INNINTKFSPLA---NDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRA 82 (481) T ss_pred eehhchhccccc---CceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCcccccccccccccee Confidence 888887666543 22222222222211100 1 1124677889999999999987543322 12233345678 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcC Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRA 151 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a 151 (508) ++|+|+.||++.|+|+|++|+++++++ +..++.|++++++|+|...+.++++.++.+|.+|+++|.|+ |++++.+++| T Consensus 83 ~~n~~~~ivd~~~~~l~g~~~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~~i~~~~p 161 (481) T protein:vir:10 83 VHNYAKYVSRFIVGYLTGNPITITHQD-NQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRDTFKVLDP 161 (481) T ss_pred ecchHHHHHHHHHhhhccCCceEecCC-hhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeEEEEEEcc Confidence 999999999999999999999999865 45678999999999999999999999999999999999974 7899999999 Q ss_pred CeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) .+++|++.+.....-.++++.+. .....++.++++|+|+ ++ .|.+....+.. +..+.. T Consensus 162 ~~~~~v~d~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~y~--~~---~i~~~~~~~~~---------~~~~~~------- 219 (481) T protein:vir:10 162 KSTFVVYDQTLDKKVVAGVRYFE-KQDKDKVPVQHVEVYT--TD---KIYYIEIKGGT---------YHRVEE------- 219 (481) T ss_pred cceEEEEcCCCCCceEEEEEEEE-EeeCCCceEEEEEEEe--cC---eEEEEEecCCc---------eeeccc------- Confidence 99999954443322233333333 3333445566778775 22 22221111111 000100 Q ss_pred eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCc Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDT 311 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~ 311 (508) .-+++++.|+++|+ | ++.|.|+++++++|||+||.++|++.+.++.....+++...+...+++....+.. T Consensus 220 -~~~~~g~vPvv~~~----n-----~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 289 (481) T protein:vir:10 220 -VEHYYNDVPIIEYL----N-----DQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLDSEDAKAFRD 289 (481) T ss_pred -ccccCCceeEEEee----c-----CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCCccchhhhhh Confidence 01234444454443 3 2458999999999999999999999999975544544433344445554444444 Q ss_pred ccceEeeecC---CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 312 EQNVYVGVLS---DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRS 388 (508) Q Consensus 312 ~~~~~~~~~~---~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~ 388 (508) +...+..... +.++++.++.++++++.+++...++.+.+.|...++.+..+++. .++..||.++.+..+.+..++. T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~ 368 (481) T protein:vir:10 290 ANMIHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQ-FSGVQSGESMKYKLFGLEQVRA 368 (481) T ss_pred ccceeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cccccHHHHHHHHHHHHHHHHH Confidence 4333333221 23344568899999999999999999999998888776555543 3466799999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~ 468 (508) .+++.|+.+|+++++.++.+.+..+ .......++++.|+++++.|..+.++.++++ +|+||.+|++. T Consensus 369 ~~~~~~~~~l~~~~~li~~~~~~~~-----------~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl--~g~is~et~~~ 435 (481) T protein:vir:10 369 IKERLFKKGLMKRYKLLLNNVNLTG-----------LKQHNYAELTITFTPNLPKSMMESINAFNAL--SGGVSESTRLS 435 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-----------CCccccceeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHH Confidence 9999999999999999998865432 2223445799999999999999999988877 48999999999 Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCCC---------CcccccCCCCCC Q lcl|Aclame:pro 469 RNYGMTDEQAAEELAKIQSEAPTDTFE---------GGRSAILNGGDG 507 (508) Q Consensus 469 ~~~~~~deea~~e~~ri~~E~~~~~~~---------~~~~~~~~~~~g 507 (508) .+|++++ +++|++||++|+.+..+. ++..+..+++.| T Consensus 436 ~l~~i~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~dd~~g 481 (481) T protein:vir:10 436 LLDFIDN--PKEELEKMQEEEAQREKQADKRGYGEAFENHLNVDDSNG 481 (481) T ss_pred hCCCCCC--HHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCCCCCC Confidence 9999876 678899988876432111 111111122222 No 19 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=1.2e-57 Score=332.57 Aligned_cols=446 Identities=16% Similarity=0.122 Sum_probs=292.3 Q ss_pred hHHHHHHHHHHHH-----Hhhhh-----hhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC---C---Ccc Q lcl|Aclame:pro 3 LIQRIKDLFWKGA-----AATGV-----TGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS---D---GIK 66 (508) Q Consensus 3 ~~~~ik~~~~~~~-----~~~~~-----~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~---~~~ 66 (508) |+..+++=..+-. -.+.. .+.|++. |.--..+..++..+++||.|+|+.++.... . ..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~ 75 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRL-----IDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYD 75 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHH-----HHHHHHHHHHHHHHHHHhcccCchhccccccccccccccc Confidence 3332221111000 00000 0111111 111234677899999999999986542211 1 122 Q ss_pred ccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeE Q lcl|Aclame:pro 67 KKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIK 145 (508) Q Consensus 67 ~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~ 145 (508) +...++++|||+.||++.|+|||++|+++++++ +.+++.|+.+++ |+|...+.++++.++++|.+|+++|+|+ |+++ T Consensus 76 ~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~ 153 (474) T protein:vir:95 76 KPDWRITTNFHQNLVDQKVSYVASKPVTYSCED-ESVLKIIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMK 153 (474) T ss_pred cccceeccchHHHHHHHHHhhhccCCceeccCc-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCcEEEEEEecCCCceE Confidence 345688999999999999999999999999865 456788999987 6799999999999999999999999975 7899 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +.+++|.+++|++.+......+++++.+...+.. +++.|+.. .+.+ |...... ......... T Consensus 154 i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~------~~~~y~~~-----~~~~--~~~~~~~-----~~~~~~~~~ 215 (474) T protein:vir:95 154 LFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEE------KVEFWTDT-----TVTY--YVLENGG-----LIPDYYYGA 215 (474) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEEEEEcCee------EEEEEeCC-----eEEE--EEEcCCc-----cccccccCc Confidence 9999999999995443333344444444332211 23443311 1111 1111110 000000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .........++++++|+++|+ | ++.|+|+|+++++|||+||.++|+++++++.....+++ +.+.+++. T Consensus 216 ~~~~~~~~~~~~g~iPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv---~~g~~~~~ 283 (474) T protein:vir:95 216 NHIQSHFSNGNWGRVPFIAFK----N-----NPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYI---LKGYEGQD 283 (474) T ss_pred ccccccccccCCCccceEeec----C-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCccc Confidence 111222233455566666554 3 35699999999999999999999999999866666666 23334443 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+..+...+..+..+++ .+++.++++++++++...++.+.+.|...++.+.-++ ...++..||.+++++++.+.. T Consensus 284 ~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~~~~n~Sg~Alk~~~~~l~~ 360 (474) T protein:vir:95 284 LEEFMRGLKYYKAINVDGD--GGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQT-DKFGSAPSGIALKFLYGNLDL 360 (474) T ss_pred chhhhhhhhccceeeccCC--CceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc-ccccccchHHHHHHHHHHHHH Confidence 3444455555555555433 3588899999999999999999999988876553222 123466799999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et 465 (508) ++..+++.|+.+|+++++.|+.+... .....+|+|+|++++|.|..+.++.+. .+|+||.+| T Consensus 361 k~~~k~~~~~~~l~~~~~li~~~~g~---------------~~d~~~i~v~f~~~~p~d~~e~a~~~~---~~g~iS~et 422 (474) T protein:vir:95 361 KANKLKNKATVAIQELIGFIIDFNNL---------------KMDVKDIEISFNFNRMMNDAEQSQIIA---QSQYLSRET 422 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEeccCCCcCHHHHHHHHH---hcCCCchHH Confidence 99999999999999999998876321 123457899999999999777776554 469999999 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccc---cC----CCCCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSA---IL----NGGDGE 508 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~---~~----~~~~g~ 508 (508) ++..+|+++| +++|++||++|+.+......... .. ...++| T Consensus 423 ~i~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~ 470 (474) T protein:vir:95 423 LVKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSND 470 (474) T ss_pred HHHhCCCCCC--HHHHHHHHHHHHHHHHhcccccccccCCCCcCCCCCcc Confidence 9999999977 66889999988643221111111 00 001111 No 20 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=1.5e-56 Score=326.62 Aligned_cols=463 Identities=11% Similarity=0.048 Sum_probs=300.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhh-----------hHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CCcccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGS-----------LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DGIKKK 68 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~ 68 (508) -++-.-+.--|++..+..+.-.+ |.++..+ .-..+..+++++.+||.|+|+.+..... ....+. T Consensus 11 ~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~----~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~ 86 (511) T protein:vir:78 11 TDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEH----HMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMA 86 (511) T ss_pred hhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHH----HHHhhhHHHHHHHHHhhccCccccccCcccccccC Confidence 11111122222222222221111 1111110 0123456788899999999997754432 233345 Q ss_pred ccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEE Q lcl|Aclame:pro 69 RLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIA 147 (508) Q Consensus 69 ~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~ 147 (508) ++|+++|+|+.||+..|+|||++||++++++ +.+++.|++++++|+|...+.++++.|+++|.+|.++|+|+ |++++. T Consensus 87 ~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~ 165 (511) T protein:vir:78 87 DNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLY 165 (511) T ss_pred cceeecchHHHHHHHHhhhhcccCceeecCc-hHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEE Confidence 6788999999999999999999999999855 55678999999999999999999999999999999999975 789999 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEE--eecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQR--TESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~--~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +++|.+++|++.+.......++++.+.. .+....+...++|+|+ ++. |.. |...+.. ..++. . T Consensus 166 ~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt--~~~---i~~--~~~~~~~----~~~~~--~-- 230 (511) T protein:vir:78 166 KSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHG---VYR--YLTNRTN----GLKLT--P-- 230 (511) T ss_pred EEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEe--CCc---EEE--EEecCCC----ccccc--c-- Confidence 9999999999655443333344333332 2223334555677765 222 221 2211111 01100 0 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .......++++.+|+++|+ |+ +.|.|+|+++++|||+||.++|++++.++.....+++...+...+.+. T Consensus 231 --~~~~~~~~~~g~vPvv~~~----n~-----~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:78 231 --RENSFESHSFERMPITEFS----NN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --cccccccCcCcccceEEec----CC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchh Confidence 0111112344444554443 32 458999999999999999999999999986555555532222222211 Q ss_pred Ccc-------CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHH Q lcl|Aclame:pro 306 KPT-------FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVS 378 (508) Q Consensus 306 ~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~ 378 (508) ... .......+.+...+..++..++.++++++++++...++.+.+.|...++.+.-+++. .+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~-~~~n~Sg~Al~~ 378 (511) T protein:vir:78 300 VRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDN-FSGTQSGEAMKY 378 (511) T ss_pred hcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cccccHHHHHHH Confidence 111 111111122222233445568899999999999999999999998888765443322 236679999999 Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 379 NNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAI 458 (508) Q Consensus 379 ~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~ 458 (508) +.+.+..++..+++.|+.+|+++++.|+.+.....-. .......++++.|++++|.|..++++.+.+++ T Consensus 379 ~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~---------~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~-- 447 (511) T protein:vir:78 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI---------DANKDFNTVRYVYNRNLPKSLIEELKAYIDSG-- 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------ccccccccceEEeCCCCCcCHHHHHHHHHHHh-- Confidence 9999999999999999999999999998876532211 11122346889999999999999999888874 Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC-Cccc--ccCCCCCCC Q lcl|Aclame:pro 459 GALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE-GGRS--AILNGGDGE 508 (508) Q Consensus 459 Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~-~~~~--~~~~~~~g~ 508 (508) |+||.+|++..+|+++| +++|++||++|+...... .... +..+..+++ T Consensus 448 G~iS~et~l~~l~~v~d--~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:78 448 GKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 99999999999999976 789999999886432110 0000 111111111 No 21 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=1.5e-56 Score=326.62 Aligned_cols=463 Identities=11% Similarity=0.048 Sum_probs=300.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhh-----------hHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CCcccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGS-----------LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DGIKKK 68 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~ 68 (508) -++-.-+.--|++..+..+.-.+ |.++..+ .-..+..+++++.+||.|+|+.+..... ....+. T Consensus 11 ~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~----~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~ 86 (511) T protein:vir:96 11 TDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEH----HMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMA 86 (511) T ss_pred hhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHH----HHHhhhHHHHHHHHHhhccCccccccCcccccccC Confidence 11111122222222222221111 1111110 0123456788899999999997754432 233345 Q ss_pred ccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEE Q lcl|Aclame:pro 69 RLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIA 147 (508) Q Consensus 69 ~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~ 147 (508) ++|+++|+|+.||+..|+|||++||++++++ +.+++.|++++++|+|...+.++++.|+++|.+|.++|+|+ |++++. T Consensus 87 ~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~ 165 (511) T protein:vir:96 87 DNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLY 165 (511) T ss_pred cceeecchHHHHHHHHhhhhcccCceeecCc-hHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEE Confidence 6788999999999999999999999999855 55678999999999999999999999999999999999975 789999 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEE--eecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQR--TESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~--~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +++|.+++|++.+.......++++.+.. .+....+...++|+|+ ++. |.. |...+.. ..++. . T Consensus 166 ~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt--~~~---i~~--~~~~~~~----~~~~~--~-- 230 (511) T protein:vir:96 166 KSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHG---VYR--YLTNRTN----GLKLT--P-- 230 (511) T ss_pred EEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEe--CCc---EEE--EEecCCC----ccccc--c-- Confidence 9999999999655443333344333332 2223334555677765 222 221 2211111 01100 0 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .......++++.+|+++|+ |+ +.|.|+|+++++|||+||.++|++++.++.....+++...+...+.+. T Consensus 231 --~~~~~~~~~~g~vPvv~~~----n~-----~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:96 231 --RENSFESHSFERMPITEFS----NN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --cccccccCcCcccceEEec----CC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchh Confidence 0111112344444554443 32 458999999999999999999999999986555555532222222211 Q ss_pred Ccc-------CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHH Q lcl|Aclame:pro 306 KPT-------FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVS 378 (508) Q Consensus 306 ~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~ 378 (508) ... .......+.+...+..++..++.++++++++++...++.+.+.|...++.+.-+++. .+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~-~~~n~Sg~Al~~ 378 (511) T protein:vir:96 300 VRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDN-FSGTQSGEAMKY 378 (511) T ss_pred hcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cccccHHHHHHH Confidence 111 111111122222233445568899999999999999999999998888765443322 236679999999 Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 379 NNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAI 458 (508) Q Consensus 379 ~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~ 458 (508) +.+.+..++..+++.|+.+|+++++.|+.+.....-. .......++++.|++++|.|..++++.+.+++ T Consensus 379 ~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~---------~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~-- 447 (511) T protein:vir:96 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI---------DANKDFNTVRYVYNRNLPKSLIEELKAYIDSG-- 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------ccccccccceEEeCCCCCcCHHHHHHHHHHHh-- Confidence 9999999999999999999999999998876532211 11122346889999999999999999888874 Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC-Cccc--ccCCCCCCC Q lcl|Aclame:pro 459 GALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE-GGRS--AILNGGDGE 508 (508) Q Consensus 459 Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~-~~~~--~~~~~~~g~ 508 (508) |+||.+|++..+|+++| +++|++||++|+...... .... +..+..+++ T Consensus 448 G~iS~et~l~~l~~v~d--~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:96 448 GKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 99999999999999976 789999999886432110 0000 111111111 No 22 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=7.9e-57 Score=328.16 Aligned_cols=446 Identities=14% Similarity=0.129 Sum_probs=303.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC--------------CCcc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS--------------DGIK 66 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--------------~~~~ 66 (508) |.+ +.|+..+.+.. .--.++..++...++||.|+|+.+..... .... T Consensus 1 ~~~-e~~~~~i~~~~------------------~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~ 61 (471) T protein:vir:10 1 MEI-EVIKKIISSQM------------------VKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFR 61 (471) T ss_pred CCH-HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccc Confidence 332 22222221111 11124567899999999999986643211 1122 Q ss_pred ccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CCee Q lcl|Aclame:pro 67 KKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID--GNHI 144 (508) Q Consensus 67 ~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~~~ 144 (508) +..+|+++||++.||++.++|+||+|+++++++ +.+++.|+.+++ |+|...+.++++.++.+|.+|+++|+| +|++ T Consensus 62 ~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~~-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~ 139 (471) T protein:vir:10 62 NADNRISHNWHQLLLDQKKAYALTYPPTFDVDD-KKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDNSF 139 (471) T ss_pred cccceeccchhHHHHHhhhhhhcccCceeccCC-hHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCee Confidence 345688999999999999999999999999855 556788999886 689999999999999999999999998 3889 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccC-----ccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVG-----NQVPL 219 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG-----~~v~l 219 (508) ++.+++|.+++|++.+.....-.++++.+...+...++..+++|+|+ +.+.++ |...+..... ...+. T Consensus 140 ~~~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~--~~~~~~-----y~~~~~~~~~~~~~~~~~~~ 212 (471) T protein:vir:10 140 RYACVDSKEVIPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWN--DKECSF-----YRHEKEKPLEELETFQAISL 212 (471) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEe--CCcEEE-----EEecCCcccccccccccccc Confidence 99999999999996554433333444444433334455666677765 222222 2221111100 00111 Q ss_pred cccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHh Q lcl|Aclame:pro 220 STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGML 299 (508) Q Consensus 220 ~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~ 299 (508) ...............+++++.|+++|+ |+. .|.|+|..+++|||+||.++|++++.++.....+++. . T Consensus 213 ~~~~~~~~~~~~~~~~~~g~iPvv~~~----n~~-----~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~---~ 280 (471) T protein:vir:10 213 IDTMNGDRSSDNSFKHDFGLVPFIPFK----NNE-----IETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVL---T 280 (471) T ss_pred cccccccccccccccCCCCceeEEEec----cCC-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeee---e Confidence 111101111222233566666666554 333 4899999999999999999999999998666666663 2 Q ss_pred cCCCCCCccCCcccceEeeecC---CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLS---DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) +.+++....+..+...+..+.. +...+.++++++++++.+++...++.+.+.|...++.+.- ++...|..||+++ T Consensus 281 g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~--~~~~~gn~Sg~Al 358 (471) T protein:vir:10 281 NYGGQDKQEFLEDLKRYKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNP--ETDKLGNSSGVAL 358 (471) T ss_pred cCCccccchhHHHhhcCCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCC--CcccccCccHHHH Confidence 3333333333222222333322 2234567999999999999999999999999888875543 3444567899999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) +++++.+..++..+++.|+.+|+++++.|+.+.+.. +..+|+|+|++++|.|..+.++.++++ T Consensus 359 k~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------------d~~~i~i~f~~~~p~n~~e~~~~~~kl- 421 (471) T protein:vir:10 359 KFLYSLLELKAGNMETQFRSGYATLVKMILKHLGLS----------------DKLKIKQTWTRNSINNDTEMAQVVSTL- 421 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------CCceeEEEeCCCCCCCHHHHHHHHHHH- Confidence 999999999999999999999999999998775321 234688999999999999999988876 Q ss_pred hCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC-CcccccCCCCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE-GGRSAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~-~~~~~~~~~~~g~ 508 (508) +|+||.+|++..+|+++| +++|++||++|+.+.... .+..+..++.+=| T Consensus 422 -~g~iS~et~~~~~p~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 422 -ATITSRENVAKSNPIVED--WQDELRLQKAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred -hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhcccccCCCCCccccC Confidence 589999999999999987 778999999887543222 2221111111111 No 23 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=1.3e-56 Score=326.90 Aligned_cols=453 Identities=15% Similarity=0.115 Sum_probs=295.1 Q ss_pred CChH------HHHHHHHHHHHHhhh-hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCc-cCC-----Cccc Q lcl|Aclame:pro 1 MGLI------QRIKDLFWKGAAATG-VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQ-ASD-----GIKK 67 (508) Q Consensus 1 m~~~------~~ik~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~-----~~~~ 67 (508) |=-| .++.++++....... ...-|++... --..+..++.+.++||.|+|+.+... ... ...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 75 (474) T protein:vir:96 1 MIVIFWPNEKPYHERVVEQIKPKYETQEEMIIRLIN-----DHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLK 75 (474) T ss_pred CeeeccCCCchhhhhHHHHhhhccCChHHHHHHHHH-----HHHHHHHHHHHHHHHhccCCcchhccchhcccccccccc Confidence 2222 112222211111100 0111122221 11246788999999999999755432 111 1223 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) .++|+++|||+.||++.|+|||++|+++++++ +.+++.|+++++ +++...+.+++..|+++|.+|+++|+|. |++++ T Consensus 76 ~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i 153 (474) T protein:vir:96 76 PDWRMFTNYHQNLVDQKVAYAVANPVTFSSDD-DKSLKTIQEVLN-HKWDDKLVDILTAASNKGIEWLQPYIDENGEFKT 153 (474) T ss_pred cchhcccchHHHHHHhhhhhhcccCceeecCc-hHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEE Confidence 45688999999999999999999999999865 456788999987 5799999999999999999999999974 78999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|+++||++.++......++++.+.. +. .. .+|+|+.. .|.+..+.. .............+... T Consensus 154 ~~~~p~~~~~v~d~~~~~~~~~~vr~~~~-~~--~~---~~~~yt~~-----~v~~~~~~~--~~~~~~~~~~~~~~~~~ 220 (474) T protein:vir:96 154 FRVPAEQAIPIWTNKERDTLKAFIRYYRL-DG--AE---RVEYWTDS-----DVTYYEYQD--GILIPDYYHGEEHIQSH 220 (474) T ss_pred EEEcccceEEEEcCCCCCceEEEEEEEee-cC--ce---EEEEEeCC-----eEEEEEecC--Cceeecccccccccccc Confidence 99999999999544332223334433332 21 11 23444311 122211211 11110000000000000 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) .+.. ...+++++.|+++|++ ++.|+|+|+.+++|||+||.++|++++.++.....+++. .+.+++.. T Consensus 221 ~~~~-~~~~~~g~iPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~---~g~~~~~~ 287 (474) T protein:vir:96 221 YYVG-NKRVSWGRVPFIPFKN---------NPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYIL---KGYEGQDL 287 (474) T ss_pred cccc-ccccCCCceeEEEecc---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeee---ecCCcccc Confidence 0000 1124555666665543 346999999999999999999999999998776677773 33344333 Q ss_pred ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 307 PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ..+..+...+..+..++ ++++++.++++++.+++...++.+.+.|...++.+.-++. ..++..||.+++++.+.+.++ T Consensus 288 ~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k 365 (474) T protein:vir:96 288 DEFMRNLKYYKAINVDG-DGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQD-KFGNSPSGIALKFMYSNLDLK 365 (474) T ss_pred cchhhhhhcCceEEecC-CCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCcccccc-ccccccHHHHHHHHHHHHHHH Confidence 34444444455555443 3456899999999999999999999999988876544332 224567999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +..+++.|+.+|+++++.|+.+... .....+|+|+|++++|.|..+.++. ++.+|+||.+|+ T Consensus 366 ~~~k~~~~~~~l~~~~~~i~~~~~~---------------~~~~~~i~i~f~~~~p~~~~e~~~~---~~~ag~iS~et~ 427 (474) T protein:vir:96 366 ANKLKNKTLTALQELLQYIIDFYKL---------------NIKVQDVEITFNFNVMVNELEQSQI---GVQSQYLSKETV 427 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEeccCCCcCHHHHHHH---HHhcCCCchHHH Confidence 9999999999999999998876421 1233468899999999997766654 345799999999 Q ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCCCC-cccccCCCCCCC Q lcl|Aclame:pro 467 LQRNYGMTDEQAAEELAKIQSEAPTDTFEG-GRSAILNGGDGE 508 (508) Q Consensus 467 l~~~~~~~deea~~e~~ri~~E~~~~~~~~-~~~~~~~~~~g~ 508 (508) +..+|+++| +++|++||++|+.+..... +..+...++.+| T Consensus 428 ~~~~~~v~d--~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d 468 (474) T protein:vir:96 428 VTNHPWVDD--PVAELERIEQDNIDFNKQLPPLEGDANGRAQD 468 (474) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHhcccccccccccccCC Confidence 999999976 6789999998875432221 112222222222 No 24 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=4.1e-56 Score=324.23 Aligned_cols=449 Identities=9% Similarity=0.001 Sum_probs=300.8 Q ss_pred CChHHHHHHHHHHHHHhhh---hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATG---VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~ 77 (508) |-+ ++.+....-. .+.-|.++.++. .....++..+++||.|+|+.+. +......+.+.|+++||| T Consensus 1 ~~~------~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~~~~~~l~~Yy~g~~~i~~-~~~~~~~~~~~ki~~n~~ 68 (499) T protein:vir:10 1 MAV------VIDKDLLDDVNEPNIEAINYAIREL-----QNRKKRLDKLSDYYNGKQEIEK-HEFDNATVEAANVMVNHA 68 (499) T ss_pred Ccc------chhhhHHhhhhcCCHHHHHHHHHHH-----HHHHHHHHHHHHHhccccchhc-CCcCcCCCCcceeecchH Confidence 333 1111111000 011122222211 2345678899999999998654 444455566788999999 Q ss_pred HHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCC--------------- Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN--------------- 142 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~--------------- 142 (508) +.||++.|+|||++|++++++++ ..++.|++++++|+|...+.+++..|+++|.+|.++|+++. T Consensus 69 ~~Iv~~~~~~l~g~p~~~~~~~~-~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (499) T protein:vir:10 69 KYITDMNVGFMTGNPVKYVAEKG-KNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLT 147 (499) T ss_pred HHHHHHHhhhhcccCceeecCCh-hHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccc Confidence 99999999999999999998654 45678999999999999999999999999999999999853 Q ss_pred ---eeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccc Q lcl|Aclame:pro 143 ---HIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPL 219 (508) Q Consensus 143 ---~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l 219 (508) .+++..++|.++||++.+.......++++.+...+..+.+.++++|+|+ +.+|.+ |...+...++.. T Consensus 148 ~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt-----~~~i~~--~~~~~~~~~~~~--- 217 (499) T protein:vir:10 148 PNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYM-----PQRIVE--YRTKTTMEVSAN--- 217 (499) T ss_pred cccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEe-----CCeEEE--EEecCCccccCc--- Confidence 3678999999999996665544344444444444444556677788876 223332 222221111100 Q ss_pred cccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHh Q lcl|Aclame:pro 220 STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGML 299 (508) Q Consensus 220 ~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~ 299 (508) +. + ....-++++.+|+++|++ ++.|+|+|+++++|||+||.++|++++.++.....+++ +. T Consensus 218 -----~~-~-~~~~~~~~g~vPvv~~~n---------~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv---~~ 278 (499) T protein:vir:10 218 -----DP-I-VYDGENLFGAVPIIEFRN---------NEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLV---TF 278 (499) T ss_pred -----ce-e-cccccCCCCccceEEecC---------CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceee---ee Confidence 00 0 001124556666666543 34589999999999999999999999999755444444 12 Q ss_pred cCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSN 379 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~ 379 (508) +.+......+......+.....+.+++..+++++++++.+++...++.+.+.|...++.+.-+++. .+|..||.+++++ T Consensus 279 G~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~gn~Sg~Al~~~ 357 (499) T protein:vir:10 279 GFGLGDDKDDIQRLKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEK-FMGNVSGEAMKFK 357 (499) T ss_pred cCccccccchhhhhhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchh-hcccchHHHHHHH Confidence 221111111111111122222333344568999999999999999999999998888765433322 2456799999999 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .+.+.+++..+++.|+.+|+++++.|+.+.+..+ ...+...++|.|++++|.|..+.++.++++ +| T Consensus 358 ~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~------------~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g 423 (499) T protein:vir:10 358 LFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKG------------ANDDASGCKISLVANIPSNLSDVVNNVKNA--DG 423 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CccccccceEEeCCCCCCCHHHHHHHHHHH--hc Confidence 9999999999999999999999999998865322 112234688999999999999999999887 69 Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC--------CCCcccccCCC-C------CCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDT--------FEGGRSAILNG-G------DGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~--------~~~~~~~~~~~-~------~g~ 508 (508) +||.||++..+|++++ +++|++||++|+.+.. ...+..+..++ . +|+ T Consensus 424 ~iS~et~~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (499) T protein:vir:10 424 IIPRKYTYSWLPDVDN--PQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKE 485 (499) T ss_pred cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCC Confidence 9999999999999977 6688888887753210 01110100000 0 111 No 25 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=7.7e-57 Score=328.22 Aligned_cols=451 Identities=15% Similarity=0.126 Sum_probs=292.6 Q ss_pred CChHHH------HHHHHHHHHHhhh-hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-C-----Cccc Q lcl|Aclame:pro 1 MGLIQR------IKDLFWKGAAATG-VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-D-----GIKK 67 (508) Q Consensus 1 m~~~~~------ik~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~-----~~~~ 67 (508) |-=|.+ ++.+|+..-..-. ...-|.+... .-..+..++..+.+||.|+|+.+..... . ...+ T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~ 75 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVR-----EHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETK 75 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCchhcccccccccccccccc Confidence 222211 2222221111000 0112222221 1124567899999999999986553221 1 1223 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) .++|+++|||+.||++.|+|||++|+++++++ +.+++.|+++++ |+|...+.++++.|+++|.+|+++|+|. |++++ T Consensus 76 ~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~-d~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~ 153 (478) T protein:vir:10 76 PDWRMYTNYHQNLVDQKVAYAVANPVTFGVDN-DKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKT 153 (478) T ss_pred ccceeccchHHHHHHHHHhhhccCCeeeecCC-hHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEE Confidence 45578999999999999999999999999865 456788999987 6899999999999999999999999984 88999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|.+++|++.++....-.+|++.+.. ++ .. ++|+|+. ..|.+..+. ... .. ........ T Consensus 154 ~~~~p~~~~~i~d~~~~~~~~~~v~~~~~-~~--~~---~~~~y~~-----~~i~~~~~~--~~~----~~-~~~~~~~~ 215 (478) T protein:vir:10 154 FRVPAEQAVPIWTNKERDELQAFIRVYEL-DG--AE---RVEYWTK-----DDVTYYELK--EGQ----LI-PDFYRSDD 215 (478) T ss_pred EEEcccceEEEEcCCCCCceEEEEEEEEe-cC--ce---EEEEEeC-----CeEEEEEEc--CCe----ee-cccccccc Confidence 99999999999544333333444444432 21 11 2344431 112211111 100 00 00000000 Q ss_pred CCCcc----eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCC Q lcl|Aclame:pro 227 ELAPQ----VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFD 302 (508) Q Consensus 227 ~l~~~----~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~ 302 (508) ...+. ...+++++.|++.|+ | ++.|+|+|+++++|||+||.++|++++.++.....+++. .+.+ T Consensus 216 ~~~~~~~~~~~~~~~~~vPvv~~~----n-----~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~---~g~~ 283 (478) T protein:vir:10 216 HIQPHYYQGNKLMSWGRVPFIPFK----N-----NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYIL---KGYE 283 (478) T ss_pred ccccceecccccccCCccceEEec----c-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeee---ecCC Confidence 11110 112344444444442 3 457999999999999999999999999998655556663 3333 Q ss_pred CCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 303 DEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) ++....+..+...+..+...+.++..++.++++++.+++...++.+.+.|...++.+..+++. .+|+.||.+++++++. T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~ 362 (478) T protein:vir:10 284 GEDMKDFMHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDK-FGNSPSGIALKFMYSN 362 (478) T ss_pred ccccchhhhhhhhcceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccc-cccccHHHHHHHHHHH Confidence 333222333333334444444445578899999999999999999999998887754433221 2367799999999999 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) +.+++..+++.|+.+|+++++.|+.+... .....+|+|+|++++|.|..+.++.++++ +|+|| T Consensus 363 l~~k~~~~~~~~~~~l~~~~~li~~~~g~---------------~~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS 425 (478) T protein:vir:10 363 LDLKANKLKNKTLTALQELLQYIIDFYRL---------------DVKVQDIEITFNFNVMVNELENSQIAMNS--TGLLS 425 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccccceEEecCCCCCCHHHHHHHHHHH--hCCCC Confidence 99999999999999999999998876321 12334688999999999999999888776 79999 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCccc------ccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRS------AILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~------~~~~~~~g~ 508 (508) .+|++..+|+++| +++|++||++|+.+........ +...+.+++ T Consensus 426 ~et~~~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (478) T protein:vir:10 426 KETILSNHAWVED--PVAEMERIEQENIELNQQLPDIEEGLNGEQQRQSENN 475 (478) T ss_pred hHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCC Confidence 9999999999876 6788999998876432221111 111111111 No 26 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=3.9e-56 Score=324.36 Aligned_cols=456 Identities=13% Similarity=0.077 Sum_probs=296.1 Q ss_pred CChHHHHHHHHHHH--HHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC--CCccccccccccch Q lcl|Aclame:pro 1 MGLIQRIKDLFWKG--AAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS--DGIKKKRLKNTINM 76 (508) Q Consensus 1 m~~~~~ik~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~~n~ 76 (508) ..+.......|+.. ...| ....|.+...+. -.++..+++++.+||.|+|+.+..+.. ....+...|+++|| T Consensus 3 ~~~~~~~~~~~~~~~~~~~l-~~~~i~~li~~~----~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~ 77 (506) T protein:vir:94 3 YDLTEHKQANLIYQESLENL-TPNKIMKFITHH----FNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSF 77 (506) T ss_pred cchhhhhcceeecccchhcC-CHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecch Confidence 11111111111000 0000 001111111110 124566799999999999976543322 22334567889999 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEE Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFY 155 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~ 155 (508) |+.||++.|+||||+|+++++++ +..++.|+.++++|+|...+.++++.|+++|.+|+++|+|+ |++++.+++|.+++ T Consensus 78 ~~~Iv~~~~~~l~G~p~~~~~~d-~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~ 156 (506) T protein:vir:94 78 AKYIADFQTSYSVGNPINVKLPD-DGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTF 156 (506) T ss_pred HHHHHHHhhhhhcccCceeecCc-chHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceE Confidence 99999999999999999999865 45688999999999999999999999999999999999975 78999999999999 Q ss_pred EEEEcCCCeEEEEEEEEEEEeecCCcEEE---EEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcce Q lcl|Aclame:pro 156 PLQSNTNDISEAAIASRTQRTESNQTKYY---TLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQV 232 (508) Q Consensus 156 Pi~~d~~~~~~~~f~~~~~~~~~~~~~~y---t~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~ 232 (508) |++.+.......++++.+...+..+...+ ++.+.|+ .. ++ ..|... ..+..+. .. T Consensus 157 ~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt--~~---~~--~~~~~~---~~~~~~~------------~~ 214 (506) T protein:vir:94 157 VIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWT--AD---TY--TLYNPT---PIMGKMQ------------VD 214 (506) T ss_pred EEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEe--Cc---eE--EEeccc---cCcccee------------cc Confidence 99666443334445544443333333333 3333332 11 11 112221 1111110 01 Q ss_pred eecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHh------------- Q lcl|Aclame:pro 233 TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGML------------- 299 (508) Q Consensus 233 ~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~------------- 299 (508) ..++++..|+++|+ |+ +.|+|+|..+++|||+||..+|++++.++.....+++-.... T Consensus 215 ~~~~~g~vPvv~~~----n~-----~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 285 (506) T protein:vir:94 215 TTKPITTFPVVEFK----NS-----NFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTI 285 (506) T ss_pred ccccCCccceEEec----CC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccc Confidence 12455555555553 33 358999999999999999999999999875554444422111 Q ss_pred -cCCCCCCccC-------CcccceEeeecCC-------CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcc Q lcl|Aclame:pro 300 -RFDDEHKPTF-------DTEQNVYVGVLSD-------DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) Q Consensus 300 -~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 364 (508) ..++++...+ ..+.+....+... ...+..++.++++++.+++...++.+.+.|...++.+.-++. T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~ 365 (506) T protein:vir:94 286 DPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDE 365 (506) T ss_pred cccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccc Confidence 0111111111 1111111111111 122345888999999999999999999999988876653322 Q ss_pred ccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC Q lcl|Aclame:pro 365 YSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN 444 (508) Q Consensus 365 ~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d 444 (508) ..++..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+.+..+ +....+..+|+|.|++++|.| T Consensus 366 -~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~----------~~~~~d~~~i~i~f~~~~p~d 434 (506) T protein:vir:94 366 -NFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIH----------GDWTFDPQELTFTFRDNLPAD 434 (506) T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CccccccccceEEeCCCCCcC Confidence 234677999999999999999999999999999999999998876422 112223446889999999999 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC------CCCC Q lcl|Aclame:pro 445 KDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG------GDGE 508 (508) Q Consensus 445 ~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~------~~g~ 508 (508) ..+.++++.++ +|+||.+|++..+|+++| +++|++||++|+.......+..+..+. .+++ T Consensus 435 ~~e~a~~~~kl--~g~iS~et~~~~lp~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (506) T protein:vir:94 435 NISQIKALVQA--GATLPQKYLYQQLPGVTN--PQDIVDMMKEQSANGDYSFDQNGVISNDGQTNTTATQ 500 (506) T ss_pred HHHHHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHhhcchhhcCCCcccCccccccc Confidence 99999988876 599999999999999987 668899999887644333222211111 1111 No 27 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=1.8e-55 Score=320.70 Aligned_cols=459 Identities=12% Similarity=0.061 Sum_probs=303.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccc------cc-cCCHHHHHHHHHHHHHhcCCC-ccccCccCCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDP------RI-SIDPDEYVRIQTDLDYYSDKL-QYIHYQASDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~------~i-~~~~~~~~~i~~~~~~Y~g~~-~~~~~~~~~~~~~~~~~~ 72 (508) =+.-.-++--|.+..+.-+...+++...... -| ....+...+|+++.+||.|++ +.++........+.++|+ T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki 90 (502) T protein:vir:48 11 TGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRRKDNEMADKRA 90 (502) T ss_pred chhHHHhhcccChhHHhhhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccee Confidence 1111112222223333323223322222100 00 012345678999999999975 455544444445566789 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEE Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDN---NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAW 148 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~---~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~ 148 (508) ++|||+.||+..|+|||++|+++++.++ +..++.|++++++|+|...+.+++..++++|.+|+++|.|+ |++++.+ T Consensus 91 ~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~ 170 (502) T protein:vir:48 91 VHNYGRMISKFKTGYLAGNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKR 170 (502) T ss_pred ecchHHHHHHHHhhhhcccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEE Confidence 9999999999999999999999998653 34677899999999999999999999999999999999985 8999999 Q ss_pred EcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 149 VRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) ++|.+++|++.+.......+|++.+......++ ++++|+|+ ++..|+. ...... .. + T Consensus 171 ~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~--~~~~~iyt--~~~i~~~-----~~~~~~---~~-----~------ 227 (502) T protein:vir:48 171 LSPLETFVIYDNSLEDNSIAAVRYYNRGTLQNA--KDVVEIYT--NQHIYTL-----DASDSF---NE-----I------ 227 (502) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEEeecCCc--EEEEEEEe--CCeEEEE-----EeCCce---ee-----c------ Confidence 999999999544322223344444433333333 34567665 2222222 111100 00 0 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcC-CCCCCc Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRF-DDEHKP 307 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~-~~~~~~ 307 (508) ....+++++.|+++|+ | .+.|+|+|++++++||+||.++|++++.++.....+++....... .+..+. T Consensus 228 --~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~ 296 (502) T protein:vir:48 228 --SVTPHAFGTVPITEFL----N-----NADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQAS 296 (502) T ss_pred --cceecCCCccceEEec----C-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccchh Confidence 0112445555666554 3 346999999999999999999999999998776666663322211 111111 Q ss_pred cCCcccceEeeecC---CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 308 TFDTEQNVYVGVLS---DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY 384 (508) Q Consensus 308 ~~~~~~~~~~~~~~---~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~ 384 (508) .+.....++..... +...+..++.++++++.+++...++.+.+.|...++.+..+++. .+|..||++++++.+.+. T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~-~~~n~Sg~Alk~~~~~l~ 375 (502) T protein:vir:48 297 DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNH-FSGNASGEALKYKLFGLD 375 (502) T ss_pred hhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCccc-cccCchHHHHHHHHHHHH Confidence 12222212221111 12234568899999999999999999999998888776544432 246679999999999999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ 464 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e 464 (508) +++..+++.|+.+|+++++.|+.+....+. ........|+|+|++++|.|..++++.+.++ +|+||.+ T Consensus 376 ~k~~~~~~~~~~~l~~~~~li~~~~~~~~~----------~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~e 443 (502) T protein:vir:48 376 QDRVDTQSQFTQGLKRRYRLAARIGSLVNE----------FKDFDESRLKITFTPNLPKSLYEQVSILNDL--GGQVSQE 443 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------ccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHH Confidence 999999999999999999999988654321 1112334689999999999999999988877 5899999 Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccCCCC--CCcccccC--CCCCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDEQAAEELAKIQSEAPTDTF--EGGRSAIL--NGGDGE 508 (508) Q Consensus 465 t~l~~~~~~~deea~~e~~ri~~E~~~~~~--~~~~~~~~--~~~~g~ 508 (508) |++..+|+++| +++|++||++|+.+... .......+ ++.|+. T Consensus 444 t~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~ 489 (502) T protein:vir:48 444 TALSLSGLVEN--PTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEV 489 (502) T ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHhhhhhcccccccccccccCCCc Confidence 99999999876 67899999988753211 11111111 111111 No 28 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=1.2e-55 Score=321.58 Aligned_cols=463 Identities=10% Similarity=0.032 Sum_probs=301.7 Q ss_pred CChH----------HHHHHHHHHHHHhhhhhhh-----------hHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC Q lcl|Aclame:pro 1 MGLI----------QRIKDLFWKGAAATGVTGS-----------LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY 59 (508) Q Consensus 1 m~~~----------~~ik~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~ 59 (508) |==+ .-+..-|++..+..+.-.+ |.++.. .....+..+++++.+||.|+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~----~~~~~~~~r~~~l~~Yy~g~~~il~~ 76 (511) T protein:vir:93 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIE----HHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhccHHHHHHHHH----HHHHhhHHHHHHHHHHhcccCccccc Confidence 1111 1111122222222221110 111111 01123456888999999999997654 Q ss_pred ccC-CCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 60 QAS-DGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 60 ~~~-~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ... ....+.++|+++|||+.||+..++||+++|+++++++ +..++.|++++++|+|...+.+++..|+.+|.+|+++| T Consensus 77 ~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy 155 (511) T protein:vir:93 77 LTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMI 155 (511) T ss_pred cCcCcccccCcceeecchHHHHHHHHhhhhcccCeeeccCC-hHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEE Confidence 332 2233455788999999999999999999999999865 55678999999999999999999999999999999999 Q ss_pred Ee-CCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEE--eecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 139 ID-GNHIKIAWVRADQFYPLQSNTNDISEAAIASRTQR--TESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 139 ~d-~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~--~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) .| +|++++.+++|.+++|++.+.......++++.+.. .+....+.+.++|+|+ ++ +|.+ |...+.. T Consensus 156 ~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt--~~---~i~~--~~~~~~~---- 224 (511) T protein:vir:93 156 RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SH---GVYR--YLTSRTN---- 224 (511) T ss_pred eCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEe--CC---cEEE--EEecCCC---- Confidence 97 57899999999999999655433333344433332 2333334555677765 22 2221 2222211 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQ 295 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~ 295 (508) ...+. ........++++.+|+++|+ | ++.|.|+|+++++|||+||.++|++++.++.....+++. T Consensus 225 ~~~~~------~~~~~~~~~~~g~vPvv~~~----n-----n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~ 289 (511) T protein:vir:93 225 GLKLT------PRENGFESHSFERMPITEFS----N-----NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLI 289 (511) T ss_pred ccccc------cccccccccCCCccceEEec----C-----CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceee Confidence 00000 00111122455566665554 3 235899999999999999999999999998666666663 Q ss_pred hHHhcCCCCCCccCCcc-------cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc Q lcl|Aclame:pro 296 PGMLRFDDEHKPTFDTE-------QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND 368 (508) Q Consensus 296 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 368 (508) ..+...+.......... .....+...+...+..++.++++++.++....++.+.+.|...++.+.-+++ ..+ T Consensus 290 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~-~~~ 368 (511) T protein:vir:93 290 KGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFS 368 (511) T ss_pred ecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-ccc Confidence 33332222221111111 1111112223344556889999999999999999999999888876554332 223 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+....+. .........+++.|++++|.|..++ T Consensus 369 ~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~---------~~~~~d~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:93 369 GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS---------IDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------cccccccccceEEeCCCCCCCHHHH Confidence 6679999999999999999999999999999999999887543221 1111223468899999999999999 Q ss_pred HHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCC-----CCcccccCCCCCCC Q lcl|Aclame:pro 449 LEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF-----EGGRSAILNGGDGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~-----~~~~~~~~~~~~g~ 508 (508) ++++.++ +|+||.+|++..+|++++ +++|++||++|+..... .....+..++..++ T Consensus 440 ~~~~~kl--~g~iS~et~~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:93 440 LKAYIDS--GGKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred HHHHHHH--hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC Confidence 9988877 599999999999999976 67889999888642211 11111111111111 No 29 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=1.2e-55 Score=321.70 Aligned_cols=446 Identities=9% Similarity=0.027 Sum_probs=298.1 Q ss_pred CChH--------HHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CCccccccc Q lcl|Aclame:pro 1 MGLI--------QRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DGIKKKRLK 71 (508) Q Consensus 1 m~~~--------~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~ 71 (508) |.=. +.|+.++.+ | -..+..+++++.+||.|+|+.++.... ....+.++| T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~----------------~-----~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~k 89 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEH----------------H-----MDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNR 89 (512) T ss_pred cCchhhhhhhhHHHHHHHHHH----------------H-----HHhhHHHHHHHHHHhcccCccccccCcccccccCcce Confidence 2221 222222211 1 112456788899999999987654332 223345678 Q ss_pred cccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEc Q lcl|Aclame:pro 72 NTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVR 150 (508) Q Consensus 72 ~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~ 150 (508) +++|||+.||+..|+|||++|+++++++ +.+++.|++++++|+|...+.+++..|+++|.+|+++|+|+ |++++.+++ T Consensus 90 i~~n~~k~Ivd~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~ 168 (512) T protein:vir:97 90 VAHDYASYISDFINGYFLGNPIQCQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSD 168 (512) T ss_pred eecchHHHHHHHHhhhhcccCceeccCC-hHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Confidence 8999999999999999999999999854 55678999999999999999999999999999999999974 789999999 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEE--EeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQ--RTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~--~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) |.+++|++.+.......++++.+. ..+....+...++|+|+ ++..|+ |...+... ..+. .. T Consensus 169 p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt--~~~i~~-----~~~~~~~~----~~~~------~~ 231 (512) T protein:vir:97 169 AMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHGVYR-----YLTSRTNG----LKLT------PR 231 (512) T ss_pred ccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEe--CCcEEE-----EEecCCCc----cccc------cc Confidence 999999954443332333333332 22222334455667665 222222 22222110 0000 00 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCcc Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPT 308 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~ 308 (508) ......++++.+|+++|+ | ++.|.|+|+++++|||+||.++|++++.++.....+++-..+...++..... T Consensus 232 ~~~~~~~~~g~vPvv~~~----n-----n~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~ 302 (512) T protein:vir:97 232 ENGFESHSFERMPITEFS----N-----NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRK 302 (512) T ss_pred ccccccccCcccceEeec----C-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhh Confidence 111122445555555543 3 2468999999999999999999999999987766666633322222221111 Q ss_pred CC--------cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHH Q lcl|Aclame:pro 309 FD--------TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNN 380 (508) Q Consensus 309 ~~--------~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~ 380 (508) .. .....+.....+.+++..++.++++++.+++...++.+.+.|...++.+.-+++. .+|..||.+++++. T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~-~~gn~Sg~Al~~~~ 381 (512) T protein:vir:97 303 QKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDN-FSGTQSGEAMKYKL 381 (512) T ss_pred hhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCccc-ccccchHHHHHHHH Confidence 11 1111122222333444568889999999999999999999998888765544332 23667999999999 Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 381 SMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) Q Consensus 381 ~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi 460 (508) +.+.+++..+++.|+.+|+++++.|+.+....+.. ........|+++|++++|.|..+.++.+.++ +|+ T Consensus 382 ~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~---------~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl--~gi 450 (512) T protein:vir:97 382 FGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI---------DANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGK 450 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------ccccccccceEEeCCCCCcCHHHHHHHHHHH--hcc Confidence 99999999999999999999999998876543211 1112233688999999999999999988877 499 Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCC-----CCcccccCCCCCCC Q lcl|Aclame:pro 461 LSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF-----EGGRSAILNGGDGE 508 (508) Q Consensus 461 ~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~-----~~~~~~~~~~~~g~ 508 (508) ||.+|++..+|++++ +++|++||++|+..... .+...++.++...+ T Consensus 451 iS~et~~~~l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (512) T protein:vir:97 451 ISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 501 (512) T ss_pred CchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC Confidence 999999999999976 67889999988643211 11111111111111 No 30 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=1.9e-55 Score=320.56 Aligned_cols=463 Identities=11% Similarity=0.044 Sum_probs=302.1 Q ss_pred CChH----------HHHHHHHHHHHHhhhhhh-----------hhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC Q lcl|Aclame:pro 1 MGLI----------QRIKDLFWKGAAATGVTG-----------SLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY 59 (508) Q Consensus 1 m~~~----------~~ik~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~ 59 (508) |==+ .-+..-|.+..+..+.-. .|.++..+ .-.....+++++.+||.|+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~i~~~i~~----~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:10 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEH----HMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhcCCccCchhhhhcccCHHHHHHHHHH----HHHhhHHHHHHHHHHhcccCccccc Confidence 1101 111122222222211111 11111110 0112356788899999999987654 Q ss_pred ccC-CCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 60 QAS-DGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 60 ~~~-~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ... ....+.++|+++|||+.||+..++|||++|+++++++ +.+++.|++++++|+|...+.+++..++.+|.+|.++| T Consensus 77 ~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy 155 (511) T protein:vir:10 77 LTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD-KDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMI 155 (511) T ss_pred cCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc-hHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEE Confidence 332 2233456788999999999999999999999999865 55678999999999999999999999999999999999 Q ss_pred EeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEE--eecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 139 IDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQR--TESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 139 ~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~--~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) .|+ |++++.+++|.+++|++.+.......++++.+.. .+....+...++|+|+ +++.|+ |...... T Consensus 156 ~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt--~~~i~~-----~~~~~~~---- 224 (511) T protein:vir:10 156 RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFT--SHGVYR-----YLTSRTN---- 224 (511) T ss_pred eCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEe--CCcEEE-----EEecCCC---- Confidence 985 7899999999999999655443333444443332 2333334555667765 222221 2211111 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQ 295 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~ 295 (508) ...+. ........++++.+|+++|+ |+ ..|.|+|++++++||+||.++|++++.++.....++|. T Consensus 225 ~~~~~------~~~~~~~~~~~~~vPvv~f~----nn-----~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~ 289 (511) T protein:vir:10 225 GLKLT------PRENGFESHSFERMPITEFS----NN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLI 289 (511) T ss_pred ccccc------ccccccccccCcceeEEEec----CC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeee Confidence 00000 00011112345555555554 32 35899999999999999999999999998766776664 Q ss_pred hHHhcCCCCCCccCCc------cc-ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc Q lcl|Aclame:pro 296 PGMLRFDDEHKPTFDT------EQ-NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND 368 (508) Q Consensus 296 ~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 368 (508) ..+...+......... .. ....+...+...+..++.++++++.+++...++.+.+.|...++.+.-+++. .+ T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~-~~ 368 (511) T protein:vir:10 290 KGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDN-FS 368 (511) T ss_pred eccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cc Confidence 4333222222211111 11 1112222233344568889999999999999999999998888765433322 23 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+....... ........++|+|++++|.|..+. T Consensus 369 ~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~---------~~~~d~~~i~i~f~~~~p~d~~~~ 439 (511) T protein:vir:10 369 GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI---------DANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc---------ccccccceeeEEeCCCCCcCHHHH Confidence 56799999999999999999999999999999999998876543211 111223468999999999999999 Q ss_pred HHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCC-----CCcccccCCCCCCC Q lcl|Aclame:pro 449 LEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF-----EGGRSAILNGGDGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~-----~~~~~~~~~~~~g~ 508 (508) ++++.+++ |+||.+|++..+|++++ +++|++||++|+..... .+...+..++...| T Consensus 440 ~~~~~kl~--G~iS~et~~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:10 440 LKAYIDSG--GKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred HHHHHHHh--ccCcHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC Confidence 99998874 99999999999999976 67889999988643211 11111111111111 No 31 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=1.5e-56 Score=326.56 Aligned_cols=451 Identities=15% Similarity=0.121 Sum_probs=295.3 Q ss_pred CChHH------HHHHHHHHHHHh-hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC------CCccc Q lcl|Aclame:pro 1 MGLIQ------RIKDLFWKGAAA-TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS------DGIKK 67 (508) Q Consensus 1 m~~~~------~ik~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~------~~~~~ 67 (508) |-=|. .++.+|+..--. -.....|++... --.++..++..+.+||.|+|+.++.... ....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 75 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVR-----EHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETK 75 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccccccchhhhccccccccc Confidence 21110 112222111000 001112222222 1124667899999999999986653211 12234 Q ss_pred cccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 68 KRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 68 ~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) .+.|+++|||+.||++.|+|||++|+++++++ +.+++.|+.+++ |+|...+.++++.|+++|.+|+++|+|. |++++ T Consensus 76 ~~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~~-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~ 153 (478) T protein:vir:10 76 PDWRMYTNYHQNLVDQKVAYAVANPVTFGVDN-DKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKT 153 (478) T ss_pred ccceeccchHHHHHHHHhhhhcccCceeecCC-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEE Confidence 45688999999999999999999999999855 556788999986 6899999999999999999999999985 79999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|.+++|++.+.....-.+|++.+...+. +++|+|+. .+|.+..+. +. .+...+ ...+. T Consensus 154 ~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~------~~~~~y~~-----~~i~~~~~~--~~-~~~~~~----~~~~~ 215 (478) T protein:vir:10 154 FRVPAEQAVPIWTNKERDELQAFIRVYELDGA------ERVEYWTK-----DDVTFYELK--EG-QLIPDF----YRSED 215 (478) T ss_pred EEEcccceEEEEcCCCCCceEEEEEEEeeeCc------eEEEEEeC-----CcEEEEEec--CC-eeeccc----ccccc Confidence 99999999999544322222333333332211 12344431 122221111 10 000000 00001 Q ss_pred CCCc----ceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCC Q lcl|Aclame:pro 227 ELAP----QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFD 302 (508) Q Consensus 227 ~l~~----~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~ 302 (508) ...+ ....+++++.|++.|+ | ++.|+|+|+++++|||+||.++|++++.++.....+++ +.+.+ T Consensus 216 ~~~~~~~~~~~~~~~g~vPvv~~~----n-----~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~---~~g~~ 283 (478) T protein:vir:10 216 HIQPHYYQGNKLMSWGRVPFIPFK----N-----NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYI---LKGYE 283 (478) T ss_pred ccccceecccccccCCcceEEEec----c-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCccee---eecCC Confidence 1111 1112345555555443 3 34699999999999999999999999999866566666 33334 Q ss_pred CCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 303 DEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) ++....+..+...+.++..++..+++++.++++++.+++...++.+.+.|...++.+.-++. ..+|..||.+++++++. T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Ai~~~~~~ 362 (478) T protein:vir:10 284 GEDMKDFMHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQD-KFGNSPSGIALKFMYSN 362 (478) T ss_pred cccccchhhhhhhCceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCcc-ccccchHHHHHHHHHHH Confidence 44333344443444444444445567999999999999999999999999888775432221 22467799999999999 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) +..++..+++.|+.+|+++++.|+.+... .....+|+|+|++++|.|..+.++.+.++ +|+|| T Consensus 363 l~~k~~~~~~~~~~~l~~~~~li~~~~~~---------------~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS 425 (478) T protein:vir:10 363 LDLKANKLKNKTLTALQELLQYIIDFYRL---------------DVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLS 425 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCC Confidence 99999999999999999999998876421 12234688999999999999888887665 69999 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcc-cccC--------CCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGR-SAIL--------NGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~-~~~~--------~~~~g~ 508 (508) .+|+++.+|+++| +++|++||++|+.+...+... .++. .++.+| T Consensus 426 ~et~i~~~~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 426 KETILGNHSWVQD--PVAEMERIEQENIELNQQLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred hHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhccccCCCCcccccccCcCCCCC Confidence 9999999999976 789999999887653322111 1111 111111 No 32 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=1.8e-55 Score=320.76 Aligned_cols=445 Identities=11% Similarity=0.050 Sum_probs=303.6 Q ss_pred CCh-HHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGL-IQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~-~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) |.+ .+.|++++.+. ..++..+++.+++||.|+|+.+......+..+..+|+++|||+. T Consensus 13 ~~~~~~~~~~~i~~~---------------------~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~ 71 (489) T protein:vir:99 13 SKLWIDQLKNYISRF---------------------KAEQLERLKELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKY 71 (489) T ss_pred CCCCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcccCccccccccccccCCcceeecchHHH Confidence 444 33344443221 11345688999999999998766433333344556889999999 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-----CCeeEEEEEcCCeE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-----GNHIKIAWVRADQF 154 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-----~~~~~i~~v~a~~~ 154 (508) ||+..|+|||++|+++++++ +..+++|+.++++|+|...+.++++.++++|.+|..+|+. ++++++.+++|.++ T Consensus 72 iv~~~~~~l~g~~~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~ 150 (489) T protein:vir:99 72 ITVFEQGYMLGVPVEYKNEN-KDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQT 150 (489) T ss_pred HHHHHhhhhccCCceeecCC-hhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccce Confidence 99999999999999999855 5568899999999999999999999999999999999873 46899999999999 Q ss_pred EEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceee Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI 234 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~ 234 (508) +|++.+......+++++.+. .+...++.+.++++|+ ++..|+ |+......-+.. + . ...- T Consensus 151 ~~v~dd~~~~~~~~~i~~~~-~~~~~~~~~~~~~~y~--~~~i~~-----~~~~~~~~~~~~--~---------~-~~~~ 210 (489) T protein:vir:99 151 FVIYDDTYQRNSLMAVHFYD-IDYGSGKRKQIIKAYT--SDTIYT-----YEDYNLETKGMR--L---------K-DYEG 210 (489) T ss_pred EEEEcCCCCCceEEEEEEEE-EecCCCceEEEEEEEe--CCcEEE-----EEecCCCcccce--e---------c-cccc Confidence 99965443332333333333 3333445566777765 222222 222221111110 0 0 0011 Q ss_pred cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCC------------ Q lcl|Aclame:pro 235 SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFD------------ 302 (508) Q Consensus 235 ~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~------------ 302 (508) ++++..|++.|+ |+ +.|.|+|.++++|||+||.++|++++.++.....+++...+...+ T Consensus 211 ~~~g~vPvv~~~----n~-----~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~ 281 (489) T protein:vir:99 211 HFFKGVPVNEYA----NN-----EERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDGRL 281 (489) T ss_pred ccCCceeEEEee----cC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhccc Confidence 345555555554 33 358999999999999999999999999976555555422221111 Q ss_pred -CCCCccCCcc--cceEeeecCC---CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 303 -DEHKPTFDTE--QNVYVGVLSD---DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 303 -~~~~~~~~~~--~~~~~~~~~~---~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) ..+......+ ......+..+ ...+..++.++++++.+++...++.+.+.|...++.+.-++ ...+|..||.++ T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~~~~n~Sg~Al 360 (489) T protein:vir:99 282 NPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQD-MKFSGVQSGESM 360 (489) T ss_pred ccccccccccccccceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCccccc-ccccccchHHHH Confidence 1111111111 1111111111 11233578899999999999999999999988777553222 223467899999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) +++.+.+.+++..+++.|+.+|+++++.|+.+....+... .......+|+|+|++++|.|..+.++++.+++ T Consensus 361 ~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~--------~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~ 432 (489) T protein:vir:99 361 KYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEA--------TTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY 432 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------ccccccccceEEeCCCCCcCHHHHHHHHHHHh Confidence 9999999999999999999999999999998865432111 11112235889999999999999999988874 Q ss_pred hCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+||.+|++..+|+++++++++|++||++|+....... +....++.+|| T Consensus 433 --giis~et~~~~l~~v~~~d~~~E~~ri~~E~~~~~~~~-~~~~~~~~~~~ 481 (489) T protein:vir:99 433 --GIVSDQTIFEILNTVTGVDAEAELKRLKEEADKKQSLP-EPRLVGDASGQ 481 (489) T ss_pred --ccCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccc-cccccCCCCCC Confidence 99999999999999999899999999998875433322 22334444444 No 33 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=5.9e-55 Score=317.88 Aligned_cols=459 Identities=12% Similarity=0.062 Sum_probs=298.6 Q ss_pred CCh--HHHHHHHHHHHHHhhhhhhhhHHhhcc------ccc-cCCHHHHHHHHHHHHHhcCCC-ccccCccCCCcccccc Q lcl|Aclame:pro 1 MGL--IQRIKDLFWKGAAATGVTGSLSKITDD------PRI-SIDPDEYVRIQTDLDYYSDKL-QYIHYQASDGIKKKRL 70 (508) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~~~~~~~~~~~------~~i-~~~~~~~~~i~~~~~~Y~g~~-~~~~~~~~~~~~~~~~ 70 (508) =+. -.+++-.|.+..+..+...+++..... .-| ........+++++.+||.|++ ..++........+.++ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~~~~~~~~~~~ 87 (501) T protein:vir:96 8 DSTGQERVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRRKDNEMADK 87 (501) T ss_pred ecccceeccccccchhHHhhhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccccCccccccc Confidence 000 000111222222222222222211100 000 001234567899999999985 4554443444445567 Q ss_pred ccccchHHHHHHHHHHhhhcCcceEeeCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVFNEKAEIHVKDN---NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKI 146 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~---~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i 146 (508) |+++|||+.||++.|+|||++|+++++.++ +.++++|++++++|+|...+.+++..|+++|.+|+++|+|+ |.+++ T Consensus 88 ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i 167 (501) T protein:vir:96 88 RAVHNYGRMISKFKTGYLAGNPIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRI 167 (501) T ss_pred eeecchHHHHHHHHhhhhcccCeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEE Confidence 899999999999999999999999998653 45678899999999999999999999999999999999984 78999 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+++|.+++|++.+.......+|++.+......+. .+++++|+ ++..|+. ..... +..+ T Consensus 168 ~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~~--~~~~~vyt--~~~i~~~-----~~~~~---~~~~--------- 226 (501) T protein:vir:96 168 KRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQSA--KDVVEIYT--DEHIYTL-----DASDD---FNEI--------- 226 (501) T ss_pred EEEccceeEEEEcCCCCCceEEEEEEEEeecCCCc--EEEEEEEc--CCcEEEE-----eeCCC---ceec--------- Confidence 99999999999554433333344444443332222 34456654 2222222 21110 0000 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhc-CCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLR-FDDEH 305 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~-~~~~~ 305 (508) ....++++++|+++|+ | ++.|+|+|.++++|||+||.++|++++.++.....+++...+.. ..++. T Consensus 227 ----~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~ 293 (501) T protein:vir:96 227 ----SVTTHAFGTVPITEYL----N-----NIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ 293 (501) T ss_pred ----cccccCCCccceEEec----C-----CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccc Confidence 0112345566666553 3 35699999999999999999999999999865555555322211 11111 Q ss_pred CccCCcccceEeeec---CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVL---SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 306 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) ...+.....+..... .+...+..++.+++++..++....++.+.+.|...++.+...++. .++..||++++++.+. T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~ 372 (501) T protein:vir:96 294 ASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTN-FSGNTSGEALKYKLFG 372 (501) T ss_pred hhhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCccc-ccccchHHHHHHHHHH Confidence 111111111111111 112233457888999999999999999999998888766544432 2366799999999999 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) +..++..+++.|+.+|+++++.|+.+....+. ........|+|.|++++|.|..+.++.+.+++ |+|| T Consensus 373 l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~----------~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~--g~iS 440 (501) T protein:vir:96 373 LDQDRVDTQSQFTKGLKRRYRLAARIGSLVNE----------FKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQVS 440 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCc Confidence 99999999999999999999999988654321 11122345889999999999999999888874 8999 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC--CcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE--GGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~--~~~~~~~~~~~g~ 508 (508) .+|++..+|+++| +++|++||++|+.+.... .++.....+...+ T Consensus 441 ~et~~~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 486 (501) T protein:vir:96 441 QETALSLSGLVES--PNEELDKINKEMSEIDFKGYSNDFNEHVGKYTD 486 (501) T ss_pred hHHHHHhCCCCCC--HHHHHHHHHHHHHHhhccccccchhhcccccCC Confidence 9999999999976 678899999887543221 1111111111111 No 34 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=3.1e-55 Score=319.39 Aligned_cols=459 Identities=12% Similarity=0.075 Sum_probs=302.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-C--------Cccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-D--------GIKKKRLK 71 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~--------~~~~~~~~ 71 (508) |-+ +.++.+|.+.+.. |. ..++..++...++||.|+|+.+..+.. . ...+.+.| T Consensus 8 ~~~-~~~~~~~~~~i~~------------~~----~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnk 70 (537) T protein:vir:78 8 KPI-DQLGGLLNTEITT------------YM----ASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVK 70 (537) T ss_pred ccH-HHHHHHHHHHHHH------------HH----HHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccc Confidence 332 3344444322211 11 335678899999999999987654321 1 11124468 Q ss_pred cccchHHHHHHHHHHhhhcCcceEeeCCc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEE Q lcl|Aclame:pro 72 NTINMAKTAARRIASVVFNEKAEIHVKDN--NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAW 148 (508) Q Consensus 72 ~~~n~~~~iv~~~A~ll~~e~~~i~~~~~--~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~ 148 (508) +++|||+.||++.|+||||.|++++++++ +.+++.|+.+++ ++|+..+.+++..|+.+|.+|.++|+|. |.+++.+ T Consensus 71 i~~nf~k~Ivd~~~~yl~G~Pv~~~~~d~~~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~ 149 (537) T protein:vir:78 71 ISHGFFTELVDQLAQYLLSNGVEVKVKDEDNTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQT 149 (537) T ss_pred cccchHHHHHHHHhhhhcccCceeecCcchhHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEE Confidence 89999999999999999999999998653 345667888875 7899999999999999999999999985 7899999 Q ss_pred EcCCeEEEEEEcCCCeEEEEEEEEEEEeec--CCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc---ccCccccccccc Q lcl|Aclame:pro 149 VRADQFYPLQSNTNDISEAAIASRTQRTES--NQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD---IVGNQVPLSTLP 223 (508) Q Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~--~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~---~lG~~v~l~~~~ 223 (508) ++|.++||++.+++.+...+.++....... ...+..+++|+|+-. +. .+..+.+.... ..+..+....++ T Consensus 150 i~p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~--~i---~~y~~~~~~~~~~~~~~~~~~~~~i~ 224 (537) T protein:vir:78 150 VDGLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEE--AV---CYYIQDDEGVSTTYKLDEAYNPNPAP 224 (537) T ss_pred EccceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCC--cE---EEEEecCCcccccccccccccccccc Confidence 999999999766777666555443332222 234566778887622 21 11111111100 001111111111 Q ss_pred cccCC------------CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 224 VYKEL------------APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKH 291 (508) Q Consensus 224 ~~~~l------------~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 291 (508) .+... ......+++++.|++.| .||. .|+|+|.++++|||+||.++|++++.++..... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f----~nn~-----~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ 295 (537) T protein:vir:78 225 HVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLL----YNNK-----DGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEA 295 (537) T ss_pred eeeeccccccccccccccccccccCCcceeEEEe----ccCc-----cCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCc Confidence 10000 01111233444444433 3433 589999999999999999999999999876667 Q ss_pred eeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccc Q lcl|Aclame:pro 292 IAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVK 371 (508) Q Consensus 292 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~ 371 (508) +++ +.+.+++....+..+.+.+..+..++ ++++++.++++++.++....++.+.+.|...+. .+. +++...|.. T Consensus 296 ilv---i~g~~~~~~~~~~~~l~~~~~i~v~~-d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~-~~~-~~~~~~gn~ 369 (537) T protein:vir:78 296 IYV---VKGFSGDSTDKLRQNIKAKKMIGVNG-DNAGMEIQTVSIPYEARKAKMDIDVENIYRSGM-GFN-STAVGDGNV 369 (537) T ss_pred eee---eecCCCccchhHHHHHhhcCceeecC-CCCceeEEEecCCHHHHHHHHHHHHHHHHHhcC-CCC-CccccccCC Confidence 777 34444444444444444455554443 334689999999999999999999999876542 222 244455778 Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 372 TATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE 451 (508) Q Consensus 372 TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~ 451 (508) |+.+++++++.+.++++.+++.|+.+|+++++.|+.+.+..+ ........|.|+|++++|.|..+.+++ T Consensus 370 SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~-----------~~~~d~~~i~i~f~~~~P~n~~e~a~~ 438 (537) T protein:vir:78 370 TNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRG-----------LGEYDSNDICFEIEPHVLANELDIATT 438 (537) T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CcccccceeeEEeccCCCCCHHHHHHH Confidence 999999999999999999999999999999999999876432 111233468999999999999999999 Q ss_pred HHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHH------------hccC--CCCCCcccccCC-------------C Q lcl|Aclame:pro 452 DAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQS------------EAPT--DTFEGGRSAILN-------------G 504 (508) Q Consensus 452 ~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~------------E~~~--~~~~~~~~~~~~-------------~ 504 (508) +.+++++|++|.+|+++.+|.++|.|.++..++..+ ++++ +..+.......+ - T Consensus 439 ~~~l~~~giiS~eT~l~~~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 518 (537) T protein:vir:78 439 RKTEAETEALKIGNIMTVAPRIGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQ 518 (537) T ss_pred HHHHHhcCcchHHHHHHhCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccC Confidence 999999999999999999999988654333322110 1110 000000000000 0 Q ss_pred CCCC Q lcl|Aclame:pro 505 GDGE 508 (508) Q Consensus 505 ~~g~ 508 (508) +.|| T Consensus 519 ~~~~ 522 (537) T protein:vir:78 519 PVAD 522 (537) T ss_pred CCCC Confidence 1111 No 35 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=5.7e-55 Score=317.98 Aligned_cols=459 Identities=12% Similarity=0.082 Sum_probs=299.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcc------ccc-cCCHHHHHHHHHHHHHhcCCCccc-cCccCCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDD------PRI-SIDPDEYVRIQTDLDYYSDKLQYI-HYQASDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~------~~i-~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~~~~~~~~ 72 (508) =+--.-++--|.+..+.-+...+++..+.. .-| ....+...+++++.+||.|+++.+ .........+..+|+ T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki 89 (501) T protein:vir:27 10 TGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFGRRKDREMADKRA 89 (501) T ss_pred cchhhhhhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCccCcccccccee Confidence 000011111222222222222222211110 000 012345678999999999986544 333333334456788 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEE Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDN---NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAW 148 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~---~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~ 148 (508) ++|+|+.||+..++|||++|++++++++ +.++++|++++..|+|...+.++++.|+++|.+|+++|+|+ |++++.+ T Consensus 90 ~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~ 169 (501) T protein:vir:27 90 VHNYGRMISKFKTGYLAGNPIRVEYDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKR 169 (501) T ss_pred ccchHHHHHHHHhhhhcccCeeEecCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEE Confidence 9999999999999999999999998653 44577899999999999999999999999999999999985 7899999 Q ss_pred EcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 149 VRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) ++|.+++|++.+.......+|++.+...+..++ .+++|+|+. +..|+. ..... +..+ T Consensus 170 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~--~~~~~vyt~--~~v~~~-----~~~~~---~~~~----------- 226 (501) T protein:vir:27 170 LNPLETFVIYDNSLEDNSIAAVRYYNRGTLQNA--KDVVEIYTN--EHIYTL-----DASDD---FNEI----------- 226 (501) T ss_pred EccceeEEEecCCCCCceEEEEEEEEeeecCCc--EEEEEEEeC--CeEEEE-----EeCCc---eeec----------- Confidence 999999999544333333444444443333332 345677652 222322 21110 0000 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcC-CCCCCc Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRF-DDEHKP 307 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~-~~~~~~ 307 (508) ....++++++|+++|+ | ++.|+|+|+++++|||+||.++|++++.++.....+++...+... .++... T Consensus 227 --~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~ 295 (501) T protein:vir:27 227 --SVTTHAFGTVPITEFL----N-----NVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQAS 295 (501) T ss_pred --cccccCCCcccEEEec----C-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccchh Confidence 0112455666666654 3 246999999999999999999999999998766666663332211 111111 Q ss_pred cCCcccceEeeec---CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 308 TFDTEQNVYVGVL---SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY 384 (508) Q Consensus 308 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~ 384 (508) .+....-+..... .+...+..++.+++++..++....++.+.+.|...++.+.-+++. .+|..||.+++++.+.+. T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~ 374 (501) T protein:vir:27 296 DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTN-FSGNTSGEALKYKLFGLD 374 (501) T ss_pred hhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccc-cccCchHHHHHHHHHHHH Confidence 1111111111111 112233458889999999999999999999988877765433322 246679999999999999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ 464 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e 464 (508) .++..+++.|+.+|+++++.|+.+.+..+. ........|+|.|++++|.|..+.++.+.++ +|++|.+ T Consensus 375 ~ka~~~~~~~~~~l~~~~~li~~~~~~~~~----------~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl--~g~iS~e 442 (501) T protein:vir:27 375 QDRVDTQSQFTQGLKRRYRLAARIGSLVNE----------FKDFDESLLKITFTPNLPKSLNEQVSILTGL--GGQVSQE 442 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------ccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHH Confidence 999999999999999999999988654321 1122334689999999999999999888876 5999999 Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCccccc--CCCCCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAI--LNGGDGE 508 (508) Q Consensus 465 t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~--~~~~~g~ 508 (508) |+++.+|+++| +++|++||++|+.+......+.+. ..+..+| T Consensus 443 t~l~~l~~v~D--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d 486 (501) T protein:vir:27 443 TALSLSGLVES--PNEELDKINKEVSEIDFKGYSNDFNEHVGKYTD 486 (501) T ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHhhhHhhhcCccccccccccC Confidence 99999999976 778899998886543222111111 0011111 No 36 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=1.5e-54 Score=315.65 Aligned_cols=452 Identities=11% Similarity=0.066 Sum_probs=295.1 Q ss_pred CChHHHHHHHHHHHHHhhh--------hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATG--------VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~ 72 (508) |..+..=+ +....+..| ..+.|.+...+ .-.....++++.++||.|+|+.+..... ..+...|+ T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~i~~----~~~~~~~~~~~l~~Yy~g~~~i~~~~~~--~~~~~~ki 72 (470) T protein:vir:99 1 MKDINYGR--DKVTGNSSFIFPKGEKLTSNELLGFIAY----NETVLKPRYRENMKLYLGKHKILTAPEK--ETGADNRI 72 (470) T ss_pred CccccCCc--ccccCCceEEeCCCCCcCHHHHHHHHHH----HHHhhHHHHHHHHHHhccccccccCccc--ccCCccee Confidence 21111000 000000000 00011111110 0123456788899999999986653322 22345678 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEEEEEcC Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKIAWVRA 151 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i~~v~a 151 (508) ++|||+.||+..|+|||++|+++++.+++..++.|++++.+|+|...+.+++..++++|.+|+++|++ +|++++.+++| T Consensus 73 ~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p 152 (470) T protein:vir:99 73 VVNSAKYVVDVYNGYFCGIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARPHLMYSSP 152 (470) T ss_pred ecchHHHHHHHHhhhhccCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEEEEEcc Confidence 99999999999999999999999997766667889999999999999999999999999999999997 47899999999 Q ss_pred CeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) .+++|++.+..+...+++++.+...+ +....++++.|+ +...|++ ...+ .+....+ . . T Consensus 153 ~~~~~i~d~~~~~~~~~~vr~~~~~~--~~~~~~~~~~~~--~~~~~~~-----~~~~---~~~~~~~---------~-~ 210 (470) T protein:vir:99 153 NHAFIIYDDTVQRQPLAFVHYQIDNS--NNWTDAYGVIQY--ADKFYKF-----KGYD---IEEDTNA---------A-G 210 (470) T ss_pred ceeEEEEcCCCCcceEEEEEEEEEec--CCeeEEEEEEEe--cCeEEEE-----Eecc---ccccccc---------c-c Confidence 99999965554444444444443322 222333334433 1112222 1111 1111100 0 0 Q ss_pred eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee-chHHhcCCCCCCccCC Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV-QPGMLRFDDEHKPTFD 310 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v-~~~~~~~~~~~~~~~~ 310 (508) ...++++++|+++++ | ++.|+|+|+++++|||+||.++|++++.++.....+++ +...+..+..+....+ T Consensus 211 ~~~~~~g~vPvv~~~----n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~~~~~ 281 (470) T protein:vir:99 211 YAINPYGLVPAVEFF----E-----NEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGNPKFD 281 (470) T ss_pred ccccCCCccceEeec----C-----CCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccchhhh Confidence 112345555555443 3 34699999999999999999999999999765555554 3322222233333222 Q ss_pred cccceEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 311 TEQNVYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS 389 (508) Q Consensus 311 ~~~~~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~ 389 (508) ........+.. +.+.++.++.++++++.+.+...++.+.+.|...++.+..+++. .+|..||++++++.+.+..++.. T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Ai~~~~~~l~~k~~~ 360 (470) T protein:vir:99 282 FKNNRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKN-FAGNSSGVALQYKLFAMKNKADS 360 (470) T ss_pred hhhcceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccc-cccCchHHHHHHHHHHHHHHHHH Confidence 22222222222 23344568999999999999999999999999888876544322 24667999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh Q lcl|Aclame:pro 390 YLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR 469 (508) Q Consensus 390 ~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~ 469 (508) +++.|+.+|+++++.|+.+..... .......+|++.|++++|.|..+.++.+.+++ |+||.+|++.. T Consensus 361 ~~~~~~~~l~~~~~li~~~~~~~~-----------~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis~et~l~~ 427 (470) T protein:vir:99 361 KERKFDKSLMQLYRIVLATLFNNK-----------QDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQLGM 427 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-----------CcccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHh Confidence 999999999999999988754321 12223457899999999999999998888774 89999999999 Q ss_pred cCCCCHHHHHHHHHHHHHhccCCC-----CCCcccccCCCCCCC Q lcl|Aclame:pro 470 NYGMTDEQAAEELAKIQSEAPTDT-----FEGGRSAILNGGDGE 508 (508) Q Consensus 470 ~~~~~deea~~e~~ri~~E~~~~~-----~~~~~~~~~~~~~g~ 508 (508) +++++ +++|++||++|+.+.. ..++......+.+|| T Consensus 428 l~~vd---~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~e 468 (470) T protein:vir:99 428 IPDIE---PDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAE 468 (470) T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCcc Confidence 99883 5578888888864321 111112222222222 No 37 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=6.8e-55 Score=317.56 Aligned_cols=446 Identities=16% Similarity=0.155 Sum_probs=292.5 Q ss_pred hHHHHHHHHHHHHHh-----h-h----hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc-CC-----Ccc Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAA-----T-G----VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA-SD-----GIK 66 (508) Q Consensus 3 ~~~~ik~~~~~~~~~-----~-~----~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~-----~~~ 66 (508) |+++|+.=+.+.-.. + + ..+-|++.. .-..+++.++....+||.|+|+.+.... .+ ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-----~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~ 75 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLI-----NNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYT 75 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHH-----HHHHHHHHHHHHHHHHhcccCccccccchhhhccccccc Confidence 333332211100000 0 0 000011111 1122466789999999999997654211 11 122 Q ss_pred ccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeE Q lcl|Aclame:pro 67 KKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIK 145 (508) Q Consensus 67 ~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~ 145 (508) +.+.|+++|||+.||++.|+||||+|+++++++ +.+++.|+.+++ |+|...+.+++..++++|.+|+++|+| +|+++ T Consensus 76 ~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~-~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~ 153 (474) T protein:vir:95 76 KPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDD-DKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGELK 153 (474) T ss_pred ccccccccchHHHHHHhhhhhhcccCceeccCC-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceE Confidence 345678999999999999999999999999865 456788999986 689999999999999999999999997 57899 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +.+++|.++||++.++......+|++.+.. + . . +++|+|+. ..|.+..+.+... ... ......+ T Consensus 154 i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~-~--~-~--~~~~vy~~-----~~i~~~~~~~~~~-~~~----~~~~~~~ 217 (474) T protein:vir:95 154 LFRVPAEQAIPIWTDKEREQLNAFIRIFTF-N--G-E--TKVEYWTA-----ETVTYYVYENGGL-IPD----FYYGDEH 217 (474) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEEEee-c--C-e--eEEEEEeC-----CeEEEEEEcCCce-eec----ccccccc Confidence 999999999999544433334455554432 2 1 1 23455542 2222222221110 000 0000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .......++++..|++.|+ |+ +.|.|+|+++++|||+||.++|++++.++.....+++ +.+.+++. T Consensus 218 --~~~~~~~~~~~~vPvv~~~----nn-----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv---~~g~~~~~ 283 (474) T protein:vir:95 218 --IQTHFSTGSWERVPFIAFK----NN-----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYI---LRGYEGED 283 (474) T ss_pred --ccCcccccCCCccceEEec----CC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh---hcCCCccc Confidence 0111122345555555443 33 4589999999999999999999999999876666666 33444443 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+..+...+..+..++ +.+++.++++++.+++...++.+.+.|...++.+.-++. ..++..||.+++++++.+.. T Consensus 284 ~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Alk~~~~~l~~ 360 (474) T protein:vir:95 284 LSEFMEGLKYYKAINVSS--DGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTD-KFGSATSGIALKFLYTNLNL 360 (474) T ss_pred ccchhhhhhccceeeccC--CCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccc-ccccccHHHHHHHHHHHHHH Confidence 334444444444444443 346899999999999999999999999888875433221 22356789999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et 465 (508) ++..+++.|+.+|+++++.|+.+... .....+|+++|++++|.|..+.++.+. .+|+||.+| T Consensus 361 k~~~~~~~~~~~l~~~~~~i~~~~g~---------------~~d~~~i~i~f~~~~p~~~~e~a~~~~---~~giiS~et 422 (474) T protein:vir:95 361 KANKLKNKANVALQELMQFILDFNKI---------------KLDAKEIEITFNFNVMVNDLEQSQIGA---QSQYLSKET 422 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEecCCCccCHHHHHHHHH---HcCCCChHH Confidence 99999999999999999998876421 123456889999999999887776554 369999999 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCC------CCcccccC--CCCCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTF------EGGRSAIL--NGGDGE 508 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~------~~~~~~~~--~~~~g~ 508 (508) ++..+|+++| +++|++||++|+.+... .++..+.. ++.+++ T Consensus 423 ~~~~lp~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474) T protein:vir:95 423 LVRHHPWVDD--PKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENN 471 (474) T ss_pred HHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCcc Confidence 9999999976 77899999988542211 11111111 111111 No 38 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=6.8e-55 Score=317.56 Aligned_cols=446 Identities=16% Similarity=0.155 Sum_probs=292.5 Q ss_pred hHHHHHHHHHHHHHh-----h-h----hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc-CC-----Ccc Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAA-----T-G----VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA-SD-----GIK 66 (508) Q Consensus 3 ~~~~ik~~~~~~~~~-----~-~----~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~-----~~~ 66 (508) |+++|+.=+.+.-.. + + ..+-|++.. .-..+++.++....+||.|+|+.+.... .+ ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-----~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~ 75 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLI-----NNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYT 75 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHH-----HHHHHHHHHHHHHHHHhcccCccccccchhhhccccccc Confidence 333332211100000 0 0 000011111 1122466789999999999997654211 11 122 Q ss_pred ccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeE Q lcl|Aclame:pro 67 KKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIK 145 (508) Q Consensus 67 ~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~ 145 (508) +.+.|+++|||+.||++.|+||||+|+++++++ +.+++.|+.+++ |+|...+.+++..++++|.+|+++|+| +|+++ T Consensus 76 ~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~-~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~ 153 (474) T protein:vir:96 76 KPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDD-DKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGELK 153 (474) T ss_pred ccccccccchHHHHHHhhhhhhcccCceeccCC-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceE Confidence 345678999999999999999999999999865 456788999986 689999999999999999999999997 57899 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +.+++|.++||++.++......+|++.+.. + . . +++|+|+. ..|.+..+.+... ... ......+ T Consensus 154 i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~-~--~-~--~~~~vy~~-----~~i~~~~~~~~~~-~~~----~~~~~~~ 217 (474) T protein:vir:96 154 LFRVPAEQAIPIWTDKEREQLNAFIRIFTF-N--G-E--TKVEYWTA-----ETVTYYVYENGGL-IPD----FYYGDEH 217 (474) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEEEee-c--C-e--eEEEEEeC-----CeEEEEEEcCCce-eec----ccccccc Confidence 999999999999544433334455554432 2 1 1 23455542 2222222221110 000 0000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~ 305 (508) .......++++..|++.|+ |+ +.|.|+|+++++|||+||.++|++++.++.....+++ +.+.+++. T Consensus 218 --~~~~~~~~~~~~vPvv~~~----nn-----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv---~~g~~~~~ 283 (474) T protein:vir:96 218 --IQTHFSTGSWERVPFIAFK----NN-----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYI---LRGYEGED 283 (474) T ss_pred --ccCcccccCCCccceEEec----CC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh---hcCCCccc Confidence 0111122345555555443 33 4589999999999999999999999999876666666 33444443 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+..+...+..+..++ +.+++.++++++.+++...++.+.+.|...++.+.-++. ..++..||.+++++++.+.. T Consensus 284 ~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Alk~~~~~l~~ 360 (474) T protein:vir:96 284 LSEFMEGLKYYKAINVSS--DGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTD-KFGSATSGIALKFLYTNLNL 360 (474) T ss_pred ccchhhhhhccceeeccC--CCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccc-ccccccHHHHHHHHHHHHHH Confidence 334444444444444443 346899999999999999999999999888875433221 22356789999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et 465 (508) ++..+++.|+.+|+++++.|+.+... .....+|+++|++++|.|..+.++.+. .+|+||.+| T Consensus 361 k~~~~~~~~~~~l~~~~~~i~~~~g~---------------~~d~~~i~i~f~~~~p~~~~e~a~~~~---~~giiS~et 422 (474) T protein:vir:96 361 KANKLKNKANVALQELMQFILDFNKI---------------KLDAKEIEITFNFNVMVNDLEQSQIGA---QSQYLSKET 422 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---------------CcccceeeEEecCCCccCHHHHHHHHH---HcCCCChHH Confidence 99999999999999999998876421 123456889999999999887776554 369999999 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCC------CCcccccC--CCCCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTF------EGGRSAIL--NGGDGE 508 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~------~~~~~~~~--~~~~g~ 508 (508) ++..+|+++| +++|++||++|+.+... .++..+.. ++.+++ T Consensus 423 ~~~~lp~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474) T protein:vir:96 423 LVRHHPWVDD--PKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENN 471 (474) T ss_pred HHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCcc Confidence 9999999976 77899999988542211 11111111 111111 No 39 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=1e-54 Score=316.59 Aligned_cols=443 Identities=16% Similarity=0.187 Sum_probs=291.3 Q ss_pred HHHHHHHHHHhhhhh----------------------hhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-C Q lcl|Aclame:pro 7 IKDLFWKGAAATGVT----------------------GSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-D 63 (508) Q Consensus 7 ik~~~~~~~~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~ 63 (508) +-..+.|+++-|... ..|.+..+ --..++.++..+.+||.|+|+.++.... . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~i~-----~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~ 75 (483) T protein:vir:12 1 MAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIK-----QHLEKLPEISIGQEYYEQRPDIVKEPKPVD 75 (483) T ss_pred CccchhcCCceeecCcchhhhhhhcccccCCchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccccccccccc Confidence 111122222222211 01111111 1123567899999999999987653321 1 Q ss_pred -----CccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 64 -----GIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 64 -----~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ...+.+.|+++|||+.||++.|+|||++|++++++++ ..++.|+++++ |+|...+.+++..|+.+|.+|+++| T Consensus 76 ~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~~d~-~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~y~~v~ 153 (483) T protein:vir:12 76 ATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-EVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPY 153 (483) T ss_pred ccccccccccccccccchHHHHHHHHhhhhcccCceeccCCh-HHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEE Confidence 1223446789999999999999999999999998654 45688999987 5899999999999999999999999 Q ss_pred EeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccc Q lcl|Aclame:pro 139 IDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQV 217 (508) Q Consensus 139 ~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v 217 (508) +|+ |++++.+++|.+++|++.++......+|++.+...+.. ++|+|+ +.+|.+..+.... .+ T Consensus 154 ~d~d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~------~~~~y~-----~~~v~~~~~~~~~------~~ 216 (483) T protein:vir:12 154 LDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET------KVEYWD-----KVTVNYYVYENGS------LI 216 (483) T ss_pred EcCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecce------EEEEEe-----cCeEEEEEEeCCe------ee Confidence 985 78999999999999995443222223333333322211 234443 1222222222110 00 Q ss_pred cccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechH Q lcl|Aclame:pro 218 PLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPG 297 (508) Q Consensus 218 ~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 297 (508) + ...............++++.+|+++|+ | ++.|.|+|+++++|||+||.++|++++.++.....+++ T Consensus 217 ~-~~~~~~~~~~~~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv--- 283 (483) T protein:vir:12 217 P-DYSNNLENSKTHFSTGSWGKIPFIPFK----N-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV--- 283 (483) T ss_pred e-cccccccccccccccCCCCccceEEec----C-----CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceee--- Confidence 0 000000111112223455555565554 3 34689999999999999999999999999865444555 Q ss_pred HhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 298 MLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) +.+.+.+....+..+...+..+..++ +.+++.++++++.+++...++.+.+.|...++.+.-+++ ..++..||.+++ T Consensus 284 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~ 360 (483) T protein:vir:12 284 LTNYDDQELPEFKRLLRYYGAIKVSD--NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVALE 360 (483) T ss_pred eecCCcccchhHHHhhhhccccccCC--CCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccCcHHHHHH Confidence 23333333333333334444444433 345888999999999999999999999888876543332 223567899999 Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLA 457 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~ 457 (508) ++...+..++..+++.|+.+|+++++.|+.+.... ....+++|.|++++|.|..+.++.+.++ T Consensus 361 ~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~---------------~~~~~i~v~f~~~~p~~~~~~a~~~~kl-- 423 (483) T protein:vir:12 361 FLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK---------------GEHKDVDISFNYNKVANTELQVQTAQQS-- 423 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------CccceeeEEeCCCCCCCHHHHHHHHHHH-- Confidence 99999999999999999999999999988764321 1235688999999999999999988887 Q ss_pred CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-cccc------CCCCCCC Q lcl|Aclame:pro 458 IGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-RSAI------LNGGDGE 508 (508) Q Consensus 458 ~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-~~~~------~~~~~g~ 508 (508) +|+||.+|++..+|+++| +++|++||++|+.+.....+ ..+. ..+..|+ T Consensus 424 ~GiiS~et~~~~~~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~ 479 (483) T protein:vir:12 424 MGIVSHETVLENHPFVED--LQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNN 479 (483) T ss_pred hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccccccccCCcccCCCCCc Confidence 599999999999999976 77899999988643221110 0000 1111111 No 40 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=1.2e-54 Score=316.25 Aligned_cols=450 Identities=16% Similarity=0.188 Sum_probs=293.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-C-----Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-D-----GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~-----~~~~~~~~~~~ 74 (508) |.--..+++-+-+.-.. .+.+.+.+. .-|.-..+++.++.++.+||.|+|+.+..... . ...+.+.|+++ T Consensus 5 ~~~~~~~~~~~~~~~~~---~~~~~~~i~-~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~ 80 (472) T protein:vir:93 5 QPTQTEIFDAIVRTNNK---PETLEEMIV-RYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMIT 80 (472) T ss_pred CCcchhhhhceeeecCc---hhhHHHHHH-HHHHHHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc Confidence 33322222211111100 111111110 11112235678899999999999986653221 1 11224457889 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCe Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQ 153 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~ 153 (508) |||+.||+..|+|||++|+++++++ +..++.|+.+++ |+|...+.+++..|+++|.+|+.+|.|+ |++++.+++|.+ T Consensus 81 n~~~~ivd~~~~~l~g~~~~~~~~d-~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~ 158 (472) T protein:vir:93 81 NFHANLVDQKVSYIVGKPIAFKHTD-DEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQ 158 (472) T ss_pred chHHHHHHHHhhhhcccCeeeccCC-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccc Confidence 9999999999999999999999865 446788999986 6899999999999999999999999985 789999999999 Q ss_pred EEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 154 FYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) ++|++.++......+|++.+...+.. .+|+|+ .+.+.+..+.... .+.. ..... ........ T Consensus 159 ~~~i~d~~~~~~~~~~ir~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~--~~~~---~~~~~--~~~~~~~~ 220 (472) T protein:vir:93 159 GIPIWTDKEHEELEAFIRMYKLENET------KVEYWD-----KVTVNYYVYENGS--LIPD---YSNNL--ENSKTHFS 220 (472) T ss_pred eEEEEcCCCCCceEEEEEEEEeecce------eEEEEe-----cCeEEEEEEecCe--eeec---ccccc--cccccccc Confidence 99995443222233444443332221 123332 1111111111110 0000 00000 01112223 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCccc Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQ 313 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 313 (508) .++++.+|+++|++ ++.|+|+|+++++|||+||.++|++++.++.....+++ +.+.++.....+..+. T Consensus 221 ~~~~~~vPvv~~~n---------n~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~ 288 (472) T protein:vir:93 221 TGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV---LTNYDDQELPEFKRLL 288 (472) T ss_pred cCCCCCcceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeE---eecCCcccchhhHHHH Confidence 35667777766643 24699999999999999999999999999865555555 2333333333333333 Q ss_pred ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 314 ~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~ 393 (508) ..+..+..+++ .++++++++++.+++...++.+.+.|...++.+.-+++. .++..||.+++++++.+..++..+++. T Consensus 289 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~ka~~~~~~ 365 (472) T protein:vir:93 289 RYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDK-FGSAPSGVALEFLYTNLNLKADKLARK 365 (472) T ss_pred hhccccccCCC--CcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccc-cccCchHHHHHHHHHHHHHHHHHHHHH Confidence 34444444332 358888999999999999999999998888765444322 335678999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCC Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGM 473 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~ 473 (508) |+.+|+++++.|+.+... ......|+|+|++++|.|..+.++.+.++ +|++|.+|++..+|++ T Consensus 366 ~~~~l~~~~~li~~~~~~---------------~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~ 428 (472) T protein:vir:93 366 AKVAIQELLWFVFEHFDI---------------KGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV 428 (472) T ss_pred HHHHHHHHHHHHHHHhCC---------------CcccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCC Confidence 999999999998876431 11234688999999999999999988876 5999999999999999 Q ss_pred CHHHHHHHHHHHHHhccCCCCCC---cccccCCCCCCC Q lcl|Aclame:pro 474 TDEQAAEELAKIQSEAPTDTFEG---GRSAILNGGDGE 508 (508) Q Consensus 474 ~deea~~e~~ri~~E~~~~~~~~---~~~~~~~~~~g~ 508 (508) +| +++|++||++|+.+..... ...+..++..+| T Consensus 429 ~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~ 464 (472) T protein:vir:93 429 ED--LQAELERIEQEQMEYNKQLPNLDDGGADGAQQQE 464 (472) T ss_pred CC--HHHHHHHHHHHHHHHHHhccCcCcccCCCCCCCC Confidence 76 7789999988853321111 111111111111 No 41 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=1.6e-54 Score=315.46 Aligned_cols=437 Identities=13% Similarity=0.091 Sum_probs=293.5 Q ss_pred CChHHHHHHHHHHHHHhhhhh------hhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVT------GSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~ 74 (508) |. +.+.....+.. .-|.+...+ -.....++.++++||+|+|+++.... ....+..+|+++ T Consensus 1 ~~--------~~~~~~~~~p~d~~~~~~~l~~~i~~-----~~~~~~r~~~~~~yy~g~~~i~~~~~-~~~~~~~~ki~~ 66 (453) T protein:vir:39 1 MK--------YKPPKLMTFPKDEPITNEVVTKFMEK-----HRLEVARYEYLKNMYRGIMAIDAEPT-KDLWKPDNRLTV 66 (453) T ss_pred Ce--------ecCCcceEcCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCchhcCCC-ccccCccceeec Confidence 11 11111111100 011111110 01245678899999999998765443 233345567889 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCe Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQ 153 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~ 153 (508) |||+.||+++|+|||++|+++++++ +..++.|++++.+|+|...+.++++.|+++|.+|+++|.|+ |.+++.+++|.+ T Consensus 67 n~~~~ivd~~~~~l~g~~~~~~~~d-~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~ 145 (453) T protein:vir:39 67 NFTKYIVDTFTGYFNGIPVKKSHSD-KETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPEN 145 (453) T ss_pred chHHHHHHHHhhhhcccCceeccCC-hHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccc Confidence 9999999999999999999999865 45678999999999999999999999999999999999985 789999999999 Q ss_pred EEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 154 FYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) ++|++.+.... +.+++.+++..+ ...+++|+|+ + .+|.+ |...... +... +.. T Consensus 146 ~~~v~d~~~~~-~~~~~ir~~~~~----~~~~~~~~yt--~---~~i~~--~~~~~~~-------~~~~--------~~~ 198 (453) T protein:vir:39 146 MFMVYDDTIKQ-EPLFAVRYGYDD----DYKLYGEVYT--K---ETTYA--LNGTMGF-------YNMT--------EQA 198 (453) T ss_pred eEEEecCCCCC-eEEEEEEEEEeC----CeEEEEEEEe--C---CeEEE--EEecCCc-------eeee--------ccc Confidence 99985443333 344444444322 1334567765 2 22221 2221110 0000 011 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeechHHhcCCCCCCccCCcc Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQPGMLRFDDEHKPTFDTE 312 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~~~~~~~~~~~~~~~ 312 (508) -++++..|+++|+ | ++.|+|+|+.+++|||+||.++|++++.++. +.+..++... ..+++....+..+ T Consensus 199 ~~~~g~vPvv~~~----n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~--~~~~~~~~~~~~~ 267 (453) T protein:vir:39 199 PNPFDDLPVVEFY----F-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGA--AVEEEDLKNIRSN 267 (453) T ss_pred ccCCCceeEEEec----C-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecC--CCCchhhhhhhhc Confidence 2455555555543 3 2458999999999999999999999999965 4444444221 1112222222222 Q ss_pred cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 313 QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 313 ~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) .-.......+.+.+..++.++++++.+++...++.+.+.|+..++... +++...|..||.+++++.+.+..+++.+++ T Consensus 268 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~ 345 (453) T protein:vir:39 268 RVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--ISDESFGSSSGVSLAYKLQAMSNLALSFQR 345 (453) T ss_pred ceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc--cccccccCChHHHHHHHHHHHHHHHHHHHH Confidence 222221122223345689999999999999999999999988886543 444445677999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCC Q lcl|Aclame:pro 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYG 472 (508) Q Consensus 393 ~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~ 472 (508) .|+.+|+++++.|+.+....+. ......|+|.|+++++.|..+.++.+.++ +|+||.+|++..+|+ T Consensus 346 ~~~~~l~~~~~li~~~~~~~~~------------~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~l~~l~~ 411 (453) T protein:vir:39 346 KFQSSLNSRYKLYCELSTNVSN------------KEAWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISV 411 (453) T ss_pred HHHHHHHHHHHHHHHHHhccCC------------ccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC Confidence 9999999999999988653321 12234688999999999999999888876 699999999999999 Q ss_pred CCHHHHHHHHHHHHHhccCCCCC-----Ccccc--cCCCCCCC Q lcl|Aclame:pro 473 MTDEQAAEELAKIQSEAPTDTFE-----GGRSA--ILNGGDGE 508 (508) Q Consensus 473 ~~deea~~e~~ri~~E~~~~~~~-----~~~~~--~~~~~~g~ 508 (508) ++| +++|++||++|+.+.... .+..+ ...+.+++ T Consensus 412 v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (453) T protein:vir:39 412 IPD--VQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPETNE 452 (453) T ss_pred CCC--HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcCC Confidence 976 778899999987643211 11111 11111111 No 42 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=3.7e-54 Score=313.49 Aligned_cols=425 Identities=13% Similarity=0.071 Sum_probs=291.5 Q ss_pred CChH----------HHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccc Q lcl|Aclame:pro 1 MGLI----------QRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRL 70 (508) Q Consensus 1 m~~~----------~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 70 (508) -|+| +.|.+++.+ -..+..++....+||.|+|+.+..... ...+..+ T Consensus 6 ~~~~~~~~~~~~~~~~i~~~i~~----------------------~~~~~~r~~~~~~Yy~g~~~i~~~~~~-~~~~~~~ 62 (452) T protein:vir:36 6 PKLMTFSKDEPITVEVVTKFMEK----------------------HKLEVARYEYLKNMYLGIMAIDDEPAK-DSWKPDN 62 (452) T ss_pred ceeEEcCCccCCCHHHHHHHHHH----------------------HHHHHHHHHHHHHHhccccccccCccc-cccCccc Confidence 1111 223332211 112456788899999999987664433 3334566 Q ss_pred ccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWV 149 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v 149 (508) |+++|||+.||++.|+|||++|+++++++ +..++.|++++++|+|...+.++++.|+++|.+|+++|+|+ |++++.++ T Consensus 63 ki~~n~~~~ivd~~~~~l~g~~~~~~~~d-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~ 141 (452) T protein:vir:36 63 RLAVNFTKYIVDTFTGYFNGIPVKKSHSD-KEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYN 141 (452) T ss_pred eeecchHHHHHHHHhhhhcccCceeecCC-hhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEE Confidence 78999999999999999999999999864 55688999999999999999999999999999999999984 89999999 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|.+++|++.+.......++++ ++... . ++ .++|+|+ +...|+. ...+. |..+ T Consensus 142 ~p~~~~~v~d~~~~~~~~~~i~-~~~~~-~-~~--~~~~vyt--~~~i~~~-----~~~~~---~~~~------------ 194 (452) T protein:vir:36 142 SPENMFMVYDDTVKQEPLFAVR-YGVDE-D-KK--LQGEVYT--LLETIKI-----SGEND---EISF------------ 194 (452) T ss_pred cccceEEEEcCCCCCceEEEEE-EEEec-C-ce--EEEEEEe--cCeEEEE-----EEcCC---ceEE------------ Confidence 9999999954443332333333 33221 1 12 2345554 2112221 11111 0000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTF 309 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~ 309 (508) .....++++++|+++++ |+ +.|+|+|.++++|||+||.++|++++.++.....+++. .+.+.... . T Consensus 195 ~~~~~~~~g~iPvv~~~----n~-----~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~---~g~~~~~~--~ 260 (452) T protein:vir:36 195 GEGTYNPYPDLPVVEFY----FN-----EERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTF---LGAAVEEE--D 260 (452) T ss_pred ecceeccCCcccEEEec----CC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEe---ecCCcCch--h Confidence 00112345555555553 32 35899999999999999999999999997555455542 22221111 1 Q ss_pred CcccceEe--eecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 310 DTEQNVYV--GVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 310 ~~~~~~~~--~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ..+...+. .+.. +...++.+++++++++.+++...++.+.+.|...++.+. +++...|..||++++++.+.+..+ T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~l~~k 338 (452) T protein:vir:36 261 LKNIRSNRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--ISDESFGSSSGVSLAYKLQAMSNL 338 (452) T ss_pred hhhhhhcceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccc--cCcccccCCcHHHHHHHHHHHHHH Confidence 11111111 1222 233445688999999999999999999999988887653 455555778999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +..+++.|+.+|+++++.|+.+....+ ......+|+|.|++++|.|..+.++.++++ +|+||.+|+ T Consensus 339 ~~~~~~~~~~~l~~~~~li~~~~~~~~------------~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~ 404 (452) T protein:vir:36 339 ALSFQRKFQSSLNSRYKLFCELSTNVS------------NKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETA 404 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC------------CccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHH Confidence 999999999999999999998865422 111234688999999999999999888776 699999999 Q ss_pred HHhcCCCCHHHHHHHHHHHHHhccCC-----CCCCcccccCCCCCCC Q lcl|Aclame:pro 467 LQRNYGMTDEQAAEELAKIQSEAPTD-----TFEGGRSAILNGGDGE 508 (508) Q Consensus 467 l~~~~~~~deea~~e~~ri~~E~~~~-----~~~~~~~~~~~~~~g~ 508 (508) +..+|+++| +++|++||++|+++. +..++..+..++.+.+ T Consensus 405 ~~~~~~~~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (452) T protein:vir:36 405 LSVISVIPD--VQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSET 449 (452) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccc Confidence 999999876 778999999887542 1111211111111111 No 43 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=2e-54 Score=315.03 Aligned_cols=454 Identities=17% Similarity=0.197 Sum_probs=300.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhh-----hhHHhh----c--------cccccCCHHHHHHHHHHHHHhcCCCccccCccC- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTG-----SLSKIT----D--------DPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS- 62 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~-----~~~~~~----~--------~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~- 62 (508) .-+|..+-..+.|+++-|.... .++.+. + ..-|.--.+++.++..+.+||.|+|+.+..... T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~~~~ 83 (492) T protein:vir:94 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 83 (492) T ss_pred HHHHHHHHHHHhcCCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc Confidence 7777776666667766654221 110000 0 000111224567899999999999986653321 Q ss_pred CC-----ccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 63 DG-----IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 63 ~~-----~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~ 137 (508) .+ ..+.+.|+++|||+.||++.|+|+|++|+++++++ +..++.|+.+++ |+|...+.+++..|+.+|.+|+.+ T Consensus 84 ~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~d-~~~~~~l~~~~~-n~~~~~~~~~~~~a~~~G~a~~~v 161 (492) T protein:vir:94 84 DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTD-DEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHP 161 (492) T ss_pred cccccccccccccccccchHHHHHHHHHhhhcccCceeccCc-hHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEE Confidence 11 12344578899999999999999999999999865 446788999986 689999999999999999999999 Q ss_pred EEeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcc Q lcl|Aclame:pro 138 YIDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQ 216 (508) Q Consensus 138 ~~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~ 216 (508) |.|+ |++++.+++|.+++|++.++....-.++++.+...+.. ++|+|+. ..|.+..+.. ...+. T Consensus 162 ~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~------~~~~y~~-----~~v~~~~~~~--~~~~~-- 226 (492) T protein:vir:94 162 YLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET------KVEYWDK-----VTVNYYVYEN--GSLIP-- 226 (492) T ss_pred EecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccce------eEEEEec-----CeEEEEEEec--Ceeee-- Confidence 9984 88999999999999995433322233444444332221 2344331 1111111111 00000 Q ss_pred ccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 217 VPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQP 296 (508) Q Consensus 217 v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~ 296 (508) ...... .........++++.+|+++|+ |+ +.|+|+|+++++|||+||.++|++++.++.....+++ T Consensus 227 -~~~~~~--~~~~~~~~~~~~g~vPvv~~~----nn-----~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv-- 292 (492) T protein:vir:94 227 -DYSNNL--ENSKTHFSTGSWGKIPFIPFK----NN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV-- 292 (492) T ss_pred -cccccc--ccccccccccCCCccceEEec----CC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceee-- Confidence 000000 011112223455555555553 32 3589999999999999999999999999865555665 Q ss_pred HHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 297 GMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) +.+.+++....+..+...+..+..+++ .+++.++++++.++....++.+.+.|...++.+.-+++ ..++..||.++ T Consensus 293 -~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al 368 (492) T protein:vir:94 293 -LKNYDDQELPEFKRLLRYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVAL 368 (492) T ss_pred -eecCCcccchhhHHHHhhccceecCCC--CcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCcc-ccccCchHHHH Confidence 233344433334444444444444432 35888899999999999999998888877765432222 12356789999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) +++.+.+..++..+++.|+.+|+++++.|+.+.... ....+|.|+|++++|.|..+.++.+.+++ T Consensus 369 ~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~---------------~~~~~i~v~f~~~~p~~~~e~~~~~~kl~ 433 (492) T protein:vir:94 369 EFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK---------------GEHKDVDISFNYNKVANTELQVQTAQQSM 433 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------cccceeeEEecCCCCCCHHHHHHHHHHHh Confidence 999999999999999999999999999988764321 12346889999999999999998888774 Q ss_pred hCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-------ccccCCCCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-------RSAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-------~~~~~~~~~g~ 508 (508) |++|.+|++..+|++++ +++|++||++|+.+.....+ ..+...+..++ T Consensus 434 --giiS~et~~~~l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) T protein:vir:94 434 --GIVSHETVLENHPFVED--LQAELERIEQEQMEYNKQLPNLDDGGADSAQQQERSNN 488 (492) T ss_pred --ccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCccccCCcc Confidence 99999999999999976 77899999887543221111 11111111111 No 44 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=1e-54 Score=316.53 Aligned_cols=427 Identities=10% Similarity=0.051 Sum_probs=296.7 Q ss_pred HhhccccccCCHHHHHHHHHHHHHhcCCCccccCc-cCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCc--HH Q lcl|Aclame:pro 26 KITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQ-ASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDN--NE 102 (508) Q Consensus 26 ~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~--~~ 102 (508) =+. ....++..++.+..+||.|+|+.+..+ ......+..+|+++|||+.||++.|+|||++|+++++.+. +. T Consensus 1 ~~~-----~~~~~~~~r~~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~~~ 75 (440) T protein:vir:95 1 MLA-----AFLGSQKQRLAILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGGSAD 75 (440) T ss_pred Chh-----hHHHHHHHHHHHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhheeccCceEeeCCCccHH Confidence 011 112346778999999999999865332 2223334556789999999999999999999999987653 34 Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCc Q lcl|Aclame:pro 103 ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQT 181 (508) Q Consensus 103 ~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~ 181 (508) ..+.|++++.+|+|...+.++++.|+++|.+|+++|+|+ |++++.+++|.+++|++.+.......++++.+...+ . T Consensus 76 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~---~ 152 (440) T protein:vir:95 76 QLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPIYAD---K 152 (440) T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecC---c Confidence 456899999999999999999999999999999999975 789999999999999854444333334443333221 1 Q ss_pred EEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCc Q lcl|Aclame:pro 182 KYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGL 261 (508) Q Consensus 182 ~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~ 261 (508) . +.+.|+ +.+ .+.+........ +.. ......++++..|+++|+ |+ ..|+ T Consensus 153 -~--~~~vyt--~~~--~~~~~~~~~~~~---~~~------------~~~~~~~~~g~vPvv~~~----n~-----~~g~ 201 (440) T protein:vir:95 153 -V--NMTVYT--KDK--VITYKPYSNNSV---RLV------------VDDVKKHSYNDVPVVEWW----NN-----RFRM 201 (440) T ss_pred -e--EEEEEe--CCe--EEEEEEecCCcc---cee------------ecceeeccCceeeEEEee----CC-----CCCC Confidence 1 224433 222 222222221110 000 011122455555565554 33 3589 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH---hcCCCCCCccCCcccceEeeecCC---CCCCCcceEeecc Q lcl|Aclame:pro 262 GVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM---LRFDDEHKPTFDTEQNVYVGVLSD---DNNGLGVKDMTTP 335 (508) Q Consensus 262 S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~d 335 (508) |+|+.+++|||+||.++|++++.++.....+++.... ...+++....+......+.....+ .+.+..++.++++ T Consensus 202 sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 281 (440) T protein:vir:95 202 GDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQ 281 (440) T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeec Confidence 9999999999999999999999998665655553322 112333333333333333322211 1233458999999 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc Q lcl|Aclame:pro 336 IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALF 415 (508) Q Consensus 336 ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~ 415 (508) ++.+++...++.+.+.|...++.+.-+++.- +++.||.+++++++.+..++..++..|+.+|.++++.|+.+.+... T Consensus 282 ~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~-- 358 (440) T protein:vir:95 282 YDVNGTEAYKNRLANDIHRFSRIPNLDDDRF-NSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAIN-- 358 (440) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-- Confidence 9999999999999999999988765444322 3567999999999999999999999999999999999988865422 Q ss_pred cccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC Q lcl|Aclame:pro 416 DDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE 495 (508) Q Consensus 416 ~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~ 495 (508) ........++|.|++++|.|..+.++++.++ +|+||.+|++.++|++++ .+|++||++|+..+..+ T Consensus 359 ---------~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l~~~d~---~~E~~ri~~E~~~~~~~ 424 (440) T protein:vir:95 359 ---------GPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENASFTDY---KTEHSRILKQGGSSDLE 424 (440) T ss_pred ---------CcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCc---HHHHHHHHHHHHHhhhh Confidence 1122345689999999999999999988876 589999999999999864 35788888888766555 Q ss_pred Cccccc-CCCCCCC Q lcl|Aclame:pro 496 GGRSAI-LNGGDGE 508 (508) Q Consensus 496 ~~~~~~-~~~~~g~ 508 (508) .....+ .+++.+| T Consensus 425 ~~~~~~~~~~~~~~ 438 (440) T protein:vir:95 425 IGQIVGDADVGQAD 438 (440) T ss_pred HHhhccCCCCCCcC Confidence 443333 3333333 No 45 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=2.7e-54 Score=314.28 Aligned_cols=454 Identities=17% Similarity=0.210 Sum_probs=302.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhh-hhHHhhc-----ccc-----------ccCCHHHHHHHHHHHHHhcCCCccccCcc-C Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTG-SLSKITD-----DPR-----------ISIDPDEYVRIQTDLDYYSDKLQYIHYQA-S 62 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~-~~~~~~~-----~~~-----------i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~ 62 (508) .-+|..+-..+.|+++-|.... +...... ..+ |.--.+++.++..+.+||.|+|+.+.... . T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~ 83 (492) T protein:vir:97 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 83 (492) T ss_pred HHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccc Confidence 7777776666667666654321 1000100 000 11112456788889999999998665322 1 Q ss_pred C-----CccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 63 D-----GIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 63 ~-----~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~ 137 (508) . ...+.+.|+++|||+.||+..|+|||++|++++++++ ..++.|+++++ |+|...+.+++..|+.+|.+|+.+ T Consensus 84 ~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~d~-~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~a~~~v 161 (492) T protein:vir:97 84 DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-EVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHP 161 (492) T ss_pred cccccccccccccccccchHHHHHHHHhhhhcccCceeccCch-HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCeEEEEE Confidence 1 1223456788999999999999999999999998654 46788999986 689999999999999999999999 Q ss_pred EEeC-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcc Q lcl|Aclame:pro 138 YIDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQ 216 (508) Q Consensus 138 ~~d~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~ 216 (508) |.|+ |++++.+++|.+++|++.++......+|++.+...+. +++|+|+ .++|.+..+.... .+.. T Consensus 162 ~~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~------~~~~~y~-----~~~v~~~~~~~~~--~~~~- 227 (492) T protein:vir:97 162 YLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE------TKVEYWD-----KVTVNYYVYENGS--LIPD- 227 (492) T ss_pred EecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccc------eeEEEEe-----cCeEEEEEEecCe--eeec- Confidence 9984 7899999999999999544333333444444433221 1234443 1222222222111 0000 Q ss_pred ccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 217 VPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQP 296 (508) Q Consensus 217 v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~ 296 (508) ..... .........++++.+|+++|+ | ++.|+|+|+.+++|||+||.++|++++.++.....+++. T Consensus 228 --~~~~~--~~~~~~~~~~~~g~vPvv~~~----n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~- 293 (492) T protein:vir:97 228 --YSNNL--ENSKTHFSTGSWGKIPFIPFK----N-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL- 293 (492) T ss_pred --ccccc--cccccccccCCCCCcceEEec----C-----CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeee- Confidence 00000 111122233456666666554 3 235899999999999999999999999998766666662 Q ss_pred HHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 297 GMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) .+.+++....+..+...+..+..+++ .+++.++++++.+++...++.+.+.|...++.+.-+++ ..++..||.++ T Consensus 294 --~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~-~~~~n~Sg~Al 368 (492) T protein:vir:97 294 --KNYDDQELPEFKRLLRYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVAL 368 (492) T ss_pred --ecCCcccchhHHHHHhhccceecCCC--CcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccCcHHHHH Confidence 33333333333333333444444432 35788899999999999999999988887765433322 22356789999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) +++++.+..++..+++.|+.+|+++++.|+.+.... ....+++|+|++++|.|..+.++.+.++ T Consensus 369 ~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~---------------~~~~~i~v~f~~~~p~~~~e~a~~~~kl- 432 (492) T protein:vir:97 369 EFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK---------------GEHKDVDISFNYNKVANTELQVQTAQQS- 432 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------cccceeeEEecCCCCCCHHHHHHHHHHH- Confidence 999999999999999999999999999988765321 1235688999999999999999988887 Q ss_pred hCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcc---cccCCCCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGR---SAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~---~~~~~~~~g~ 508 (508) +|+||.+|++..+|++++ +++|++||++|+......... .+..++..++ T Consensus 433 -~G~iS~et~l~~l~~v~d--~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) T protein:vir:97 433 -MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) T ss_pred -hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc Confidence 599999999999999977 678899998876422111110 1111111111 No 46 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=2.2e-54 Score=314.75 Aligned_cols=428 Identities=17% Similarity=0.152 Sum_probs=296.5 Q ss_pred hhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC------CCccccccccccchHHHHHHHHHHhhhcCc Q lcl|Aclame:pro 19 GVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS------DGIKKKRLKNTINMAKTAARRIASVVFNEK 92 (508) Q Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~------~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~ 92 (508) -....|.+..++ -.++..++...++||.|+|+.+..... ....+...|+++||++.||++.|+||||+| T Consensus 1 l~~~~i~~~i~~-----~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p 75 (451) T protein:vir:10 1 MELEKIRAIISA-----DAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYP 75 (451) T ss_pred CCHHHHHHHHHH-----HHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheeccc Confidence 112222222221 124678899999999999986653211 112234458889999999999999999999 Q ss_pred ceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC---------CeeEEEEEcCCeEEEEEEcCCC Q lcl|Aclame:pro 93 AEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG---------NHIKIAWVRADQFYPLQSNTND 163 (508) Q Consensus 93 ~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~---------~~~~i~~v~a~~~~Pi~~d~~~ 163 (508) +++++++++..++.|+.+++ |+|...+.++++.++.+|.+|.++|+|. +.+++..++|.++||++.++.. T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~ 154 (451) T protein:vir:10 76 VLFDIDNNKELNEKVTDVLG-NEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIE 154 (451) T ss_pred ceeecCCcHHHHHHHHHHhc-cCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCC Confidence 99999888877888888776 7899999999999999999999999984 6788999999999999655433 Q ss_pred eEEEEEEEEEEEeecCC----cEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCc Q lcl|Aclame:pro 164 ISEAAIASRTQRTESNQ----TKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQR 239 (508) Q Consensus 164 ~~~~~f~~~~~~~~~~~----~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~ 239 (508) ....+|++.+...+... ++.++++|+|+.. ..+ . |+..+....|..+. .....+++++ T Consensus 155 ~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~--~~~--~---~~~~~~~~~~~~~~-----------~~~~~~~~g~ 216 (451) T protein:vir:10 155 RELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDK--ILD--K---YKFFGVSCCGSQIE-----------HITVQHRFNS 216 (451) T ss_pred CceEEEEEEEEeeecccccccceEEEEEEEEeCC--eEE--E---EEecccCccccccc-----------cccccCCCCe Confidence 33344444443332222 3456677776522 111 1 22222221122111 1111246666 Q ss_pred ceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcccc---eE Q lcl|Aclame:pro 240 PLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQN---VY 316 (508) Q Consensus 240 ~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~---~~ 316 (508) .|+++|+ ||. .|.|+|+++++|||+||.+.|++++.++.....+++ +.+.+++....+..+.. +. T Consensus 217 vPvv~~~----nn~-----~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~~~~~~i 284 (451) T protein:vir:10 217 VPFVEFS----NNI-----KKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYI---LENFGGEDTSEFLKELKRYKTI 284 (451) T ss_pred eeEEEec----cCC-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceee---eecCCcccchhhHHHHhhCCeE Confidence 6666554 333 488999999999999999999999999765555555 22223222222222221 22 Q ss_pred eeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 317 VGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 317 ~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) .....++..++.++.++++++.+++...++.+.+.|...++.+. +++...|..||.+++++++.+.+++..+++.|+. T Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~ 362 (451) T protein:vir:10 285 KTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQ--QDTENFGNASGVALKFFYRKLELKSGLLETEFRT 362 (451) T ss_pred EecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222233456799999999999999999999999988887553 4444556789999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHH Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDE 476 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~de 476 (508) +|+++++.|+.+.+.. +...|++.|++++|.|..+.++.+.+++ |+||.+|+++.+|++++ T Consensus 363 ~l~~~~~li~~~~~~~----------------d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d- 423 (451) T protein:vir:10 363 SFDKLIKAILYFLGVT----------------DYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDD- 423 (451) T ss_pred HHHHHHHHHHHHhCCC----------------CccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCC- Confidence 9999999998875321 2346889999999999999998888874 89999999999999987 Q ss_pred HHHHHHHHHHHhccCCCC-CCcccccCCC Q lcl|Aclame:pro 477 QAAEELAKIQSEAPTDTF-EGGRSAILNG 504 (508) Q Consensus 477 ea~~e~~ri~~E~~~~~~-~~~~~~~~~~ 504 (508) +++|++++++|+.+... ..+..+.+++ T Consensus 424 -~~~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 424 -VEEAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 56777777666543211 1222222333 No 47 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=1.3e-53 Score=310.58 Aligned_cols=424 Identities=10% Similarity=0.045 Sum_probs=293.6 Q ss_pred HHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHH Q lcl|Aclame:pro 6 RIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIA 85 (508) Q Consensus 6 ~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A 85 (508) =.++++ .+..++. . .+..++...++||.|+|+.+...... ..+..+|+++|||+.||+..| T Consensus 1 l~~~~l-------------~~~i~~~----~-~~~~r~~~l~~yy~g~~~il~~~~~~-~~~~~~ki~~n~~~~ivd~~~ 61 (429) T protein:vir:98 1 MTKDLL-------------SELIQKH----R-SFNLSYSAYKQLYEGDHAILQQKQKE-QYKPDNRLVVNFAKYIVDTFN 61 (429) T ss_pred CCHHHH-------------HHHHHHH----H-HHHHHHHHHHHHhccccccccccccc-cCCCcceeecchHHHHHHHHh Confidence 011222 2222111 1 34578888999999999877644432 334567889999999999999 Q ss_pred HhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEEcCCCe Q lcl|Aclame:pro 86 SVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQSNTNDI 164 (508) Q Consensus 86 ~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~d~~~~ 164 (508) +|||++|+++++++ +..++.|+++++.|+|...+.+++..++++|.+|+.+|.|+ |++++.+++|.+++|++.+..+. T Consensus 62 ~~l~g~~~~~~~~~-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~ 140 (429) T protein:vir:98 62 GYFIGVPVQTSHEN-KQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQ 140 (429) T ss_pred hhhcccCceeecCC-hHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCC Confidence 99999999999854 55678999999999999999999999999999999999975 78999999999999996665544 Q ss_pred EEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEE Q lcl|Aclame:pro 165 SEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAY 244 (508) Q Consensus 165 ~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~ 244 (508) ...++++.+. .. ++. ++.++++ .. . + ..|..... |..+ .. ..-+++++.|+++ T Consensus 141 ~~~~~i~~~~-~~--~~~--~~~~~~~--~~-~--~--~~~~~~~~---~~~~-----------~~-~~~~~~g~vPvv~ 193 (429) T protein:vir:98 141 KPLFAVRYFY-NK--GGV--LEGSYSD--AS-N--I--TYFKDGEK---GIEI-----------GE-SEPHPFDGVPMIE 193 (429) T ss_pred ceEEEEEEEE-ec--Cce--EEEEEEe--Cc-e--E--EEEEecCC---ceEe-----------cc-cccccCCccceEE Confidence 3444443332 21 111 2233332 11 1 1 11221111 1110 00 0123455555555 Q ss_pred ecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcccceEeeecC--C Q lcl|Aclame:pro 245 FKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLS--D 322 (508) Q Consensus 245 ~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 322 (508) |+ | ++.|.|+|.++++++|+||.++|++++.++.....+++ +.+.+.+. .+..+...+..+.. + T Consensus 194 ~~----n-----~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~---i~g~~~~~--~~~~~~~~~~~~~~~~~ 259 (429) T protein:vir:98 194 YV----E-----NEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLK---ILGAELDD--ETLKSLRDTRIINLKDT 259 (429) T ss_pred ec----C-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCCCc--chhhhHhhCceeeccCC Confidence 43 3 34699999999999999999999999999866555555 22222222 22222222333333 2 Q ss_pred CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELC 402 (508) Q Consensus 323 ~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li 402 (508) ++.+..++.++++++.+++...++.+.+.|...++.+. +++...|..||.+++++.+.+..++..+++.|+.+|++++ T Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~ 337 (429) T protein:vir:98 260 DAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVAN--ISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRY 337 (429) T ss_pred CCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccc--cCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23334578899999999999999999999988887643 4555556789999999999999999999999999999999 Q ss_pred HHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHH Q lcl|Aclame:pro 403 QSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEEL 482 (508) Q Consensus 403 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~ 482 (508) +.|+.+.+..+ ...+...|+|.|++.+|.|..+.++.++++ +|+||.||++..+|+++| +++|+ T Consensus 338 ~li~~~~~~~~------------~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d--~~~E~ 401 (429) T protein:vir:98 338 KLIASYPTSKI------------GPKDWIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVLSIVEN--PQKEI 401 (429) T ss_pred HHHHHHhccCC------------CccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCC--HHHHH Confidence 99998754321 112234588999999999999999988886 699999999999999987 67889 Q ss_pred HHHHHhccCCCC--CCcccccCCCCCCC Q lcl|Aclame:pro 483 AKIQSEAPTDTF--EGGRSAILNGGDGE 508 (508) Q Consensus 483 ~ri~~E~~~~~~--~~~~~~~~~~~~g~ 508 (508) +||++|+.+... ..+..+..+..|-| T Consensus 402 ~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 402 ERKNSDKSTLISRQAGGLNGQNTTTILE 429 (429) T ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCC Confidence 999999765321 11111112222222 No 48 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=5.6e-53 Score=307.04 Aligned_cols=447 Identities=13% Similarity=0.063 Sum_probs=299.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc----------------CCC Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA----------------SDG 64 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~----------------~~~ 64 (508) |.|.+-|...= ..-...+-|++..++ -.....++....+||.|.++...... ... T Consensus 1 ~~~~~~~~~~~----~~~~~~e~i~~~i~~-----~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (474) T protein:vir:10 1 MTLYKLIDDIE----AQGILPKHIEALIES-----HKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRL 71 (474) T ss_pred CchHHHHhhcc----ccCCCHHHHHHHHHH-----hhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhccccccc Confidence 77666443320 000011222332221 11245677888899988765321110 011 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCC----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKD----NNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~----~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) ..+..+|+++|||+.||++.|+||||+|+++++++ ++.++++|++++++|+|...+.+++..|+++|.+|.++|.| T Consensus 72 ~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d 151 (474) T protein:vir:10 72 DVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYID 151 (474) T ss_pred ccCcccccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeC Confidence 12244578999999999999999999999999854 44567889999999999999999999999999999999998 Q ss_pred C-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccc Q lcl|Aclame:pro 141 G-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPL 219 (508) Q Consensus 141 ~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l 219 (508) + |++++.+++|.+++|++.+.++... +++.+...+..+++.+.++++|+ +... ..|++.+.+ .. T Consensus 152 ~~~~~~~~~i~p~~~~~v~d~~~~~~~--~i~~~~~~~~~~~~~~~~~~~y~--~~~~-----~~~~~~~~~---~~--- 216 (474) T protein:vir:10 152 TNGDIRIKNIDPYNVIFVGDNILEPTY--SLRYFYEKDDDNGTDYVYAEFYD--NAYY-----YVFRGEGID---AL--- 216 (474) T ss_pred CCCeeEEEEEcccceEEEEcCCCceEE--EEEEEEEeeCCCceEEEEEEEEc--CceE-----EEEeecCCC---cc--- Confidence 5 7899999999999999765565543 33334444445566777777765 2211 223332211 10 Q ss_pred cccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHh Q lcl|Aclame:pro 220 STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGML 299 (508) Q Consensus 220 ~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~ 299 (508) ..+.. ..++++.+|++.|+ |+ +.|.|+|.++++|||+||..+|++++.++.....+++ +. T Consensus 217 ~~~~~--------~~~~~g~vPvv~~~----n~-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~---i~ 276 (474) T protein:vir:10 217 QEVGR--------YEHLFDYNPLFGVP----NN-----KEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLV---LR 276 (474) T ss_pred ccccc--------ccCCCCccceEEec----CC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh---hc Confidence 01100 12445555555443 33 4589999999999999999999999999855555554 22 Q ss_pred cCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSN 379 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~ 379 (508) +.+.+... ..+......+... +++.+++.++++++.+++...++.+.+.|...++.+..+++. .+|..||.+++++ T Consensus 277 g~~~~~~~--~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Al~~~ 352 (474) T protein:vir:10 277 GMGMSEEM--IQETQKSGAFELF-DKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDE-FNGNVPIIGMKLK 352 (474) T ss_pred cCCCCchh--hhhhhhcceeEec-CCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccc-ccccchHHHHHHH Confidence 22222211 1111112222222 223468999999999999999999999998887765433322 2367799999999 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) ++.+.+++..+++.|+.+|+++++.|+.+....+. +..+....++++.|++++|.|..+.++.++++ .| T Consensus 353 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~---------~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g 421 (474) T protein:vir:10 353 LMALENKCMTFERKMTAMLRYQFKVILSALKRKGY---------NLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KG 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---------CCCccccccceEEeCCCCCCCHHHHHHHHHHH--hc Confidence 99999999999999999999999999987654211 11112234689999999999999999988887 49 Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcc-cccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGR-SAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~-~~~~~~~~g~ 508 (508) ++|.+|++..+|++++ +++|++||++|+.+.....+. ..+..+..++ T Consensus 422 ~iS~et~~~~l~~v~d--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~ 469 (474) T protein:vir:10 422 QVSERTRLGQSQLVDD--VDYELDEMEKESLEFNDKLPDIDEGDANDKSQ 469 (474) T ss_pred cCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccccCCCcCCCCc Confidence 9999999999999976 889999999887533222111 1111111111 No 49 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=5.6e-53 Score=307.04 Aligned_cols=447 Identities=13% Similarity=0.063 Sum_probs=299.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc----------------CCC Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA----------------SDG 64 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~----------------~~~ 64 (508) |.|.+-|...= ..-...+-|++..++ -.....++....+||.|.++...... ... T Consensus 1 ~~~~~~~~~~~----~~~~~~e~i~~~i~~-----~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (474) T protein:vir:94 1 MTLYKLIDDIE----AQGILPKHIEALIES-----HKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRL 71 (474) T ss_pred CchHHHHhhcc----ccCCCHHHHHHHHHH-----hhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhccccccc Confidence 77666443320 000011222332221 11245677888899988765321110 011 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCC----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKD----NNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~----~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) ..+..+|+++|||+.||++.|+||||+|+++++++ ++.++++|++++++|+|...+.+++..|+++|.+|.++|.| T Consensus 72 ~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d 151 (474) T protein:vir:94 72 DVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYID 151 (474) T ss_pred ccCcccccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeC Confidence 12244578999999999999999999999999854 44567889999999999999999999999999999999998 Q ss_pred C-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccc Q lcl|Aclame:pro 141 G-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPL 219 (508) Q Consensus 141 ~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l 219 (508) + |++++.+++|.+++|++.+.++... +++.+...+..+++.+.++++|+ +... ..|++.+.+ .. T Consensus 152 ~~~~~~~~~i~p~~~~~v~d~~~~~~~--~i~~~~~~~~~~~~~~~~~~~y~--~~~~-----~~~~~~~~~---~~--- 216 (474) T protein:vir:94 152 TNGDIRIKNIDPYNVIFVGDNILEPTY--SLRYFYEKDDDNGTDYVYAEFYD--NAYY-----YVFRGEGID---AL--- 216 (474) T ss_pred CCCeeEEEEEcccceEEEEcCCCceEE--EEEEEEEeeCCCceEEEEEEEEc--CceE-----EEEeecCCC---cc--- Confidence 5 7899999999999999765565543 33334444445566777777765 2211 223332211 10 Q ss_pred cccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHh Q lcl|Aclame:pro 220 STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGML 299 (508) Q Consensus 220 ~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~ 299 (508) ..+.. ..++++.+|++.|+ |+ +.|.|+|.++++|||+||..+|++++.++.....+++ +. T Consensus 217 ~~~~~--------~~~~~g~vPvv~~~----n~-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~---i~ 276 (474) T protein:vir:94 217 QEVGR--------YEHLFDYNPLFGVP----NN-----KEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLV---LR 276 (474) T ss_pred ccccc--------ccCCCCccceEEec----CC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh---hc Confidence 01100 12445555555443 33 4589999999999999999999999999855555554 22 Q ss_pred cCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSN 379 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~ 379 (508) +.+.+... ..+......+... +++.+++.++++++.+++...++.+.+.|...++.+..+++. .+|..||.+++++ T Consensus 277 g~~~~~~~--~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Al~~~ 352 (474) T protein:vir:94 277 GMGMSEEM--IQETQKSGAFELF-DKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDE-FNGNVPIIGMKLK 352 (474) T ss_pred cCCCCchh--hhhhhhcceeEec-CCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccc-ccccchHHHHHHH Confidence 22222211 1111112222222 223468999999999999999999999998887765433322 2367799999999 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) ++.+.+++..+++.|+.+|+++++.|+.+....+. +..+....++++.|++++|.|..+.++.++++ .| T Consensus 353 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~---------~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g 421 (474) T protein:vir:94 353 LMALENKCMTFERKMTAMLRYQFKVILSALKRKGY---------NLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KG 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---------CCCccccccceEEeCCCCCCCHHHHHHHHHHH--hc Confidence 99999999999999999999999999987654211 11112234689999999999999999988887 49 Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcc-cccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGR-SAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~-~~~~~~~~g~ 508 (508) ++|.+|++..+|++++ +++|++||++|+.+.....+. ..+..+..++ T Consensus 422 ~iS~et~~~~l~~v~d--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~ 469 (474) T protein:vir:94 422 QVSERTRLGQSQLVDD--VDYELDEMEKESLEFNDKLPDIDEGDANDKSQ 469 (474) T ss_pred cCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccccCCCcCCCCc Confidence 9999999999999976 889999999887533222111 1111111111 No 50 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=6.5e-52 Score=301.22 Aligned_cols=442 Identities=12% Similarity=0.060 Sum_probs=292.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.|-- +|-+....-..| ....|.+... --.++..++..+.+||.|+|+.+..... ...+...|+++|||+.| T Consensus 1 ~~~~~-~~~~~~~~~~~~-~~~~i~~~i~-----~~~~~~~r~~~~~~yy~g~~~i~~~~~~-~~~~~~~ki~~n~~~~i 72 (453) T protein:vir:73 1 MNLKP-IKLMTYSRDEEI-TDKVVNDFMK-----KHQEEVERYEYLGNMYKGIMEISSQKAK-DSWKPDNRLTNNFAKYI 72 (453) T ss_pred Ccccc-ceeeeccccccC-CHHHHHHHHH-----HHHHHHHHHHHHHHHhccccchhcCCCC-CccCccceeecchHHHH Confidence 54421 111111000000 1112222221 1124567889999999999987654332 33345678899999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQS 159 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~ 159 (508) |++.|+|||++|++++++ ++..++.|++++++|+|...+.++++.++++|.+|+++|+|+ |.+++.+++|.+++|++. T Consensus 73 vd~~~~~l~g~~~~~~~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d 151 (453) T protein:vir:73 73 VDTFVGYFNGIPIKKTHD-DKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVFMVYD 151 (453) T ss_pred HHHhhhhhcccCceeecC-ChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEe Confidence 999999999999999985 455678999999999999999999999999999999999974 789999999999999965 Q ss_pred cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCc Q lcl|Aclame:pro 160 NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQR 239 (508) Q Consensus 160 d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~ 239 (508) +..+.. .+++.+++... .+++ +.++|+ +...++ |+..... |. +. ....+++++ T Consensus 152 d~~~~~-~~~~i~~~~~~--~~~~--~~~vyt--~~~i~~-----~~~~~~~-------------~~-~~-~~~~~~~g~ 204 (453) T protein:vir:73 152 DSIKQK-PLFAVYYGFDE--EGNL--SGTVYT--LLETIS-----ITGKAGE-------------VK-FG-ESTYNVYSD 204 (453) T ss_pred CCCCce-eEEEEEEEEec--CceE--EEEEEe--CCeEEE-----EEecCCc-------------eE-Ec-cceeccCCc Confidence 543433 33333333322 2222 345544 221222 2221110 00 00 001134445 Q ss_pred ceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCC--CCccCCcccceEe Q lcl|Aclame:pro 240 PLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDE--HKPTFDTEQNVYV 317 (508) Q Consensus 240 ~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~ 317 (508) +|+++|+ | ++.|.|+|.++++|||+||.++|++++.++.....+++ +.+.+.+ ....+........ T Consensus 205 vPvv~~~----n-----~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~~~~~~~ 272 (453) T protein:vir:73 205 LPIVEYN----F-----NEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLV---FLGAEVDEEDAKNIKDNRLINF 272 (453) T ss_pred eeEEEec----C-----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceee---eecCCCCchhhhcccccccccc Confidence 5555443 3 34689999999999999999999999999654444444 1222111 1111211111111 Q ss_pred eec--C---CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 318 GVL--S---DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 318 ~~~--~---~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) ... . ....+..++.+++++..+.+...++.+.+.|...++.+. +++...|..||.+++++++.+..++..+++ T Consensus 273 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~ 350 (453) T protein:vir:73 273 FDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAAN--ISDENFGNSSGVALAYKLQAMSNLALSFQR 350 (453) T ss_pred cccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcc--cCcccccCccHHHHHHHHHHHHHHHHHHHH Confidence 111 0 111223378889999999999999999999988776543 455555778999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCC Q lcl|Aclame:pro 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYG 472 (508) Q Consensus 393 ~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~ 472 (508) .|+.+|+++++.|+.+....+ .......|+|.|++++|.|..+.++.+++++ |++|.+|++..+|+ T Consensus 351 ~~~~~l~~~~~li~~~~~~~~------------~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis~et~~~~~~~ 416 (453) T protein:vir:73 351 KFQSALNRRYSLWSSLSTNAS------------NKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITSEETALSVISV 416 (453) T ss_pred HHHHHHHHHHHHHHHHHhccC------------CccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCC Confidence 999999999999988754321 1122346889999999999999999888875 89999999999999 Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCccc--ccCCCCCCC Q lcl|Aclame:pro 473 MTDEQAAEELAKIQSEAPTDTFEGGRS--AILNGGDGE 508 (508) Q Consensus 473 ~~deea~~e~~ri~~E~~~~~~~~~~~--~~~~~~~g~ 508 (508) +++ +++|++||++|+.+........ .......|+ T Consensus 417 ~~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 452 (453) T protein:vir:73 417 IPD--VQAEMEKIKKKKLLQLSLTRTSNLVRMKQMRGN 452 (453) T ss_pred CCC--HHHHHHHHHHHHHHHHHHHHhccCCcchhhhcC Confidence 977 7788888888875432221111 112223333 No 51 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=4.4e-46 Score=269.27 Aligned_cols=437 Identities=13% Similarity=0.077 Sum_probs=281.3 Q ss_pred CChHHH-HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQR-IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~-ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~~~~n~~~ 78 (508) |+--+- |+.++++. .....++.+..+||.|+++. .+... .....++.++.+|||+ T Consensus 1 ~~t~~~~i~~L~~~~----------------------~~~~~r~~~l~~Yy~G~~~i-~~~~~~~~~~~~~~~~~~n~~~ 57 (480) T protein:vir:78 1 MTTYHEHVERLQGLL----------------------ARDLPNLLEAEAYRNGTRRL-KTIGIGAPPELAYLDVQPGWVA 57 (480) T ss_pred CCCHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhccccc-cccccccchhHhhhhhhcchHH Confidence 444332 22222110 12456788899999999974 33221 1222345567889999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEE------e-CCeeEEEEEcC Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYI------D-GNHIKIAWVRA 151 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~------d-~~~~~i~~v~a 151 (508) +||+..|++++.+. |++++++..++.|+++++.|+|...+.+++..|+.+|.+|+.+|- | +|.+++.+++| T Consensus 58 ~ivd~~~~~l~~~g--~~~~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p 135 (480) T protein:vir:78 58 TYLRTLSDRLDIEG--FRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESP 135 (480) T ss_pred HHHHHHHhhhccCc--eecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcc Confidence 99999999998665 555566667788999999999999999999999999999999885 2 47899999999 Q ss_pred CeEEEEEEcCC--CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 152 DQFYPLQSNTN--DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 152 ~~~~Pi~~d~~--~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) .+++|++.+.. ++..++ ..+...+. ...+++.++|+ . ..|.+ |...+....+... . T Consensus 136 ~~~~~~~D~~~~~~~~~~i--~~~~~~~~--~~~~~~~~~y~--~---~~~~~--~~~~~~~~~~~~~-----------~ 193 (480) T protein:vir:78 136 LYMYAELDPRNTRRVTRAV--RLYTTRDD--VAVPDRATLYL--P---DETVP--LRRNGGLNDQWVV-----------D 193 (480) T ss_pred cceEEEEcCCCccceEEEE--EEEEeecC--CCceEEEEEEe--C---CeEEE--EEecCCCcccccc-----------c Confidence 99999854332 232222 22222222 22345666665 1 12222 2211111111000 0 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeechHHhc--CCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLR--FDDEH 305 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~--~~~~~ 305 (508) .+..-++++++|++ |++|+...+.|+|+|+|.. +++|+|+||..+|++++.++ ++.+.+++...-.. .+..+ T Consensus 194 ~~~~~~~~g~vPvv----~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~ 269 (480) T protein:vir:78 194 GDVIKHGLGVVPVV----PLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGE 269 (480) T ss_pred cccccCCCCCcceE----EeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccc Confidence 11123456666655 3458888888999999996 89999999999999999986 55565555210000 00001 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY 384 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~ 384 (508) ...+.... ..+...+++ .+++.+++ ...+.|++.++.++++|+..+++++..||..+....||.+++.++..+. T Consensus 270 ~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~ 344 (480) T protein:vir:78 270 NTTLDIYY---GRILTLASE--AAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIV 344 (480) T ss_pred cchhhhhh---hhhccCCCC--CceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHH Confidence 11111100 111111122 24444433 3579999999999999999999999999987766778999999999999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC--CCC Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG--ALS 462 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G--i~s 462 (508) .++..+++.|..+|+++++.|+.+... ........+++.|.+..+.|..+.++.+.+++++| ++| T Consensus 345 ~ka~~~~~~f~~~l~~~~~l~~~~~g~-------------~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s 411 (480) T protein:vir:78 345 KMAERKGRIFGGAWERAMRIAMQIMGR-------------EVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIP 411 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCC Confidence 999999999999999999988876421 11223356889999999999999999999998866 899 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCC-------CCCCcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAPTD-------TFEGGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~~~-------~~~~~~~~~~~~~~g~ 508 (508) .++++..+ |+++++.++ +++.++|+... ....+......+..|| T Consensus 412 ~et~~~~l-g~~~d~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480) T protein:vir:78 412 KEQARIDL-GYTATQREQ-MRDWDKQETEDMIDTLYSTTKAQADATPKPTVTE 462 (480) T ss_pred HHHHHhcC-CCCHhHHHH-HHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC Confidence 99999877 555655433 32333222110 1111111111122222 No 52 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=9.8e-46 Score=267.35 Aligned_cols=440 Identities=13% Similarity=0.063 Sum_probs=281.3 Q ss_pred CChHHH-HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQR-IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~-ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) |+--.- |+.+++ ++ .....++.+..+||.|+++..+.........++.++.+|||++ T Consensus 1 ~~t~~d~i~~L~~----~~------------------~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ 58 (480) T protein:vir:78 1 MTTYHEHVERLQG----LL------------------ARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVAT 58 (480) T ss_pred CCCHHHHHHHHHH----HH------------------HHHHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHH Confidence 443222 222211 10 1245678888899999987432111112223355678899999 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEE------e-CCeeEEEEEcCC Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYI------D-GNHIKIAWVRAD 152 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~------d-~~~~~i~~v~a~ 152 (508) ||+..|++|+.+. +++++++..++.|+++++.|+|...+.+++..|+.+|.+|+.+|- | ++.++|.+++|. T Consensus 59 ivd~~~~~l~~~g--~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~ 136 (480) T protein:vir:78 59 YLRTLSDRLDIEG--FRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPL 136 (480) T ss_pred HHHHHHhhhccCc--eecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEccc Confidence 9999999998765 555566667788999999999999999999999999999998874 2 578999999999 Q ss_pred eEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcce Q lcl|Aclame:pro 153 QFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQV 232 (508) Q Consensus 153 ~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~ 232 (508) +++|++.+..+..-..++..+...+ ....++++++|+- ..|.+ |...+....+..+ ..+. T Consensus 137 ~~~~i~D~~~~~~~~~~i~~~~~~d--~~~~~~~~~~y~~-----~~~~~--~~~~~~~~~~~~~-----------~~~~ 196 (480) T protein:vir:78 137 YMYAELDPRNTRRVTRAVRLYTTRD--DVAVPDRATLYLP-----DETVP--LRRNGGLNDQWVV-----------DGDV 196 (480) T ss_pred ceEEEEcCCCccceEEEEEEEEeec--CCcceEEEEEEeC-----CeEEE--EEecCCCcccccc-----------cccc Confidence 9999854332221122222222222 2234566777652 12222 2211111111110 0111 Q ss_pred eecCCCcceEEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeechHHhc--CCCCCCcc Q lcl|Aclame:pro 233 TISGLQRPLFAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLR--FDDEHKPT 308 (508) Q Consensus 233 ~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~--~~~~~~~~ 308 (508) .-++++++|++ |++|+...+.++|+|++.. +++|+|+||..+|++++.++ .+-+.+++...-+. .+..+... T Consensus 197 ~~~~~g~vPvv----~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~ 272 (480) T protein:vir:78 197 IKHGLGVVPVV----PLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTT 272 (480) T ss_pred cccCCCCcceE----EeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccch Confidence 22455665554 4568888888999999985 89999999999999999986 34444444210000 00111111 Q ss_pred CCcccceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhH Q lcl|Aclame:pro 309 FDTEQNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTR 387 (508) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~ 387 (508) +.... ..+...+++ .+++.+++ ...+.+.+.++.++++|+..+++++..||..+....||.+++++...|..++ T Consensus 273 ~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~ 347 (480) T protein:vir:78 273 LDIYY---GRILTLASE--AAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMA 347 (480) T ss_pred hhhhh---hhhccCCCC--CceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHH Confidence 11100 111111122 24444433 3578999999999999999999999999977666678999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC--CCCHHH Q lcl|Aclame:pro 388 SSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG--ALSKQT 465 (508) Q Consensus 388 ~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G--i~s~et 465 (508) ..+++.|+.+|+++++.|+.+... ........+++.|.+..+.|..+.++.+.+++++| ++|.++ T Consensus 348 ~~~~~~f~~~l~~~~rl~~~~~~~-------------~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et 414 (480) T protein:vir:78 348 ERKGRIFGGAWERAMRIAMQIMGR-------------EVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQ 414 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-------------CccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHH Confidence 999999999999999988766321 11123456899999999999999999999999876 789999 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCC-------CCCCcccccCCCCCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTD-------TFEGGRSAILNGGDGE 508 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~-------~~~~~~~~~~~~~~g~ 508 (508) ++..+ |+++++++++. ++++++..+ ...........+..|| T Consensus 415 ~~~~l-g~~~d~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480) T protein:vir:78 415 ARIDL-GYTATQREQMR-DWDKQETEDMIDTLYSTTKAQADATPKPTVTE 462 (480) T ss_pred HHhcC-CCCHhHHHHHH-HHHHHHHHHHHHHhhccccCCCccccCCCCCC Confidence 88877 56666655533 333332110 0111111111122222 No 53 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=5.3e-45 Score=263.30 Aligned_cols=432 Identities=14% Similarity=0.117 Sum_probs=277.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) .-+++++.+.++ +...++....+||.|+++..+.........++.+.++|||++| T Consensus 14 ~~~~~~l~~~~~-------------------------~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~i 68 (484) T protein:vir:77 14 EKAREEMLNLFT-------------------------ERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLAHVGYPRLY 68 (484) T ss_pred HHHHHHHHHHHH-------------------------HHHHHHHHHHHHHhccccchhcccccchhHHhhhhhcCcHHHH Confidence 212222222211 1234566778999999874221111122223345678999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCC---------eeEEEEEcC Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN---------HIKIAWVRA 151 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~---------~~~i~~v~a 151 (508) |+.+|++++.+. |++++++..++.+++++++|+|.....+++..|+.+|.+|+.+|.+++ .++|.+++| T Consensus 69 vd~~~~~l~~~g--~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p 146 (484) T protein:vir:77 69 IDAIAARQELEG--FRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPP 146 (484) T ss_pred HHHHHhhhccCc--eecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEecc Confidence 999999998765 555566667788999999999999999999999999999999999853 246889999 Q ss_pred CeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) .++++++ |.... ...++.+++..+..+ ..++++.|+ .+..+ .++..... +..... T Consensus 147 ~~~~~~~-D~~~~-~~~~a~~~~~~~~~~--~~~~~~~y~--~~~~~----~~~~~~~~--------~~~~~~------- 201 (484) T protein:vir:77 147 TNLYAQI-DPRTR-QVMRAIRAIEDEEGN--EVIGATLYL--PNNTV----IWNREDGQ--------WVQVAN------- 201 (484) T ss_pred ceeEEEe-cCCCC-ceEEEEEEEEeecCC--cEEEEEEEe--cCeEE----EEEecCCc--------eEeecc------- Confidence 9999985 43222 222222333222222 233445443 11122 22222111 000000 Q ss_pred eeecCCCcceEEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeec----hHHhcCCCCC Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQ----PGMLRFDDEH 305 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~----~~~~~~~~~~ 305 (508) ..++++++|++ +++|+...+.|+|+|+|.. +++|+|+||.++|++.+..+ .+-+..++. +.....++.+ T Consensus 202 -~~~~~g~vPvv----~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~ 276 (484) T protein:vir:77 202 -VAHNLEMVPVI----PIPNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDPETG 276 (484) T ss_pred -ccCCCCCcceE----EeccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhccccccc Confidence 12455555554 4567888888999999984 88999999999999999876 455555541 1111112222 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+......+..+ ++++..+..++ ....+.|++.++.++++|...+++++..||..+.+..||.+++++...+.+ T Consensus 277 ~~~~~~~~~~~~~~---~~~~~~~~q~~-~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ 352 (484) T protein:vir:77 277 QTLFDAYLARILAF---EDHESKAQQFS-AAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVK 352 (484) T ss_pred chhhhhhhhhhccc---CCCCceeEeec-CCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHH Confidence 22222211111111 11222333333 345689999999999999999999999999877777899999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC--CCCH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG--ALSK 463 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G--i~s~ 463 (508) ++..+++.|+.+|+++++.++.+.... ........+.+.|.+..+.|..+.++.+.+++++| ++|. T Consensus 353 ka~~k~~~f~~~l~~~~~l~~~~~~~~------------~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~ 420 (484) T protein:vir:77 353 TVERKNKIFGGAWEQAMRVAYKVMNGG------------DIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPK 420 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC------------CcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCH Confidence 999999999999999999888764311 11123346889999999999999999999999876 9999 Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCC-----CCCCcccccCCCCCCC Q lcl|Aclame:pro 464 QTFLQRNYGMTDEQAAEELAKIQSEAPTD-----TFEGGRSAILNGGDGE 508 (508) Q Consensus 464 et~l~~~~~~~deea~~e~~ri~~E~~~~-----~~~~~~~~~~~~~~g~ 508 (508) ++++..+ ++++++++ +++++++|+... ....+ .....+++|+ T Consensus 421 et~~~~l-~~~~~~~~-e~~~~~~ee~~~~~~~~~~~~~-~~~~~~~~~~ 467 (484) T protein:vir:77 421 ERARIDM-GYSITERE-EMRKWDEEEQAQGLGLMGTMFG-TDPSGGGNPD 467 (484) T ss_pred HHHHhcC-CCChhHHH-HHHHHHHHHHHHHHHHHhhhcc-ccccCCCCCC Confidence 9988876 56666543 466666553211 00000 0111111111 No 54 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=3.9e-45 Score=264.05 Aligned_cols=442 Identities=14% Similarity=0.137 Sum_probs=280.7 Q ss_pred hhhhhhhhHHhhccc-----cccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcC Q lcl|Aclame:pro 17 ATGVTGSLSKITDDP-----RISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNE 91 (508) Q Consensus 17 ~~~~~~~~~~~~~~~-----~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e 91 (508) ....+..++..-+.. -|..-.....++.+..+||.|+|+............++.++.+|||+.||+.+|++|+.+ T Consensus 1 ~~~~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~ 80 (485) T protein:vir:24 1 MTAPLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRPEAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQAVE 80 (485) T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCcccchhhhhhhhccchHHHHHHHHhhhhccC Confidence 001111111111000 001112345788889999999997432211112223455667899999999999999876 Q ss_pred cceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC---------CeeEEEEEcCCeEEEEEEcCC Q lcl|Aclame:pro 92 KAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG---------NHIKIAWVRADQFYPLQSNTN 162 (508) Q Consensus 92 ~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~---------~~~~i~~v~a~~~~Pi~~d~~ 162 (508) + |++++++..++.+++++++|+|.....+++..|+.+|.+|+.+|.++ +.++|..++|.+++|++.+.. T Consensus 81 g--~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~ 158 (485) T protein:vir:24 81 G--FRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRI 158 (485) T ss_pred c--eecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCc Confidence 5 56667777788899999999999999999999999999999999874 456899999999999854332 Q ss_pred CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceE Q lcl|Aclame:pro 163 DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLF 242 (508) Q Consensus 163 ~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f 242 (508) +. ...++..+... .+...+++++|+ ++..|+ ++... |.-+.... ..++++.+|+ T Consensus 159 ~~-~~~~~~~~~~~---~~~~~~~~~~y~--~~~~~~----~~~~~-----~~~~~~~~-----------~~h~~g~vPv 212 (485) T protein:vir:24 159 GR-PAKAIRVAYDA---EGNEIQAATLYT--PNETFG----WFRAE-----GEWVEWFS-----------DPHGLGAVPV 212 (485) T ss_pred Cc-eeEEEEEEEee---cCCeEEEEEEEc--CCcEEE----EEecC-----CceEeecc-----------cccCCCcccE Confidence 22 22232333322 122344455543 222222 22221 11111111 1134555555 Q ss_pred EEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeech----HHhcCCCCCCccCCcccceE Q lcl|Aclame:pro 243 AYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQP----GMLRFDDEHKPTFDTEQNVY 316 (508) Q Consensus 243 ~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~----~~~~~~~~~~~~~~~~~~~~ 316 (508) + +++|+.....|+|+|++.. +++|||+||.+.|++.+..+ .+-+.+++.. ..-..++.+...+.... T Consensus 213 v----~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~--- 285 (485) T protein:vir:24 213 V----PLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFDAYL--- 285 (485) T ss_pred E----EeccCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccccchhhhcc--- Confidence 5 4467777888999999995 89999999999999999876 4555554421 11111222222222111 Q ss_pred eeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 317 VGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 317 ~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) .++...++++..+..++ ....+.|++.++.++++++..+++++..||.......||.+++++...+.+++..+++.|.. T Consensus 286 ~~i~~~~~~~~~~~q~~-~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~ 364 (485) T protein:vir:24 286 ARILAFEDAEGKIQQFS-AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGG 364 (485) T ss_pred cceeccCCCCceEEeec-ccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111111222232222 34568999999999999999999999999977766678999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC--CCCHHHHHHhcCCCC Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG--ALSKQTFLQRNYGMT 474 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G--i~s~et~l~~~~~~~ 474 (508) +|+++++.++.+.... ........+++.|.++.+.|..+.++.+.+++++| ++|.+|++..+ +++ T Consensus 365 ~l~~~~~l~~~~~~~~------------~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l-~~~ 431 (485) T protein:vir:24 365 AWEEAMRLAYRLMKGG------------DVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDM-GYS 431 (485) T ss_pred HHHHHHHHHHHHhcCC------------CCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhC-CCC Confidence 9999999988764321 11223457899999999999999999999998765 89999988765 566 Q ss_pred HHHHHHHHHHHHHhccCC-----------CC-CCcccccCCCCC-------CC Q lcl|Aclame:pro 475 DEQAAEELAKIQSEAPTD-----------TF-EGGRSAILNGGD-------GE 508 (508) Q Consensus 475 deea~~e~~ri~~E~~~~-----------~~-~~~~~~~~~~~~-------g~ 508 (508) ++++ ++++++++|+... .+ .+++...-+..+ || T Consensus 432 ~d~~-~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 483 (485) T protein:vir:24 432 IAER-EEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGD 483 (485) T ss_pred HhHH-HHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCCC Confidence 6654 4566665554211 01 001100000111 11 No 55 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=4.3e-45 Score=263.79 Aligned_cols=440 Identities=10% Similarity=0.089 Sum_probs=274.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCcccc--CccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIH--YQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~--~~~~~~~~~~~~~~~~n~~~ 78 (508) |.=.+ .-..++....+ =.....++++..+||.|+|+... .......+...+++++|||+ T Consensus 1 ~~~~t--------------~~~~~~~l~~~-----~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~ 61 (456) T protein:vir:79 1 MTAST--------------PAEWLPVLTKR-----IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) T ss_pred CCCCC--------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHH Confidence 11000 00011111111 01245678888999999998432 11111122233456789999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEEEEEcCCeEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKIAWVRADQFYPL 157 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i~~v~a~~~~Pi 157 (508) .||+.+|+|++++|+++...++...++.+++++++|+|.....+++..|+.+|.+|+.+|.+ +|.+++.+++|.+++|+ T Consensus 62 ~ivd~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i 141 (456) T protein:vir:79 62 MVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHHHHHHhhhccCCeecCCCCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEE Confidence 99999999999999988876655667789999999999999999999999999999999987 47899999999999998 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEE--EEEEEEecCCccccCccccccccccccCCCcc-eee Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQ--ITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ-VTI 234 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~--I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~-~~~ 234 (508) +.+..+..-++++ +++.... +...|. ..+ .+.+.++ .....+..... ..+.... ..+.+. ... T Consensus 142 ~d~~~~~~~~~~~-~~~~~~d-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~ 207 (456) T protein:vir:79 142 VDPLQPWRIRSAM-RWWRDLD-AESDFA-IVW---SGDGWQKFARPCFVQSSSRR------RLVTRIS--DSWVPVGDAV 207 (456) T ss_pred EcCCCCCceEEEE-EEEEecC-CceeEE-EEE---cCCceEEEEEEEEeeccccc------eeeeccC--Cceeeccccc Confidence 5443332222222 2222222 222221 111 1222211 11111111110 0000000 001111 112 Q ss_pred cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech---HHhcCCCCCCccCC Q lcl|Aclame:pro 235 SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP---GMLRFDDEHKPTFD 310 (508) Q Consensus 235 ~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~---~~~~~~~~~~~~~~ 310 (508) +++++|+++++ || +.|+|+|.++++|||+||.++|+.++..+. +-+..++.. .+...+..|...-. T Consensus 208 ~~~~~~pvv~~-----~N-----~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~ 277 (456) T protein:vir:79 208 VTGSPPPVVVY-----QN-----PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDY 277 (456) T ss_pred CCCCceeEEEe-----cC-----CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccch Confidence 34566666554 22 468999999999999999999999887653 333333311 11112222322211 Q ss_pred cc--cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 311 TE--QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRS 388 (508) Q Consensus 311 ~~--~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~ 388 (508) .+ .....++-..+ .+..+..++ +...+.+.+.++.++++|...+++++..|+...+ ..||.++++++..+.+++. T Consensus 278 ~~~~~~~~~~~~~~~-~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~-N~Sg~Al~~~~~~l~~k~~ 354 (456) T protein:vir:79 278 ASIFEAAPGALWELP-PGVDIWESQ-TNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCE 354 (456) T ss_pred hhhhhhhccccccCC-CCcceeeec-ccChHHHHHHHHHHHHHHHhhcCCChhHhccccc-CcHHHHHHHHHHHHHHHHH Confidence 00 00011111111 222333332 4566889999999999999999999999986543 4589999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~ 468 (508) .+++.|+.+|+++++.++.+.. . .+...+.+.|.++.+.|..++++...+++++|++|.++++. T Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g--------------~--~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~ 418 (456) T protein:vir:79 355 DRLSIAKIGLEAILVKALQIEG--------------E--SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN 418 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------------C--CccccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHh Confidence 9999999999999998876532 1 12346889999999999999999999999999999998765 Q ss_pred hcCCCCHHHH-HHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 469 RNYGMTDEQA-AEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 469 ~~~~~~deea-~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+|++++++ ++|++|+++|...... ++...++.| T Consensus 419 -~lg~~~~~i~~~e~~r~~~e~~~~~~-----~~~~~~~~~ 453 (456) T protein:vir:79 419 -ILNYNADQIKQDDLDRAREQITLFAG-----NPVQRPQED 453 (456) T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHhh-----hHhhcCCCC Confidence 678988764 5677777776532111 111222222 No 56 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=1e-43 Score=256.33 Aligned_cols=451 Identities=10% Similarity=0.034 Sum_probs=274.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCcc--ccCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQY--IHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~--~~~~~~~~~~~~~~~~~~n~~~ 78 (508) +---+.+..++.+..... .....++....+||.|+|+. +........+...++.++|||+ T Consensus 22 ~~~~~~~~~l~~~l~~~~------------------~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n~~~ 83 (501) T protein:vir:25 22 SMSREQLGALVADMWRLH------------------ISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKNVLS 83 (501) T ss_pred cCChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhhcChHH Confidence 111122222222222110 12345778888999999873 2222222222223345679999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQ 158 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~ 158 (508) +||+.+|++++.+ .|++.+.+ .++.++++++.|+|.....+++..|+.+|.+|+.+|.++...+|.+++|.++++++ T Consensus 84 ~ivd~~a~~l~~~--gf~~~d~~-~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~~i~~~sp~~~~~iy 160 (501) T protein:vir:25 84 LVRDSFAQNLSVV--GYRNALAK-ENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEGPVFRTRSPRQILAVY 160 (501) T ss_pred HHHHHHHhhhccc--ceecCCcc-chHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCCeEEEeccccEEEEE Confidence 9999999999755 56765544 35678999999999999999999999999999999999877789999999999996 Q ss_pred EcCC-C--eEEEEEEEEEEEeecCCc---EEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcce Q lcl|Aclame:pro 159 SNTN-D--ISEAAIASRTQRTESNQT---KYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQV 232 (508) Q Consensus 159 ~d~~-~--~~~~~f~~~~~~~~~~~~---~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~ 232 (508) .|.. + ...++..+.... +.+.. .+|+--..|++..++. +............+.+........+... T Consensus 161 ~D~~~~~~~~~ai~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (501) T protein:vir:25 161 ADPSVDAWPQYALETWVAQK-DAKPHRRGVLYDDTYMYELDLGEV-------VLGDAGGGQATQQPVNVREVTDVIEHGA 232 (501) T ss_pred ecCCCCcceeEEEEEEeecc-ccCcceeEEEecCeeEEEEecCce-------eeeecccccccccccccccccccccccc Confidence 5533 2 222222222111 11111 1222111222221111 1000000000000111100000001011 Q ss_pred eecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeechHHhcCCCCCCccCCc Q lcl|Aclame:pro 233 TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQPGMLRFDDEHKPTFDT 311 (508) Q Consensus 233 ~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~~~~~~~~~~~~~~ 311 (508) ..++++..|+ ++++|+... ++.|.|+|+.+++|+|++|++.|+..+..+. +-+..++ ++.+++....+.. T Consensus 233 ~~~~~~~vPi----v~f~N~~~~-~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i----~G~~~~~~~~~~~ 303 (501) T protein:vir:25 233 TFEGKPVCPV----VRFVNGRDA-DDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVI----SGWTGSKAEVLKA 303 (501) T ss_pred ccCCccceee----EeccCcccc-CccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHH----hCCCCCccchhhh Confidence 1123333333 345666553 6789999999999999999999999998764 3332222 3333332222222 Q ss_pred ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 312 EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) .......+ . +.+..+..++ ....+.|.+.++.++++|...+++++.+|+...+ ..||.+++++...|..++..++ T Consensus 304 ~~~~i~~~--~-~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~-N~Sg~Al~~~~~~l~~ka~~k~ 378 (501) T protein:vir:25 304 SALRVWTF--E-DPEVKAQAFP-PASVEPYNLILEEMLQHVAMVAQISPAQVTGKMI-NVSAEALAAAEANQQRKLAAKR 378 (501) T ss_pred cccceecc--C-CCCceEEEec-ccChHHHHHHHHHHHHHHHhhcCCChhhhccccC-ChHHHHHHHHHHHHHHHHHHHH Confidence 21111111 1 1222333332 3456889999999999999999999999986543 4589999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcC Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNY 471 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~ 471 (508) +.|..+|+++++.++.+... ........+++.|.+..+.|..+.++.+.+++++|+ |.++.+..+| T Consensus 379 ~~f~~~l~~~~rl~~~~~~~-------------~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~ 444 (501) T protein:vir:25 379 ESFGESWEQLLRLAAEMDDD-------------PDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVP 444 (501) T ss_pred HHHHHHHHHHHHHHHHHhCC-------------CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcC Confidence 99999999999988766421 112234678999999999999999999999998885 9999999999 Q ss_pred CCCHHHHHHHHHHHHHhccCC--------CC--C---Cc----ccccCCCCCCC Q lcl|Aclame:pro 472 GMTDEQAAEELAKIQSEAPTD--------TF--E---GG----RSAILNGGDGE 508 (508) Q Consensus 472 ~~~deea~~e~~ri~~E~~~~--------~~--~---~~----~~~~~~~~~g~ 508 (508) |+|+++++++.++.+++.+.. ++ . ++ +....++.+|+ T Consensus 445 g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (501) T protein:vir:25 445 GMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQALNEGGVNGN 498 (501) T ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCCccccccccCCCC Confidence 999988777666555443210 00 0 00 01111111111 No 57 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=2.2e-43 Score=254.48 Aligned_cols=440 Identities=13% Similarity=0.114 Sum_probs=280.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.-.+-.-.++ +....+ -..+..++++..+||.|+|+............++.+..+|||++| T Consensus 8 ~~~~~~~~~~~-------------~~l~~~-----~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~i 69 (485) T protein:vir:10 8 QEEIEDPAIAR-------------DEMVSA-----FEDSTQNLKTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLY 69 (485) T ss_pred CCCCCCHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHH Confidence 11111000011 111100 113456788999999999875332222222333455667999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC---------CeeEEEEEcC Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG---------NHIKIAWVRA 151 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~---------~~~~i~~v~a 151 (508) |+.+|++|+.. .|++.+++..++.+++++..|+|.....+++..|+.+|.+|+.+|.++ +.++|.+++| T Consensus 70 vd~~~~~l~~~--g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p 147 (485) T protein:vir:10 70 VDSIAERQAVE--GFRFGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPP 147 (485) T ss_pred HHHHHhhhccc--ceecCCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEcc Confidence 99999999765 466666666778899999999999999999999999999999999863 5678999999 Q ss_pred CeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 152 DQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) .+++|++.+..+...+++.+ ++.. .+..++++++|+ ++..|+ +++..+. +.... T Consensus 148 ~~~~~~~D~~~~~~~~~~~~-~~~~---~~~~~~~~~~y~--~~~~~~----~~~~~~~--------~~~~~-------- 201 (485) T protein:vir:10 148 TRMYAEIDPRIGRVSKAIRV-AYDA---EGNEIQAATLYT--PNDIFG----WYRVENE--------WQEWF-------- 201 (485) T ss_pred ceeEEEEcCCCCceeEEEEE-EEee---CCCeEEEEEEEe--CCeEEE----EEEcCCc--------eEEec-------- Confidence 99999854333333333332 2222 223455666654 221221 1111111 00000 Q ss_pred eeecCCCcceEEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeech----HHhcCCCCC Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQP----GMLRFDDEH 305 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~----~~~~~~~~~ 305 (508) ..-++++++|++ +++|+.+...++|+|++.. +++|||+||.++|++.+..+ .+-+..++.. ..-..++.+ T Consensus 202 ~~~~~~g~vPvv----~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~ 277 (485) T protein:vir:10 202 NNPHGLGVVPVV----PIPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETG 277 (485) T ss_pred cccCCCCcccEE----EeccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCccccccccccc Confidence 011344555544 4568888889999999985 89999999999999999876 4444444411 111112222 Q ss_pred CccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ...+..... ++-..++....+..++ .-..+.|++.++.++++|+..+++++..|+....+..||.++++....+.. T Consensus 278 ~~~~~~~~~---~i~~~~~~d~k~~q~~-~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ 353 (485) T protein:vir:10 278 QTLFDAYLA---RILAFEDAEGKIQQFS-AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIK 353 (485) T ss_pred chhhhhccc---ceeccCCCCceEEeec-ccchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHH Confidence 222221111 1111111112232222 235688999999999999999999999998877666789999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC--CCCH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG--ALSK 463 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G--i~s~ 463 (508) ++..+++.|..+|+++++.++.+.... ........+.+.|.++.+.|..+.++...+++++| ++|. T Consensus 354 k~~~k~~~f~~~l~~~~~l~~~~~~~~------------~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~ 421 (485) T protein:vir:10 354 KVERKNSIFGGAWEEAMRLAYRMMKGG------------DVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPR 421 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC------------CCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCH Confidence 999999999999999999887764321 11223357889999999999999999999999876 9999 Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCC---------CCCCc----------ccccCCCCCCC Q lcl|Aclame:pro 464 QTFLQRNYGMTDEQAAEELAKIQSEAPTD---------TFEGG----------RSAILNGGDGE 508 (508) Q Consensus 464 et~l~~~~~~~deea~~e~~ri~~E~~~~---------~~~~~----------~~~~~~~~~g~ 508 (508) ++++.. +|++++++ ++++++++|+... .+.++ .....+...|| T Consensus 422 et~~~~-lg~~~~~~-~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485) T protein:vir:10 422 ERARKD-MGYSIAER-EEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGGD 483 (485) T ss_pred HHHHHh-CCCCHhHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCcCCCCCCC Confidence 999875 57777765 4455554443110 00000 00011112222 No 58 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=4.7e-43 Score=252.65 Aligned_cols=439 Identities=13% Similarity=0.109 Sum_probs=279.9 Q ss_pred CCh--HHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGL--IQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~ 78 (508) +|+ .+--+.++.+...++ .....++....+||.|+|+............++.+..+|||+ T Consensus 6 ~~~~e~~~~~~~~~~l~~~~------------------~~~~~r~~~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~ 67 (486) T protein:vir:42 6 PGMEEIEDPAVVREEMISAF------------------EDASKDLASNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPR 67 (486) T ss_pred CCCCCcccHHHHHHHHHHHH------------------HHHHHHHHHHHHHhcccCcchhcccccchhHhhhhhccchHH Confidence 222 111111221111110 123467777889999999753211111122223355679999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---------CCeeEEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---------GNHIKIAWV 149 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---------~~~~~i~~v 149 (508) +||+.+|++|... .+++++++..++.++++++.|+|.....+++..|+.+|.+|+.+|.+ ++.+++..+ T Consensus 68 ~iVd~~~~~l~~~--g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~ 145 (486) T protein:vir:42 68 LYVDSVAERQAVE--GFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVE 145 (486) T ss_pred HHHHHHHhhhccc--ceecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEe Confidence 9999999999654 56776777777889999999999999999999999999999999865 345789999 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|.+++|++.+..+. ..+++..++. + .++..+++++|+ ++..++. ... + |...... T Consensus 146 ~p~~~~~i~d~~~~~-~~~~~~~~~~-~--~~~~~~~~~~y~--~~~~~~~----~~~-~----~~~~~~~--------- 201 (486) T protein:vir:42 146 PPTRMHAEIDPRINR-VSKAIRVAYD-K--EGNEIQAATLYT--PMETIGW----FRA-D----GEWAEWF--------- 201 (486) T ss_pred cccceEEEEeCCCCC-eEEEEEEEEe-c--CCCeEEEEEEEc--CCcEEEE----Eec-C----CcEEeec--------- Confidence 999999985433322 2233333332 2 233455566654 3222222 111 1 1100000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeech----HHhcCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQP----GMLRFDD 303 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~----~~~~~~~ 303 (508) -..++++++|++ +++|+.....++|+|+|+. +++|||+||.++|+..+..+ .+-+..++.. .....++ T Consensus 202 --~~~h~~g~vPvv----~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~ 275 (486) T protein:vir:42 202 --NVPHGLGVVPVV----PLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSE 275 (486) T ss_pred --ceecCCCCceEE----EeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCccccccccc Confidence 112455555554 4568888889999999995 88999999999999988775 3444444310 0001112 Q ss_pred CCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 304 EHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMT 383 (508) Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l 383 (508) .+...+..... ++...+++...+..+ +....+.|++.++.+++++...+++++..||.......||.++++++..+ T Consensus 276 ~~~~~~~~~~~---~~~~~~~~~~~~~q~-~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l 351 (486) T protein:vir:42 276 TGQTLFDAYLA---RILAFEDAEGKIQQF-SAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRL 351 (486) T ss_pred cccchhhhhhc---hhcccCCCCceEEee-cccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHH Confidence 22222221111 111111111223333 23467899999999999999999999999998777778999999999999 Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhC--CCC Q lcl|Aclame:pro 384 YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAI--GAL 461 (508) Q Consensus 384 ~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~--Gi~ 461 (508) ..++..+++.|..+|+++++.++.+.... ....+...+.+.|.++.+.|..+.++.+.+++++ |++ T Consensus 352 ~~ka~~~~~~f~~~l~~~~~l~~~~~~~~------------~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~ 419 (486) T protein:vir:42 352 IKKVERKNLMFGGAWEEAMRIAYRIMKGG------------DVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVI 419 (486) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCC Confidence 99999999999999999999887764311 1122335688999999999999999999999876 799 Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccCC------------CCCCcccc-----------cCCCCCC Q lcl|Aclame:pro 462 SKQTFLQRNYGMTDEQAAEELAKIQSEAPTD------------TFEGGRSA-----------ILNGGDG 507 (508) Q Consensus 462 s~et~l~~~~~~~deea~~e~~ri~~E~~~~------------~~~~~~~~-----------~~~~~~g 507 (508) |.++++..+ ++++++ .+|++|+++|+... ....+... .-.|++| T Consensus 420 s~et~~~~l-g~~~d~-~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 420 PRERARIDM-GYSVKE-REEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred CHHHHHhcC-CCChhH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCCCC Confidence 999998765 566554 35677776554211 00000000 1112222 No 59 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=1.9e-44 Score=260.24 Aligned_cols=432 Identities=10% Similarity=0.021 Sum_probs=269.3 Q ss_pred hHHH---------HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcc---cccc Q lcl|Aclame:pro 3 LIQR---------IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIK---KKRL 70 (508) Q Consensus 3 ~~~~---------ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~---~~~~ 70 (508) ||+- |+.++. .+| +..=.....++....+||.|+|+........... .-.+ T Consensus 1 ~~~~p~~~l~~~~~~~~~~---~~l--------------~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~ 63 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLE---TKV--------------FPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQ 63 (479) T ss_pred CccCCcccCChhHHHHHHH---HHH--------------HHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHH Confidence 2210 111110 000 0000124567888899999998744322111111 1123 Q ss_pred ccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEE-----e-CCee Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYI-----D-GNHI 144 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~-----d-~~~~ 144 (508) ++.+|||++||+.+|++++.+ .|++.+++ .++.++++++.|+|.....+++..|+.+|.+|+.+|. | .+.+ T Consensus 64 ~~~~n~~~~iVd~~~~~l~~~--gf~~~d~~-~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~ 140 (479) T protein:vir:99 64 LSRKPWMGLMVNSFAQQLIVD--GYRKTGTN-ENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA 140 (479) T ss_pred HhhcCcHHHHHHHHHhhcccc--cccCCCch-hhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce Confidence 346799999999999999754 57766555 3567899999999999999999999999999998884 3 3678 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~ 224 (508) ++.+++|.+++|++.+.......+++.++. ......+|+...++ .|...+. + T Consensus 141 ~i~~~~p~~~~~iydd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~~~~---~---------- 192 (479) T protein:vir:99 141 RIKCIDPRDAFAIWEDPYWDEWPKYLLERQ--PNGQYWWWTEEDYS-------------IFEFKQG---K---------- 192 (479) T ss_pred EEEEechhheEEEecCCcccceeeEEEeec--CceeEEEEecceEE-------------EEEecCC---c---------- Confidence 999999999999954443333333333221 11111222221111 1111111 0 Q ss_pred ccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCC Q lcl|Aclame:pro 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDD 303 (508) Q Consensus 225 ~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~ 303 (508) |. .....-++++++|++.| .|+... .+.|+|+|..+++|||+||...|+..+.++ .+-+..++....+..+. T Consensus 193 ~~--~~~~~~h~~g~vPvv~f----~n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~ 265 (479) T protein:vir:99 193 FI--YRETVSHDYGHIPFVRY----VNVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGA 265 (479) T ss_pred ee--eccccccCCCCcceEEe----ecCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCccccc Confidence 00 00111245566666544 555544 568999999999999999999999999886 44554454321111111 Q ss_pred CCCcc-CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 304 EHKPT-FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 304 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) .+... ......... ... +++..+..++ +..++++.+.++.++++|...+++++..||+. +..||.+++.++.. T Consensus 266 ~~~~~~~~~~~~~i~--~~~-~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~--~n~Sg~Al~~~~~~ 339 (479) T protein:vir:99 266 NADQEKMRFAQESML--ISQ-NEKASFGAIP-AAPLDGLLNAYKESLLEFLALAQLPPHIAGQI--VNVAADALAAGTRQ 339 (479) T ss_pred ccchhccccccccce--eec-CCCceEEEec-ccchHHHHHHHHHHHHHHhccCCCCHHHcccc--cchHHHHHHHHHHH Confidence 11111 111111111 111 2222233333 34579999999999999999999999999864 34789999999999 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) +..++..+++.|..+|+++++.++.+... ......+.+++.|.+..+.|..+.++.+.+++++|++| T Consensus 340 l~~ka~~~~~~f~~al~~~~~l~~~~~~~-------------~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is 406 (479) T protein:vir:99 340 TMQKLFEKQATWKASHNQTMRLVNKIEGR-------------TEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIP 406 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCC Confidence 99999999999999999999998765321 11223467899999999999999999999999999999 Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcc------CCCCCCcccccCCCCC------------CC Q lcl|Aclame:pro 463 KQTFLQRNYGMTDEQAAEELAKIQSEAP------TDTFEGGRSAILNGGD------------GE 508 (508) Q Consensus 463 ~et~l~~~~~~~deea~~e~~ri~~E~~------~~~~~~~~~~~~~~~~------------g~ 508 (508) .+|++..+||+|+++++++.++.+++++ ......+.....++.+ |+ T Consensus 407 ~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (479) T protein:vir:99 407 AEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKTGE 470 (479) T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCCcc Confidence 9999999999999876544322222211 0000001011111111 11 No 60 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=1.3e-43 Score=255.66 Aligned_cols=431 Identities=11% Similarity=0.015 Sum_probs=273.7 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAAR 82 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~ 82 (508) |=+--+.++++.... -.....++++..+||.|+|+............+..++.+|||++||+ T Consensus 1 ~~~~~~~~i~~l~~~------------------~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd 62 (441) T protein:vir:80 1 MNSDELALIEGMYDR------------------IQRLSSWHCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVD 62 (441) T ss_pred CCccHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHH Confidence 111111111111111 01234578888999999987433222222233456778899999999 Q ss_pred HHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEEEEcC Q lcl|Aclame:pro 83 RIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPLQSNT 161 (508) Q Consensus 83 ~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi~~d~ 161 (508) ..|+++. +..|++.++ +.|+++++.|+|...+.+++..++.+|.+|+.+|.|+ |.+++.+++|.+++|++.+. T Consensus 63 ~~~~~l~--~~g~~~~d~----~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~ 136 (441) T protein:vir:80 63 ALEERLD--WLGWTNGDG----YGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSAD 136 (441) T ss_pred HHHhhhc--cccccCCCh----HHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCC Confidence 9999996 456776553 3477888889999999999999999999999999974 78999999999999985444 Q ss_pred CCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcce Q lcl|Aclame:pro 162 NDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPL 241 (508) Q Consensus 162 ~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~ 241 (508) .+...++++. +...+ ++ .+..+.|. .+..++ |..... |. +.... ..-++++++| T Consensus 137 ~~~~~~~~~~-~~~~~--~~--~~~~~vy~--~~~~~~-----~~~~~~---~~---~~~~~--------~~~~~~g~vP 190 (441) T protein:vir:80 137 GSRLDAGLVV-QQTCD--PE--VVEAELLL--PDVIVQ-----VERRGS---RE---WVEVD--------RIPNVLGAVP 190 (441) T ss_pred CCceeEEEEE-EEEec--Cc--eEEEEEEe--cCeEEE-----EEEcCC---cc---eeecc--------ccccCCCcee Confidence 4333333332 22221 11 23344443 211211 111111 10 00000 0113444444 Q ss_pred EEEecCCccccccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeee Q lcl|Aclame:pro 242 FAYFKTPGANNINIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGV 319 (508) Q Consensus 242 f~~~~~~~~n~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (508) ++ |++|+.....|+|.|++.. +++|||+||.++|++.+..+ .+-+.+++.. + ..+......+......+..+ T Consensus 191 vv----~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G-~-~~~~~~~~~~~~~~~~i~~~ 264 (441) T protein:vir:80 191 LV----PIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTG-V-SADEFSQPGWVLSMASVWAV 264 (441) T ss_pred EE----EeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeec-C-CccccccchhhhcccccccC Confidence 43 4567888888999999975 89999999999999999887 4555555421 1 00111111111111122233 Q ss_pred cCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHH Q lcl|Aclame:pro 320 LSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAI 398 (508) Q Consensus 320 ~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al 398 (508) ..+ .++.++++.+. +-..+.+++.++.+++.|...+++++..|+..+.+..||.+++.+...+..++..+++.|+.+| T Consensus 265 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 343 (441) T protein:vir:80 265 DKD-DDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGW 343 (441) T ss_pred CCC-CCCCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 322 23334555443 2457899999999999999999999999998777778999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCC--CHHHHHHhcCCCCHH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGAL--SKQTFLQRNYGMTDE 476 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~--s~et~l~~~~~~~de 476 (508) +++++.++.+.... +........+++.|.++++.|..++++.+.+++++|++ |.++++..+ |++++ T Consensus 344 ~~~~~l~~~~~~~~-----------~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l-~~~~~ 411 (441) T protein:vir:80 344 LSVGFLAAKALDSR-----------VDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEML-GLDDV 411 (441) T ss_pred HHHHHHHHHHhcCC-----------CcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhC-CCCHH Confidence 99999888764321 11112235788999999999999999999999999964 677777655 56666 Q ss_pred HHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 477 QAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 477 ea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +.+++.+ .++|+.... ....+...++ T Consensus 412 e~~~~~~-e~~e~~~~~-----~~~~~~~~~~ 437 (441) T protein:vir:80 412 QVEAVMR-HRAESSDPL-----AVLAGAISRQ 437 (441) T ss_pred HHHHHHH-HHHHHHHHH-----HHHhhhhhcc Confidence 6654333 333322110 0011111111 No 61 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=3.4e-43 Score=253.39 Aligned_cols=435 Identities=13% Similarity=0.109 Sum_probs=272.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ..+++++.+.+ .....++....+||.|+++............+.+++.+|||++| T Consensus 10 ~~~i~~L~~~~-------------------------~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~~~i 64 (488) T protein:vir:23 10 EKLRDQLLDAF-------------------------ENKQNELKSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYPRTY 64 (488) T ss_pred HHHHHHHHHHH-------------------------HHHHHHHHHHHHHHhcccchhhcCcccchhhhhhhhhcchHHHH Confidence 22222111110 11245778888999999974322111122333556788999999 Q ss_pred HHHHHHhhhcCcceEe--------eCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---------CCe Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIH--------VKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---------GNH 143 (508) Q Consensus 81 v~~~A~ll~~e~~~i~--------~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---------~~~ 143 (508) |+.+|++|+.+.+.+. ..+++..++.|+++++.|+|.....+++..|+.+|.+|+.+|.. .+. T Consensus 65 vd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~ 144 (488) T protein:vir:23 65 VDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEV 144 (488) T ss_pred HHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCc Confidence 9999998865543321 12334456789999999999999999999999999999987753 356 Q ss_pred eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccc Q lcl|Aclame:pro 144 IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLP 223 (508) Q Consensus 144 ~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~ 223 (508) ++|.+++|.+++|++.+..+.. ..+++.++..+ ++ .+++.++|+ .+..|+ +++.... ..+ T Consensus 145 ~~i~~~~p~~~~~~~d~~~~~~-~~~~~~~~~~~--~~-~~~~~~~y~--~~~~~~----~~~~~~~----~~~------ 204 (488) T protein:vir:23 145 PLIRVEPPTALYAEVDPRTRKV-LYAIRAIYGAD--GN-EIVSATLYL--PDTTMT----WLRAEGE----WEA------ 204 (488) T ss_pred ceEEEeccceeEEEEecCCCce-EEEEEEEEecC--CC-cEEEEEEEe--cCcEEE----EEecCCc----eEe------ Confidence 7899999999999965433322 22222333222 22 234445543 222222 1221111 000 Q ss_pred cccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhh-hHHHHHHHHHHHHHHHHHHHHh-ccceeee----chH Q lcl|Aclame:pro 224 VYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVD-NAKHVLDDINDTHDQFIWEIRL-GQKHIAV----QPG 297 (508) Q Consensus 224 ~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~~-~~~~i~v----~~~ 297 (508) ....-++++++|++ |+.|+.....++|+|++. .+++|+|+||.++|++.+.++. +-+..+| +.. T Consensus 205 ------~~~~~h~~g~vPvv----~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~ 274 (488) T protein:vir:23 205 ------PTSTPHGLEMVPVI----PISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEE 274 (488) T ss_pred ------ccccccCCCCcceE----EeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCccc Confidence 01112455666654 456777778899999998 4799999999999999998763 4443333 111 Q ss_pred HhcCCCCCCccCCcccceEeeec-CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 298 MLRFDDEHKPTFDTEQNVYVGVL-SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) ....++.+...+..... .+. ..+++...+..++ ....+.++..++.++++|...+++++..||....+..||.++ T Consensus 275 ~~~~~~~~~~~~~~~~~---~v~~~~~g~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al 350 (488) T protein:vir:23 275 LGINAETGQRMFDAYMA---RILAFEGGEGAHAEQFS-AAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAI 350 (488) T ss_pred ccccccccchhhhhhhh---hhccCCCCCCceeEecC-CCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHH Confidence 11111222222221111 111 1122222343333 356799999999999999999999999998877777799999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) ++.++.+..++..+++.|..+|+++++.++.+.... ........+.+.|.++.+.|..+.++.+.+++ T Consensus 351 ~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~------------~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~ 418 (488) T protein:vir:23 351 KAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGG------------DIPTEYYRMETVWRDPSTPTYAAKADAAAKLF 418 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CcchhhccceEEecCCCCCCHHHHHHHHHHHH Confidence 999999999999999999999999999998764321 11123356889999999999999999999999 Q ss_pred hCC--CCCHHHHHHhcCCCCHHHHHHHHHHHHHhcc------------CCCCCC-cccccCCC-CCCC Q lcl|Aclame:pro 457 AIG--ALSKQTFLQRNYGMTDEQAAEELAKIQSEAP------------TDTFEG-GRSAILNG-GDGE 508 (508) Q Consensus 457 ~~G--i~s~et~l~~~~~~~deea~~e~~ri~~E~~------------~~~~~~-~~~~~~~~-~~g~ 508 (508) ++| ++|.++++..++.++++ .++++++++++. ....++ ......++ .+.| T Consensus 419 ~~g~~~~s~et~~~~l~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 484 (488) T protein:vir:23 419 ANGAGLIPRERGWVDMGYTIVE--REQMRQWLEQDQKQGLGLIGSLYGASTPEGKPGEAPVGEPPAPE 484 (488) T ss_pred hcccccCCHHHHHHhCCCCchH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCC Confidence 865 89999999988765443 233444332210 000111 00100111 1111 No 62 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=1.2e-43 Score=255.95 Aligned_cols=445 Identities=10% Similarity=0.080 Sum_probs=274.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc--cCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI--HYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~--~~~~~~~~~~~~~~~~~n~~~ 78 (508) |.--. ...-++....+. .....+++...+||.|+|+.. +.......+...+++++|||+ T Consensus 1 ~~~~t--------------~~~~~~~l~~~~-----~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) T protein:vir:10 1 MTAST--------------PAEWLPVLTKRI-----DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) T ss_pred CCCCC--------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHH Confidence 11110 001111111100 124567888899999998742 111112222234567899999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPL 157 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi 157 (508) +||+.+|+|++++|+++.+.++...++.++++++.|+|.....+++..|+.+|.+|..+|.++ |.++|.+++|.+++|+ T Consensus 62 ~ivd~~~~~l~~~~~~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i 141 (456) T protein:vir:10 62 MVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHHHHHHhhhccCCeecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEE Confidence 999999999999999988765555667799999999999999999999999999999999874 7899999999999998 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +.+..+..-.+++..+. ... +...|. .++.. ....+|+.....+...... ..+.. ...+... ...-+++ T Consensus 142 ~d~~~~~~~~~~i~~~~-~~d-~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~--~~~~~~~ 210 (456) T protein:vir:10 142 VDPLQPWRIRAAMRWWR-DLD-AESDFA-IVWSG-DGWQKFARPCFVQSSSRRR----LVTRI-SDSWVPV--GDAVVTG 210 (456) T ss_pred EcCCCCcceEEEEEEEE-ecC-CceeEE-EEEec-cceeEEEEEEEEeecccce----eeeec-CCceeec--cccCCCC Confidence 54433322222222222 221 222221 12211 0001122211122111110 00000 0000000 0001234 Q ss_pred CcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech---HHhcCCCCCCccCCcc- Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP---GMLRFDDEHKPTFDTE- 312 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~---~~~~~~~~~~~~~~~~- 312 (508) ..|++.++ || +.|+|+|..++++||++|.+.|+.++..+. +-+..++.. .....+..|...-..+ T Consensus 211 ~~~pvv~~-----~N-----~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) T protein:vir:10 211 SPPPVVVY-----QN-----PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) T ss_pred CceeEEEe-----cC-----CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhh Confidence 45555443 22 458999999999999999999999887653 333333311 1111122222211000 Q ss_pred cceEee-ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 313 QNVYVG-VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 313 ~~~~~~-~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) .....+ +-.. +.+..+..++ .-..+.+.+.++.++++|...+++++..||...+ +.||.++++++..+.+++..++ T Consensus 281 ~~~~~~~~~~~-~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~Sg~Ai~~~~~~l~~k~~~~~ 357 (456) T protein:vir:10 281 FEAAPGALWEL-PPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRL 357 (456) T ss_pred hhhhccccccC-CCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhccccc-ChHHHHHHHHHHHHHHHHHHHH Confidence 001111 1111 1223344443 3457899999999999999999999999987553 4589999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcC Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNY 471 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~ 471 (508) +.|..+|+++++.++.+.. ......+++.|.+..+.|..+.++.+.+++++|++|.++++. .+ T Consensus 358 ~~f~~~l~~~~rl~~~~~g----------------~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~-~l 420 (456) T protein:vir:10 358 SIAKIGLEAILVKALQIEG----------------ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN-IL 420 (456) T ss_pred HHHHHHHHHHHHHHHHhcC----------------CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHh-hC Confidence 9999999999998875521 112346889999999999999999999999999999988765 67 Q ss_pred CCCHHHH-HHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 472 GMTDEQA-AEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 472 ~~~deea-~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |++++++ +.|++|+++|+........+ .++.+|. T Consensus 421 g~~~~~i~~~e~er~~~e~~~~~~~~~~---~~~~~~~ 455 (456) T protein:vir:10 421 NYNADQIKQDDLDRAREQITLFAGNPVQ---RPQEDGS 455 (456) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhh---cCCCCCC Confidence 8988775 45778887775321111111 1122222 No 63 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=1.2e-43 Score=255.95 Aligned_cols=445 Identities=10% Similarity=0.080 Sum_probs=274.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc--cCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI--HYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~--~~~~~~~~~~~~~~~~~n~~~ 78 (508) |.--. ...-++....+. .....+++...+||.|+|+.. +.......+...+++++|||+ T Consensus 1 ~~~~t--------------~~~~~~~l~~~~-----~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) T protein:vir:10 1 MTAST--------------PAEWLPVLTKRI-----DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) T ss_pred CCCCC--------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHH Confidence 11110 001111111100 124567888899999998742 111112222234567899999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPL 157 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~~Pi 157 (508) +||+.+|+|++++|+++.+.++...++.++++++.|+|.....+++..|+.+|.+|..+|.++ |.++|.+++|.+++|+ T Consensus 62 ~ivd~~~~~l~~~~~~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i 141 (456) T protein:vir:10 62 MVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHHHHHHhhhccCCeecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEE Confidence 999999999999999988765555667799999999999999999999999999999999874 7899999999999998 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +.+..+..-.+++..+. ... +...|. .++.. ....+|+.....+...... ..+.. ...+... ...-+++ T Consensus 142 ~d~~~~~~~~~~i~~~~-~~d-~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~--~~~~~~~ 210 (456) T protein:vir:10 142 VDPLQPWRIRAAMRWWR-DLD-AESDFA-IVWSG-DGWQKFARPCFVQSSSRRR----LVTRI-SDSWVPV--GDAVVTG 210 (456) T ss_pred EcCCCCcceEEEEEEEE-ecC-CceeEE-EEEec-cceeEEEEEEEEeecccce----eeeec-CCceeec--cccCCCC Confidence 54433322222222222 221 222221 12211 0001122211122111110 00000 0000000 0001234 Q ss_pred CcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech---HHhcCCCCCCccCCcc- Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP---GMLRFDDEHKPTFDTE- 312 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~---~~~~~~~~~~~~~~~~- 312 (508) ..|++.++ || +.|+|+|..++++||++|.+.|+.++..+. +-+..++.. .....+..|...-..+ T Consensus 211 ~~~pvv~~-----~N-----~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) T protein:vir:10 211 SPPPVVVY-----QN-----PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) T ss_pred CceeEEEe-----cC-----CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhh Confidence 45555443 22 458999999999999999999999887653 333333311 1111122222211000 Q ss_pred cceEee-ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 313 QNVYVG-VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 313 ~~~~~~-~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) .....+ +-.. +.+..+..++ .-..+.+.+.++.++++|...+++++..||...+ +.||.++++++..+.+++..++ T Consensus 281 ~~~~~~~~~~~-~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~Sg~Ai~~~~~~l~~k~~~~~ 357 (456) T protein:vir:10 281 FEAAPGALWEL-PPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRL 357 (456) T ss_pred hhhhccccccC-CCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhccccc-ChHHHHHHHHHHHHHHHHHHHH Confidence 001111 1111 1223344443 3457899999999999999999999999987553 4589999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcC Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNY 471 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~ 471 (508) +.|..+|+++++.++.+.. ......+++.|.+..+.|..+.++.+.+++++|++|.++++. .+ T Consensus 358 ~~f~~~l~~~~rl~~~~~g----------------~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~-~l 420 (456) T protein:vir:10 358 SIAKIGLEAILVKALQIEG----------------ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN-IL 420 (456) T ss_pred HHHHHHHHHHHHHHHHhcC----------------CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHh-hC Confidence 9999999999998875521 112346889999999999999999999999999999988765 67 Q ss_pred CCCHHHH-HHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 472 GMTDEQA-AEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 472 ~~~deea-~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |++++++ +.|++|+++|+........+ .++.+|. T Consensus 421 g~~~~~i~~~e~er~~~e~~~~~~~~~~---~~~~~~~ 455 (456) T protein:vir:10 421 NYNADQIKQDDLDRAREQITLFAGNPVQ---RPQEDGS 455 (456) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhh---cCCCCCC Confidence 8988775 45778887775321111111 1122222 No 64 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=1.1e-40 Score=239.55 Aligned_cols=445 Identities=13% Similarity=0.090 Sum_probs=276.7 Q ss_pred CChHH---------------HHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CC Q lcl|Aclame:pro 1 MGLIQ---------------RIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DG 64 (508) Q Consensus 1 m~~~~---------------~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~ 64 (508) |.=|. --+.+++....+ =.....++.+..+||.|+++. .+... .. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~------------------~~~~~~r~~~l~~YY~G~~~i-~~~~~~~p 61 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQ------------------LVDRTPRNLLRASFYDGKYAI-RQIGNLIP 61 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHhccccc-hhcccccc Confidence 11100 000111000000 011345677778999999873 22211 11 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-C- Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-N- 142 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~- 142 (508) ...++.+..+|||+++|+.+|+++..+. |.+.+++..++.|+++++.|+|.....+++..|+.+|.+++.+|-++ + T Consensus 62 ~~~~~~~~v~n~~~~iVd~~a~rl~~~G--f~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~ 139 (504) T protein:vir:99 62 PEYLRTATVLGWSAKAVDTLARRCNLES--FVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGE 139 (504) T ss_pred HHHHHHhhccCcHHHHHHHHHhhhccce--eeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCC Confidence 1223445678999999999999998764 66666666677899999999999999999999999999999998864 3 Q ss_pred -eeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccc Q lcl|Aclame:pro 143 -HIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLST 221 (508) Q Consensus 143 -~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~ 221 (508) .+.|.+++|.+++.++.+..+...+++.+ +.. +. + ..++.+++|+ ...|.+....+ . |. T Consensus 140 ~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~-~~~-d~-~-g~~~~~~~y~-----~~~~~~~~~~~--~---~~------ 199 (504) T protein:vir:99 140 PDSLIHVKSAMQATGEWNSRRNAMDSLLSI-TSR-DA-E-GHPTGIALYE-----DGVTVTADMDD--D---GD------ 199 (504) T ss_pred ceeEEEEeccceeEEEEeCCCCceeEEEEE-EEe-cC-C-CeEEEEEEEc-----CCcEEEEEEcC--C---ce------ Confidence 46799999999998854433333333322 211 22 2 2345566654 22222211111 1 10 Q ss_pred cccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhh-hHHHHHHHHHHHHHHHHHHHH-hccceeee----c Q lcl|Aclame:pro 222 LPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVD-NAKHVLDDINDTHDQFIWEIR-LGQKHIAV----Q 295 (508) Q Consensus 222 ~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v----~ 295 (508) |.. +..-++...| .+|++|+.+...|+|.|.+. .+++|+|++|+++++.++..+ .+-+..++ + T Consensus 200 ---~~~---~~~~~~~gvP-----vV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~ 268 (504) T protein:vir:99 200 ---WHA---DVRTHKLGVP-----VEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADA 268 (504) T ss_pred ---eee---ccccCCCCcc-----eEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCc Confidence 100 0000111122 24677888888999999987 789999999999999988765 34444444 1 Q ss_pred hHHhcCCCCCCccCCcccceEeeecCCCC----CCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-c Q lcl|Aclame:pro 296 PGMLRFDDEHKPTFDTEQNVYVGVLSDDN----NGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-G 369 (508) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~ 369 (508) +.+...++.+...+.........+..+.. .+..++..|. .-..+.|.+.|+.++++|...+++++..||+.+. + T Consensus 269 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n 348 (504) T protein:vir:99 269 KNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRAN 348 (504) T ss_pred cccccccccccchhhhhhhhhhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhccccccc Confidence 11112233222222221111112222111 1223444332 2356889999999999999999999999997654 6 Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 370 VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 370 ~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) ..||.+++++...|..++..+++.|..+|+++++.++.+..... ........+.+.|.+..+.+..+.+ T Consensus 349 ~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~~-----------~~~~~~~~~~v~w~d~~~~s~a~~a 417 (504) T protein:vir:99 349 PTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNGLD-----------RIPPEWKTIDSKFRSPLYLSKAAQA 417 (504) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------ccccccccceeEecCCCccCHHHHH Confidence 78999999999999999999999999999999999887753211 1223345688999999999999999 Q ss_pred HHHHHHHhCCC--CCHHHHHHhcCCCCHHHHHHHHHHHHHhccCC---------CCCCcccccCCCCCCC Q lcl|Aclame:pro 450 EEDAKVLAIGA--LSKQTFLQRNYGMTDEQAAEELAKIQSEAPTD---------TFEGGRSAILNGGDGE 508 (508) Q Consensus 450 ~~~~~~~~~Gi--~s~et~l~~~~~~~deea~~e~~ri~~E~~~~---------~~~~~~~~~~~~~~g~ 508 (508) +.+.+++++|. ++..+.+....|++++|++++.++.++++... ....+..+..+...|| T Consensus 418 Da~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 487 (504) T protein:vir:99 418 DAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGE 487 (504) T ss_pred HHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCC Confidence 99999998884 44555566666999998877665555443211 1111111111111122 No 65 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=4.2e-39 Score=230.99 Aligned_cols=407 Identities=10% Similarity=0.025 Sum_probs=252.2 Q ss_pred cccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 56 YIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) .++.....--+.-+++.++|||++||+.+++++..+ .|++.+.+ .++.+++++++|+|.....+++..|+.+|.+|+ T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~--gf~~~d~~-~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~ 77 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLAL--GVTGPDGE-PDTRASRWWQANRLDSRQKLVWRMAMAQSAGYM 77 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccC--ceecCCCc-hHHHHHHHHHhcChhHHHHHHHHHHhhcCceEE Confidence 222222111122233456799999999999998765 57776544 577899999999999999999999999999999 Q ss_pred EEEEeCC--------eeEEEEEcCCeEEEEEEcCC-CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEe Q lcl|Aclame:pro 136 RPYIDGN--------HIKIAWVRADQFYPLQSNTN-DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYK 206 (508) Q Consensus 136 ~~~~d~~--------~~~i~~v~a~~~~Pi~~d~~-~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~ 206 (508) .+|.+++ .+.|.+++|.++++++.+.. ++..++. .+.. +. .+..+..+.++. + .+.. .++ T Consensus 78 ~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~--~~~~-~~-~~~~~~~~~~~~--~--~~~~---~~~ 146 (434) T protein:vir:98 78 LVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLK--VWHN-DI-DGFGYARVFFDD--T--SFPY---RTR 146 (434) T ss_pred EEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEE--EEEe-cc-CCceEEEEEEeC--c--EEEE---EEe Confidence 9998642 46799999999999854432 3333322 2222 21 222232222211 1 1111 111 Q ss_pred cCCccccCccccc-cccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 207 SDSPDIVGNQVPL-STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI 285 (508) Q Consensus 207 ~~~~~~lG~~v~l-~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~ 285 (508) .... ..... .....+....+....+++++++++ |++||.+.+. .|+|+|..+++|||+||.++|+..+.. T Consensus 147 ~~~~----~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv----~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~ 217 (434) T protein:vir:98 147 ERTG----ARLPWGPDSWVYTGTADSGDVHDLGGMQLV----EFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAAS 217 (434) T ss_pred eccc----cccccccccceecccccccccCCCCccceE----EeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHH Confidence 1110 00000 000011111222222444444444 4566665433 599999999999999999999999988 Q ss_pred H-hccceeeechHHhc--CCCCCCccCCcccceEe----eecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 286 R-LGQKHIAVQPGMLR--FDDEHKPTFDTEQNVYV----GVLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIG 357 (508) Q Consensus 286 ~-~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g 357 (508) + .+.+..++...-+. .++.++..- ..+.+. ++...++. .+++.|. ....++|...|+.++++|...++ T Consensus 218 ~~~a~p~~~i~G~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~--~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~ 293 (434) T protein:vir:98 218 RFSGFRQKWIKGHKFAKRTDPATGMTV--VDQPFVPSPSAVWASEGE--NTQFGQLDATDLSGFLKEHASDVRDMLTISQ 293 (434) T ss_pred HHhcchhhhhcCCCcccccccccccch--hhhhhhccccccccCCCC--CceEEEecCcchHHHHHHHHHHHHHHhcccC Confidence 6 55555555321111 111111110 001111 11112222 2333332 34678999999999999999999 Q ss_pred CCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 358 LSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 358 ~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) +++..|+. ..+..||.+++++...|..++..+++.|+.+|+++++.++.+.. .......+.+.| T Consensus 294 ~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g---------------~~~~~~~~~v~w 357 (434) T protein:vir:98 294 TPTYLYAT-DLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAG---------------VPEDYTEAEVRW 357 (434) T ss_pred CCHHHhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CChhheeeeEEe Confidence 99999985 34567899999999999999999999999999999998775521 112345789999 Q ss_pred CCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhc--------cCCCCCCc-ccccCCCCCC Q lcl|Aclame:pro 438 DDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEA--------PTDTFEGG-RSAILNGGDG 507 (508) Q Consensus 438 ~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~--------~~~~~~~~-~~~~~~~~~g 507 (508) .++.+.|..++++.+.+++++|+ |.++.+.. .|++++|.+++.++..++. +..++..+ ..+-.+..|| T Consensus 358 ~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~-lg~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 358 ANPAHVTMAVKADAATKLKSIGY-PLDVIAEE-LDESPARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred cCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 99999999999999999998885 77766554 5678877766665544431 11111111 1111222344 No 66 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=1e-36 Score=217.93 Aligned_cols=449 Identities=12% Similarity=0.049 Sum_probs=273.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) =||=+--..++...... + .....++....+||.|+++.-.--..-....+..+..+|+|+++ T Consensus 10 ~gl~~~~~~~~~~L~~~---------~---------~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw~~~~ 71 (474) T protein:vir:81 10 PSLSNDENALINGLLAQ---------I---------ENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNLGLVLGWTGKA 71 (474) T ss_pred CCCChhHHHHHHHHHHH---------H---------HHHhhHHHHHHHHhccCCChhhccccccHHHHHHHhhcChHHHH Confidence 01111111111111111 0 01234677778999999874221111111112334678999999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC---CeeEEEEEcCCeEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG---NHIKIAWVRADQFYPL 157 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~---~~~~i~~v~a~~~~Pi 157 (508) |+.+|+.+.-+. |.+++.+..+..++++++.|+|.....+++..|+.+|.+|+.++.++ +.+.|.+++|.+++.+ T Consensus 72 Vd~~a~rl~~~G--f~~~d~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~ 149 (474) T protein:vir:81 72 VDALARRCNLEG--FVWPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGE 149 (474) T ss_pred HHHHHhhhcccc--eECCCCCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEE Confidence 999999998775 55555554556789999999999999999999999999999988743 3588999999999988 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +.+..+...+++. .+.... ++ ..+...+|. .+..++ +++.... .. |. .+..-+++ T Consensus 150 ~D~~~~~~~~al~-~~~~~~-~g--~~~~~~ly~--~~~~~~----~~~~~~~----~~--------w~---~~~~~~~~ 204 (474) T protein:vir:81 150 WNRRRRGLNNLLS-IIDKDK-EG--KVLSLALYL--DNETVT----AQRDKAT----LK--------WQ---VDRDEHVY 204 (474) T ss_pred EeCCCCcceeeeE-EEEEcC-CC--cEEEEEEEe--CCcEEE----EEEcCcc----ce--------ee---eccCCCCC Confidence 5443333333333 222222 11 122222222 111111 2221110 00 00 00001222 Q ss_pred CcceEEEecCCccccccCCCcCCcchhh-hHHHHHHHHHHHHHHHHHHHH-hccceeeec----hHHhcCCCCCCccCCc Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVD-NAKHVLDDINDTHDQFIWEIR-LGQKHIAVQ----PGMLRFDDEHKPTFDT 311 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~----~~~~~~~~~~~~~~~~ 311 (508) +.| .+|++|+.+...|+|+|.+. .+++++|++|+++++.....+ .+-|..++. +.+.+.++.....|.. T Consensus 205 gvP-----vV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~ 279 (474) T protein:vir:81 205 GVP-----AQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEA 279 (474) T ss_pred Ccc-----eEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhh Confidence 222 25778998888999999985 899999999999999988765 344444441 1111122222222222 Q ss_pred ccceEeeecCCCCCC----CcceEee-ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccc-cccchHHHHHHHHHHHHh Q lcl|Aclame:pro 312 EQNVYVGVLSDDNNG----LGVKDMT-TPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN-DGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 312 ~~~~~~~~~~~~~~~----~~i~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~-~~~~TAtei~~~~~~l~~ 385 (508) .......+..+++.. .+++..| ++-..+.|.+.++.++++|...+|++++.||+.+ .+..||.++.+.+..+.. T Consensus 280 ~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~ 359 (474) T protein:vir:81 280 RLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIA 359 (474) T ss_pred hHHHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHH Confidence 111112233322211 1233333 2345788999999999999999999999999765 566889999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC-CCCHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG-ALSKQ 464 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G-i~s~e 464 (508) ++..+++.|..+|+++++.++.+...... .........+.+.|.|....+..+.++.+.+++++| .++.+ T Consensus 360 kae~k~~~fg~~l~~~~rla~~i~~~~~~---------~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~ 430 (474) T protein:vir:81 360 EAEGAVDDFTPALRKAFIRALAMKNKVAI---------DEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAET 430 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc---------cccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcH Confidence 99999999999999999998877532110 112233457889999999999999999999999987 34444 Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 465 t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..+...+|+|++|++++..+.+++++...-..-....-+++..+ T Consensus 431 ~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 431 EVGLELIGLTPQQARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 44556789999988776655555543221111111111111222 No 67 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=1e-33 Score=201.45 Aligned_cols=399 Identities=11% Similarity=0.100 Sum_probs=260.9 Q ss_pred ccCCHHHHHHHHHHHHHhcCCCcc--ccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHH Q lcl|Aclame:pro 33 ISIDPDEYVRIQTDLDYYSDKLQY--IHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDV 110 (508) Q Consensus 33 i~~~~~~~~~i~~~~~~Y~g~~~~--~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~ 110 (508) +++- ..+.....+||.|+|+. +........ +.+.+..+|+|+++|+.+|+.+.-+ .|+..| + .++++ T Consensus 1 l~~~---~~r~~~~~~yY~g~~~~~~~~~~~p~~~-~~~~~~v~nw~~~~Vds~a~rl~~~--Gf~~~d-~----~l~~i 69 (410) T protein:vir:95 1 MNLY---QSRVNLRYKHYAMQHYEAPTGITIPAHI-RAKYQAVLGWAAKGVDSLADRLIFR--AFANDD-F----NVTEI 69 (410) T ss_pred CCcc---hhhHHHHHHHhcCCCCccccchhccHHH-HhHHHhhcchhHHHHHHhHhhhccc--cccCCC-c----hHHHH Confidence 2222 45677788999999874 221111111 1233566799999999999988766 455433 2 26778 Q ss_pred HHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEE Q lcl|Aclame:pro 111 LEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEF 189 (508) Q Consensus 111 l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~ 189 (508) ++.|+|.....+++..|+.+|.+++.++-+ ++++.|.+++|.+++.++.+..+...+++ ++...+. + ...+...+ T Consensus 70 ~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al--~~~~~~~-~-~~~~~~~~ 145 (410) T protein:vir:95 70 FDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVEGY--AVLARDD-Y-NRPTLEAY 145 (410) T ss_pred HhhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCceEEEE--EEEEecC-C-CeEEEEEE Confidence 888999999999999999999999998876 47799999999999987543333322222 2221121 1 12333333 Q ss_pred EEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhh-hHH Q lcl|Aclame:pro 190 HQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVD-NAK 268 (508) Q Consensus 190 h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~-~~~ 268 (508) |+ ++..+++ ..... . | ...++++.+++ +|++|+.+...|+|+|.+. .++ T Consensus 146 ~~--~~~~~~~-----~~~~~---~----------~------~~~~~~g~vPv----V~f~n~~~l~~~~G~s~I~~~v~ 195 (410) T protein:vir:95 146 FE--PNATHFI-----PKDGE---P----------Y------SVTNETGIPLL----VPVIHRPDAVRPFGRSRITRAGM 195 (410) T ss_pred Ee--CCcEEEE-----eeCCc---c----------c------cccCCCCCcce----EEecccccCCccCCccccchhHH Confidence 32 2222221 11110 0 1 01134444444 3667888888999999885 799 Q ss_pred HHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee-ccCCHHHHHHHHH Q lcl|Aclame:pro 269 HVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT-TPIRTVQYKDAID 346 (508) Q Consensus 269 ~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~dir~e~~~~~l~ 346 (508) +++|++|+++++.....+ .+-|..++.. ++.++++...+.........+..++ ++.+++..| +.-..+.|.+.++ T Consensus 196 ~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~d~d~~~~~~~~~~~~~i~~~~~~~-~~~~~~v~q~~~~~l~~~~~~l~ 272 (410) T protein:vir:95 196 YYQKYAKRTLERADITAEFYSWPQKYILG--LDPDAEPMEKWKATVSSLLTISSSD-KGVKPSVGQFTTASMSPFTEQLR 272 (410) T ss_pred HHHHHHHHHHHHHHHHHHHhcchhheeec--cCCCCCcCchhhhhhhhheeccCCC-CCCcceEEecCCCChHHHHHHHH Confidence 999999999999988765 3444444411 1223333333333222223333332 233444433 2345689999999 Q ss_pred HHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc Q lcl|Aclame:pro 347 HFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDS 426 (508) Q Consensus 347 ~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~ 426 (508) .++++|...+++++..||.......||.++.+..+.+..++..+++.|..+|+++++.++.+.... ... T Consensus 273 ~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~-----------~~~ 341 (410) T protein:vir:95 273 TAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEF-----------RYT 341 (410) T ss_pred HHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCc Confidence 999999999999999999877767889999999999999999999999999999999988775321 112 Q ss_pred ccCcceEEEEeC---CCccCCHHHHHHHHHHHHhC--CCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCC Q lcl|Aclame:pro 427 ASQPLDIECHFD---DGVFVNKDKQLEEDAKVLAI--GALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFE 495 (508) Q Consensus 427 ~~~~~ei~i~f~---d~i~~d~~~e~~~~~~~~~~--Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~ 495 (508) .....++.+.|. |.-..+..+.++.+.+++++ |+++.++.+... |+++++..+.+.+ |+ .+..+ T Consensus 342 ~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~l-g~~~~~~~~~~~~---e~-~~~g~ 410 (410) T protein:vir:95 342 RSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLT-GIAGDMSAKPVVS---EG-GSNGE 410 (410) T ss_pred ccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhc-CCChHHHHHHHHH---HH-HhCCC Confidence 233456888897 66666778888899999987 798999877766 6776543222211 11 11111 No 68 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=6.2e-34 Score=202.64 Aligned_cols=409 Identities=11% Similarity=0.101 Sum_probs=265.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCc-cCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQ-ASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~~~~~~~~~~~~n~~~~ 79 (508) |. .+.++...... .....+.....+||.|+|+....- .....-+...+..+|||++ T Consensus 1 m~------------------~~~i~~L~~~~-----~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~ 57 (422) T protein:vir:97 1 MN------------------YMGMGYLRRKL-----ALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAK 57 (422) T ss_pred CC------------------hHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHH Confidence 11 11222221100 123457788889999998742211 1111111223445699999 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--CeeEEEEEcCCeEEEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--NHIKIAWVRADQFYPL 157 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~~i~~v~a~~~~Pi 157 (508) +|+.+|+.+.-+ .|++.+. .++++++.|+|.....+++..|+.+|.+++.++.++ |.+.|.+++|.+.+.+ T Consensus 58 ~Vd~~a~rl~~~--Gf~~~d~-----~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i 130 (422) T protein:vir:97 58 GVDSLADRIIFR--EFTNDDF-----NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGI 130 (422) T ss_pred HHHHHHhccccc--eeeCCch-----hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEE Confidence 999999977665 4665432 267788889999999999999999999999999864 6789999999999988 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +.+..+...+++.. +.. +..+.. +...+ +.+. .+ ..|+... .. + ..-++. T Consensus 131 ~D~~~~~~~~a~~~-~~~-~~~~~~--~~~~~--~~~~---~~--~~~~~~~-----~~--------~------~~~~~~ 180 (422) T protein:vir:97 131 LDPTTFLLTEGYAI-LES-DSNGNP--TLEAY--FTDK---DI--WYYPKKG-----KP--------Y------NIKNPT 180 (422) T ss_pred EeCCCCcceeeEEE-EEe-cCCCcE--EEEEE--EcCc---eE--EEEcCCC-----cc--------c------cccCCC Confidence 54333433344332 222 222222 22112 2221 11 1222211 10 0 011334 Q ss_pred CcceEEEecCCccccccCCCcCCcchh-hhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCC--ccCCccc Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVV-DNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHK--PTFDTEQ 313 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~--~~~~~~~ 313 (508) +++++ +|++|+.+...|+|.|.+ ..+++++|++|+++++.....+ .+-|..++ +..+.++. ..+.... T Consensus 181 g~vPv----v~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i----~G~d~d~~~~~~~~~~~ 252 (422) T protein:vir:97 181 GHPLL----VPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYV----LGMDPDAKPMEKWRATV 252 (422) T ss_pred CCcce----EEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhh----cccCcccccCchhhhhh Confidence 44443 467788888899999998 5799999999999999988765 34444444 22333332 2232222 Q ss_pred ceEeeecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 314 ~~~~~~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) .+...+..++ ++.+++.-|. .-..+.|.+.++.+++++...+++++..||.......||.++++....+..++..+++ T Consensus 253 ~~i~~~~~de-~~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~ 331 (422) T protein:vir:97 253 STLLEISKDE-DGDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQR 331 (422) T ss_pred hhhhccCCCC-CCCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHH Confidence 2222333332 2334444332 2356889999999999999999999999999887678899999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC---HHHHHHHHHHHHhC--CCCCHHHHH Q lcl|Aclame:pro 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN---KDKQLEEDAKVLAI--GALSKQTFL 467 (508) Q Consensus 393 ~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d---~~~e~~~~~~~~~~--Gi~s~et~l 467 (508) .|..+|+++++.++.+..... .....-.++.+.|....+.| ..+.++.+.+++++ |+++.++.+ T Consensus 332 ~fg~~l~~~~rla~~~~~~~~-----------~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~ 400 (422) T protein:vir:97 332 SFSSGFLNVAYIAVCLRDEFP-----------YLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIR 400 (422) T ss_pred HHHHHHHHHHHHHHHHhcCCc-----------ccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHH Confidence 999999999999887753211 11122346889998666666 45556677888888 799999888 Q ss_pred HhcCCCCHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 468 QRNYGMTDEQAAEELAKIQSEAPTD 492 (508) Q Consensus 468 ~~~~~~~deea~~e~~ri~~E~~~~ 492 (508) ... |+++ ++.+.+++.++++.. T Consensus 401 ~~l-g~~~--~~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 401 DLT-GVKG--ADKPIPAITEVTTDG 422 (422) T ss_pred HHc-CCCc--hhHHHHHHHhhhccC Confidence 765 6765 567777777765533 No 69 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=4.1e-32 Score=192.63 Aligned_cols=398 Identities=11% Similarity=0.082 Sum_probs=251.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc--CCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA--SDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--~~~~~~~~~~~~~n~~~ 78 (508) |.. +-|..+. ..+. ....+..+..+||.|+|+. .+.. ....-..+.+..+|||+ T Consensus 1 ~~~-~~i~~L~-------------~~~~---------~~~~r~~~~~~yY~g~~~~-~~~~~~~p~~~~~~~~~v~nw~~ 56 (409) T protein:vir:16 1 MTE-KGIGYLR-------------FKLS---------VHKRRAEMRYEQYAMKHVD-RFKGITIPQALSQQYRSILGWCA 56 (409) T ss_pred CCH-HHHHHHH-------------HHHH---------HHhHHHHHHHHHHhccCch-hhcchhhhHHHHHHHhhhcChhH Confidence 211 0011111 1111 2346778888999999863 2211 11111123345679999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEEEEEcCCeEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKIAWVRADQFYPL 157 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i~~v~a~~~~Pi 157 (508) ++|+.+|+.+.-+ .|+..+ +.++++++.|+|.....+++..|+.+|.+++.++-+ +|++.|.+++|.+.+.+ T Consensus 57 ~iVds~a~rl~~~--Gf~~~d-----~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i 129 (409) T protein:vir:16 57 KGVDSLADRLVFR--EFENDD-----FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGI 129 (409) T ss_pred HHHHHhHhhcccc--cccCcc-----hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEE Confidence 9999999988655 455432 237788899999999999999999999999988876 47899999999999988 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) +.+..+...+++. .+.... .+ +-+...+|. .+ .. ...++.... +. ...+++ T Consensus 130 ~D~~~~~~~~a~~-~~~~d~-~~--~~~~~~~~~-~~-~~----~~~~~~~~~---~~----------------~~~~~~ 180 (409) T protein:vir:16 130 IDPITGLLTEGYA-VLERDE-NN--NVVLEAHFL-PD-RT----DYYYRDSRN---NI----------------SIANPT 180 (409) T ss_pred eecccccceeeeE-EEEecC-CC--ceEEEEEEe-cC-cE----EEEEecCcc---cc----------------ceecCC Confidence 5332232222222 222211 11 112222221 11 11 112221110 00 011333 Q ss_pred CcceEEEecCCccccccCCCcCCcchhh-hHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccce Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVD-NAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNV 315 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 315 (508) +++++ +|++|+.+...|+|+|.+. .+++++|++|+++++.....+ .+-|..++.. +..++++...|...... T Consensus 181 g~vPv----V~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~d~d~~~~~~~~~~~~~ 254 (409) T protein:vir:16 181 GNPLL----VPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTG--LSDDAEPMETWKATVSS 254 (409) T ss_pred CCcce----EEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEe--cCCCCCccchhhhhhhH Confidence 44443 4667888888999999985 699999999999999988765 3444444411 12222222223322222 Q ss_pred EeeecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 316 YVGVLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 316 ~~~~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) ...+..++ ++.+++.-|. .-..+.|.+.++.+++++...++++++.||.......||.++.+....+..++..+++.| T Consensus 255 i~~~~~d~-~g~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~f 333 (409) T protein:vir:16 255 MLQFTKDE-DGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSL 333 (409) T ss_pred hhccCCCC-CCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 22233222 2333443332 245689999999999999999999999999887767889999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC---HHHHHHHHHHHHhCC--CCCHHHHHHh Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN---KDKQLEEDAKVLAIG--ALSKQTFLQR 469 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d---~~~e~~~~~~~~~~G--i~s~et~l~~ 469 (508) ..+|+++++.++.+.... +........+.+.|.+..+.+ ..+.++.+.+++++| ++..++. .. T Consensus 334 g~~l~~~~rla~~~~~~~-----------~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~-~~ 401 (409) T protein:vir:16 334 GAGLLNVAYLAACLRDDV-----------PYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTI-RD 401 (409) T ss_pred HHHHHHHHHHHHHHhcCC-----------CccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHH-HH Confidence 999999999988774321 111222356889999776555 567778899999887 3333444 44 Q ss_pred cCCCCHHH Q lcl|Aclame:pro 470 NYGMTDEQ 477 (508) Q Consensus 470 ~~~~~dee 477 (508) ..|+|+.+ T Consensus 402 ~~g~~~~d 409 (409) T protein:vir:16 402 LTGIKGAE 409 (409) T ss_pred hccCCCCC Confidence 55888755 No 70 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=4e-32 Score=192.71 Aligned_cols=399 Identities=11% Similarity=0.061 Sum_probs=252.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc-CCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA-SDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~~n~~~~ 79 (508) |.. +-|..+. ..+. ....++.+..+||.|+|+.-..-. ....-..+.+..+|||++ T Consensus 1 ~~~-~~i~~L~-------------~~~~---------~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~ 57 (409) T protein:vir:94 1 MTE-KGIGYLR-------------FKLS---------VHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAK 57 (409) T ss_pred CCH-HHHHHHH-------------HHHH---------HHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHH Confidence 211 0011111 1111 134567788899999986422111 111111233566799999 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-CCeeEEEEEcCCeEEEEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-GNHIKIAWVRADQFYPLQ 158 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-~~~~~i~~v~a~~~~Pi~ 158 (508) +|+.+|+.+.-+ .|+..+ +.|+++++.|+|.....+++..|+.+|.+++.+|-+ +|+++|.+++|.+++-++ T Consensus 58 iVds~a~rl~~~--Gf~~~d-----~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~ 130 (409) T protein:vir:94 58 GVDSLADRLVFR--EFENDD-----FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGII 130 (409) T ss_pred HHHHhHhhcccC--cccCCc-----hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEE Confidence 999999987655 455432 237788899999999999999999999999999886 478999999999999774 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) .+..+...+ ...+...+.. ...+...+|. .+..+ .+++.... +.. .-++.+ T Consensus 131 D~~~~~~~~--a~~~~~~d~~--~~~~~~~~~~--~~~~~----~~~~~~~~---~~~----------------~~n~~g 181 (409) T protein:vir:94 131 DPITGLLTE--GYAVLERDEN--NNVVLEAHFL--PDRTD----YYYRDSRN---NIS----------------IANPTG 181 (409) T ss_pred ecCCCceee--eEEEEEecCC--CceEEEEEEe--cCcEE----EEEecCce---eEe----------------eeCCCC Confidence 332222222 2222222211 1233333332 11111 12222111 000 112334 Q ss_pred cceEEEecCCccccccCCCcCCcchhh-hHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceE Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVD-NAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVY 316 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 316 (508) .+++ +|++|+.+...|+|+|.+. .+++|+|++|++.++.....+ .+-|..++.. +..++++...|....... T Consensus 182 ~vPv----V~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~d~d~~~~~~~~~~~~~i 255 (409) T protein:vir:94 182 HPLL----VPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTG--LSDDAEPMETWKATVSSM 255 (409) T ss_pred Ccce----EEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEe--cCCCCcccchhhhhHHHh Confidence 4443 4667888888999999995 699999999999999988765 3444444411 122233333333222222 Q ss_pred eeecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 317 VGVLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVE 395 (508) Q Consensus 317 ~~~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~ 395 (508) ..+..+ .++.+++..|. .-..+.|.+.++.+++++...++++++.||.......||.++.+....+..++..+++.|. T Consensus 256 ~~~~~d-~dg~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg 334 (409) T protein:vir:94 256 LQFTKD-EDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLG 334 (409) T ss_pred hcCCCC-CCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223322 22334444332 2356899999999999999999999999998877678899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCH---HHHHHHHHHHHhCC--CCCHHHHHHhc Q lcl|Aclame:pro 396 KAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNK---DKQLEEDAKVLAIG--ALSKQTFLQRN 470 (508) Q Consensus 396 ~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~---~~e~~~~~~~~~~G--i~s~et~l~~~ 470 (508) .+|+++++.++.+..... ........+.+.|.+..+.+. .+.++.+.+++++| +++.++.+. . T Consensus 335 ~~~~~~~rla~~i~~~~~-----------~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~-~ 402 (409) T protein:vir:94 335 AGLLNVAYLAACLRDDAP-----------YLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRD-L 402 (409) T ss_pred HHHHHHHHHHHHHhCCCC-----------ccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHH-H Confidence 999999998887743211 111223468899996656664 45567789999998 555665444 5 Q ss_pred CCCCHHH Q lcl|Aclame:pro 471 YGMTDEQ 477 (508) Q Consensus 471 ~~~~dee 477 (508) .|+|+.+ T Consensus 403 lG~~~~d 409 (409) T protein:vir:94 403 TGIEGGE 409 (409) T ss_pred cCCCCCC Confidence 5887755 No 71 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=2.1e-31 Score=188.80 Aligned_cols=479 Identities=12% Similarity=0.095 Sum_probs=285.2 Q ss_pred CChHHH----HHHHHHHHHHhhhhhhhhHHhhccccc-cCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccc Q lcl|Aclame:pro 1 MGLIQR----IKDLFWKGAAATGVTGSLSKITDDPRI-SIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTIN 75 (508) Q Consensus 1 m~~~~~----ik~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n 75 (508) |+-=.+ -+++|+ ...++. + ..+..++.+|+....||.|++-.+.-- .+|. .+..++ T Consensus 1 m~~~~~q~~p~~~~fp-------------~~~a~w-V~~~D~~RlaaY~ly~d~y~n~~~el~~i-l~G~----dr~~~~ 61 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLR-------------GGDDNI-VDENDKNRVRAYDLYENIYLNSAETLKLV-LRGD----DSVPIL 61 (563) T ss_pred CCccccccCCCccccc-------------cccccc-CCHHHHHHHHHHHHHHHhhcCchhhhhhh-cCCC----ceeeec Confidence 221100 011111 111111 1 224468889999999999997654311 1222 233444 Q ss_pred --hHHHHHHHHHHhhhcCcceEeeCCcH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----- Q lcl|Aclame:pro 76 --MAKTAARRIASVVFNEKAEIHVKDNN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----- 141 (508) Q Consensus 76 --~~~~iv~~~A~ll~~e~~~i~~~~~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----- 141 (508) .++++|+..+++ |+++..++|+..+ .++++|..+++.+.+..++..+...|..+|.++|+.-||. T Consensus 62 ~ps~r~~V~~~~~~-Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g 140 (563) T protein:vir:74 62 MPSGRKIVEAVHRF-LGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAG 140 (563) T ss_pred cchHHHHHHHHHHh-cCCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccC Confidence 567999996654 5999999886533 3567888899999999999999999999999999999994 Q ss_pred CeeEEEEEcCCeEEEEEEcCCCeEEEEEEE---EEEEeecCCcEEEEEEE--EEEEeCCceEEEEEEEEecCCccccCc- Q lcl|Aclame:pro 142 NHIKIAWVRADQFYPLQSNTNDISEAAIAS---RTQRTESNQTKYYTLLE--FHQWQDNGSYQITNELYKSDSPDIVGN- 215 (508) Q Consensus 142 ~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~---~~~~~~~~~~~~yt~lE--~h~~~~~g~~~I~~~ly~~~~~~~lG~- 215 (508) +++++.-|+|.++||+ .+.+.....-.+. .|...+....+.+ ++. .++|.+.|.|+ ++.++..+. ..+|. T Consensus 141 ~R~rv~~vDP~~~fp~-~dpd~v~g~~~v~v~~~~~~pdd~~~~~~-r~~~~~~~lndeg~~~-~~~~~dae~-w~lg~w 216 (563) T protein:vir:74 141 ERISVDEVDPRQIFLI-EDGSTVVGFHMVDIVQDFRSPDDPSKKLA-RRRTFRRVRNDEGMFT-GRISSELTH-WTLGNW 216 (563) T ss_pred CCceEeecCCceeeec-cCCCCcccceeeecccCCCCCcchhccce-eeeeeeeeeCCCCCcc-ceeeeccch-hccccc Confidence 4789999999999995 4444332221111 2211222222222 222 34566666543 222222210 11110 Q ss_pred -cccccc--c-ccccCC---CcceeecCCCcceEEEecCCccccc-cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 216 -QVPLST--L-PVYKEL---APQVTISGLQRPLFAYFKTPGANNI-NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL 287 (508) Q Consensus 216 -~v~l~~--~-~~~~~l---~~~~~~~g~~~~~f~~~~~~~~n~~-~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~ 287 (508) ..++.. . ++..++ .-.....-++.| .+++|+-++||+ ..+|.+|.|+++++++++++||.+.|...+.+.- T Consensus 217 d~r~~~~~~~~~~~~~~~~~~~d~e~~~LP~p-i~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~ 295 (563) T protein:vir:74 217 DDRGAISDEQARRKEQVRSAQHDEEEEELPEP-ISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVF 295 (563) T ss_pred cccCccchhhhcccchhhhhhhhchhhhcccc-ccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHh Confidence 000000 0 000000 000011112333 334444334444 4468899999999999999999999999999988 Q ss_pred ccceeeechHHhcCCCCCCccCC----cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHH-HHHHHhCCCchh Q lcl|Aclame:pro 288 GQKHIAVQPGMLRFDDEHKPTFD----TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIK-EFEVQIGLSTGT 362 (508) Q Consensus 288 ~~~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~-~i~~~~g~s~~~ 362 (508) +..-|+|.++....++..+..-+ +..-.. + .++.....+..++.--.+.....+++.+.. -|...++++..+ T Consensus 296 tG~pi~vl~~~~p~d~~~g~~~~w~vgpG~i~E--l-~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA 372 (563) T protein:vir:74 296 QGLGMYVTNASAPVDPNTGELTDWNIGPMQIVE--I-AGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVA 372 (563) T ss_pred cCCCeEEeccccccccccccccccccCCceeEe--c-cCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCccee Confidence 88778886654444443332211 111111 1 122222346666554455666677777765 567778999999 Q ss_pred cc--ccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHhhhccccccccccccccccCcceEEEE Q lcl|Aclame:pro 363 FS--YSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDE----LCQSIFELANAGALFDDGKPLFTLDSASQPLDIECH 436 (508) Q Consensus 363 ~~--~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~----li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~ 436 (508) || +.+. ..|+.++..+-+.+.+++..++..+...+++ +++..+....-..+.-.+...+.+........|+|. T Consensus 373 ~G~vD~~~-~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~iv 451 (563) T protein:vir:74 373 IGRVDVTS-AESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCI 451 (563) T ss_pred eccccccc-ccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEE Confidence 99 5444 5677778888888888888888766666665 665555444333334344444444444444457899 Q ss_pred eCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHh--------ccCCCCCCcccccCCCCC Q lcl|Aclame:pro 437 FDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAEELAKIQSE--------APTDTFEGGRSAILNGGD 506 (508) Q Consensus 437 f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea~~e~~ri~~E--------~~~~~~~~~~~~~~~~~~ 506 (508) |.+.+|+|.++.+++...++.+|++|.+|++..+ -||...+|+.+.++|+.+ ++.++...+...+.+++- T Consensus 452 f~p~~P~d~~~vv~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~ 531 (563) T protein:vir:74 452 FADPMPVNKTQVTQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGA 531 (563) T ss_pred eCCCCCccHHHHHHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCC Confidence 9999999999999999999999999999996543 255555566666554433 444555555555555544 Q ss_pred CC Q lcl|Aclame:pro 507 GE 508 (508) Q Consensus 507 g~ 508 (508) || T Consensus 532 ~~ 533 (563) T protein:vir:74 532 GE 533 (563) T ss_pred Cc Confidence 44 No 72 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=1.1e-31 Score=190.37 Aligned_cols=467 Identities=11% Similarity=0.104 Sum_probs=277.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhh---cc-ccc--cCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKIT---DD-PRI--SIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~---~~-~~i--~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~ 74 (508) |+- .-.+...-+.+- ++ ++. ..+..++.+|+....||.|++..+.--...+...-.+.+.+ T Consensus 1 ~~~-------------~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~~~ 67 (527) T protein:vir:10 1 MGQ-------------DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) T ss_pred CCc-------------cccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccccceeee Confidence 221 101111112221 11 111 22446888999999999999876542211121111223333 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC--------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD--------NNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~--------~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----- 141 (508) +- +.++++.+-.|++.+ ++..+..|..+++.+.+..++.+.-..|..+|.++|+.-||. T Consensus 68 ps--------~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~ 139 (527) T protein:vir:10 68 PN--------GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEG 139 (527) T ss_pred hh--------hHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcC Confidence 33 356666666666543 335677888889999999999999999999999999999995 Q ss_pred CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEEEEEEeecCCcEEE-EEEEE--EEEeCCc----eEEEEEEEEecCCccc Q lcl|Aclame:pro 142 NHIKIAWVRADQFYPLQSNT--NDISEAAIASRTQRTESNQTKYY-TLLEF--HQWQDNG----SYQITNELYKSDSPDI 212 (508) Q Consensus 142 ~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~~~~~~~~~~~~~y-t~lE~--h~~~~~g----~~~I~~~ly~~~~~~~ 212 (508) +++++..++|.++||++... +.+..+.++..|.-.+..+..++ .++.+ ++..+.| .|+|.+... ... T Consensus 140 ~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~----~w~ 215 (527) T protein:vir:10 140 SRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE----LYE 215 (527) T ss_pred CCceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeec----eee Confidence 36899999999999985543 34666666655543333332222 22221 1223333 244443211 111 Q ss_pred cCccccccccccc----cCCCcceeecCCCcceEEEecC-CccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 213 VGNQVPLSTLPVY----KELAPQVTISGLQRPLFAYFKT-PGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL 287 (508) Q Consensus 213 lG~~v~l~~~~~~----~~l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~ 287 (508) +|.=-...+.|.. +-....++.+.++.|+ .++|+ +++|-....+.+|.|+++++++++++||.+.|+..+.++. T Consensus 216 lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi-~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~ 294 (527) T protein:vir:10 216 PGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQI-TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) T ss_pred ccccccccccccchhhhhhhcCceeeecccCCC-CccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHH Confidence 1111111112211 1111122333444442 33332 3445555668899999999999999999999999999986 Q ss_pred ccceeeechHHhcCCCCCCccCCcccceE--eeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccc Q lcl|Aclame:pro 288 GQKHIAVQPGMLRFDDEHKPTFDTEQNVY--VGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSY 365 (508) Q Consensus 288 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 365 (508) +..-|++...+-..+..|... + ..+- ..+..++ ++.+..++---.++.+..+++.+.+.|...++++..+||. T Consensus 295 sG~Pi~~~tg~~~vd~~G~~~-~--~~VgPG~iweL~e--~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~ 369 (527) T protein:vir:10 295 GGLGFYATDSAPPRDSRGNMV-P--WTISPLGMVEHGQ--NNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGV 369 (527) T ss_pred hCCceeeecccccccccCCcC-c--cccCCceeEecCC--CcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeecc Confidence 655555533332222222210 0 0000 0011222 2233333332356789999999999999999999999993 Q ss_pred -cccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHhhhccccccccccccccccCcceEEEEeCCCcc Q lcl|Aclame:pro 366 -SNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSI--FELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVF 442 (508) Q Consensus 366 -~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i--~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~ 442 (508) +.++..|+.++..+.+.++++..+++..|+...+++.+.. .|+. .|.. +++........+.|.|.+.+| T Consensus 370 vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~-aye~-------v~~~d~~~~~~v~ivf~p~lP 441 (527) T protein:vir:10 370 VDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP-AYEG-------VGIDDADKKLTVTITFRDPKP 441 (527) T ss_pred ccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-Hhhh-------cccCCCccccceEEEecccCC Confidence 3456778999999999999999999888888777765422 2322 2221 122222234568999999999 Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHhc-------cCCCCCCccc-ccCCCCCCC Q lcl|Aclame:pro 443 VNKDKQLEEDAKVLAIGALSKQTFLQRN---YGMTDEQAAEELAKIQSEA-------PTDTFEGGRS-AILNGGDGE 508 (508) Q Consensus 443 ~d~~~e~~~~~~~~~~Gi~s~et~l~~~---~~~~deea~~e~~ri~~E~-------~~~~~~~~~~-~~~~~~~g~ 508 (508) +|.++.+++..+++++|++|.+|++.++ .|..+ +++|++||.++. +++..+.++. +.++|.+.+ T Consensus 442 ~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD--~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~ 516 (527) T protein:vir:10 442 VNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFEL--TEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDE 516 (527) T ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCC Confidence 9999999999999999999999997654 55433 666777776654 2233333333 333332222 No 73 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=1.3e-31 Score=189.96 Aligned_cols=467 Identities=11% Similarity=0.105 Sum_probs=277.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhh---cc-ccc--cCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKIT---DD-PRI--SIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~---~~-~~i--~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~ 74 (508) |+- .-.+...-+.+- ++ ++. ..+..++.+|+....||.|++..+.--...+...-.+.+.+ T Consensus 1 ~~~-------------~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~~~ 67 (527) T protein:vir:10 1 MGQ-------------DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) T ss_pred CCc-------------cccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccccceeee Confidence 221 101111112221 11 111 22446888999999999999876542211121111223333 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC--------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD--------NNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~--------~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----- 141 (508) +- +.++++.+-.|++.+ ++..+..|..+++.+.+..++.+.-..|..+|.++|+.-||. T Consensus 68 ps--------~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~ 139 (527) T protein:vir:10 68 PN--------GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEG 139 (527) T ss_pred hh--------hHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcC Confidence 33 356666666666543 335577788889999999999999999999999999999995 Q ss_pred CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEEEEEEeecCCcEEE-EEEEE--EEEeCCc----eEEEEEEEEecCCccc Q lcl|Aclame:pro 142 NHIKIAWVRADQFYPLQSNT--NDISEAAIASRTQRTESNQTKYY-TLLEF--HQWQDNG----SYQITNELYKSDSPDI 212 (508) Q Consensus 142 ~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~~~~~~~~~~~~~y-t~lE~--h~~~~~g----~~~I~~~ly~~~~~~~ 212 (508) +++++..++|.++||++... +.+..+.++..|.-.+..+..++ .++.+ ++..+.| .|+|.+... ... T Consensus 140 ~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~----~w~ 215 (527) T protein:vir:10 140 SRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE----LYE 215 (527) T ss_pred CCceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeec----eee Confidence 36899999999999985543 34666666655543333332222 22221 1223333 244443211 111 Q ss_pred cCccccccccccc----cCCCcceeecCCCcceEEEecC-CccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 213 VGNQVPLSTLPVY----KELAPQVTISGLQRPLFAYFKT-PGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL 287 (508) Q Consensus 213 lG~~v~l~~~~~~----~~l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~ 287 (508) +|.=-...+.|.. +-....++.+.++.|+ .++|+ +++|-....+.+|.|+++++++++++||.+.|+..+.++. T Consensus 216 lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi-~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~ 294 (527) T protein:vir:10 216 PGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQI-TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) T ss_pred ccccccccccccchhhhhhhcCceeeecccCCC-CccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHH Confidence 1111111112211 1111122333444442 33332 3445555668899999999999999999999999999986 Q ss_pred ccceeeechHHhcCCCCCCccCCcccceE--eeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccc Q lcl|Aclame:pro 288 GQKHIAVQPGMLRFDDEHKPTFDTEQNVY--VGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSY 365 (508) Q Consensus 288 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 365 (508) +..-|++...+-..+..|... + ..+- ..+..++ ++.+..++---.++.+..+++.+.+.|...++++..+||. T Consensus 295 sG~Pi~~~tg~~~vd~~G~~~-~--~~VgPG~iweL~e--~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~ 369 (527) T protein:vir:10 295 GGLGFYATDSAPPRDSRGNMV-P--WTISPLGMVEHGQ--NNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) T ss_pred hCCceeeecccccccccCCcC-c--cccCCceeEecCC--CcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeecc Confidence 655555533332222222210 0 0000 0011222 2233333332356789999999999999999999999993 Q ss_pred -cccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHhhhccccccccccccccccCcceEEEEeCCCcc Q lcl|Aclame:pro 366 -SNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSI--FELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVF 442 (508) Q Consensus 366 -~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i--~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~ 442 (508) +.++..|+.++..+.+.++++..+++..|+...+++.+.. .|+. .|.. +++........+.|.|.+.+| T Consensus 370 vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~-aye~-------v~~~d~~~~~~v~ivf~p~lP 441 (527) T protein:vir:10 370 VDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP-AYEG-------VGIDDADKKLTVTITFRDPKP 441 (527) T ss_pred ccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-Hhhh-------cccCCCccccceEEEecccCC Confidence 3456778999999999999999999888888777765422 2322 2221 122222234568999999999 Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHhc-------cCCCCCCccc-ccCCCCCCC Q lcl|Aclame:pro 443 VNKDKQLEEDAKVLAIGALSKQTFLQRN---YGMTDEQAAEELAKIQSEA-------PTDTFEGGRS-AILNGGDGE 508 (508) Q Consensus 443 ~d~~~e~~~~~~~~~~Gi~s~et~l~~~---~~~~deea~~e~~ri~~E~-------~~~~~~~~~~-~~~~~~~g~ 508 (508) +|.++.+++..+++++|++|.+|++.++ .|..+ +++|++||.++. +++..+.++. +.++|.+.+ T Consensus 442 ~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD--~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~ 516 (527) T protein:vir:10 442 VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFEL--TEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDE 516 (527) T ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCC Confidence 9999999999999999999999997654 55433 666677776664 2233333333 333332222 No 74 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=99.75 E-value=4.6e-16 Score=104.68 Aligned_cols=425 Identities=10% Similarity=0.060 Sum_probs=213.7 Q ss_pred hhhHHhhccccccCCHHHHHHHHHHHH---HhcCCCcc-------ccCccCCCccccccccc----cchHHHHHHHHHHh Q lcl|Aclame:pro 22 GSLSKITDDPRISIDPDEYVRIQTDLD---YYSDKLQY-------IHYQASDGIKKKRLKNT----INMAKTAARRIASV 87 (508) Q Consensus 22 ~~~~~~~~~~~i~~~~~~~~~i~~~~~---~Y~g~~~~-------~~~~~~~~~~~~~~~~~----~n~~~~iv~~~A~l 87 (508) |++. ...+++......|+. .|.|.... +..........-..|.. .|+++.+++.++++ T Consensus 1 m~V~--------~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~ 72 (452) T protein:vir:94 1 MPIE--------TKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGM 72 (452) T ss_pred CCCC--------CcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhch Confidence 1111 224555555555543 44444321 11111111111011122 59999999999999 Q ss_pred hhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CCeeEEEEEcCCeEEEEEEc-CCCe Q lcl|Aclame:pro 88 VFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID--GNHIKIAWVRADQFYPLQSN-TNDI 164 (508) Q Consensus 88 l~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~~~~i~~v~a~~~~Pi~~d-~~~~ 164 (508) +|.++|++++. +.+. .+..=..-++++..++.++..++.+|.+++.+=+. ++++-+..++|.+++=-..+ .|++ T Consensus 73 vf~k~p~~~~p--~~l~-~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~~~~g~l 149 (452) T protein:vir:94 73 VLDQPPVITHP--DAMS-KYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEEDEDGRL 149 (452) T ss_pred hhcCCceeccc--HHHH-HHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCccccccCCe Confidence 99999999864 3332 23322445689999999999999999999877665 46799999999998842222 3556 Q ss_pred EEEEEEEEEEEeecCC------cEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 165 SEAAIASRTQRTESNQ------TKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 165 ~~~~f~~~~~~~~~~~------~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) +.++|.+.....+..+ ...|+.|+ .+ .|.|.+ ++|+..+... ..+.+ +. .+...-+.++ T Consensus 150 ~~v~lre~~~~~d~~d~f~~~~~~~yRvL~---l~-~g~~~v--~~~~~~~~~~----~~~~~--~~---~~~~~~~~l~ 214 (452) T protein:vir:94 150 LMVVLREFYTVRDTADRYVQNIRVRYRCLE---LV-DGLLQI--TVHETQDGKV----WELAK--TS---TIQNVGVTMD 214 (452) T ss_pred eEEEEEEEEEEecCCCcccceeEEEEEEEE---Ee-CCeEEE--EEEEccCCce----eeecc--ce---eecCCCcccc Confidence 6555554433333221 12233332 22 245554 5565332211 00000 00 0000113355 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEe Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYV 317 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 317 (508) ..||+++... .| +-..|.|-+.++..+--+.-..-|.+.+.+. .+.|..++.. .+....-.+-.+ . T Consensus 215 ~IP~v~~~~~-~~----~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g----~~~~~~i~iG~~--~-- 281 (452) T protein:vir:94 215 YIPFFCITPS-GL----SMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITG----AESQSTMHIGST--K-- 281 (452) T ss_pred eeEEEEEcCC-CC----CCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeec----CcCCCceEeccc--c-- Confidence 5666655211 11 1123666666766666666666666777765 4566555532 111111111110 0 Q ss_pred eecCCCCCCCcceEeeccCC-HHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 318 GVLSDDNNGLGVKDMTTPIR-TVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 318 ~~~~~~~~~~~i~~~~~dir-~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) ++...+. +..+..++++-. .+++++.|+.+-+++.. . +...+.....+..|+++.....+...+....+...++. T Consensus 282 ~~~lpe~-~~~~~yie~~g~~i~~~~~~l~~le~~m~~-~--Ga~ll~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~ 357 (452) T protein:vir:94 282 AWVIPEV-AAKVGFLEFTGQGLQSLEKALSEKQAQLAS-L--SARLIDNSTRGSEATETVKLRYMSETASLKSVTRAVEA 357 (452) T ss_pred cccCCCC-CCcceEEccCchhHHHHHHHHHHHHHHHHH-H--HHHhhccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHH Confidence 1122221 223556666543 35667777777666533 2 22333333334445555555555555677778888888 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCC Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMT 474 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~ 474 (508) ++.++++.++.+... ......+++-+|.+ .....+.++.+.++..+|.+|.+|++..+ -|+- T Consensus 358 al~~~l~~~a~w~g~--------------~~~~~v~~n~dF~~--~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl 421 (452) T protein:vir:94 358 LLNKAYSCIMDMESM--------------GGTLNIKLNSAFLD--SKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVL 421 (452) T ss_pred HHHHHHHHHHHHcCC--------------CCceEEEecccccc--ccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCC Confidence 888888877665321 00112233344433 22234678888899999999999986542 3333 Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 475 DEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 475 deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +-+ +|.+++..|.+...+-... ++..+++.- T Consensus 422 ~~~--~e~~~i~~E~~~~~~~~~~-~~~~~~~~~ 452 (452) T protein:vir:94 422 PPP--GESMGVIPDPPAPEPSPSN-TPPNPSSKA 452 (452) T ss_pred CCc--cCHHHHHHHhhccCcccCC-CCCCCccCC Confidence 211 2223444443221111111 111111111 No 75 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.68 E-value=4e-14 Score=94.05 Aligned_cols=438 Identities=14% Similarity=0.119 Sum_probs=205.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) +..|+.|+..+. |...|.... +..+ ++... +.+. .+.+.-|+ .+..+- .-.|+++.+ T Consensus 46 ~~~W~~ird~~~-G~~~~r~~g--~~YL--P~~~~--~~~~--~E~~~~Y~-------------~rl~rA-~~~n~~~~t 102 (535) T protein:vir:80 46 LPKWRKIMDCLS-GQEAIKAKR--EEYL--PMPSV--DSRD--EEQRRRYE-------------TYLQRA-IFYNVTART 102 (535) T ss_pred HHHHHHHHHHhc-ChHHHHhcc--cccC--CCCCc--ccCC--cCCHHHHH-------------HHHhhc-cCCChhHHH Confidence 444555555441 111111000 0000 00000 0000 00000000 000111 124899999 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--------------CeeE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG--------------NHIK 145 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--------------~~~~ 145 (508) ++.++.++|.++|++++. +.+..++..+ ..-+++...++.++..++.+|.+++.+=+.. -++- T Consensus 103 l~~l~G~vfrk~p~~~~p--~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rPy 180 (535) T protein:vir:80 103 LDGMMGQVFSRDPIRQLP--PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPT 180 (535) T ss_pred HHHHhchhhcCCcceecc--HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCcE Confidence 999999999999988763 3333333222 1124788999999999999999988765421 1367 Q ss_pred EEEEcCCeEEEEEEcC----C--CeEEEEEEEEEEEeecC----CcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNT----N--DISEAAIASRTQRTESN----QTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~----~--~~~~~~f~~~~~~~~~~----~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) +..++|++++= |+. | .++.+++.+.+...+.. ....|+.|+. ...|.|++ ++|+.+..... T Consensus 181 ~~~y~ae~Iin--W~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~---~~~G~y~v--~~~~~~~~~~~-- 251 (535) T protein:vir:80 181 ITLVHPTSIIN--WRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQL---NAEGNYQV--ERWRRETQEEM-- 251 (535) T ss_pred EEEechhhccC--ccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEe---cCCceEEE--EEEEeecCCcc-- Confidence 89999999874 442 2 35555665554433211 1223444443 33466776 45543322110 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeee Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAV 294 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v 294 (508) .....++ ..+....+.++..||+++... .|. ...|.+-|-++..+--+.=..-|.+.+.+. .+.|..++ T Consensus 252 ~~~~~~~-----~~~~~g~~~l~~IPfv~~~~~-~~~----~~~~~pPLl~LA~lni~Hy~~ssd~~~il~~~~~P~l~i 321 (535) T protein:vir:80 252 YYSYSKH-----VPTDGNGNPFKEIPFQFIGPL-DNN----ADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFF 321 (535) T ss_pred cccccee-----ecccCCCcccCeeEEEEeecC-CCC----CCCCccchHHHHHHHHHHhhchhHHHHHHHHhcCceeee Confidence 0101110 001111244666677766311 111 112334333333332221112233444443 45666665 Q ss_pred ch--HHhcCCC-CCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccc Q lcl|Aclame:pro 295 QP--GMLRFDD-EHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVK 371 (508) Q Consensus 295 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~ 371 (508) .. .....+. .+.+.--... .++....+...++-.+++.--. .+.++.+-.++.. ++...+ ....+.. T Consensus 322 ~G~~~~~~~~~~~~~~i~iG~~---~~~~lP~~~~~~~~e~~~~~~a---~~~l~~~e~qM~~---lGa~ll-~~~~~~~ 391 (535) T protein:vir:80 322 TGLTKDWVEDVFKDFKVHLGSR---AIIPLPQGATAGILQITPNSVP---FEAMTHKESQMIA---MGANLL-VKSGGNR 391 (535) T ss_pred ecCchhhhhcCCCCcceEecCc---ccccCCCCCCcceeeeccchhH---HHHHHHHHHHHHH---HHHHhh-ccCcccc Confidence 32 1110110 1111100001 1122233333445555554211 2334444433322 223333 2345678 Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcce--EEEEeCCCccCCHHHHH Q lcl|Aclame:pro 372 TATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLD--IECHFDDGVFVNKDKQL 449 (508) Q Consensus 372 TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~e--i~i~f~d~i~~d~~~e~ 449 (508) ||++.+...+...+....+...++.++.++++.|..+... . .....++ +.-+|.+ ...+ .+++ T Consensus 392 Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~w~G~---~----------~~~~~~~i~~n~dF~~-~~ld-~~~~ 456 (535) T protein:vir:80 392 TFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTG---I----------VNDETVEYNLNTDFPA-ARLT-PNER 456 (535) T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCC---c----------cCCCceEEEecccccc-ccCC-HHHH Confidence 8988888887778888889999999999998876654211 0 0111222 3344443 2223 4477 Q ss_pred HHHHHHHhCCCCCHHHHHHhc--CCCCHH--HHHHHHHHHHHhccCCCCCCcccccCCCCC---------CC Q lcl|Aclame:pro 450 EEDAKVLAIGALSKQTFLQRN--YGMTDE--QAAEELAKIQSEAPTDTFEGGRSAILNGGD---------GE 508 (508) Q Consensus 450 ~~~~~~~~~Gi~s~et~l~~~--~~~~de--ea~~e~~ri~~E~~~~~~~~~~~~~~~~~~---------g~ 508 (508) +.+.+++.+|.||.+|++..+ -++-+. +-++|..||+.|........+... ..+.+ |+ T Consensus 457 ~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~-d~~~~g~~~~~~~~~~ 527 (535) T protein:vir:80 457 AELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVG-DAASGGTNKAKLNNGN 527 (535) T ss_pred HHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccccCCCCC-CCCCCCCCcCcccCCc Confidence 788899999999999987542 233211 124566777777432222211111 11122 22 No 76 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.68 E-value=1.9e-14 Score=95.84 Aligned_cols=436 Identities=10% Similarity=0.064 Sum_probs=214.9 Q ss_pred hhhHHhhccccccCCHHHHHHHHHHH---HHhcCCCc-------cccCccCCCc--ccccc--ccccchHHHHHHHHHHh Q lcl|Aclame:pro 22 GSLSKITDDPRISIDPDEYVRIQTDL---DYYSDKLQ-------YIHYQASDGI--KKKRL--KNTINMAKTAARRIASV 87 (508) Q Consensus 22 ~~~~~~~~~~~i~~~~~~~~~i~~~~---~~Y~g~~~-------~~~~~~~~~~--~~~~~--~~~~n~~~~iv~~~A~l 87 (508) ++=.++.+ .. ...+++......|+ ..|.|... .+........ .+.+. =.-.|+++.+++.++.+ T Consensus 1 m~~~~~~~-v~-~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~ 78 (513) T protein:vir:97 1 MADKDPKS-PA-TTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLSGK 78 (513) T ss_pred CCCCCCCC-CC-cCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhhh Confidence 11112221 11 22445544445553 44555421 1111111100 01111 11249999999999999 Q ss_pred hhcCcceEeeCCcHHHHHHH-HHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--C-----------------eeEE Q lcl|Aclame:pro 88 VFNEKAEIHVKDNNEADKFL-NDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG--N-----------------HIKI 146 (508) Q Consensus 88 l~~e~~~i~~~~~~~~~~~l-~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--~-----------------~~~i 146 (508) +|.++|+++....+...+.| ..+ ..-+++...++.++..++.+|.+++.+=+.. + ++-+ T Consensus 79 vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~~rPy~ 158 (513) T protein:vir:97 79 PFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREGLRPYW 158 (513) T ss_pred hhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhccCceE Confidence 99999988743333322212 111 1225788999999999999998887654321 1 3668 Q ss_pred EEEcCCeEEEEEEc----CC--CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSN----TN--DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLS 220 (508) Q Consensus 147 ~~v~a~~~~Pi~~d----~~--~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~ 220 (508) ..+.|++++= |+ +| .++.+++.+.+...++-..+.++ .+..|+. |.+. +|+-......+ T Consensus 159 ~~~~~e~Iin--W~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~--q~rvL~~-g~~~----v~r~~~~~~~~------ 223 (513) T protein:vir:97 159 VMIKPECLLF--ARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKR--RIRVLEP-GLVQ----LWEPVKKSNAQ------ 223 (513) T ss_pred EEecHhhhcC--cceeccCcceeeeeEEEEEEEeecCCCcceEEE--EEEEEeC-ceEE----EEEeecCCCcc------ Confidence 8899999874 43 33 24555554444433322223332 2223443 3443 44322111100 Q ss_pred ccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHh Q lcl|Aclame:pro 221 TLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGML 299 (508) Q Consensus 221 ~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~ 299 (508) ..+|.-. .. .-+.++..||+++-.. .|. ...|.|-+-++..+=.+.=...|.+-..+. .+.|..++.. + T Consensus 224 -~~e~~~~-~~-g~~~l~~IP~v~~~~~-~~~----~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G-~- 293 (513) T protein:vir:97 224 -KEEWALA-DE-WATGLNYVPLVTFYAD-RQG----FMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSG-A- 293 (513) T ss_pred -ccceEEe-cC-CCCcCCceeEEEEecC-CCC----CCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeec-C- Confidence 0111100 00 1134666777766322 111 112445555554444444444555555554 4566666631 1 Q ss_pred cCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCC-HHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIR-TVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVS 378 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir-~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~ 378 (508) +..........-+. .+... ..+..+.+++++-. .++..+.|+.+-+++ ...| ...+ ...++.+|||+... T Consensus 294 --~~~~~~~i~iG~~~--~~~lp-e~~~~~~yie~~g~~i~~~~~~l~~le~qm-~~~G--a~ll-~~~~~~~Ta~a~~~ 364 (513) T protein:vir:97 294 --SGEDSDPVVVGPNK--VLYNP-DPAGRFYYVEHTGQAIAAGRTDLKDLEEQM-AGYG--AEFL-KRKTGGQTATARAL 364 (513) T ss_pred --CcCCCCceEeeccc--cccCC-CCCCcceeeccCchhHHHHHHHHHHHHHHH-HHHH--HHhh-ccCCccccHHHHHH Confidence 11110000000000 01111 11233666666643 355667777776666 3333 2222 34556799999999 Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 379 NNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAI 458 (508) Q Consensus 379 ~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~ 458 (508) ..+...+....+...++.+|.++++.+..+.... .....++++=+|..... ..+.++.++++..+ T Consensus 365 ~~~~~~S~L~~~a~~le~al~~~l~~~a~wlg~~-------------~~~~~v~in~dF~~~~~--~~~~~~al~~a~~~ 429 (513) T protein:vir:97 365 DSAEATSDLSAMTGLFEDALAQALDITADWLRLG-------------PNGGTVELVKDYDLEEM--DAPGLQALQVAREK 429 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCccEEEeccccCcccC--CHHHHHHHHHHHhC Confidence 9999999999999999999999998877663210 00012334444554322 34577888999999 Q ss_pred CCCCHHHHHHhc-------CCCCHHH-HHHHHHHHHHhccCC----CCCCc--ccccC--------CCCCCC Q lcl|Aclame:pro 459 GALSKQTFLQRN-------YGMTDEQ-AAEELAKIQSEAPTD----TFEGG--RSAIL--------NGGDGE 508 (508) Q Consensus 459 Gi~s~et~l~~~-------~~~~dee-a~~e~~ri~~E~~~~----~~~~~--~~~~~--------~~~~g~ 508 (508) |.||.+|++..+ |..++++ -+++.+||.+..... ++... ..+.. ++.+|+ T Consensus 430 G~is~~t~~~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (513) T protein:vir:97 430 RDISRKTYLNGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGE 501 (513) T ss_pred CCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC Confidence 999999986542 2334333 344555554442211 00000 00001 001111 No 77 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.66 E-value=7.5e-14 Score=92.53 Aligned_cols=429 Identities=14% Similarity=0.143 Sum_probs=213.0 Q ss_pred cccc-cCCHHHHHHHHHHH---HHhcCCCc-------cccCc-----cCCCc--ccccc-c-cccchHHHHHHHHHHhhh Q lcl|Aclame:pro 30 DPRI-SIDPDEYVRIQTDL---DYYSDKLQ-------YIHYQ-----ASDGI--KKKRL-K-NTINMAKTAARRIASVVF 89 (508) Q Consensus 30 ~~~i-~~~~~~~~~i~~~~---~~Y~g~~~-------~~~~~-----~~~~~--~~~~~-~-~~~n~~~~iv~~~A~ll~ 89 (508) .++| ...+++......|. ..|.|... .++.. ...+. .+.+. + .-.|+++.+++.+++++| T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l~G~vf 80 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGLVGQVF 80 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHHhhhhh Confidence 3444 33566666666664 34555532 11110 00000 11111 1 124999999999999999 Q ss_pred cCcceEeeCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CC--------------eeEEEEEcCC Q lcl|Aclame:pro 90 NEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYID--GN--------------HIKIAWVRAD 152 (508) Q Consensus 90 ~e~~~i~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~--------------~~~i~~v~a~ 152 (508) .++|++++. +.+..++..+ ..-+++...++.++..++.+|.+++.+=+. ++ ++-+..++|. T Consensus 81 ~k~p~~~~p--~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rPy~~~~~~~ 158 (501) T protein:vir:95 81 MRDPVVKVP--ALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRPTLYVYSPT 158 (501) T ss_pred cCCcceeCc--HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCcEEEEecHh Confidence 999999753 3333333322 112478899999999999999998766442 11 3668899999 Q ss_pred eEEEEEEcC----C--CeEEEEEEEEEEEeec----CCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-ccCccccccc Q lcl|Aclame:pro 153 QFYPLQSNT----N--DISEAAIASRTQRTES----NQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-IVGNQVPLST 221 (508) Q Consensus 153 ~~~Pi~~d~----~--~~~~~~f~~~~~~~~~----~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-~lG~~v~l~~ 221 (508) +++= |+. | .++.+++.+.+...++ .....|+.|+. ..+|.| .+++|+..... .-|..++... T Consensus 159 ~Iin--W~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~---~~~g~~--~~~v~r~~~~~~~~~~~~~~~~ 231 (501) T protein:vir:95 159 EIIN--WRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRL---DEEGYY--VHEIWREPQPTKADGSKIPKGN 231 (501) T ss_pred hhcC--cceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEee---CCCceE--EEEEEEecCCcccCcceecCCc Confidence 9874 332 2 2555555544433222 11233444432 223443 44566543221 1122222111 Q ss_pred cccccCCCcce----eecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHH------HHHHHHH-hccc Q lcl|Aclame:pro 222 LPVYKELAPQV----TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHD------QFIWEIR-LGQK 290 (508) Q Consensus 222 ~~~~~~l~~~~----~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s------~~~~e~~-~~~~ 290 (508) . ....+.+ ..+.++..||+++-. ..|... .|.+ +|++-.+..+. .+-+.+. .+.| T Consensus 232 ~---~~~~~~~~~~~g~~~l~~IPfv~~~~-~~~~~~----~~~p------PLl~lA~lni~hy~~ssd~~~~l~~~~~P 297 (501) T protein:vir:95 232 Y---QQYVVYKPTDAQGKRLTEIPFMFIGS-ENNDSN----PDNP------NFYDLASLNMAHYRNSADYEESCYIVGQP 297 (501) T ss_pred c---cccceeeeeccCCCcCCeeeEEEEec-CCCCCC----CCcc------chHHHHHHHHHHHhhhhHHHHHHHHcccc Confidence 1 1111111 113456666766521 111111 1223 23333333332 2333343 4555 Q ss_pred eeeechHHhc---CCCCCCc-cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccc Q lcl|Aclame:pro 291 HIAVQPGMLR---FDDEHKP-TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYS 366 (508) Q Consensus 291 ~i~v~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~ 366 (508) ..++.. +-. .+..... .+..+ .++.... +..+..++++-..-+ .+.|+.+.+++.. .| ...+ .. T Consensus 298 ~l~i~G-~~~~~~~~~~~~~i~~G~~----~~~~lP~--~~~~~~ie~~~~~i~-~~~l~~l~~~m~~-~G--a~ll-~~ 365 (501) T protein:vir:95 298 TPVLIG-LTEEWVTNVLKGSVNFGSR----GGIPLPV--GADAKLLQASENTML-KEAMDTKERQMVA-LG--AKLV-EQ 365 (501) T ss_pred eeeeeC-CcccccccCCCCceeeccc----ccccCCC--CCceeEEecChhhHH-HHHHHHHHHHHHH-HH--Hhhc-cC Confidence 555521 100 0000000 11111 0111122 223455555432222 4556655555532 22 2222 23 Q ss_pred ccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHH Q lcl|Aclame:pro 367 NDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKD 446 (508) Q Consensus 367 ~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~ 446 (508) .++.+|||+.....+...+....+...++.++.++++.++.+... . .. ...++++=+|.. ..... T Consensus 366 ~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~---~-~~---------~~~v~i~~df~~--~~~~~ 430 (501) T protein:vir:95 366 KEVQRTATEAELEAASEGSTLSSATKNVSAAFEWALKWAARWVGQ---A-DS---------GVKFELNTDFDI--ARMTP 430 (501) T ss_pred CccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCC---C-CC---------ceEEEEeccccc--ccCCH Confidence 456789999999988888889999999999999999887766321 0 00 001223333332 22235 Q ss_pred HHHHHHHHHHhCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHhccCC-------CCCCcccccCCCCCCC Q lcl|Aclame:pro 447 KQLEEDAKVLAIGALSKQTFLQR--NYGMTDEQAAEELAKIQSEAPTD-------TFEGGRSAILNGGDGE 508 (508) Q Consensus 447 ~e~~~~~~~~~~Gi~s~et~l~~--~~~~~deea~~e~~ri~~E~~~~-------~~~~~~~~~~~~~~g~ 508 (508) +.++.+.+++.+|.||.+|++.. .-++.+.+.+++.++|..|..+. +.+...+|+.+-+++| T Consensus 431 ~~~~al~~~~~~G~is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 431 DERRSLVEEWQKGAITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCCCCCCcccccccCCC Confidence 56778889999999999998643 24565555556666665544321 2222222333323444 No 78 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.65 E-value=2.9e-15 Score=100.32 Aligned_cols=468 Identities=10% Similarity=0.080 Sum_probs=227.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) -.++++++.+|++... ...+-+....+..+||.|+. |-......-....+..++.|.-+-+ T Consensus 44 ~~~~~~l~~~~~~~~~------------------~~~~~r~~a~~d~~fy~G~Q-w~~~~~~~l~~~g~p~~~~N~i~~~ 104 (776) T protein:vir:93 44 VELHSRLLSYYRQELS------------------RQQDNRAEMAVDEDYYDNIQ-WSQDEIDELKERGQAPTVYNVISQS 104 (776) T ss_pred HHHHHHHHHHHHHHHh------------------hchHHHHHHHHHHHHhCCCC-CCHHHHHHHHhcCCceEEecchHHH Confidence 2245555555543221 13344556678889999882 2111000001123445778999999 Q ss_pred HHHHHHhhhcCcceEeeCCcH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----CeeEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN--------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----NHIKIAW 148 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~--------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----~~~~i~~ 148 (508) ++...++.....+.+.+...+ .++..++.+.+.|++......+...++.+|.+|++++||. +.++..+ T Consensus 105 i~~v~g~~~~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~d~~~~G~G~~~v~~d~~~~~~~~~~~~ 184 (776) T protein:vir:93 105 VNWIIGSEKRGRSDFKVLPRRKDGGKAAERKTALLKYLSDVNHTPFERSMAFEETTKAGIGWLESQVQDENDGEPIYAGA 184 (776) T ss_pred HHHHHHHHHhCCcceEEecCChhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhcCcceEEEEeeccCCCCceEeec Confidence 999999888877777663311 2345666677788999999999999999999999999974 4566778 Q ss_pred EcCCeEEEEEEcCC--CeEEEEEEEEE--EE----------------------------e-------------------- Q lcl|Aclame:pro 149 VRADQFYPLQSNTN--DISEAAIASRT--QR----------------------------T-------------------- 176 (508) Q Consensus 149 v~a~~~~Pi~~d~~--~~~~~~f~~~~--~~----------------------------~-------------------- 176 (508) +++..||+ ..+.. .+..|-|+.+. .. . T Consensus 185 ~~p~~i~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (776) T protein:vir:93 185 ESWRNILW-DSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGDDAMDSPEYERSMNSV 263 (776) T ss_pred cChhheee-ccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHHhhhhcccccchhcccccccccccccccccccc Confidence 89988874 11111 22233222110 00 0 Q ss_pred ----ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccc---------cCccccccccc-c-c-cCCC--cceeecC-- Q lcl|Aclame:pro 177 ----ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDI---------VGNQVPLSTLP-V-Y-KELA--PQVTISG-- 236 (508) Q Consensus 177 ----~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~---------lG~~v~l~~~~-~-~-~~l~--~~~~~~g-- 236 (508) .+...+..+..|+|.-.. +...++.+...+. ..+.+.+.... + . .... -.+.+.| T Consensus 264 ~~~~~~~~~~~v~v~E~~~r~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~g~~ 338 (776) T protein:vir:93 264 TAGAVAYARKRVRMIEAWFRMP-----VRVQRLKGRNSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMRMHCAIMTTRD 338 (776) T ss_pred cccccccCCCeEEEEEEEEeee-----eehhhcccccccccceeecccchHHHHHhhcCceeehheeeeeeEEEEEecch Confidence 000112233344432110 0111111111100 00000000000 0 0 0000 0001111 Q ss_pred ----CCcc-eEEEec-CCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCc-cC Q lcl|Aclame:pro 237 ----LQRP-LFAYFK-TPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKP-TF 309 (508) Q Consensus 237 ----~~~~-~f~~~~-~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~-~~ 309 (508) .+.| ....|+ +|+.......+..|.|++..+++..+.+|...|++.+.+ +..+++++++.+....+-.. .. T Consensus 339 ~l~~~~~p~~~~~~Pfv~~~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~l--~~~~~~~~~gav~~~d~~~~~~~ 416 (776) T protein:vir:93 339 LMWAGPSPYRHNRYPFTPIWGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALYIL--STNKVLMEEGAVDDIDEFRREAA 416 (776) T ss_pred hhhccCCCCCCCccceEEecCceecccccccchHHhhhHHHHHHHHHHHHHHHhh--cCCceeeccccccchHHHHHhcc Confidence 1111 111222 233444455566799999999999999999999999876 34567777665532211000 01 Q ss_pred CcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 310 DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS 389 (508) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~ 389 (508) ..+. + ..++.+......++. .+++. .+++..++.....|...+|++...+|..++ ..|+.++.+........... T Consensus 417 rp~~-v-i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~~~tGi~~~~~G~~~n-~~Sg~ai~~~~~~~~~~~~~ 491 (776) T protein:vir:93 417 RPDA-V-MTVKNGKLGAVKMDV-DRDLA-PAHLELASRSIQMIQQVGGVTDEMLGRTTN-AVSGVAIQARQEQGSVATNK 491 (776) T ss_pred cCCc-e-eeeCCcccccccccc-CcCcc-HHHHHHHHHHHHHHHHhhCcChHHhCCCcc-hhhHHHHHHHHHHHHHHHHH Confidence 1111 1 111211111112222 34443 678888999999999999999999997654 45677788777777777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccc------------ccc-----CcceEEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 390 YLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLD------------SAS-----QPLDIECHFDDGVFVNKDKQLEED 452 (508) Q Consensus 390 ~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~------------~~~-----~~~ei~i~f~d~i~~d~~~e~~~~ 452 (508) +.+.+..+++++.+.++.+...+---. -.....+. ... ..++|+|.=.-+.+.-+++..+.+ T Consensus 492 ~~dn~~~~~~~~~~~~l~li~~~~~~~-r~~ri~~~~~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~~~s~r~~~~~~l 570 (776) T protein:vir:93 492 LFDNLRLAFQQHGEKELSLIEQYMTEE-KQFRITNSRGNPEYVTVNDGLPENDITRTKADFIIDEAEWRATMRQAAVAEL 570 (776) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-eEEEEeecCCCcceEEecccchhhhhccceeeEEEeecccchhHHHHHHHHH Confidence 777888888888888877765431100 00000000 000 112333332222222234444444 Q ss_pred HHHHhCCCCCHHH------HH---HhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC------------------CCC Q lcl|Aclame:pro 453 AKVLAIGALSKQT------FL---QRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL------------------NGG 505 (508) Q Consensus 453 ~~~~~~Gi~s~et------~l---~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~------------------~~~ 505 (508) +++.. .+.... .+ +.+++. ++..+.+.+ .++...+.-...... ... T Consensus 571 ~ql~~--~~~p~~~~~~~~~~~e~~d~p~~--~e~~~~l~~---~~~~~~p~q~~~~~e~~~~qq~q~~~~q~q~~~~~a 643 (776) T protein:vir:93 571 MEVIG--KMPPEIALTMLDLLVENMDIPNR--DELVKRIRA---VNGQKDPDQDEPTPEEIAREQAQQQQQQYNDALAIA 643 (776) T ss_pred HHHHh--hcChhhHHHHHHHHHHhcCccch--HHHHHHHHH---hhcccccchhhcchhHHHHHHHhhHHHHHHHHHhhh Confidence 44432 222221 11 112332 223232322 221111110000000 000 Q ss_pred C-CC Q lcl|Aclame:pro 506 D-GE 508 (508) Q Consensus 506 ~-g~ 508 (508) . .+ T Consensus 644 ~~~~ 647 (776) T protein:vir:93 644 TLEE 647 (776) T ss_pred hhhH Confidence 0 00 No 79 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.62 E-value=1.2e-13 Score=91.44 Aligned_cols=429 Identities=13% Similarity=0.071 Sum_probs=199.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCcc-----cc---C---ccC-----CC Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQY-----IH---Y---QAS-----DG 64 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~-----~~---~---~~~-----~~ 64 (508) |. ++....-..++..++. .+.+ ... .+++....-|-=+++- .. + ... .. T Consensus 14 m~-V~~~hp~y~a~~~~W~------~~~d----~g~----~~~k~~g~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~y~~ 78 (488) T protein:vir:96 14 ML-TPIYHPDYLVNAPQWL------RNLD----CVM----DNIKRKKQTYLPNLGAIPPEAKTDPKVTALAAKIEKDWED 78 (488) T ss_pred ec-ccccCHHHHHHhhhhh------Hhhh----hhh----HHHHHhhhhcCCCCCCccccccCcchhhhhhccchhhhHh Confidence 33 1211111111111110 0000 011 1222221111111000 00 0 000 00 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-- Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG-- 141 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-- 141 (508) .+.+ +=.-.|+++..++.++.++|.++|+++..++..++.++..+ ..-+++...++.++..++.+|.+++.+=+.. T Consensus 79 ~~~~-rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~ 157 (488) T protein:vir:96 79 LTWR-LANYVNIVNPTMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHPES 157 (488) T ss_pred hhhh-ccccCchhHHHHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCc Confidence 0000 01124999999999999999999999976555454433322 1125788999999999999999987655532 Q ss_pred ----------CeeEEEEEcCCeEEEEEEc--CC--CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEec Q lcl|Aclame:pro 142 ----------NHIKIAWVRADQFYPLQSN--TN--DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKS 207 (508) Q Consensus 142 ----------~~~~i~~v~a~~~~Pi~~d--~~--~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~ 207 (508) -++-+..++|++++=-.++ +| .++.+++.+.+...|+.....-+..+++++++ |.|++. .|.. T Consensus 158 ~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~~-g~~~v~--~~~~ 234 (488) T protein:vir:96 158 ATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLVD-GLCEFQ--EVTD 234 (488) T ss_pred CCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEEC-cEEEEE--EEec Confidence 1467899999998742111 23 25555565554443332212223344555654 455543 3322 Q ss_pred CCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 208 DSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL 287 (508) Q Consensus 208 ~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~ 287 (508) .. ..+..+|... ..+.++..||+++... .|. ...|.|-+-++..+--+.=..-|.+-+.+.. T Consensus 235 ~~--~~~e~~~~~~-----------g~~~l~~IP~v~~~~~-~~~----~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~ 296 (488) T protein:vir:96 235 DE--YSDEWTPVLI-----------NSKQSDTIPFFLASSQ-SNE----WCIDSTPLTSLAEISLSIYVMNAYSNKAMIL 296 (488) T ss_pred CC--cccceEeecC-----------CCcccCeeEEEEEecC-CCC----CCCCCCchHHHHHHHHHHHhhhhHHHHHHHh Confidence 11 1111111000 0134555666665321 111 1123333333222211110111222222333 Q ss_pred ccceeeechHHhcCCCCCCccCCcccceEeeec----CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhc Q lcl|Aclame:pro 288 GQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVL----SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTF 363 (508) Q Consensus 288 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~ 363 (508) +...+++.. + ++............-..+. ..... ..+..+++....- ..+.|+.+.+++.. . +...+ T Consensus 297 ~~~p~lv~~-~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~-g~~~~~e~~~~~l-~~~~l~~l~~qm~~-~--Ga~l~ 367 (488) T protein:vir:96 297 ANEAKWMVD-M---GDMNKTMASEMNPLGFTLAGRMPYYVKN-GDVKVIQAQFSPE-TENKVEKLFEQAVK-V--GASLF 367 (488) T ss_pred cCCceeeec-c---CCCCcccccccccceeeecccccccccC-CceeecCCchhHH-HHHHHHHHHHHHHH-H--hHhhc Confidence 333333311 1 1111110110000111111 11111 1255555554322 24556666555422 2 23333 Q ss_pred cccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEE--EeCCCc Q lcl|Aclame:pro 364 SYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIEC--HFDDGV 441 (508) Q Consensus 364 ~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i--~f~d~i 441 (508) . .++.+|||+.....+...+....+...++.++.++++.+..+..... .+ ......++++ +|.. . T Consensus 368 ~--~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w~g~~~---~~-------~~~~~~~~~in~dF~~-~ 434 (488) T protein:vir:96 368 T--QQSNETATGAAIRSGSSTASMATLGNNVEDTVRNMLRFIMRYFEGTN---LY-------VNPDELVFKLNRDYFD-V 434 (488) T ss_pred c--CCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CC-------cCccceEEEeccCCCC-c Confidence 3 23468999999998888999999999999999999998776532210 00 0111223332 2333 2 Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHh--c-----CCCCHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 442 FVNKDKQLEEDAKVLAIGALSKQTFLQR--N-----YGMTDEQAAEELAKIQSEAPTD 492 (508) Q Consensus 442 ~~d~~~e~~~~~~~~~~Gi~s~et~l~~--~-----~~~~deea~~e~~ri~~E~~~~ 492 (508) ..| .+.++.+.++..+|.||.+|++.. . |.++.| +|.+||+++.... T Consensus 435 ~ld-~~~~~al~~~~~~G~Is~~t~~~~L~~~gvl~~d~~~e---~~~~~ie~~g~~~ 488 (488) T protein:vir:96 435 EVN-PQMLQVAYAAMMEGNLPQVSWFELLKRARVVRGDMSKE---EFDEHIAELGFGM 488 (488) T ss_pred cCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCcCCccCCHH---HHHHHHhhcCCCC Confidence 223 557888999999999999998754 2 333444 5566665443322 No 80 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.59 E-value=4e-13 Score=88.57 Aligned_cols=436 Identities=11% Similarity=0.082 Sum_probs=214.3 Q ss_pred HHHhhhhhhhhHHhhccccc-cCCHHHHHHHHHHH---HHhcCCCcc------ccCcc-CCCcc--cccc--ccccchHH Q lcl|Aclame:pro 14 GAAATGVTGSLSKITDDPRI-SIDPDEYVRIQTDL---DYYSDKLQY------IHYQA-SDGIK--KKRL--KNTINMAK 78 (508) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~---~~Y~g~~~~------~~~~~-~~~~~--~~~~--~~~~n~~~ 78 (508) +...-+. ..+| ...+++......|+ ..|.|..-. +.+.+ ..+.. +.+. =.-.|+++ T Consensus 1 ~~~~~~~---------~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~ 71 (491) T protein:vir:95 1 MLTANGQ---------GSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTR 71 (491) T ss_pred CcccCCc---------cCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHH Confidence 1111111 1223 23556666666664 456674211 11100 01111 1111 11249999 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-------------Cee Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG-------------NHI 144 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-------------~~~ 144 (508) .+++.++.++|.++|++++. +.+..++..+ ..-+++...++.++..++.+|.+++.+=+.. -++ T Consensus 72 ~tl~~l~G~vfrk~p~~~~p--~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rP 149 (491) T protein:vir:95 72 RTLSGMVGSVMRKEPEINIP--KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNP 149 (491) T ss_pred HHHHHHhchhhcCCceeecc--HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCc Confidence 99999999999999999863 3333333222 1125788999999999999999987655531 147 Q ss_pred EEEEEcCCeEEEEEE--cCC--CeEEEEEEEEEEEeecC------CcEEEEEEEEEEEeCCceEEEEEEEEecCCccccC Q lcl|Aclame:pro 145 KIAWVRADQFYPLQS--NTN--DISEAAIASRTQRTESN------QTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVG 214 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~--d~~--~~~~~~f~~~~~~~~~~------~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG 214 (508) -+..++|++++=-.+ .+| +++.++|.+.....+.. ....|+.|+.- ..|.|++ ++|+..... T Consensus 150 y~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~---~~g~~~~--~v~r~~~~g--- 221 (491) T protein:vir:95 150 TIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDID---TDGNYRQ--RLFRFDAEG--- 221 (491) T ss_pred EEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeec---CCCceEE--EEEEEcCCC--- Confidence 789999999874111 122 35566665544332221 22344544432 2345544 566532211 Q ss_pred ccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceee Q lcl|Aclame:pro 215 NQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIA 293 (508) Q Consensus 215 ~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~ 293 (508) ...... .+.+.+ .-.+.++..||+++-.. ++. -..|.|-+-++..+--+.=..-|.+-+.+. .+.|..+ T Consensus 222 ~~~~~~-~~~~~~----~g~~~l~~IPfv~~~~~--~~~---~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~ 291 (491) T protein:vir:95 222 GAQEEV-VEIYPD----LGESLRGVIPFTFIGAT--NND---ATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLF 291 (491) T ss_pred cceeee-eeeeec----CCCcccCeeEEEEEecC--CCC---CCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceee Confidence 000000 000000 01134555566655321 111 111333333322220000001122333343 4555555 Q ss_pred echHHhcCCCCCCccCCcc--cceEee----ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccc Q lcl|Aclame:pro 294 VQPGMLRFDDEHKPTFDTE--QNVYVG----VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN 367 (508) Q Consensus 294 v~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 367 (508) +.. .+..+...+... ..+..+ +....+ .....+++....- ..+.|+.+-.++.. ++...+. . T Consensus 292 ~~G----~d~~~~~~~~~~~~~~i~~g~~~~~~lP~~--~~~~~ie~~~~~~-~~~~l~~~e~qm~~---~Ga~l~~--~ 359 (491) T protein:vir:95 292 IYP----GDNLTPQSFKEANPNGIKFGSRCGHNLGYG--GSAQLIQAGENNL-ARQNMLDKEQQAIQ---IGAQLIT--P 359 (491) T ss_pred eec----CcccCcchhhccCcceeEecCcCCcCCCCC--CccceeecCcchH-HHHHHHHHHHHHHH---HHHHhcc--C Confidence 421 111111100000 001111 111111 2234444442222 23444444333321 2223332 2 Q ss_pred cccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHH Q lcl|Aclame:pro 368 DGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDK 447 (508) Q Consensus 368 ~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~ 447 (508) ++.+|||+.....+...+....+...++.++.++++.++.+.. ...++. ..+.++.+|.... .+ .+ T Consensus 360 ~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G---~~~~~~---------v~i~~n~dF~~~~-~~-~~ 425 (491) T protein:vir:95 360 SQQITAESARIQRGADTSVMATIARNVSQAYTDALRWVAMMLG---KPEDSE---------VEFQLNMDFFLQP-MT-AQ 425 (491) T ss_pred CcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCCc---------eEEEeeccccccc-CC-HH Confidence 3468999999999888999999999999999999988776532 111110 1123455565433 34 44 Q ss_pred HHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 448 QLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 448 e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +++.+.++..+|.||.++++..+ -++.+.+.+++.++|++|. ...++....+|.-|+ T Consensus 426 ~~~all~~~~~G~is~~t~~~~L~~~~vl~~~~e~~~~~ie~~~----~~~~~~~~~~~~~~~ 484 (491) T protein:vir:95 426 DRAAWMADINAGLLPATAYYAALRKAGVTDWTDEDILNAIEDAP----LPSGAVTQVAGEIPQ 484 (491) T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHHhcC----CCCCccccccccchh Confidence 68888899999999999987542 3554545566777776554 344445555555555 No 81 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.59 E-value=1.3e-14 Score=96.75 Aligned_cols=463 Identities=13% Similarity=0.090 Sum_probs=202.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.-=+ |..++. ..++...+ ..+.+......+|..||.|++.... ..| +.++..+.-... T Consensus 10 ~~~~~-~~~~~~---------~~~~~a~~----~~~~~~~~~~~~~~~~y~g~~~~~~---~~~----~s~~~~~~v~~~ 68 (705) T protein:vir:88 10 MDDEQ-VLRHLD---------QLVNDALD----FNSSELSKQRSEALKYYFGEPFGNE---RPG----KSGIVSRDVQET 68 (705) T ss_pred CCHHH-HHHHHH---------HHHHHHHh----hhhhHHHHHHHHHHHHHhCCCCCcc---cCC----CCccccHHHHHH Confidence 22211 111111 11111111 1233344456777789999864321 222 233334544444 Q ss_pred HHHHHHhh----hcCcceEeeC----CcHHH----HHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC------ Q lcl|Aclame:pro 81 ARRIASVV----FNEKAEIHVK----DNNEA----DKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG------ 141 (508) Q Consensus 81 v~~~A~ll----~~e~~~i~~~----~~~~~----~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~------ 141 (508) |+.+...| |+-+..+.+. ++..+ .++++-+ .+.|+....+..++..|+..|.++++++|+. T Consensus 69 v~~~~~~l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~we~~~~~~~ 148 (705) T protein:vir:88 69 VDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTF 148 (705) T ss_pred HHHHHHHHHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEeccccccchhh Confidence 55554433 3433334332 12222 3334333 3345556778899999999999999999953 Q ss_pred -------------------------------------------CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEE-Ee- Q lcl|Aclame:pro 142 -------------------------------------------NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQ-RT- 176 (508) Q Consensus 142 -------------------------------------------~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~-~~- 176 (508) |+++|+.|+|..|++ ..+...+..+.|+...+ .. T Consensus 149 e~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~-dp~a~~~~d~~~~~~~~~~t~ 227 (705) T protein:vir:88 149 ERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLV-DRLATCIDDARFLCHREKYTV 227 (705) T ss_pred hhhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHcee-cCCCCCcccCcEEEEEEeccH Confidence 567889999999884 12222333443332111 10 Q ss_pred -ec----CCcEEEEEEEEEE---------------------------EeCCceEEE-EEEEEecCCccccCccccccccc Q lcl|Aclame:pro 177 -ES----NQTKYYTLLEFHQ---------------------------WQDNGSYQI-TNELYKSDSPDIVGNQVPLSTLP 223 (508) Q Consensus 177 -~~----~~~~~yt~lE~h~---------------------------~~~~g~~~I-~~~ly~~~~~~~lG~~v~l~~~~ 223 (508) +- ........+..+. +.+.....| .++.|...+...-|...+...+ T Consensus 228 ~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~y~~~d~~~d~~~~~~~~~- 306 (705) T protein:vir:88 228 SDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRIL- 306 (705) T ss_pred HHHHhhcCChhHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEeeeEecccCCcceeeEEEE- Confidence 00 0000000000000 000000111 1222221111000100000000 Q ss_pred cccCCCcce--eecCCCcceEEEec-CCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHh Q lcl|Aclame:pro 224 VYKELAPQV--TISGLQRPLFAYFK-TPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGML 299 (508) Q Consensus 224 ~~~~l~~~~--~~~g~~~~~f~~~~-~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~ 299 (508) ++ ..+ ...-.++++|+.++ .| ...+.+|.|+++.+.++++.+|..++++++.+. .+.+++.++.+++ T Consensus 307 -~~---g~~il~~~~~~~~PF~~~~~~p-----~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~v 377 (705) T protein:vir:88 307 -YV---GDYIISNEPWDCRPFADLNAYR-----IAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQV 377 (705) T ss_pred -Ee---CccccccccCCCCCEEEeccee-----ecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceecccccc Confidence 00 000 01122345566543 23 335668999999999999999999999998885 5788888888776 Q ss_pred cCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccc---cccchHHHH Q lcl|Aclame:pro 300 RFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN---DGVKTATEV 376 (508) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~---~~~~TAtei 376 (508) +.+.. ....++.-+. ++ . +..+..+.+.-........++.+...+...+|++.-..|.++ .+..||+++ T Consensus 378 ~~~d~--~~~~pg~vv~--~~--~--~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~Ta~~i 449 (705) T protein:vir:88 378 NLEDL--LTNEAAGIVR--VK--S--MNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSV 449 (705) T ss_pred Ccccc--cccCCCeeEE--ec--C--CCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhhHHHH Confidence 43221 1111111111 11 1 123555543333345567777777888889999988877543 335789988 Q ss_pred HHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccccccccccc-------cCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 377 VSNNSMTYQTRSSYLTMVE-KAIDELCQSIFELANAGALFDDGKPLFTLDSA-------SQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 377 ~~~~~~l~~~~~~~~~~~~-~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~-------~~~~ei~i~f~d~i~~d~~~e 448 (508) .......-.....+.+.|. ..+++|++.++++...+.--... ...+|... .....+.++-+-+ ..+.++. T Consensus 450 ~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~-~ri~g~~v~v~~~~~~~~~~v~v~v~~~-~~~~eq~ 527 (705) T protein:vir:88 450 NQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEV-FQLRGKWVAVNPANWRERSDLTVTVGIG-NMNKDQQ 527 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-EeeccchhccchHhhccCCceEEeeccc-cchHHHH Confidence 8777666666667777774 56788888887776554211111 11111100 0112222222211 1122333 Q ss_pred HHHHHHHHhC--CCCCHHHHHHhcCCCCHHHHHHHHHHHH----------------------HhccCCCCCCcccccCCC Q lcl|Aclame:pro 449 LEEDAKVLAI--GALSKQTFLQRNYGMTDEQAAEELAKIQ----------------------SEAPTDTFEGGRSAILNG 504 (508) Q Consensus 449 ~~~~~~~~~~--Gi~s~et~l~~~~~~~deea~~e~~ri~----------------------~E~~~~~~~~~~~~~~~~ 504 (508) .+....+... .+... -...+.++..+..+.++++. .+.........+-...-- T Consensus 528 ~a~l~~ll~~~q~l~~~---~~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~~~~~~ 604 (705) T protein:vir:88 528 MLHLMRIWEMAQAVVGG---GGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIK 604 (705) T ss_pred HHHHHHHHHHHHHhhcc---cchhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhhhhhhhhHHHHHHH Confidence 3222222110 00000 00011111111111111110 000000000000000000 Q ss_pred CCCC Q lcl|Aclame:pro 505 GDGE 508 (508) Q Consensus 505 ~~g~ 508 (508) .-.+ T Consensus 605 ~q~e 608 (705) T protein:vir:88 605 AQAD 608 (705) T ss_pred HHHH Confidence 0000 No 82 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.58 E-value=8.4e-13 Score=86.78 Aligned_cols=427 Identities=10% Similarity=0.068 Sum_probs=205.8 Q ss_pred hhhhhhhHHhhccccc-cCCHHHHHHHHHHH---HHhcCCCccc-c--CccC----CCcc-c-ccc-c-cccchHHHHHH Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRI-SIDPDEYVRIQTDL---DYYSDKLQYI-H--YQAS----DGIK-K-KRL-K-NTINMAKTAAR 82 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~---~~Y~g~~~~~-~--~~~~----~~~~-~-~~~-~-~~~n~~~~iv~ 82 (508) |-..+ .+ ..+| ...+++......|+ ..|.|..-.. . +.+. .+.. . .+. | .-.|+++.+++ T Consensus 1 ~~~~~--~~---~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~ 75 (489) T protein:vir:78 1 MLTEN--GQ---GSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLS 75 (489) T ss_pred CccCC--Cc---cCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHH Confidence 11000 00 1223 33566666666665 4566742111 0 1100 0111 0 111 1 12599999999 Q ss_pred HHHHhhhcCcceEeeCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-C------------eeEEEE Q lcl|Aclame:pro 83 RIASVVFNEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAMRPYIDG-N------------HIKIAW 148 (508) Q Consensus 83 ~~A~ll~~e~~~i~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~------------~~~i~~ 148 (508) .++.++|.++|++++. +.+..++..+ ..-+++...++.++..++.+|.+++.+=+.. + ++-+.. T Consensus 76 ~l~G~vfrk~p~~~~p--~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy~~~ 153 (489) T protein:vir:78 76 GMVGSVMRKEPEINIP--KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPTIAF 153 (489) T ss_pred HHhchhhcCCcceecc--HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcEEEE Confidence 9999999999999863 3333333221 1125788999999999999999987655532 1 477899 Q ss_pred EcCCeEEEEEE--cCC--CeEEEEEEEEEEEeecCCc------EEEEEEEEEEEeCCceEEEEEEEEecCCccc-cCccc Q lcl|Aclame:pro 149 VRADQFYPLQS--NTN--DISEAAIASRTQRTESNQT------KYYTLLEFHQWQDNGSYQITNELYKSDSPDI-VGNQV 217 (508) Q Consensus 149 v~a~~~~Pi~~--d~~--~~~~~~f~~~~~~~~~~~~------~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~-lG~~v 217 (508) ++|++++=-.+ .+| +++.++|.+.+...+..++ ..|+.|+. ...|.|+ .++|+...... .+..+ T Consensus 154 ~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~---~~~g~~~--~~~~r~~~~g~~~~~~~ 228 (489) T protein:vir:78 154 YTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDI---DSDGNYR--QRLFRFDAEGGAQEDVV 228 (489) T ss_pred echhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEec---CCCcceE--EEEEEeecCCcccceee Confidence 99999874211 133 3566666655443332222 22333332 2234444 35665432221 11110 Q ss_pred cccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeech Q lcl|Aclame:pro 218 PLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQP 296 (508) Q Consensus 218 ~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~ 296 (508) .+ ++ ....+.++..||+++-.. .|... .|.|-+-++..+--+.=..-|.+-+.+. .+.|..++.. T Consensus 229 ---~~--~~----~~g~~~l~~IPfv~~~~~-~~~~~----~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G 294 (489) T protein:vir:78 229 ---EI--YP----DLGESLRGVIPFTFIGAT-NNDAT----IDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYP 294 (489) T ss_pred ---EE--ec----cCCCCccCeeeEEEEecC-CCCCC----CCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeec Confidence 00 00 001134556666665321 11111 1233333322221110001122333343 4556555521 Q ss_pred HHhcCCCCCCccCC---cccceEe---eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc Q lcl|Aclame:pro 297 GMLRFDDEHKPTFD---TEQNVYV---GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV 370 (508) Q Consensus 297 ~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 370 (508) .+..+...+. +..-++- ++....+ .....+++....- ..+.|+.+.+++. . ++...+. .++. T Consensus 295 ----~d~~~~~~~~~~~~~~i~~g~~~~~~lp~~--~~~~~ie~~~~~~-~r~~l~~le~qm~-~--lGa~l~~--~~~~ 362 (489) T protein:vir:78 295 ----GENLTPQAFKEANPNGIKFGSRRGHNLGYG--GSAQLIQAGENNL-ARQNMLDKEQQAI-Q--IGAQLIT--PTQQ 362 (489) T ss_pred ----CccCCcccccccCccceeeCCcccccCCCC--CCcceeccCcchH-HHHHHHHHHHHHH-H--Hhhhhcc--CCcc Confidence 1111111111 1100000 0111111 1234444443222 2344554444432 1 2333332 3456 Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 371 KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLE 450 (508) Q Consensus 371 ~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~ 450 (508) +|||+.....+...+....+...++.++.++++.++.+.. ...++ ...+.++-+|..... + .+.++ T Consensus 363 ~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G---~~~~~---------~~~i~~n~dF~~~~~-d-~~~~~ 428 (489) T protein:vir:78 363 ITAQSARIQRGADTSVMATIARNVSQAYTDALRWVAVMLG---KPEDT---------EVEFRLNMDFFLEPM-T-AQDRA 428 (489) T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCC---------ceEEEeecccCcccC-C-HHHHH Confidence 9999999999888899999999999999999988776532 11111 012334556665333 3 44678 Q ss_pred HHHHHHhCCCCCHHHHHHh--c---CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 451 EDAKVLAIGALSKQTFLQR--N---YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 451 ~~~~~~~~Gi~s~et~l~~--~---~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+.++..+|.||.+|++.. . ...++++++ .||..+..+. -...+|| T Consensus 429 al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~~~---~ei~~~~~~~---------~~~~~g~ 479 (489) T protein:vir:78 429 AWMADINAGLLPATAYYAALRKAGVTDWTDADIK---DAVADQPLPV---------ATEVQGE 479 (489) T ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHH---HHHhhcCCCc---------ccCCccc Confidence 8889999999999998753 2 333444444 4444432111 0112222 No 83 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.56 E-value=1.2e-14 Score=96.85 Aligned_cols=421 Identities=10% Similarity=0.084 Sum_probs=200.2 Q ss_pred CChHHHHHH--HHHHHHHhhhhhhhhHHhhcccc----ccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIKD--LFWKGAAATGVTGSLSKITDDPR----ISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~--~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~ 74 (508) |+=++.-+. +-++...+++....+..-..+.. -..++... .+.....+| .+. T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~-~~~~l~~lY---------------------~~~ 58 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKL-DLKACENLY---------------------ASN 58 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCccccc-CHHHHHHHH---------------------HhC Confidence 444443221 11111112111111110000000 00000000 011111122 244 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeE Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQF 154 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~ 154 (508) .|++.+|+..|..++.+.+.|++.+++ ..+.++..+++-+++..+.+++..+..+|++++.+-+.+++.+ .+... T Consensus 59 ~l~r~iVd~~a~d~~r~g~~i~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~----~~~~~ 133 (461) T protein:vir:80 59 SIAMNIVDIISEDMVRAGWSLKTDNKE-MKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNRE----QADLS 133 (461) T ss_pred CccchhhccchHHhhcCCeeeecCCHH-HHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCcc----ccCcc Confidence 788999999999999999999986544 4466778887778999999999999999998887766543321 12222 Q ss_pred EEEEEcCCCeEEEEEEEEEEEe--------ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIASRTQRT--------ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~~~~~~--------~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) -||.. +.+....++..+... ..-....|-.-++|...+.+.+. .....+..|. T Consensus 134 ~pl~~--~~~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~------~~~~~~~~~~----------- 194 (461) T protein:vir:80 134 TAIDP--KTIKSIPYINTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLG------EEILSGTTAS----------- 194 (461) T ss_pred CCccc--ccccceeEEEeccccccchhhhcccCcCcccccceEEEEecccccc------ccccccccCc----------- Confidence 33311 111122222111100 00000011111111111000000 0000000000 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~ 306 (508) . ...++- .| ...|. +....+...|+|++..+.+.|.+++.+.-....-+......++-.+.+-...++.. T Consensus 195 --~-~~~iH~-SR--ii~~~----~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~ 264 (461) T protein:vir:80 195 --T-SEQIHR-SR--IIHEQ----GLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDK 264 (461) T ss_pred --c-ceEEcc-cc--EEEec----CCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHH Confidence 0 001111 11 11221 11112234599999999999999999887666555433333432221111111111 Q ss_pred ----ccCCc---ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-ccccccccchHHHHHH Q lcl|Aclame:pro 307 ----PTFDT---EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDGVKTATEVVS 378 (508) Q Consensus 307 ----~~~~~---~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~~~TAtei~~ 378 (508) ..+.. +..++. .+.+ ..+++++.+ +......++.+.+.|...++++... ||...++.+|+.+=. T Consensus 265 ~~~~~~~~~~~~~~g~~~---~d~~--e~~e~~~~~--lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~- 336 (461) T protein:vir:80 265 ANLTAMLDFMFRTEALAI---IKGD--EQLTKESTN--VSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDV- 336 (461) T ss_pred HHHHHHHHHhcCCceEEE---EcCC--cceEEEecC--cCCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHH- Confidence 11111 111211 1222 236766654 3567788888889999999998875 565555566654322 Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH------ Q lcl|Aclame:pro 379 NNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE------ 451 (508) Q Consensus 379 ~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~------ 451 (508) +..+..+..+| ..++..|+.|+..+++-.. + +.....+...+++|.|+.-...+..+.++. T Consensus 337 --~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~--~--------~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~ 404 (461) T protein:vir:80 337 --MNYYARVSSIQENRLRPQLEYLTRLLMWASD--D--------CGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAE 404 (461) T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c--------cccccCccccceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 33466677766 5688888888887765221 1 011222334689999999888887666553 Q ss_pred -HHHHHhCCCCCHHHHHHh---cCCCCHH------H-HHHHHHHHHHhccCCCCCCcccccCCCCCC Q lcl|Aclame:pro 452 -DAKVLAIGALSKQTFLQR---NYGMTDE------Q-AAEELAKIQSEAPTDTFEGGRSAILNGGDG 507 (508) Q Consensus 452 -~~~~~~~Gi~s~et~l~~---~~~~~de------e-a~~e~~ri~~E~~~~~~~~~~~~~~~~~~g 507 (508) +.+++.+|++|.++++.. ..+.++. + ..+++++...+.+.. ..++| T Consensus 405 a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------e~~~g 461 (461) T protein:vir:80 405 ADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAYAK----------KNADG 461 (461) T ss_pred HHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhccccccc----------cCCCC Confidence 566677889988876542 2222211 0 112222222211111 12222 No 84 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.56 E-value=5.6e-13 Score=87.76 Aligned_cols=471 Identities=10% Similarity=0.084 Sum_probs=228.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCC-ccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDG-IKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~-~~~~~~~~~~n~~~~ 79 (508) =.++++++.+|+. ......+.+....+..+||.|+ .| ....... .-..+..+..|.-+- T Consensus 29 ~~~~~~~~~~~~~------------------~~~~~~~~r~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~N~i~~ 88 (711) T protein:vir:10 29 RALLATARERARD------------------GATYWKDNWEAAEDDLKFLGGE-QW-PSQVRTERELEQRPCLVNNVLPT 88 (711) T ss_pred HHHHHHHHHHHHH------------------HHhhhHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhcCCCcEEEcchHH Confidence 2233333333321 1122344556677888999886 22 2111000 112344567899999 Q ss_pred HHHHHHHhhhcCcceEeeCCc------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDN------------------------------NEADKFLNDVLEDNDFKNKFEEALEKGVA 129 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~------------------------------~~~~~~l~~~l~~n~f~~~~~~~~~~a~~ 129 (508) +|+...++--..++.+.+... +.++..+.-+.+.++.......+...++. T Consensus 89 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~af~d~~~ 168 (711) T protein:vir:10 89 FVDQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEYNCDAETEYDIAFQGAVE 168 (711) T ss_pred HHHHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhh Confidence 999999998888777765431 12233444455667888889999999999 Q ss_pred cCCEEEEEEEe-------CCeeEEEEE-cCCeEEEEEEcC--CCeEEE--EEEEEEEEee-------------------c Q lcl|Aclame:pro 130 LGGFAMRPYID-------GNHIKIAWV-RADQFYPLQSNT--NDISEA--AIASRTQRTE-------------------S 178 (508) Q Consensus 130 ~G~~~~~~~~d-------~~~~~i~~v-~a~~~~Pi~~d~--~~~~~~--~f~~~~~~~~-------------------~ 178 (508) .|.+|+.+++| ++.++|..| +|..+++ ..+. -++..| +|..++...+ . T Consensus 169 ~G~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~yp~~a~~~~~~~~~~ 247 (711) T protein:vir:10 169 SGMGYLRVRSDYLADDSFEQDLIIEAIQNQFSVTI-DPDAKKRDRSDMNWCLIDDTMSKEKFKALYPDATAEPVYEDSVA 247 (711) T ss_pred cCcceEEEEecccCCCCCCCCeEEeeecChhheee-CccccccChhhhcceeeeecCCHHHHHHhCCchhhhhhhccccc Confidence 99999999875 267888877 5887662 1111 122333 2332221100 0 Q ss_pred -----CCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccc-c--------------------ccccc-cCCCcc Q lcl|Aclame:pro 179 -----NQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPL-S--------------------TLPVY-KELAPQ 231 (508) Q Consensus 179 -----~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l-~--------------------~~~~~-~~l~~~ 231 (508) ...+..+..|++.-+.. ...++...+... ...+. . ....| .-+... T Consensus 248 ~~~~~~~~~~vrv~E~~~r~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~G~ 320 (711) T protein:vir:10 248 DYDTWFTEKSVRVSEYFTREPV-----IREIALLSDGRS--FWLDALEDIVDELLEAGISIVRTRKVKTFKTYWRKITGA 320 (711) T ss_pred ccCcccCcceeeEEEEEeeeee-----eeEEEeecCCce--eccCcchhHHHHHHhcCchhhhhhhhceeeEEEEEEecc Confidence 00111233444321110 111111111100 00000 0 00000 000000 Q ss_pred eeecCCCcceEEEec-CCcccc--ccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCC-C Q lcl|Aclame:pro 232 VTISGLQRPLFAYFK-TPGANN--INIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEH-K 306 (508) Q Consensus 232 ~~~~g~~~~~f~~~~-~~~~n~--~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~-~ 306 (508) ..+.+-.-.++.+|| +|+.-. ....+..+-|++.++++.++.+|...|.+++.+- .+..++++++..+....+. . T Consensus 321 ~~L~~~~p~~~~~~P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~~gai~~~~~~~~ 400 (711) T protein:vir:10 321 NVLEGPVEIPSTTIPVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGSEGNVEGREDEWE 400 (711) T ss_pred eeecCCCCCCCCcccEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeecCcccCChHHHHH Confidence 011111001112222 122111 1233444556799999999999999999999984 5677888877766421110 0 Q ss_pred -ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 307 -PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 307 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) ....+ .-+..++.+......++..++.--..+++..++.....|...+|++...+|..++ ..|+.+|.+....... T Consensus 401 e~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n-~~Sg~ai~~~q~qg~~ 477 (711) T protein:vir:10 401 QANTKN--FSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGN-ETSGRAIIARQRQGDR 477 (711) T ss_pred hccccC--CCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCcc-chHHHHHHHHHHHHHH Confidence 00111 1123333333333456666544445778899999999999999999999988754 4578888888877777 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc--------------------------cCcceEEEEeCC Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSA--------------------------SQPLDIECHFDD 439 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~--------------------------~~~~ei~i~f~d 439 (508) ....+...+..+++.+.+.++.+...+---. -....++... ...++|+|+=.- T Consensus 478 ~l~~~~dn~~~~~~~~g~~ll~li~~~~~~e-r~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi~~g~~Dv~i~~~p 556 (711) T protein:vir:10 478 GSFAFIDNLTKSIRRVGKILVEMIPHIYDTE-RVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDLNVQKYDVVVTTGP 556 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEecCCCCcceEEecccccccccccceeeeccceeeeEEEEeecc Confidence 7777777788888887777777754432111 0111111100 011233332222 Q ss_pred CccCCHHHHHHHHHHHHhCCCCCHH------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCC---------- Q lcl|Aclame:pro 440 GVFVNKDKQLEEDAKVLAIGALSKQ------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILN---------- 503 (508) Q Consensus 440 ~i~~d~~~e~~~~~~~~~~Gi~s~e------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~---------- 503 (508) +.+.-+++..+.++++. +.++.- .++...+.-.-++..+ +++.-.++..+..+...... T Consensus 557 ~~~s~r~~~~~~l~ql~--~~~p~~~~~~~~~il~~~d~p~~~el~e---~lr~~~~~~~~~~~~~~~~qq~~~e~qq~~ 631 (711) T protein:vir:10 557 AFATQRIEAAEAMIQFA--QAVPSAAAVMADLIAQNMDWPGADVIAE---RLKKIVPPNVLSKDEREAIEEDMPEQTEPT 631 (711) T ss_pred CchhHHHHHHHHHHHHH--hhcchhhhHHHHHHHHhcCCCCHHHHHH---HHHhhcCcccCcchhhhHHHHHHHHHHHHH Confidence 22222333333444432 333321 1222222222233333 33322222211111000000 Q ss_pred --------CCCCC Q lcl|Aclame:pro 504 --------GGDGE 508 (508) Q Consensus 504 --------~~~g~ 508 (508) -..++ T Consensus 632 ~~~q~~~~~~q~~ 644 (711) T protein:vir:10 632 PEQQVEMAKSQAD 644 (711) T ss_pred HHHHHHHHHHHHH Confidence 00000 No 85 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.49 E-value=1.9e-12 Score=84.84 Aligned_cols=468 Identities=13% Similarity=0.106 Sum_probs=199.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHH---HHhcCCCccccC-------ccCCCcccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDL---DYYSDKLQYIHY-------QASDGIKKKRL 70 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~---~~Y~g~~~~~~~-------~~~~~~~~~~~ 70 (508) |+|=.. -+.|+..-|--...|-..+-+.--.....+......|. ++|.+......| ....+....+. T Consensus 1 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~rs 77 (651) T protein:vir:80 1 MKLATT---TTDKNRQTYDETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRSVGDVNADWRH 77 (651) T ss_pred Cccccc---ccchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhccccccccCCCCCCCCc Confidence 222100 00000000000000000000000000001111122332 233332211111 11122222344 Q ss_pred ccccchHHHHHHHHHHhhh----cCcceEeeC---CcH---HHHHHHHHHH----HhhhHHHHHHHHHHHHhhcCCEEEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVF----NEKAEIHVK---DNN---EADKFLNDVL----EDNDFKNKFEEALEKGVALGGFAMR 136 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~----~e~~~i~~~---~~~---~~~~~l~~~l----~~n~f~~~~~~~~~~a~~~G~~~~~ 136 (508) ++..+.....|+.+...|+ +.+.-+.+. +.+ ...+.++.++ ..++|......++.+|+.+|.++++ T Consensus 78 ~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~k 157 (651) T protein:vir:80 78 KITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLA 157 (651) T ss_pred cccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEE Confidence 5556666666665544443 332224321 111 2334455554 4678888998999999999999999 Q ss_pred EEEeC--------------------------------CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecC----- Q lcl|Aclame:pro 137 PYIDG--------------------------------NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESN----- 179 (508) Q Consensus 137 ~~~d~--------------------------------~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~----- 179 (508) +|||. +.++|+.|||..|++ .....++..+.|+.+.+..... T Consensus 158 v~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~-dp~a~~~~d~~~v~~~~~t~~~l~~l~ 236 (651) T protein:vir:80 158 LPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFY-DPNVTDPNRGAFIRKLTKTKADILNLL 236 (651) T ss_pred EeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeee-cCCCcCccccceeeeeeeeHHHHHHHH Confidence 99962 357889999999985 3334455566665443321110 Q ss_pred -CcEE----------------------------------------EEEEEEEEE-eCCc-eEEEEEEEEecCCccccCcc Q lcl|Aclame:pro 180 -QTKY----------------------------------------YTLLEFHQW-QDNG-SYQITNELYKSDSPDIVGNQ 216 (508) Q Consensus 180 -~~~~----------------------------------------yt~lE~h~~-~~~g-~~~I~~~ly~~~~~~~lG~~ 216 (508) .+.+ +..+|+|.. ...| .+...+..+. |.. T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~-------g~~ 309 (651) T protein:vir:80 237 SEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTYHDVVVTIM-------GNE 309 (651) T ss_pred hcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEEeeccCCceEEEEEEEc-------CcE Confidence 0000 011111110 0000 0000000000 000 Q ss_pred c-cccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeee Q lcl|Aclame:pro 217 V-PLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAV 294 (508) Q Consensus 217 v-~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v 294 (508) | .....| ..++ . ||+.++ -....++.+|+|....+.+.+..+|.......+... .+.+.+.| T Consensus 310 il~~~~~~---------~~~~--~-Pf~~~~----~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v 373 (651) T protein:vir:80 310 VLRFEQNP---------YWCG--R-PFVIGT----YIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTL 373 (651) T ss_pred EecccccC---------CCCC--C-Ceeeec----ceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEe Confidence 0 000000 0011 1 343332 122335789999999999999999999999988774 67888787 Q ss_pred chHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccC-CHHHHHHHHHHHHHHHHHHhCCCchhccccc--cccc Q lcl|Aclame:pro 295 QPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPI-RTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN--DGVK 371 (508) Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~--~~~~ 371 (508) +.+.+.. ++.. .+.++.-++ +.. . ..+..+++.- ........++.+...+...+|++.-..|.+. .+.. T Consensus 374 ~~d~~~~-~~~l-~~~pg~vi~--~~~--~--~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~ 445 (651) T protein:vir:80 374 RSDGLLQ-PEDV-YTEPGKVFL--VSD--H--GDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERV 445 (651) T ss_pred cCCcccc-HHHh-hcCCCceEE--ecC--C--CCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhc Confidence 6543211 1111 111221111 111 1 1245554432 2344556677777788888888876666543 3467 Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccccccccccc-------ccCcceEEEEeCCCccC Q lcl|Aclame:pro 372 TATEVVSNNSMTYQTRSSYLTMVEK-AIDELCQSIFELANAGALFDDGKPLFTLDS-------ASQPLDIECHFDDGVFV 443 (508) Q Consensus 372 TAtei~~~~~~l~~~~~~~~~~~~~-al~~li~~i~~l~~~~~~~~~~~~~~~~~~-------~~~~~ei~i~f~d~i~~ 443 (508) |||||.............+.+.|.. .++.|++.++.+...+.-.+... ...+.. .....+++.+++- ++. T Consensus 446 TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~-ri~~~~~~~~~~~~i~~~dl~~~~~i-v~~ 523 (651) T protein:vir:80 446 TAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMV-RVAGDEAGAYEYYELDVEDLQKEVRL-VPI 523 (651) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccce-eecccccccccccccCccceeeeeee-eec Confidence 9999999988888888888888876 68889988888876544222111 010100 0011123333332 111 Q ss_pred C------HHHHHHHHHHHHhC-CCCC---H----HHH---HHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCC Q lcl|Aclame:pro 444 N------KDKQLEEDAKVLAI-GALS---K----QTF---LQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGD 506 (508) Q Consensus 444 d------~~~e~~~~~~~~~~-Gi~s---~----et~---l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~ 506 (508) . +...+++..+.... |..+ . ... +.+.-|+.+-+ .-+... ..++...++........... T Consensus 524 g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~~~~~--~~l~~~-~q~~~~~~~~~~~~q~~~~~ 600 (651) T protein:vir:80 524 GSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGFEEPE--AYLKQQ-DQQAPANPQEALLSQAKDVG 600 (651) T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCCCCcH--HhcCCC-ccchhhhhhHHHHhhHHHHH Confidence 1 22233333332221 1111 1 000 11122221100 000000 00000000000000000000 Q ss_pred CC Q lcl|Aclame:pro 507 GE 508 (508) Q Consensus 507 g~ 508 (508) ++ T Consensus 601 ~~ 602 (651) T protein:vir:80 601 GQ 602 (651) T ss_pred HH Confidence 00 No 86 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.44 E-value=1.4e-12 Score=85.61 Aligned_cols=397 Identities=13% Similarity=0.100 Sum_probs=193.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCH--HHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDP--DEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~ 78 (508) |.+.+...+++-..+.. +.+.+.+. .......+...+| .+..+++ T Consensus 1 ~~~~D~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~a~Y---------------------~~~~l~~ 47 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSK------------QEQTYYSPSLSLTDDLVQLEALW---------------------RDNWIAN 47 (437) T ss_pred CchhhhhHhHHhcCCCc------------cccceeecCccccccHHHHHHHH---------------------HhCchhh Confidence 88777777764221111 11100000 0000011111222 2347899 Q ss_pred HHHHHHHHhhhcCcceEeeCCcH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeE-----------E Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNN-EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIK-----------I 146 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~-~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~-----------i 146 (508) .+|+..|.-++.+...|++++.+ ..-+.+++.++.-+++..+.+++..+-.+|++++.+..|+..+. + T Consensus 48 ~~vd~~a~d~~r~~~~i~~~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~ 127 (437) T protein:vir:52 48 KVCIKRPEDMVRNWREIYSNDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRL 127 (437) T ss_pred HHhhcchHHhhcCCceEecCCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEE Confidence 99999999999999999875533 22246777787778899999999999999999888777653211 2 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .++++.++-|...+.... .. ..|-.-++ |+|. +.+. +..|.-+.+ T Consensus 128 ~v~~~~~v~~~~~~~~dp--------------~s-~~fg~p~~--------y~v~-----~~~~---~~~iH~SRi---- 172 (437) T protein:vir:52 128 IILPKWKISPTGTKDDDV--------------LS-PNFGRYSE--------YSIL-----GGSQ---SITVHHSRL---- 172 (437) T ss_pred EEechhhccccccccccc--------------cc-cccCcceE--------EEEe-----cCCc---ceeEcccee---- Confidence 222222222211100000 00 00111111 1111 0000 001100000 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeech---HHhcCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQP---GMLRFDD 303 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~---~~~~~~~ 303 (508) +.+.| .++|... +.-.|+|++..+.+.|..++.+.-....-+...+..++-.. +.+..+. T Consensus 173 -----i~~~~--------~~~~~~~----~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~ 235 (437) T protein:vir:52 173 -----IILNA--------NDAPLSD----NDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGM 235 (437) T ss_pred -----EEecC--------ccCCCcc----ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCc Confidence 11111 1122221 23359999999999999999877666555544444444222 2333222 Q ss_pred CCC-----ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhc-cccccccchHHHHH Q lcl|Aclame:pro 304 EHK-----PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTF-SYSNDGVKTATEVV 377 (508) Q Consensus 304 ~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~~TAtei~ 377 (508) +.. ..+...++....+..+.+ ..+++++.+ .......++....+|...+|++...+ |...+|.+|+.+=. T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~e~~~~~--~sgl~~~l~~~~~~iaaa~~iP~t~L~G~s~~Glasge~D~ 311 (437) T protein:vir:52 236 ENEVASVISAVQEIKSATNSLLLDAE--NEYDRKELT--FTGLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDI 311 (437) T ss_pred HHHHHHHHHHHHHhcCCCceEEEcCC--cceEEEecC--cCCHHHHHHHHHHHHHHHhcCchhhhcCcCcccccccHHHH Confidence 110 001111111222222222 236666554 34566777888889999999988654 54455666654333 Q ss_pred HHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH----- Q lcl|Aclame:pro 378 SNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE----- 451 (508) Q Consensus 378 ~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~----- 451 (508) .. .|..+..+| ..++..|+.|+..++.-+. +.. +.+++|.|+.-...+..+.++. T Consensus 312 ~~---yyd~i~~~Qe~~l~p~le~l~~~i~~~~~-------------g~~---~~~~~~~f~pL~~~s~kekae~~~~~a 372 (437) T protein:vir:52 312 QN---YHEAIRRLQETRLRPIFEIIDPLICNELF-------------GGL---PADWWFEFVPLTTVKQEQQINMLNTFA 372 (437) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCC---CCcceEEeCCcCCcCHHHHHHHHHHHH Confidence 33 455666666 4578888888776543210 111 2368899998777775555543 Q ss_pred --HHHHHhCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHhcc-CCCCCCcccccCCCCCCC Q lcl|Aclame:pro 452 --DAKVLAIGALSKQTFLQR------NYGMTDEQAAEELAKIQSEAP-TDTFEGGRSAILNGGDGE 508 (508) Q Consensus 452 --~~~~~~~Gi~s~et~l~~------~~~~~deea~~e~~ri~~E~~-~~~~~~~~~~~~~~~~g~ 508 (508) +.+++.+|+++...++.. ++.+++++.+.. + ..++. ....+.+...+....++. T Consensus 373 ~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 435 (437) T protein:vir:52 373 TAANTLIQNGVLNEYQIANELRESGLFANISAEHIEEL-K--NADEFAGNFEEPEKMEGAQVQNSE 435 (437) T ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCccccccc-c--CCCCCCCccCCCCCCCCCCCCCCC Confidence 555667788877666543 233444322110 0 00000 000000000111111111 No 87 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.43 E-value=1.7e-11 Score=79.68 Aligned_cols=430 Identities=10% Similarity=0.062 Sum_probs=209.5 Q ss_pred CChHHHHHHHH--HHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCc-----cccCccC-C----Cc--- Q lcl|Aclame:pro 1 MGLIQRIKDLF--WKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQ-----YIHYQAS-D----GI--- 65 (508) Q Consensus 1 m~~~~~ik~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~-----~~~~~~~-~----~~--- 65 (508) |+||+|+..+| ++...++.....+. -|.+-.. |+..... + .. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~-----------------------~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~ 57 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQ-----------------------AYEAVKTTRTHKARRENRTADQLSQYGAVS 57 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHh-----------------------hccccCcccccCCCCCCCChHHHHHHHHHH Confidence 99999999988 33333332112111 1221110 1100000 0 00 Q ss_pred -cc--cccccccchHHHHHHHHHHhhhcC-cceEee----CC---cHHHHHHHHHHHH----------hhhHHHHHHHHH Q lcl|Aclame:pro 66 -KK--KRLKNTINMAKTAARRIASVVFNE-KAEIHV----KD---NNEADKFLNDVLE----------DNDFKNKFEEAL 124 (508) Q Consensus 66 -~~--~~~~~~~n~~~~iv~~~A~ll~~e-~~~i~~----~~---~~~~~~~l~~~l~----------~n~f~~~~~~~~ 124 (508) +. +.....-++++..++.+++.+.|. .+.+.. .+ ++..++.++..+. ..+|......++ T Consensus 58 lr~RaRdl~rNn~~a~~av~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~ 137 (502) T protein:vir:79 58 LREQARYLDNNHDLVIGVFDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLML 137 (502) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHH Confidence 00 001112368899999999999986 333321 11 1223444444443 235666677777 Q ss_pred HHHhhcCCEEEEEEEeCC---------eeEEEEEcCCeEEEEEEcCC-CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC Q lcl|Aclame:pro 125 EKGVALGGFAMRPYIDGN---------HIKIAWVRADQFYPLQSNTN-DISEAAIASRTQRTESNQTKYYTLLEFHQWQD 194 (508) Q Consensus 125 ~~a~~~G~~~~~~~~d~~---------~~~i~~v~a~~~~Pi~~d~~-~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~ 194 (508) ...+.-|.++.++.++.. .+++..++|+.+ |...+.+ .+...| |+ .+ T Consensus 138 r~~~~dGE~f~~~~~~~~~~~~~g~~~~l~lq~iepd~l-~~~~~~~~~i~~GV-------------------e~---d~ 194 (502) T protein:vir:79 138 RTWLRDGEVFAQMVSGRINSLTPSAGVHFWLEALEPDFI-PMTSDESNRLNQGV-------------------FV---DD 194 (502) T ss_pred HHHHhCCceEEEEeecccCccCCCcccceEEEEecchhc-CCCCCCCCeeEeee-------------------EE---CC Confidence 788888999988888542 258899999995 5423322 232222 11 11 Q ss_pred CceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHH Q lcl|Aclame:pro 195 NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDI 274 (508) Q Consensus 195 ~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~l 274 (508) .|. .+-|.+++.+..+ +.......+| ..-+.++ ......+-..|+|.|+.++..+..| T Consensus 195 ~Gr-~~aY~i~~~hPgd--~~~~~~~rvp---------------A~~vlH~----f~~~r~gQ~RGis~lapvl~~l~~l 252 (502) T protein:vir:79 195 WGR-PEKYLVYKSRPVS--GRQMETKEVD---------------AERMLHL----KFVRRLHQMRGTSLLSGVLIRLSAL 252 (502) T ss_pred CCc-eEEEEEeecCCCC--CcccceeEec---------------hhheEEe----ecccCCccccCCchHHHHHHHHHHH Confidence 111 1122223322211 0000111111 1112222 2223334456999999999999999 Q ss_pred HHHHHHHHHHHH-hccceeeechHHhcC-CCCCCccCCcccceE--eeecCC-CCCCCcceEeeccCCHHHHHHHHHHHH Q lcl|Aclame:pro 275 NDTHDQFIWEIR-LGQKHIAVQPGMLRF-DDEHKPTFDTEQNVY--VGVLSD-DNNGLGVKDMTTPIRTVQYKDAIDHFI 349 (508) Q Consensus 275 D~~~s~~~~e~~-~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~~dir~e~~~~~l~~~l 349 (508) |.-.+.-...-+ .+.-..||-...-.. .+.+..........- -+.... -..|..++.++|.-+..++..-+..++ T Consensus 253 ~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~l 332 (502) T protein:vir:79 253 KEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQL 332 (502) T ss_pred hHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHH Confidence 976555433322 334444442211000 000000000000110 010011 122345888899888889999999999 Q ss_pred HHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHhhhccccccccccccccc Q lcl|Aclame:pro 350 KEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELC-QSIFELANAGALFDDGKPLFTLDSA 427 (508) Q Consensus 350 ~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li-~~i~~l~~~~~~~~~~~~~~~~~~~ 427 (508) +.|....|+++..++.+-++. .++.+......+++.. .+..+...+.+-| +..+..+-+.+..+. ..+... T Consensus 333 r~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~---~q~~~~~~~~~pi~~~~l~~a~l~G~i~~----p~~~~~ 405 (502) T protein:vir:79 333 RAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLI---LQDWFIGAVTRPMYRAWLKQAVASGVIRL----PRDLDR 405 (502) T ss_pred HHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CCCCCc Confidence 999999999999998885432 2233333333333333 3333333333332 222333322222211 011111 Q ss_pred cCcceEEEEe--CCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHH----hccCCC------C- Q lcl|Aclame:pro 428 SQPLDIECHF--DDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQS----EAPTDT------F- 494 (508) Q Consensus 428 ~~~~ei~i~f--~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~----E~~~~~------~- 494 (508) ..-..+.| .--...|+.++++.....+.+|+.|.+..+... |.|.+++.+++++-++ --.... + T Consensus 406 --~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~ 482 (502) T protein:vir:79 406 --SSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAG-GRNPDDVKRRRKAEIDENRKLDLVFDTDPASDKG 482 (502) T ss_pred --hhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC Confidence 11234444 555567999999999999999999999988776 7777766555544322 111100 0 Q ss_pred -----CCcccccCCCCCCC Q lcl|Aclame:pro 495 -----EGGRSAILNGGDGE 508 (508) Q Consensus 495 -----~~~~~~~~~~~~g~ 508 (508) ........++.+.| T Consensus 483 ~~~~~~~~~e~~~~~~~~e 501 (502) T protein:vir:79 483 GSSAATKRQEPQHTDDQSE 501 (502) T ss_pred CCCCCCCCCCCCCCCCCCC Confidence 00000111111111 No 88 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.34 E-value=8.2e-11 Score=75.88 Aligned_cols=439 Identities=10% Similarity=0.044 Sum_probs=204.7 Q ss_pred CChHHHHHHHHH--HHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-CCc------cccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFW--KGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DGI------KKKRLK 71 (508) Q Consensus 1 m~~~~~ik~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~------~~~~~~ 71 (508) |+||+|+...|- +...++-....+...- -+ +. .+...| .++....... ... +-+... T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~----aa-~~---~r~~~~------~~~~~s~~~~i~~~~~~lr~RaRdL~ 66 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYE----AA-RP---GRTHKA------KRQPLGADTSLQKSAVSMREQCRKLD 66 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhcccc----cc-Cc---cccccc------cCCCCChHHHHHHHHHHHHHHHHHHH Confidence 999999888872 2222221111111000 00 00 000000 0000000000 000 000001 Q ss_pred cccchHHHHHHHHHHhhhcC-cceEee----CCcH---HHHHH----HHHHHHh------hhHHHHHHHHHHHHhhcCCE Q lcl|Aclame:pro 72 NTINMAKTAARRIASVVFNE-KAEIHV----KDNN---EADKF----LNDVLED------NDFKNKFEEALEKGVALGGF 133 (508) Q Consensus 72 ~~~n~~~~iv~~~A~ll~~e-~~~i~~----~~~~---~~~~~----l~~~l~~------n~f~~~~~~~~~~a~~~G~~ 133 (508) ...++++.+++.+++.+.|. .+.+.. .+.+ ..++. ++.+.++ .+|......++...+.-|.+ T Consensus 67 rNn~~a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~ 146 (548) T protein:vir:95 67 EDHDLVTGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEG 146 (548) T ss_pred hcChHHHHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCce Confidence 12368899999999999984 333321 1112 12222 2333222 34777777788888999999 Q ss_pred EEEEEEeCC---------eeEEEEEcCCeEEEEEEc--CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEE Q lcl|Aclame:pro 134 AMRPYIDGN---------HIKIAWVRADQFYPLQSN--TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITN 202 (508) Q Consensus 134 ~~~~~~d~~---------~~~i~~v~a~~~~Pi~~d--~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~ 202 (508) +++..++.. .+++..++|+.+ +...+ .+.+...| |+ .+.|. .+-| T Consensus 147 f~~~~~~~~~~~~~g~~~~~~lqliepd~l-~~~~~~~~~~i~~GI-------------------E~---D~~Gr-p~aY 202 (548) T protein:vir:95 147 LAQKLMGRVPNYTFATSVPFALELLEPDYL-PFSYNNLSKGIVQGI-------------------ER---DTWRR-KRAY 202 (548) T ss_pred EEEeeecccccccCCcccceEEEEechhhc-CCCCCCCCCceeeee-------------------EE---CCCCc-eEEE Confidence 988888631 258899999984 32222 22232222 11 11111 1122 Q ss_pred EEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFI 282 (508) Q Consensus 203 ~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~ 282 (508) .+++.+..+.. ......+|. -++..-+.+ +......+-.-|+|.|+.++..+..|+.-.+.-. T Consensus 203 ~i~~~hPgd~~----~~~~~~~~~---------rvpA~~VlH----if~~~r~gQ~RGvs~lapvl~~l~~l~~y~dael 265 (548) T protein:vir:95 203 HLLKDHPGNLQ----TLGGSLAVK---------RVEAERIIH----IAYRKRIGQNRGVPMLHAVLIRLADLKDYEESER 265 (548) T ss_pred EEeecCCCccc----cccccccee---------eechhHhee----cccccCCccccCcchHHHHHHHHHHHhHHHHHHH Confidence 23332221100 000001111 111111222 2223334455699999999999999997665544 Q ss_pred HHHH-hccceeeechHHhcCCCCCC--ccCCcccceEeee----cCC-CCCCCcceEeeccCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 283 WEIR-LGQKHIAVQPGMLRFDDEHK--PTFDTEQNVYVGV----LSD-DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEV 354 (508) Q Consensus 283 ~e~~-~~~~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~-~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~ 354 (508) ..-+ .+--..||-.. ++++. ............+ ... -..+..++.++|+-+..++..-++.+++.|.. T Consensus 266 ~~aki~A~~a~fi~~~----~~~~~~~~~~~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAa 341 (548) T protein:vir:95 266 VAARISAALAMYIKKG----NPDSYTVEPGKDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGA 341 (548) T ss_pred HHHHHhhhheeeeecC----CCccccCCCCcccccccccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHh Confidence 4322 23333444211 11110 0001000000111 011 11233588888887888999999999999999 Q ss_pred HhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHhhhccccccccccccccccCcce Q lcl|Aclame:pro 355 QIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDE-LCQSIFELANAGALFDDGKPLFTLDSASQPLD 432 (508) Q Consensus 355 ~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~-li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~e 432 (508) ..|+++..++.+-++. .++.+......+.+.. .+..+...+.+ +.+..+..+-+.+..+ ..+.. ....- T Consensus 342 glGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~---~q~~~i~~~~~Pi~~~wle~a~l~G~i~-----lP~~~-~~~~~ 412 (548) T protein:vir:95 342 GTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDL---LQHEFIDYWCRPVYRSWLQMYLLARKER-----LPADV-DHRTL 412 (548) T ss_pred hcCCCHHHHhcccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCcC-----CCCCC-Cchhh Confidence 9999999998885532 2233333333333333 23233333333 3333333332222211 11111 11222 Q ss_pred EEEEe--CCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhcc---CCCCCCccc----ccCC Q lcl|Aclame:pro 433 IECHF--DDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAP---TDTFEGGRS----AILN 503 (508) Q Consensus 433 i~i~f--~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~---~~~~~~~~~----~~~~ 503 (508) +.+.| .--..+|+.++++.....+.+|+.|.+..+... |.|-+++.+++++-.+... -..+..+.. +... T Consensus 413 ~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~-G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~ 491 (548) T protein:vir:95 413 YAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARAR-GRDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMD 491 (548) T ss_pred eeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccC Confidence 45666 444567999999999999999999999988874 7777776555544332110 000000000 0000 Q ss_pred C--------------CCCC Q lcl|Aclame:pro 504 G--------------GDGE 508 (508) Q Consensus 504 ~--------------~~g~ 508 (508) . .-|| T Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (548) T protein:vir:95 492 PVEAVQKVYLGVGKMLTAD 510 (548) T ss_pred CCCchhhhccccccccccc Confidence 0 0111 No 89 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.29 E-value=1.8e-10 Score=73.98 Aligned_cols=468 Identities=9% Similarity=0.046 Sum_probs=223.7 Q ss_pred CC-hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-CccccccccccchHH Q lcl|Aclame:pro 1 MG-LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~-~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~n~~~ 78 (508) +. +..+....|. ..+.-.++-+....++.+||.|.. | ...... -....+..++.|.-+ T Consensus 17 ~~~~~~~~l~~~~------------------~~~~~~~~~r~~a~~d~~fy~G~Q-w-~~~~~~~l~~~g~p~~~~N~i~ 76 (714) T protein:vir:10 17 TPRFSQRQLLSLC------------------SDIDSQPLWRDAANKACAYYDGDQ-L-APEVIQVLKDRGQPMTIHNLIA 76 (714) T ss_pred hhhhhHHHHHHHH------------------HHHhhhHHHHHHHHHHHHhhcCCC-C-CHHHHHHHHhcCCCcEEeccHH Confidence 11 1111111110 001112344567888899999863 2 211100 011234567889999 Q ss_pred HHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----Cee Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----NHI 144 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----~~~ 144 (508) .+|+...++--...+.+.+.. ++ .++..+..+.+.++.......+...++..|-+|+..++|. +.+ T Consensus 77 ~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~d~~~~~i 156 (714) T protein:vir:10 77 PTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSEPFGPEF 156 (714) T ss_pred HHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeeccCCCCCCe Confidence 999999999988888887642 11 1233445555677888899999999999999999999973 578 Q ss_pred EEEEEcCCeEEEEEEcC--CCeEEEEEEEE--EEE--------------------------------------------- Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNT--NDISEAAIASR--TQR--------------------------------------------- 175 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~--~~~~~~~f~~~--~~~--------------------------------------------- 175 (508) +|..|+|..+++ ..++ -.+..+-|+.+ +.. T Consensus 157 ~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (714) T protein:vir:10 157 KVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEY 235 (714) T ss_pred EEEecChhheee-ccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhcccccccchhh Confidence 999999999883 1111 11222222111 000 Q ss_pred -----e----ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c---ce Q lcl|Aclame:pro 176 -----T----ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P---QV 232 (508) Q Consensus 176 -----~----~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~---~~ 232 (508) . .+...+.++++|+|. + .+. ...++...++. .+++.+.+..- ...+. . .. T Consensus 236 ~~~~~~~~~~~~~~~~rV~v~E~w~-k---~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~g--~~~~~~~~~~rv~~~ 308 (714) T protein:vir:10 236 QSWDRQQNEWLQRERRRVLLQVVYY-R---TFE-RLPVIELSNGRVVAFDKNNLMQAVAVASG--RVQVKVGRVSRIREA 308 (714) T ss_pred cccccccccccccCcceEEEEEEEE-e---EEE-EEEeecCCCCCeeeeCccCHHHHHHHHhc--cceecccceeeEEEE Confidence 0 000112345555532 0 111 11112211110 00000000000 00000 0 00 Q ss_pred eec-------C---CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCC Q lcl|Aclame:pro 233 TIS-------G---LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFD 302 (508) Q Consensus 233 ~~~-------g---~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~ 302 (508) .++ + ++...|.|+|+...-....+.|+ +.+.++++.++.+|...|+..+.+ +..++++.+..+..+ T Consensus 309 ~~~g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~gav~~~ 384 (714) T protein:vir:10 309 WFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLS 384 (714) T ss_pred EEecchhhhcCCCCCCCCceeeEEecceeeeccCccc--eehhhhhhHHHHHHHHHHHHHHHH--hCCceeecccccccc Confidence 111 1 11112444433222111122344 578899999999999999999876 333556654443222 Q ss_pred CCC-Ccc-CCcccc-eEeeecCC-CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHH Q lcl|Aclame:pro 303 DEH-KPT-FDTEQN-VYVGVLSD-DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVS 378 (508) Q Consensus 303 ~~~-~~~-~~~~~~-~~~~~~~~-~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~ 378 (508) .+. ... ..++.- .|.+.... ...+..++..++.--..+++..++.....|...+|++...+|-.++ ..++.+|.+ T Consensus 385 d~~~~e~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGvAI~~ 463 (714) T protein:vir:10 385 DNDLMEQLERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGVAISN 463 (714) T ss_pred HHHHHHhccCCCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcc-hhHHHHHHH Confidence 110 000 111111 12222211 1222345655533234577899999999999999999998887643 456777777 Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccccc--c----------------------CcceE Q lcl|Aclame:pro 379 NNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLDSA--S----------------------QPLDI 433 (508) Q Consensus 379 ~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~~~--~----------------------~~~ei 433 (508) +..........+...++.+++.+-+.++.+...+ +.... ....+... . ..++| T Consensus 464 r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~--~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~dv 541 (714) T protein:vir:10 464 LVEQGATTLAEINDNYQFACQQVGRLLLAYLLDD--LKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHI 541 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEEE Confidence 7776666666677777777777777777665332 11111 11111100 0 01223 Q ss_pred EEEeCCCccCCHHHHHHHHHHHHhCC-----CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 434 ECHFDDGVFVNKDKQLEEDAKVLAIG-----ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 434 ~i~f~d~i~~d~~~e~~~~~~~~~~G-----i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +++=..+.+.-+++..+.++++.... .+.....+. .-.+.- +++.+++|.+-.+...+..+... .. --.. T Consensus 542 ~i~~~p~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~le-~~d~p~--~~ei~~~ir~~~~~~~~~~~~~~-e~-q~~q 616 (714) T protein:vir:10 542 ALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-EE-QEVA 616 (714) T ss_pred EEeeccCcHHHHHHHHHHHHHHHhhcCchhhhhHHHHHHH-hcCCcC--HHHHHHHHHHHcCCCCCccccCc-ch-hHHH Confidence 33222222333455555555555321 111122222 222321 33445555544433222111100 00 0000 No 90 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.28 E-value=1.1e-10 Score=75.11 Aligned_cols=486 Identities=11% Similarity=0.062 Sum_probs=223.3 Q ss_pred CChHHHHHHHHHHHHHhh---hhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Cccccccccccch Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAAT---GVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTINM 76 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~n~ 76 (508) |-+-+.+..-.++.--.. .....+..+.. ++.-.++.+....+..+||.|+ .| ...... -....+..++.|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~r~~a~~d~~fy~G~-QW-~~~~~~~l~~~g~p~~~~N~ 76 (772) T protein:vir:10 1 MQITENDRQYLNGLPPAGDTPLTVDEYADINY--EIEDQPAWRAVADKEMDYADGN-QL-DTELLRRQQALGIPPAVEDL 76 (772) T ss_pred CCcchhhHHhhccCCcccccccCHHHHHHHHH--HHhccHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEEcc Confidence 444333332222110000 01111111111 1222445666777888999987 32 211100 0112345677899 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCc-H--------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----Ce Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDN-N--------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----NH 143 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~-~--------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----~~ 143 (508) -+.+|+...++--...+.+.+... + .++..+..+.+.+++......+...++..|-+|+..+++. +. T Consensus 77 i~~~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~d~~~~~ 156 (772) T protein:vir:10 77 IGPALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRESDPFKFP 156 (772) T ss_pred hHHHHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEeccccCCCCCC Confidence 999999999999888888876431 1 1234455556678899999999999999999999988874 45 Q ss_pred eEEEEEcCCeEEEEEEcC-CCeEEE--EEEEEEEE---------------------------------e----------- Q lcl|Aclame:pro 144 IKIAWVRADQFYPLQSNT-NDISEA--AIASRTQR---------------------------------T----------- 176 (508) Q Consensus 144 ~~i~~v~a~~~~Pi~~d~-~~~~~~--~f~~~~~~---------------------------------~----------- 176 (508) ++|.+|++..++. ..+. .++..| +|..++.. . T Consensus 157 i~i~~v~p~~v~~-Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (772) T protein:vir:10 157 YRCRPIRRDEIHW-DMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGTSTGLHNA 235 (772) T ss_pred eEEEeeCccccee-cCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhcccccCcccccccccccccccccc Confidence 7899999999873 1211 123332 22111100 0 Q ss_pred --------------ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccc-------c-------Ccccccccccc---- Q lcl|Aclame:pro 177 --------------ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDI-------V-------GNQVPLSTLPV---- 224 (508) Q Consensus 177 --------------~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~-------l-------G~~v~l~~~~~---- 224 (508) .+...+..+.+|+|... ...+.+++..++.. + +..+.+....- T Consensus 236 ~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~~~~~~~~~rv~ 310 (772) T protein:vir:10 236 WNEARAWTVQEDHWYNPTSKEICLVELWYRR-----WVQVHVLKSPDGRVVEYDPNNLAHNIALASGRISPKKVTVSRVR 310 (772) T ss_pred cchhhccccccccccccCCceEEEEEEeeee-----eeeeeeeccCCCceEeeCcccHHHHHHHhhcccchheeeeeEEE Confidence 00011334455543211 01111222111110 0 00011100000 Q ss_pred ccCCCcceeecC----CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhc Q lcl|Aclame:pro 225 YKELAPQVTISG----LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLR 300 (508) Q Consensus 225 ~~~l~~~~~~~g----~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~ 300 (508) +.-+...+.+.. ++.-.|-|+ |+.-.....+....+.+.++++.++.+|...|+..+.+-.. ++...+..++ T Consensus 311 ~~~~~g~~~L~~~~~p~~~~~fP~v--P~~g~r~~~~g~~~G~vr~~kd~Qr~~N~~~S~~~~~l~~~--~~~~~~gav~ 386 (772) T protein:vir:10 311 RSYWLGPHCLHDGPTPYTHRHFPYV--PFFGFREDATGIPYGYVRGMKYAQDSLNSGVSKLRWGMSVA--RVERTKGAVA 386 (772) T ss_pred EEEEecceeeccCCCCCCCCccceE--EEeeeEeccCCcccchhhhhhhHHHHHHHHHHHHHHHHhcc--cccccCCCcc Confidence 000001111111 111112233 22222222222233688999999999999999999976432 3444443333 Q ss_pred CCCC-CCccCCcccceEeeecCCC--CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 301 FDDE-HKPTFDTEQNVYVGVLSDD--NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 301 ~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) ...+ .......... ...++.+. ..+..++..++.--..+++..++.....|...+|++...+|..++ ..|+.+|. T Consensus 387 ~~d~~~~e~~arp~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~lG~~~n-a~SGvAi~ 464 (772) T protein:vir:10 387 MTDAQFRRQIARPDA-DIVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGFQGRKGT-ATSGIQEQ 464 (772) T ss_pred chhHHHHHhccCCCC-eEEeCCccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHHcCCCcc-hhhHHHHH Confidence 2110 0001100011 11222221 112345555543335678899999999999999999999886543 45777888 Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-ccccccc----------------------------ccc Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDG-KPLFTLD----------------------------SAS 428 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~-~~~~~~~----------------------------~~~ 428 (508) .+..............++.+++.+-+.++.+-..+- ... ....++. ... T Consensus 465 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y--~~er~~RI~~~d~~~~~~~v~in~~~~d~~tg~~~~~NDi~~ 542 (772) T protein:vir:10 465 QQIEQSNQSIGRIMDNFRAGRTLVGELLLAMIVEDI--GQERTEVVIEGDAVTADRVVVLNEPQRDPQTGAAYLSNDLLR 542 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCCceEEeccceecccccccceecccee Confidence 777666666666666677777766666666543221 110 0011110 001 Q ss_pred CcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH------HHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 429 QPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF------LQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 429 ~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~------l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) ..++|.|+=.-+.+.=+++..+.++++. +.+++... +...-.+.- .++.++++++-++..+++....... T Consensus 543 g~yDv~i~~~p~~~t~r~~~~~~m~ql~--~~~~P~~~~~~~~~~le~~D~p~--~~ei~~~ir~~~~~~~peq~~~~~~ 618 (772) T protein:vir:10 543 TRIKVALEDVPSTNSYRGQQLNAMSEAV--KSMPPQYQAAVLPFLVSLMDVPF--KRDVVEAIRAVDQQQTPEQIQQQID 618 (772) T ss_pred eeEEEEeeccccchHHHHHHHHHHHHHH--hccChhHHHHHHHHHHhhcCCCC--hHHHHHHHHHHhccCChHHHHHHHH Confidence 1122222211111122345555555554 33454431 112222221 2233344443322211111000000 Q ss_pred CCCC-------CC Q lcl|Aclame:pro 503 NGGD-------GE 508 (508) Q Consensus 503 ~~~~-------g~ 508 (508) ...- -| T Consensus 619 q~~qq~~~~~~~e 631 (772) T protein:vir:10 619 QAVQDALAKAGND 631 (772) T ss_pred HHHHHHHHHHHHH Confidence 0000 00 No 91 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.26 E-value=2.8e-10 Score=72.95 Aligned_cols=470 Identities=10% Similarity=0.065 Sum_probs=225.8 Q ss_pred CChHHHH-----HHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~ 74 (508) +.|=.+. .++.++.... +.. ++.-.++-+....+..+||.|. .| ...... -....+..++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~R~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~ 72 (714) T protein:vir:99 6 NTMATKNDNGATPRFSQRQLQA------LCS-----DIDSQPKWRDAANKACAYYDGD-QL-PPEVLQVLKDRGQPMTIH 72 (714) T ss_pred ccccCCCCcchhHHHHHHHHHH------HHH-----HHHhhHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEe Confidence 3332221 1122111111 011 1122334456677888999985 22 211100 01123456788 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--- 141 (508) |.-+.+|+...++--...+.+.+.. ++ .++..+..+.+.+++......+...++..|-+|+..+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~ 152 (714) T protein:vir:99 73 NLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPF 152 (714) T ss_pred ccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCC Confidence 9999999999999988888887643 11 1244555566677888899999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEE--EEEEee--------------------------------------- Q lcl|Aclame:pro 142 -NHIKIAWVRADQFYPLQSNT--NDISEAAIAS--RTQRTE--------------------------------------- 177 (508) Q Consensus 142 -~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~--~~~~~~--------------------------------------- 177 (508) +.++|.+|+|..+++ ..++ ..+..+-|+. ++...+ T Consensus 153 ~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (714) T protein:vir:99 153 GPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSA 231 (714) T ss_pred CCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccc Confidence 568999999999884 1111 1233443322 111000 Q ss_pred ---------------cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c- Q lcl|Aclame:pro 178 ---------------SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P- 230 (508) Q Consensus 178 ---------------~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~- 230 (508) ....+.++++|+|. + . .....++...++. .+++.+.+.. ....+. . T Consensus 232 ~~~~~~~~~~~~~~~~~~~~rv~v~E~w~-k---~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~r 304 (714) T protein:vir:99 232 WEEYQSWDRQQNEWLQRERRRVLLQVVYY-R---T-FERLPVIELSNGRVVAFDKNNLMQAVAVAS--GRVQVKVGRVSR 304 (714) T ss_pred hhhhccccccccccccccccEEEEEEEEE-E---E-EEEEEeeccCCCceEEeCccCHHHHHHHhh--cchhhhccccce Confidence 00011223333321 0 0 0011111111110 1111000000 000000 0 Q ss_pred --ceeecC----------CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH Q lcl|Aclame:pro 231 --QVTISG----------LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM 298 (508) Q Consensus 231 --~~~~~g----------~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 298 (508) ...++| .+...|-|+++-.......+.|+ +.+.++++.++.+|...|...+.+ +..++++.+.. T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a 380 (714) T protein:vir:99 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDA 380 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCcee--ehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCc Confidence 011111 11111223222111111112344 478899999999999999998876 33444554333 Q ss_pred hcCCCCC-Cc-cCCcccc-eEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 299 LRFDDEH-KP-TFDTEQN-VYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 299 ~~~~~~~-~~-~~~~~~~-~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) +..+.+. .. .-.++-. .|.+... +......++..++.--..+++..++.....|...+|++...+|-.++ ..++. T Consensus 381 ~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGv 459 (714) T protein:vir:99 381 TQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGV 459 (714) T ss_pred ccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCcc-chhHH Confidence 3221110 00 0111111 1111111 11112235554433345778899999999999999999999887654 35677 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccc------------------------cccC Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLD------------------------SASQ 429 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~------------------------~~~~ 429 (508) +|.++..............++.+++.+-+.++.+...+- .... ...++. .... T Consensus 460 Ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~--~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~ 537 (714) T protein:vir:99 460 AISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDL--KKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRL 537 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEeccCCCcCcceEEeeccccCcceecccceee Confidence 777777666666666666677777777776666543221 1000 111110 0112 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH-------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ-------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e-------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) .++|.|+=..+-+.-+++..+.++++... +++. ..+. .-++.. +.+.+++|++-++...+..+... T Consensus 538 ~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~-~~d~p~--~~el~~~ir~~~~~~~~~~~~~~-- 610 (714) T protein:vir:99 538 NTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-- 610 (714) T ss_pred eEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHH-hcCCCC--HHHHHHHHHHHcCCCCCccccch-- Confidence 23444444444444456666666666532 3332 3333 223322 44556666654432221111110 Q ss_pred CCCCCC Q lcl|Aclame:pro 503 NGGDGE 508 (508) Q Consensus 503 ~~~~g~ 508 (508) .-. T Consensus 611 ---e~q 613 (714) T protein:vir:99 611 ---EEQ 613 (714) T ss_pred ---hhH Confidence 001 No 92 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.26 E-value=2.8e-10 Score=72.95 Aligned_cols=470 Identities=10% Similarity=0.065 Sum_probs=225.8 Q ss_pred CChHHHH-----HHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~ 74 (508) +.|=.+. .++.++.... +.. ++.-.++-+....+..+||.|. .| ...... -....+..++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~R~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~ 72 (714) T protein:vir:27 6 NTMATKNDNGATPRFSQRQLQA------LCS-----DIDSQPKWRDAANKACAYYDGD-QL-PPEVLQVLKDRGQPMTIH 72 (714) T ss_pred ccccCCCCcchhHHHHHHHHHH------HHH-----HHHhhHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEe Confidence 3332221 1122111111 011 1122334456677888999985 22 211100 01123456788 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--- 141 (508) |.-+.+|+...++--...+.+.+.. ++ .++..+..+.+.+++......+...++..|-+|+..+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~ 152 (714) T protein:vir:27 73 NLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPF 152 (714) T ss_pred ccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCC Confidence 9999999999999988888887643 11 1244555566677888899999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEE--EEEEee--------------------------------------- Q lcl|Aclame:pro 142 -NHIKIAWVRADQFYPLQSNT--NDISEAAIAS--RTQRTE--------------------------------------- 177 (508) Q Consensus 142 -~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~--~~~~~~--------------------------------------- 177 (508) +.++|.+|+|..+++ ..++ ..+..+-|+. ++...+ T Consensus 153 ~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (714) T protein:vir:27 153 GPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSA 231 (714) T ss_pred CCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccc Confidence 568999999999884 1111 1233443322 111000 Q ss_pred ---------------cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c- Q lcl|Aclame:pro 178 ---------------SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P- 230 (508) Q Consensus 178 ---------------~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~- 230 (508) ....+.++++|+|. + . .....++...++. .+++.+.+.. ....+. . T Consensus 232 ~~~~~~~~~~~~~~~~~~~~rv~v~E~w~-k---~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~r 304 (714) T protein:vir:27 232 WEEYQSWDRQQNEWLQRERRRVLLQVVYY-R---T-FERLPVIELSNGRVVAFDKNNLMQAVAVAS--GRVQVKVGRVSR 304 (714) T ss_pred hhhhccccccccccccccccEEEEEEEEE-E---E-EEEEEeeccCCCceEEeCccCHHHHHHHhh--cchhhhccccce Confidence 00011223333321 0 0 0011111111110 1111000000 000000 0 Q ss_pred --ceeecC----------CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH Q lcl|Aclame:pro 231 --QVTISG----------LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM 298 (508) Q Consensus 231 --~~~~~g----------~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 298 (508) ...++| .+...|-|+++-.......+.|+ +.+.++++.++.+|...|...+.+ +..++++.+.. T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a 380 (714) T protein:vir:27 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDA 380 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCcee--ehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCc Confidence 011111 11111223222111111112344 478899999999999999998876 33444554333 Q ss_pred hcCCCCC-Cc-cCCcccc-eEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 299 LRFDDEH-KP-TFDTEQN-VYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 299 ~~~~~~~-~~-~~~~~~~-~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) +..+.+. .. .-.++-. .|.+... +......++..++.--..+++..++.....|...+|++...+|-.++ ..++. T Consensus 381 ~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGv 459 (714) T protein:vir:27 381 TQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGV 459 (714) T ss_pred ccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCcc-chhHH Confidence 3221110 00 0111111 1111111 11112235554433345778899999999999999999999887654 35677 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccc------------------------cccC Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLD------------------------SASQ 429 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~------------------------~~~~ 429 (508) +|.++..............++.+++.+-+.++.+...+- .... ...++. .... T Consensus 460 Ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~--~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~ 537 (714) T protein:vir:27 460 AISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDL--KKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRL 537 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEeccCCCcCcceEEeeccccCcceecccceee Confidence 777777666666666666677777777776666543221 1000 111110 0112 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH-------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ-------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e-------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) .++|.|+=..+-+.-+++..+.++++... +++. ..+. .-++.. +.+.+++|++-++...+..+... T Consensus 538 ~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~-~~d~p~--~~el~~~ir~~~~~~~~~~~~~~-- 610 (714) T protein:vir:27 538 NTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-- 610 (714) T ss_pred eEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHH-hcCCCC--HHHHHHHHHHHcCCCCCccccch-- Confidence 23444444444444456666666666532 3332 3333 223322 44556666654432221111110 Q ss_pred CCCCCC Q lcl|Aclame:pro 503 NGGDGE 508 (508) Q Consensus 503 ~~~~g~ 508 (508) .-. T Consensus 611 ---e~q 613 (714) T protein:vir:27 611 ---EEQ 613 (714) T ss_pred ---hhH Confidence 001 No 93 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.26 E-value=2.8e-10 Score=72.95 Aligned_cols=470 Identities=10% Similarity=0.065 Sum_probs=225.8 Q ss_pred CChHHHH-----HHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~ 74 (508) +.|=.+. .++.++.... +.. ++.-.++-+....+..+||.|. .| ...... -....+..++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~R~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~ 72 (714) T protein:vir:32 6 NTMATKNDNGATPRFSQRQLQA------LCS-----DIDSQPKWRDAANKACAYYDGD-QL-PPEVLQVLKDRGQPMTIH 72 (714) T ss_pred ccccCCCCcchhHHHHHHHHHH------HHH-----HHHhhHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEe Confidence 3332221 1122111111 011 1122334456677888999985 22 211100 01123456788 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--- 141 (508) |.-+.+|+...++--...+.+.+.. ++ .++..+..+.+.+++......+...++..|-+|+..+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~ 152 (714) T protein:vir:32 73 NLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPF 152 (714) T ss_pred ccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCC Confidence 9999999999999988888887643 11 1244555566677888899999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEE--EEEEee--------------------------------------- Q lcl|Aclame:pro 142 -NHIKIAWVRADQFYPLQSNT--NDISEAAIAS--RTQRTE--------------------------------------- 177 (508) Q Consensus 142 -~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~--~~~~~~--------------------------------------- 177 (508) +.++|.+|+|..+++ ..++ ..+..+-|+. ++...+ T Consensus 153 ~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (714) T protein:vir:32 153 GPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSA 231 (714) T ss_pred CCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccc Confidence 568999999999884 1111 1233443322 111000 Q ss_pred ---------------cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c- Q lcl|Aclame:pro 178 ---------------SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P- 230 (508) Q Consensus 178 ---------------~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~- 230 (508) ....+.++++|+|. + . .....++...++. .+++.+.+.. ....+. . T Consensus 232 ~~~~~~~~~~~~~~~~~~~~rv~v~E~w~-k---~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~r 304 (714) T protein:vir:32 232 WEEYQSWDRQQNEWLQRERRRVLLQVVYY-R---T-FERLPVIELSNGRVVAFDKNNLMQAVAVAS--GRVQVKVGRVSR 304 (714) T ss_pred hhhhccccccccccccccccEEEEEEEEE-E---E-EEEEEeeccCCCceEEeCccCHHHHHHHhh--cchhhhccccce Confidence 00011223333321 0 0 0011111111110 1111000000 000000 0 Q ss_pred --ceeecC----------CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH Q lcl|Aclame:pro 231 --QVTISG----------LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM 298 (508) Q Consensus 231 --~~~~~g----------~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 298 (508) ...++| .+...|-|+++-.......+.|+ +.+.++++.++.+|...|...+.+ +..++++.+.. T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a 380 (714) T protein:vir:32 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDA 380 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCcee--ehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCc Confidence 011111 11111223222111111112344 478899999999999999998876 33444554333 Q ss_pred hcCCCCC-Cc-cCCcccc-eEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 299 LRFDDEH-KP-TFDTEQN-VYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 299 ~~~~~~~-~~-~~~~~~~-~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) +..+.+. .. .-.++-. .|.+... +......++..++.--..+++..++.....|...+|++...+|-.++ ..++. T Consensus 381 ~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGv 459 (714) T protein:vir:32 381 TQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGV 459 (714) T ss_pred ccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCcc-chhHH Confidence 3221110 00 0111111 1111111 11112235554433345778899999999999999999999887654 35677 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccc------------------------cccC Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLD------------------------SASQ 429 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~------------------------~~~~ 429 (508) +|.++..............++.+++.+-+.++.+...+- .... ...++. .... T Consensus 460 Ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~--~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~ 537 (714) T protein:vir:32 460 AISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDL--KKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRL 537 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEeccCCCcCcceEEeeccccCcceecccceee Confidence 777777666666666666677777777776666543221 1000 111110 0112 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH-------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ-------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e-------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) .++|.|+=..+-+.-+++..+.++++... +++. ..+. .-++.. +.+.+++|++-++...+..+... T Consensus 538 ~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~-~~d~p~--~~el~~~ir~~~~~~~~~~~~~~-- 610 (714) T protein:vir:32 538 NTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-- 610 (714) T ss_pred eEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHH-hcCCCC--HHHHHHHHHHHcCCCCCccccch-- Confidence 23444444444444456666666666532 3332 3333 223322 44556666654432221111110 Q ss_pred CCCCCC Q lcl|Aclame:pro 503 NGGDGE 508 (508) Q Consensus 503 ~~~~g~ 508 (508) .-. T Consensus 611 ---e~q 613 (714) T protein:vir:32 611 ---EEQ 613 (714) T ss_pred ---hhH Confidence 001 No 94 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.26 E-value=2.8e-10 Score=72.95 Aligned_cols=470 Identities=10% Similarity=0.065 Sum_probs=225.8 Q ss_pred CChHHHH-----HHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~ 74 (508) +.|=.+. .++.++.... +.. ++.-.++-+....+..+||.|. .| ...... -....+..++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~R~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~ 72 (714) T protein:vir:10 6 NTMATKNDNGATPRFSQRQLQA------LCS-----DIDSQPKWRDAANKACAYYDGD-QL-PPEVLQVLKDRGQPMTIH 72 (714) T ss_pred ccccCCCCcchhHHHHHHHHHH------HHH-----HHHhhHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEe Confidence 3332221 1122111111 011 1122334456677888999985 22 211100 01123456788 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--- 141 (508) |.-+.+|+...++--...+.+.+.. ++ .++..+..+.+.+++......+...++..|-+|+..+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~ 152 (714) T protein:vir:10 73 NLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPF 152 (714) T ss_pred ccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCC Confidence 9999999999999988888887643 11 1244555566677888899999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEE--EEEEee--------------------------------------- Q lcl|Aclame:pro 142 -NHIKIAWVRADQFYPLQSNT--NDISEAAIAS--RTQRTE--------------------------------------- 177 (508) Q Consensus 142 -~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~--~~~~~~--------------------------------------- 177 (508) +.++|.+|+|..+++ ..++ ..+..+-|+. ++...+ T Consensus 153 ~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (714) T protein:vir:10 153 GPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSA 231 (714) T ss_pred CCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccc Confidence 568999999999884 1111 1233443322 111000 Q ss_pred ---------------cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c- Q lcl|Aclame:pro 178 ---------------SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P- 230 (508) Q Consensus 178 ---------------~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~- 230 (508) ....+.++++|+|. + . .....++...++. .+++.+.+.. ....+. . T Consensus 232 ~~~~~~~~~~~~~~~~~~~~rv~v~E~w~-k---~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~r 304 (714) T protein:vir:10 232 WEEYQSWDRQQNEWLQRERRRVLLQVVYY-R---T-FERLPVIELSNGRVVAFDKNNLMQAVAVAS--GRVQVKVGRVSR 304 (714) T ss_pred hhhhccccccccccccccccEEEEEEEEE-E---E-EEEEEeeccCCCceEEeCccCHHHHHHHhh--cchhhhccccce Confidence 00011223333321 0 0 0011111111110 1111000000 000000 0 Q ss_pred --ceeecC----------CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH Q lcl|Aclame:pro 231 --QVTISG----------LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM 298 (508) Q Consensus 231 --~~~~~g----------~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 298 (508) ...++| .+...|-|+++-.......+.|+ +.+.++++.++.+|...|...+.+ +..++++.+.. T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a 380 (714) T protein:vir:10 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDA 380 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCcee--ehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCc Confidence 011111 11111223222111111112344 478899999999999999998876 33444554333 Q ss_pred hcCCCCC-Cc-cCCcccc-eEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 299 LRFDDEH-KP-TFDTEQN-VYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 299 ~~~~~~~-~~-~~~~~~~-~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) +..+.+. .. .-.++-. .|.+... +......++..++.--..+++..++.....|...+|++...+|-.++ ..++. T Consensus 381 ~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGv 459 (714) T protein:vir:10 381 TQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGV 459 (714) T ss_pred ccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCcc-chhHH Confidence 3221110 00 0111111 1111111 11112235554433345778899999999999999999999887654 35677 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccc------------------------cccC Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLD------------------------SASQ 429 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~------------------------~~~~ 429 (508) +|.++..............++.+++.+-+.++.+...+- .... ...++. .... T Consensus 460 Ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~--~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~ 537 (714) T protein:vir:10 460 AISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDL--KKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRL 537 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEeccCCCcCcceEEeeccccCcceecccceee Confidence 777777666666666666677777777776666543221 1000 111110 0112 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH-------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ-------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e-------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) .++|.|+=..+-+.-+++..+.++++... +++. ..+. .-++.. +.+.+++|++-++...+..+... T Consensus 538 ~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~-~~d~p~--~~el~~~ir~~~~~~~~~~~~~~-- 610 (714) T protein:vir:10 538 NTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-- 610 (714) T ss_pred eEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHH-hcCCCC--HHHHHHHHHHHcCCCCCccccch-- Confidence 23444444444444456666666666532 3332 3333 223322 44556666654432221111110 Q ss_pred CCCCCC Q lcl|Aclame:pro 503 NGGDGE 508 (508) Q Consensus 503 ~~~~g~ 508 (508) .-. T Consensus 611 ---e~q 613 (714) T protein:vir:10 611 ---EEQ 613 (714) T ss_pred ---hhH Confidence 001 No 95 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.26 E-value=2.8e-10 Score=72.95 Aligned_cols=470 Identities=10% Similarity=0.065 Sum_probs=225.8 Q ss_pred CChHHHH-----HHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC-Ccccccccccc Q lcl|Aclame:pro 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD-GIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~~ 74 (508) +.|=.+. .++.++.... +.. ++.-.++-+....+..+||.|. .| ...... -....+..++. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~R~~a~~d~~fy~G~-Qw-~~~~~~~l~~~g~p~~~~ 72 (714) T protein:vir:81 6 NTMATKNDNGATPRFSQRQLQA------LCS-----DIDSQPKWRDAANKACAYYDGD-QL-PPEVLQVLKDRGQPMTIH 72 (714) T ss_pred ccccCCCCcchhHHHHHHHHHH------HHH-----HHHhhHHHHHHHHHHHHhhcCC-CC-CHHHHHHHHhcCCCcEEe Confidence 3332221 1122111111 011 1122334456677888999985 22 211100 01123456788 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--- Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--- 141 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--- 141 (508) |.-+.+|+...++--...+.+.+.. ++ .++..+..+.+.+++......+...++..|-+|+..+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~ 152 (714) T protein:vir:81 73 NLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPF 152 (714) T ss_pred ccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCC Confidence 9999999999999988888887643 11 1244555566677888899999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcC--CCeEEEEEEE--EEEEee--------------------------------------- Q lcl|Aclame:pro 142 -NHIKIAWVRADQFYPLQSNT--NDISEAAIAS--RTQRTE--------------------------------------- 177 (508) Q Consensus 142 -~~~~i~~v~a~~~~Pi~~d~--~~~~~~~f~~--~~~~~~--------------------------------------- 177 (508) +.++|.+|+|..+++ ..++ ..+..+-|+. ++...+ T Consensus 153 ~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (714) T protein:vir:81 153 GPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSA 231 (714) T ss_pred CCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccc Confidence 568999999999884 1111 1233443322 111000 Q ss_pred ---------------cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-------ccCccccccccccccCCC----c- Q lcl|Aclame:pro 178 ---------------SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-------IVGNQVPLSTLPVYKELA----P- 230 (508) Q Consensus 178 ---------------~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-------~lG~~v~l~~~~~~~~l~----~- 230 (508) ....+.++++|+|. + . .....++...++. .+++.+.+.. ....+. . T Consensus 232 ~~~~~~~~~~~~~~~~~~~~rv~v~E~w~-k---~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~r 304 (714) T protein:vir:81 232 WEEYQSWDRQQNEWLQRERRRVLLQVVYY-R---T-FERLPVIELSNGRVVAFDKNNLMQAVAVAS--GRVQVKVGRVSR 304 (714) T ss_pred hhhhccccccccccccccccEEEEEEEEE-E---E-EEEEEeeccCCCceEEeCccCHHHHHHHhh--cchhhhccccce Confidence 00011223333321 0 0 0011111111110 1111000000 000000 0 Q ss_pred --ceeecC----------CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHH Q lcl|Aclame:pro 231 --QVTISG----------LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGM 298 (508) Q Consensus 231 --~~~~~g----------~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 298 (508) ...++| .+...|-|+++-.......+.|+ +.+.++++.++.+|...|...+.+ +..++++.+.. T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a 380 (714) T protein:vir:81 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDA 380 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCcee--ehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCc Confidence 011111 11111223222111111112344 478899999999999999998876 33444554333 Q ss_pred hcCCCCC-Cc-cCCcccc-eEeeecC-CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 299 LRFDDEH-KP-TFDTEQN-VYVGVLS-DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 299 ~~~~~~~-~~-~~~~~~~-~~~~~~~-~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) +..+.+. .. .-.++-. .|.+... +......++..++.--..+++..++.....|...+|++...+|-.++ ..++. T Consensus 381 ~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n-a~SGv 459 (714) T protein:vir:81 381 TQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG-ATSGV 459 (714) T ss_pred ccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCcc-chhHH Confidence 3221110 00 0111111 1111111 11112235554433345778899999999999999999999887654 35677 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccccc------------------------cccC Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGK-PLFTLD------------------------SASQ 429 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~-~~~~~~------------------------~~~~ 429 (508) +|.++..............++.+++.+-+.++.+...+- .... ...++. .... T Consensus 460 Ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~--~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~ 537 (714) T protein:vir:81 460 AISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDL--KKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRL 537 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcEEEEeccCCCcCcceEEeeccccCcceecccceee Confidence 777777666666666666677777777776666543221 1000 111110 0112 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH-------HHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ-------TFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e-------t~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~ 502 (508) .++|.|+=..+-+.-+++..+.++++... +++. ..+. .-++.. +.+.+++|++-++...+..+... T Consensus 538 ~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~-~~d~p~--~~el~~~ir~~~~~~~~~~~~~~-- 610 (714) T protein:vir:81 538 NTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVN-LLDVPQ--KQEFVERIRAALGTPKSPDEMTP-- 610 (714) T ss_pred eEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHH-hcCCCC--HHHHHHHHHHHcCCCCCccccch-- Confidence 23444444444444456666666666532 3332 3333 223322 44556666654432221111110 Q ss_pred CCCCCC Q lcl|Aclame:pro 503 NGGDGE 508 (508) Q Consensus 503 ~~~~g~ 508 (508) .-. T Consensus 611 ---e~q 613 (714) T protein:vir:81 611 ---EEQ 613 (714) T ss_pred ---hhH Confidence 001 No 96 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.24 E-value=1.9e-11 Score=79.32 Aligned_cols=435 Identities=11% Similarity=0.063 Sum_probs=195.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhh-ccccccCCHHHHHHHHHHHHHhc-C---------CCccccCccCCCccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKIT-DDPRISIDPDEYVRIQTDLDYYS-D---------KLQYIHYQASDGIKKKR 69 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~~~Y~-g---------~~~~~~~~~~~~~~~~~ 69 (508) |.=.-++..|..+....- ....+...- -...+++++-..+.......-.. | ..+|+......+...-. T Consensus 37 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~a 115 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAP-VIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQACA 115 (765) T ss_pred chhHHHHhhcccccccCC-CCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHHHH Confidence 443334444443222111 001111000 01112222210000000000000 0 00011111111111111 Q ss_pred cccccchHHHHHHHHHHhhhcCcceEeeCCcH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC--Cee Q lcl|Aclame:pro 70 LKNTINMAKTAARRIASVVFNEKAEIHVKDNN---EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG--NHI 144 (508) Q Consensus 70 ~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~---~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~ 144 (508) .+.+..+++.+|+..|.-++.+..+|++.+++ ...+.|++.++.-+++..+.+++..+-.+|++++.+-+++ +.- T Consensus 116 lY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~ 195 (765) T protein:vir:96 116 IISQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDY 195 (765) T ss_pred HHHhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcch Confidence 23456899999999999999999999875432 2234677777777789999999999999999987655542 110 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEe---------ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRT---------ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~---------~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) .-.-+.++.+-| +.+..+..+.++... +.....+| .-+. |.|. |. T Consensus 196 l~~PL~~~~I~k-----g~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg-~P~~--------y~i~------------g~ 249 (765) T protein:vir:96 196 YEKPFNPDGIAP-----GSYKGISQIDPYWAMPQLTAESTADPSAEHFY-EPDF--------WIIS------------GK 249 (765) T ss_pred hhcccccccccc-----ceeeEEEEechhhcccccchhccccccccccC-ccee--------eeec------------Cc Confidence 001111111111 112222222111100 00000010 0011 1110 11 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCC-CcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIE-SPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV 294 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~-splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v 294 (508) +|.-+.+ +.+.|. +++.-.... .-.|+|++..+.+.|..++.+......-+.....+++- T Consensus 250 ~IH~SRl---------i~~~g~----------~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k 310 (765) T protein:vir:96 250 KYHRSHL---------VVVRGP----------QPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIH 310 (765) T ss_pred eeccceE---------EEecCC----------CchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceee Confidence 1100000 111111 111111111 22599999999999999998776665555444444443 Q ss_pred chHHhcC--CCCCCc----cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-ccccc Q lcl|Aclame:pro 295 QPGMLRF--DDEHKP----TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSN 367 (508) Q Consensus 295 ~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~ 367 (508) .. ++.. +.+... .+...+..+..+..+.+ ..+++++.+ +......++..+++|...++++..- ||... T Consensus 311 ~~-~~~~l~~~~~l~~r~~~~~~~r~n~g~~~id~e--e~~e~~s~~--lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp 385 (765) T protein:vir:96 311 VD-VEKAIANEDAFNARLAFWIANRDNHGVKVIGID--ETMEQFDTN--LSDFDSVIMNQYQLVAAIAKTPATKLLGTSP 385 (765) T ss_pred ec-hHhhhccHHHHHHHHHHHHHhcCCceeEEecCC--cceeEEecc--cCCHHHHHHHHHHHHHhhhCCCeeeeccCCc Confidence 22 2211 111110 11111111111112222 237766654 4567778888889999999987644 44443 Q ss_pred ccc-chHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCH Q lcl|Aclame:pro 368 DGV-KTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNK 445 (508) Q Consensus 368 ~~~-~TAtei~~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~ 445 (508) +|. +|+.+=.. ..|..+..+| ..++..|+.|+..+++.. .. +.+++|.|+.-...+. T Consensus 386 ~GlnATGe~D~~---nYyD~I~s~Qe~~l~p~le~L~~li~~s~---------------~i---~~d~~i~FnpL~~~se 444 (765) T protein:vir:96 386 KGFNATGEHETI---SYHEELESIQEHIFDPLLERHYLLLAKSE---------------SI---DVQLEIVWNPVDSTTS 444 (765) T ss_pred ccccCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CC---CCcceEEeCCCCCCCH Confidence 454 45543223 3455666655 567888888888766431 11 2368999999877776 Q ss_pred HHHHH-------HHHHHHhCCCCCHHHHHHhc--------CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCC---- Q lcl|Aclame:pro 446 DKQLE-------EDAKVLAIGALSKQTFLQRN--------YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGD---- 506 (508) Q Consensus 446 ~~e~~-------~~~~~~~~Gi~s~et~l~~~--------~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~---- 506 (508) .+.++ .+.+++..|+++..+++..+ ..+++++.+.+- -+..+..+....++..++..... T Consensus 445 kEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~-~~~pe~~~~~~~~~~~~~~~~~e~~~~ 523 (765) T protein:vir:96 445 QQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEP-GMSPENLAELEKAGAQSAKAKGEAERA 523 (765) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCcccccccc-CCCccccccccCCCcccccccCccccc Confidence 66554 36677788999988877653 123343322110 00000000000000000000010 Q ss_pred ----------CC Q lcl|Aclame:pro 507 ----------GE 508 (508) Q Consensus 507 ----------g~ 508 (508) ++ T Consensus 524 ~a~p~~~eg~~~ 535 (765) T protein:vir:96 524 EAQAGAVEGAGD 535 (765) T ss_pred cCCCCccCCCCc Confidence 01 No 97 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.23 E-value=9.6e-11 Score=75.50 Aligned_cols=433 Identities=12% Similarity=0.052 Sum_probs=194.0 Q ss_pred CChHHH---HHHHHHHHHHhhhhhhhhHHhh-------c--cccccCCHH--HHHHHHHHHHHhcCCC------ccccCc Q lcl|Aclame:pro 1 MGLIQR---IKDLFWKGAAATGVTGSLSKIT-------D--DPRISIDPD--EYVRIQTDLDYYSDKL------QYIHYQ 60 (508) Q Consensus 1 m~~~~~---ik~~~~~~~~~~~~~~~~~~~~-------~--~~~i~~~~~--~~~~i~~~~~~Y~g~~------~~~~~~ 60 (508) |++|-. .|...... ..-.....+.+-. + +.-++++.. .+..+. -|.|.. .++... T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 99 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQ-LVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFS----AYANPNLSEGLVLWYAQQ 99 (537) T ss_pred cCCCcccchhhHHHHHH-hhhhccCCCCCccCcccccccccccchhccccccchhhhh----hhccccccchhhhhcccc Confidence 666532 22211100 0000000110000 0 011121110 000000 011110 011000 Q ss_pred cCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEE Q lcl|Aclame:pro 61 ASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMR 136 (508) Q Consensus 61 ~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~ 136 (508) ...+...-..+....+++.+|+..|.-++.+...|++.+++ ...+.|+..++.-+++..+.+++..+-.+|++++. T Consensus 100 ~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~ 179 (537) T protein:vir:10 100 AFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIAL 179 (537) T ss_pred CCccHHHHHHHHhCchhhhhhhhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEE Confidence 11111111112345899999999999999999999986532 22346777777778999999999999999998887 Q ss_pred EEEeC--CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEE---------eecCCcEEEEEEEEEEEeCCceEEEEEEEE Q lcl|Aclame:pro 137 PYIDG--NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQR---------TESNQTKYYTLLEFHQWQDNGSYQITNELY 205 (508) Q Consensus 137 ~~~d~--~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~---------~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly 205 (508) +.++. +...-+-+.++.+-| +.+..+..+.++.. .+.... .|-.-++| +|. T Consensus 180 i~v~~~D~~~~~~Pl~~~~i~k-----g~~k~l~vidp~~~~~~~~~~~~~dp~sp-~fg~P~~y--------~v~---- 241 (537) T protein:vir:10 180 FKVDSPDPYYYEKPFNIDGVMP-----GAYKGIVQIDPYWCAPLLDAQASSNPVSM-HFYEPTYW--------LIN---- 241 (537) T ss_pred EeecCcCCcccccccccccccc-----cceeEEEEechhhcccccchhhhccCCcc-ccCCceee--------eec---- Confidence 76642 211111111111111 11111111111100 000000 11111111 111 Q ss_pred ecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccC-CCcCCcchhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 KSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINI-ESPLGLGVVDNAKHVLDDINDTHDQFIWE 284 (508) Q Consensus 206 ~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~-~splG~S~~~~~~~lid~lD~~~s~~~~e 284 (508) |..|.-+.+ +.+.|.+ +++-... ..-.|+|++..+.+.|..++.+......- T Consensus 242 --------g~~iH~SRl---------i~f~g~~----------~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l 294 (537) T protein:vir:10 242 --------GKKYHRSHL---------AIYINDE----------VVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPML 294 (537) T ss_pred --------CeEecceeE---------EEecCCC----------CchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 111100000 1111111 1111000 11259999999999999999887777666 Q ss_pred HHhccceeeechHHhc-CCCCCCc----cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 285 IRLGQKHIAVQPGMLR-FDDEHKP----TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLS 359 (508) Q Consensus 285 ~~~~~~~i~v~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s 359 (508) +.....+++-...+-. .++++.. .+...+..+..+..+. ++..++.++.+ +......++...+.|...+|++ T Consensus 295 ~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~g~~~id~-e~e~~e~~~~~--lsgl~~~l~~~~~~iAa~~~IP 371 (537) T protein:vir:10 295 AMTKRQTVLKVDAAQVLANKQQFDETMSWWTATRDNYQVRVVDK-DNEDVVQIDTT--LNDLDKVIMNQYQLVCAIARTP 371 (537) T ss_pred HHhcCCceeeechHHhhcCHHHHHHHHHHHHhhcCCcceeEecC-CCceeEEEecc--CCCHHHHHHHHHHHHHhhhCCC Confidence 5544445542221100 1111100 0111111111112221 11235555533 4556677788888888888988 Q ss_pred chh-cccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 360 TGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 360 ~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) ... ||...+|. .|+++=... .+..++.+|..++..|+.++..|++.. +. .+.+++|.| T Consensus 372 ~t~L~G~sp~GlnatGe~D~~~---yyd~I~~~Qe~l~p~l~~l~~ll~~~~--------------~~---~~~~~~i~f 431 (537) T protein:vir:10 372 APKMLGTVPTGFNSTGDYEEAS---YHEECESTQDDMRPLIDRHHQLVCRSH--------------LR---KRIRVKVEF 431 (537) T ss_pred ceeeccCCccccccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CC---CCcceEEEe Confidence 774 55444454 445543333 456666666668888888877766432 01 123689999 Q ss_pred CCCccCCHHHHHH-------HHHHHHhCCCCCHHHHHHhc--------CCC----CHHHHHHHHHHHHHhccC--CCCCC Q lcl|Aclame:pro 438 DDGVFVNKDKQLE-------EDAKVLAIGALSKQTFLQRN--------YGM----TDEQAAEELAKIQSEAPT--DTFEG 496 (508) Q Consensus 438 ~d~i~~d~~~e~~-------~~~~~~~~Gi~s~et~l~~~--------~~~----~deea~~e~~ri~~E~~~--~~~~~ 496 (508) +.-...+..+.++ .+.+++..|+|+..+++..+ .++ ++++++. ..+..|..+ ..+.. T Consensus 432 ~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~--~~~~~~~~~~~~~~~~ 509 (537) T protein:vir:10 432 PPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAED--IDVDDEGKPVRIIEDQ 509 (537) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhc--ccCCccCCcCCCCCCC Confidence 9877777666554 47778889999998876542 122 2222211 111111111 11111 Q ss_pred cccccC--CCCCCC Q lcl|Aclame:pro 497 GRSAIL--NGGDGE 508 (508) Q Consensus 497 ~~~~~~--~~~~g~ 508 (508) +..+.. ....|+ T Consensus 510 ~~~~~~~~~~~~~~ 523 (537) T protein:vir:10 510 PAPSEMFGATSSGE 523 (537) T ss_pred CCccccCCCCcccc Confidence 111111 111222 No 98 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.22 E-value=3.8e-11 Score=77.70 Aligned_cols=407 Identities=14% Similarity=0.110 Sum_probs=183.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhc-cccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITD-DPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) ||+|=+=| ...+-..-++..++. +... ..+.+..........-...+.+..+++. T Consensus 1 ~~~~m~~~------~~~~~~~D~~~~~~~~~~g~------------------~~~~~~~~~~~~~~~l~~~Y~~~~l~~~ 56 (435) T protein:vir:79 1 MGVFMSDK------VKAITKEDGYNEIFGSKDGT------------------FRPNAFYMQRAAFKALSQFYEEDGMARR 56 (435) T ss_pred CCcccccc------cccchhhcchhhhhcccccc------------------cccCcccCCcCCHHHHHHHHhcCchhhh Confidence 88753211 111101112211110 0000 0000000000000011112234589999 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQS 159 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~ 159 (508) +|+..|.-++.+...|+..+++ +.++..++.-+++..+.+++..+-.+|++++.+-..+++- .+ -|+.. T Consensus 57 ~Vd~~aed~~r~g~~i~g~~~~---~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~------~~--~Pl~~ 125 (435) T protein:vir:79 57 IVDVIPEEMVTPGFKVDGVKNE---KSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKM------LK--SPVKP 125 (435) T ss_pred hhccchHHhhcCCceecCCChH---HHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCC------cc--ccccc Confidence 9999999999998888753322 3466666666788999999999999999887776643321 01 13311 Q ss_pred cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCcc-ccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 160 NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPD-IVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 160 d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~-~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) .+.+..+..+.++... .+ ++.+ ...++.+-..+.|.-.+.+ .-+..|.-+.+ +.+.|.+ T Consensus 126 -~g~i~~i~v~d~~~i~------~~---~~~~-dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRl---------i~~~g~~ 185 (435) T protein:vir:79 126 -GAQLEDIRVYDRYQIT------IH---ERET-NARSVRYGEPKLYKISPGGDIPEFFVHYSRI---------CIIDGER 185 (435) T ss_pred -CCceeeEEeechhhcc------ch---hhcc-CCcccccCcceEEEEecCCCCCceEEcceeE---------EEecCCc Confidence 2333332222221100 00 0000 0000000000111100000 00111110110 1111211 Q ss_pred cceEEEecCCccccccCCCcCCcchh-hhHHHHHHHHHHHHHHHHHHHHhccceeeech---HHhcCCCCCCcc------ Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVV-DNAKHVLDDINDTHDQFIWEIRLGQKHIAVQP---GMLRFDDEHKPT------ 308 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~---~~~~~~~~~~~~------ 308 (508) +|-. -....+.+|.|++ ..+.+.+..++.+......-+...+.+++-.. .++..+...... T Consensus 186 --------~p~~-~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~ 256 (435) T protein:vir:79 186 --------VSNE-KRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRYAARLRLAQ 256 (435) T ss_pred --------chhh-hccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchHHHHHHHHH Confidence 1111 0112456799987 58889999999888777666644444444322 222222211110 Q ss_pred CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-cccccccc-chHHHHHHHHHHHHhh Q lcl|Aclame:pro 309 FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQT 386 (508) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~~~~~l~~~ 386 (508) +.........+..++. ...+++++.++ ......++...+.|...+|++... ||...+|. .|+.+-...+ |.. T Consensus 257 ~~~~~~~~~~~~i~~~-~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~y---yd~ 330 (435) T protein:vir:79 257 VDDESGVGKAIGIDAT-DEEYEVLNSDV--SGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETF---YKL 330 (435) T ss_pred HHHhcCCCCceeEecC-CcceEEEeccc--CCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHH---HHH Confidence 1111111222222221 12377666543 566778888889999999998865 56555554 4555544444 444 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH-------HHHHHhC Q lcl|Aclame:pro 387 RSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE-------DAKVLAI 458 (508) Q Consensus 387 ~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~-------~~~~~~~ 458 (508) ++.+| ..++..|+.|+..+++ ..+++|.|+.-...+..+.++. +.+++.+ T Consensus 331 i~~~Qe~~l~p~l~~l~~li~~----------------------s~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~ 388 (435) T protein:vir:79 331 IDRKRVEDYKPILEFLLPFMIS----------------------ETEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAE 388 (435) T ss_pred HHHHHHHHHHHHHHHHHHHhhc----------------------CCCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc Confidence 55444 5577777777665442 0257899999888887555443 3444556 Q ss_pred CCCCHHHHHHhc------CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 459 GALSKQTFLQRN------YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 459 Gi~s~et~l~~~------~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+++.++++... .+..++. ..++ +++.+. ++ ..+-.+++.+ T Consensus 389 g~i~~~e~r~~L~~~~~~~~~~~~~----~~~~--~~~~d~--~~-~~~~e~g~~~ 435 (435) T protein:vir:79 389 QAINLKETRDTLRSICPDLKIMDND----NIEL--PEPEDL--DP-EPGQEGGLNK 435 (435) T ss_pred CCCCHHHHHHHHHHhccccCCCCcc----cccC--CccccC--CC-CCCCCCCCCC Confidence 666665554322 1111110 0000 011110 11 1111111111 No 99 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.18 E-value=2.1e-10 Score=73.60 Aligned_cols=458 Identities=12% Similarity=0.089 Sum_probs=199.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcccccc---------CCHHHHHHHHHHHH---HhcCCCccccCccCCCcccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRIS---------IDPDEYVRIQTDLD---YYSDKLQYIHYQASDGIKKK 68 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~~~~~~i~~~~~---~Y~g~~~~~~~~~~~~~~~~ 68 (508) |+ -+ +++++++++..+++ ....+...+++|+. ||...... ...+..-.. T Consensus 1 ~~--~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~---~~~~~~~~~ 61 (584) T protein:vir:95 1 MS--VK--------------VAELNSLLVRDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTT---TTSNQGLPW 61 (584) T ss_pred CC--cc--------------hhhhhhhccccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhh---hhhhccccc Confidence 21 12 23333333211110 01112233444433 44332211 111111122 Q ss_pred ccccccchH----HHHHHHHHHhhhcCcceEee----CCcHHH--HHHH----HHHHHhhhHHHHHHHHHHHHhhcCCEE Q lcl|Aclame:pro 69 RLKNTINMA----KTAARRIASVVFNEKAEIHV----KDNNEA--DKFL----NDVLEDNDFKNKFEEALEKGVALGGFA 134 (508) Q Consensus 69 ~~~~~~n~~----~~iv~~~A~ll~~e~~~i~~----~~~~~~--~~~l----~~~l~~n~f~~~~~~~~~~a~~~G~~~ 134 (508) ++++.+|=. ..|+..+-+.+|+..-=+.+ .+++.+ ++.+ +.-|.+.+|...+.+.+.++..+|.++ T Consensus 62 r~~~~~~k~~~~~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~ 141 (584) T protein:vir:95 62 KNSTTLPKLCQIRDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAF 141 (584) T ss_pred ccccchhHHHHHHHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceE Confidence 334444433 34444445555554322221 112211 3344 444567799999999999999999999 Q ss_pred EEEEEeCC--------------eeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEE--ee------cCCcEEEE------- Q lcl|Aclame:pro 135 MRPYIDGN--------------HIKIAWVRADQFYPLQSNTNDISEAAIASRTQR--TE------SNQTKYYT------- 185 (508) Q Consensus 135 ~~~~~d~~--------------~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~--~~------~~~~~~yt------- 185 (508) .|++|..+ +++|+.++|..+|| .-..+.+..+.|+.+... .+ .+...+|- T Consensus 142 ~k~~~~~~~~e~~e~~~v~~~~~prieriSP~d~~~-Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~~ 220 (584) T protein:vir:95 142 ATVSFEAKYKEMTDGTLVPDYIGPRLVRISPLDIVF-NPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKRR 220 (584) T ss_pred EEEeEeecceeeeccccccccccceEEeeChhheee-cCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHHH Confidence 99999765 58899999999886 223345666655442221 00 00001110 Q ss_pred ----------------EEEEE-------EEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceee------cC Q lcl|Aclame:pro 186 ----------------LLEFH-------QWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI------SG 236 (508) Q Consensus 186 ----------------~lE~h-------~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~------~g 236 (508) .+|-. .|+..++++++-..|.+.-.+.. .-++...+...-+.....+ +- T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~--~~e~~~~~iv~v~~g~~iIR~~~np~~ 298 (584) T protein:vir:95 221 EEICRHLGGYSVEDFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKE--TGELQTNRIITVVDRSTEVRNESIPTW 298 (584) T ss_pred HHhccCCCCCcccccccccccccccccccccccCCceeEEEeecccccccc--cCCCcccceEEEEeccEEEEeeecCCC Confidence 00000 00000111111111111000000 0000000000000000000 11 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccce Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNV 315 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 315 (508) .++++|.+..+ +| ...|.+|.|+.+.+.++++.+|...-...+.+. +..| ++..++.... -.+.++..+ T Consensus 299 ~~~~PF~~~~~-~p---~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~p---v~k~~~~~~~---~~~~pg~~~ 368 (584) T protein:vir:95 299 FGSAPIYHVGW-RF---RPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQP---PLKIIGEVEE---FVWGPGAEI 368 (584) T ss_pred CCCCCEEEEcc-ee---eeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCc---ceeeccccch---hcccCCcee Confidence 23445554432 22 234778999999999999999999999988875 4444 2222222111 011122111 Q ss_pred EeeecCCCCCCCcceEeeccCCHHHHH---HHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 316 YVGVLSDDNNGLGVKDMTTPIRTVQYK---DAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 316 ~~~~~~~~~~~~~i~~~~~dir~e~~~---~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) ..+. ...++.+.|. ...+. ..|+.+...++..+|+++..-|.+..+.+||+++...-++.-.-++.+.+ T Consensus 369 ----~~~~--~~~~q~~~p~--a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa~~~~r~~~~ 440 (584) T protein:vir:95 369 ----HLDQ--GGDVQEIAKN--VNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAAGRIFQEKVT 440 (584) T ss_pred ----ecCC--CCCcceecCc--hhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHHHHHHHHHHH Confidence 1122 2236666653 33333 34566677888999999999999888899999988877777776777777 Q ss_pred HHHHHH-HHHHHHHHHHHhhhcccccccccccccc-------ccCcceEEEEeCC---Cc--cCCHHHHHHHHHHHHh-- Q lcl|Aclame:pro 393 MVEKAI-DELCQSIFELANAGALFDDGKPLFTLDS-------ASQPLDIECHFDD---GV--FVNKDKQLEEDAKVLA-- 457 (508) Q Consensus 393 ~~~~al-~~li~~i~~l~~~~~~~~~~~~~~~~~~-------~~~~~ei~i~f~d---~i--~~d~~~e~~~~~~~~~-- 457 (508) .|...| ++|+..+..++..+--+ .+........ .....++.-+|.- +. ...+++..+...+... T Consensus 441 ~f~~~ll~~l~~ll~~~~~~nmd~-~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq~~ 519 (584) T protein:vir:95 441 TFEVELLEPVLNAMLETATRNMDG-SDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFNSQ 519 (584) T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHHhh Confidence 777766 78888887775432111 1111111000 0001122222221 00 1122232333322222 Q ss_pred CC-----CCCHHH---HH---HhcCCC---------CHH-HHHHHHHHHHH--hccCCCCCCccc Q lcl|Aclame:pro 458 IG-----ALSKQT---FL---QRNYGM---------TDE-QAAEELAKIQS--EAPTDTFEGGRS 499 (508) Q Consensus 458 ~G-----i~s~et---~l---~~~~~~---------~de-ea~~e~~ri~~--E~~~~~~~~~~~ 499 (508) .| -++... .+ ++.|++ .+. +.++.+...++ ...+.++..++. T Consensus 520 ~~~~i~p~~~~~~l~~~ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~~~~~~ 584 (584) T protein:vir:95 520 IGQMILPHTSGKALATFVDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMPAEGAI 584 (584) T ss_pred hhhhccccchHHHHHHHHHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhhhccCC Confidence 11 122221 12 223421 111 01111111110 011112223333 No 100 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=99.13 E-value=1.6e-09 Score=68.88 Aligned_cols=470 Identities=11% Similarity=0.005 Sum_probs=220.1 Q ss_pred CC----hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccch Q lcl|Aclame:pro 1 MG----LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINM 76 (508) Q Consensus 1 m~----~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~ 76 (508) |. .+++++.+|+.- +.-.++-.....+..+||.|.. | ........+ ...+..+|. T Consensus 1 m~d~~~~~~~~~~~~~~~------------------~~~~~~~r~~a~~d~~fy~G~Q-w-~~~~~~~l~-~q~rp~~N~ 59 (725) T protein:vir:77 1 MADNENRLESILSRFDAD------------------WTASDEARREAKNDLFFSRVSQ-W-DDWLSQYTT-LQYRGQFDV 59 (725) T ss_pred CCchHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHhhCCCC-C-CHHHHHHHH-hcCCCcccc Confidence 43 333344443311 2223455667778899999863 2 211111111 112225688 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCcH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---C---- Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDNN--------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---G---- 141 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~~--------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---~---- 141 (508) -+-+|+...++--...+.+.+...+ .++..+..+.+.++.......+...++..|.+|+.++.| . T Consensus 60 i~~~i~~v~g~~~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~ 139 (725) T protein:vir:77 60 VRPVVRKLVSEMRQNPIDVLYRPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTS 139 (725) T ss_pred HHHHHHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCC Confidence 8888888888877777777764322 123344445556788888889999999999999998754 1 Q ss_pred CeeEEEEE----cCCeEEEEEEcCCC--eEEE--EEEEEEEEe----------------------------ecCCcEEEE Q lcl|Aclame:pro 142 NHIKIAWV----RADQFYPLQSNTND--ISEA--AIASRTQRT----------------------------ESNQTKYYT 185 (508) Q Consensus 142 ~~~~i~~v----~a~~~~Pi~~d~~~--~~~~--~f~~~~~~~----------------------------~~~~~~~yt 185 (508) +.++|..+ ++.+++.= +++.+ ...| +|+.++... +.......+ T Consensus 140 ~~~~i~~~~~~~~~~~v~~D-p~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vr 218 (725) T protein:vir:77 140 NNQVIRREPIHSACSHVIWD-SNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQ 218 (725) T ss_pred CceeeEEeecccChhhceeC-chhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCeeE Confidence 23444443 45555521 11111 1111 121111110 000112344 Q ss_pred EEEEEEEeCCceEEEEEEEEecCCccccCcccccc------------ccc-------------c-ccCCCcceeecCCCc Q lcl|Aclame:pro 186 LLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLS------------TLP-------------V-YKELAPQVTISGLQR 239 (508) Q Consensus 186 ~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~------------~~~-------------~-~~~l~~~~~~~g~~~ 239 (508) ..|+|+-. .+.-.+|...+.. .|..+.+. ..+ . |.-+.+.....+ +. T Consensus 219 v~E~~~r~-----~~~~~~~~~~~~~-tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~-~~ 291 (725) T protein:vir:77 219 IAEFYEVV-----EKKETAFIYQDPV-TGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKD-KQ 291 (725) T ss_pred EEEEEEEE-----EEeeEEEEecCCC-CcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeecc-CC Confidence 56665421 1111122111110 01111000 000 0 000011111111 00 Q ss_pred c-eEEEec-CCcccc--ccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccc Q lcl|Aclame:pro 240 P-LFAYFK-TPGANN--INIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQN 314 (508) Q Consensus 240 ~-~f~~~~-~~~~n~--~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 314 (508) | +..+|| +|+.-. ...+.|++-+.+.++++..+.+|...|..++.+- ..+.+..+....++....- .-..+.. T Consensus 292 ~~~~~~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 369 (725) T protein:vir:77 292 LIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHM--YDGNDDY 369 (725) T ss_pred cCCCCccceEEEeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhhHHHHH--HHhccCC Confidence 1 001111 122211 1235677779999999999999999999999874 3444555555554321110 0011111 Q ss_pred eEe---eec--CCCCCCCcceEee-ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 315 VYV---GVL--SDDNNGLGVKDMT-TPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRS 388 (508) Q Consensus 315 ~~~---~~~--~~~~~~~~i~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~ 388 (508) .|. .+. .+.-....+..++ +++ ..+++..++.....|...+|+....+|-.++. .++.++.++......... T Consensus 370 ~~~~~~~~~~~~g~~~~~~i~~~~~~~l-p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~-~SG~ai~~rq~qg~~~~~ 447 (725) T protein:vir:77 370 PYYLLNRTDENSGDLPTQPLAYYENPEV-PQANAYMLEAATSAVKEVATLGVDTEAVNGGQ-VAFDTVNQLNMRADLETY 447 (725) T ss_pred ceecccccccCCCcccccCccccCCCCc-hHHHHHHHHHHHHHHHHHhCCCHHHhCCCchh-hHHHHHHHHHHHHHHHHH Confidence 111 111 1111112344433 444 35677889999999999999999988876543 456677777766666666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hc---cc---c-cccc-c----------cccccc-----cCcceEEEEeCCCccCC Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANA-GA---LF---D-DGKP-L----------FTLDSA-----SQPLDIECHFDDGVFVN 444 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~-~~---~~---~-~~~~-~----------~~~~~~-----~~~~ei~i~f~d~i~~d 444 (508) .+...++.+++.+-+.++.+-.. |. .+ . .+.. . .+|... ...++|.|+=.-+.+.= T Consensus 448 ~~~Dnl~~~~~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~p~~~s~ 527 (725) T protein:vir:77 448 VFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSM 527 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeeccchHHH Confidence 67777777777777777666332 21 00 0 0000 0 000000 01244444433332222 Q ss_pred HHHHHHHHHHHHhCC--CCCHH-HHHHhcCC-CCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 445 KDKQLEEDAKVLAIG--ALSKQ-TFLQRNYG-MTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 445 ~~~e~~~~~~~~~~G--i~s~e-t~l~~~~~-~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +++..+.++++..+. +.+.- ..+..... .+-+.+++.+++++...+......+... ... T Consensus 528 r~~~~~~l~qll~~~~~~~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~~q~~~~-----~e~ 590 (725) T protein:vir:77 528 KQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETP-----EEQ 590 (725) T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhccCCCCh-----hhH Confidence 445555555555331 21211 12222222 2224456666777665443222111110 011 No 101 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.13 E-value=4.2e-10 Score=71.98 Aligned_cols=430 Identities=11% Similarity=0.034 Sum_probs=188.7 Q ss_pred CChHHHH--HHHHHHHHHhhhh------------hhhhHHhhccccccCCHHHHHHHHHHHHHhcC--CCccccCccCCC Q lcl|Aclame:pro 1 MGLIQRI--KDLFWKGAAATGV------------TGSLSKITDDPRISIDPDEYVRIQTDLDYYSD--KLQYIHYQASDG 64 (508) Q Consensus 1 m~~~~~i--k~~~~~~~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g--~~~~~~~~~~~~ 64 (508) |.+.++. ++.+....++-.. ..+|..........-+. ..|+.. -.+|+.+....+ T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~---------s~y~~~~~~~~~~~~~~f~g 136 (862) T protein:vir:99 66 VEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQ---------SSYAVPEALQDWYLSQGFIG 136 (862) T ss_pred ccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccc---------cccccchhccccccccCccc Confidence 2222211 1111111100000 00011100000000000 001110 012222211122 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCCc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEE Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDN-----NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYI 139 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~-----~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~ 139 (508) ...-..+....+++.+|+..|+-++.+.+.|++.++ +..-+.|.+.++.-+++..+.+++..+-.+|++++...+ T Consensus 137 yql~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv 216 (862) T protein:vir:99 137 HQACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVV 216 (862) T ss_pred HHHHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEe Confidence 111112335689999999999999999999987331 222356777777777888999999988889987765554 Q ss_pred eCC--eeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEe---------ecCCcEEEEEEEEEEEeCCceEEEEEEEEecC Q lcl|Aclame:pro 140 DGN--HIKIAWVRADQFYPLQSNTNDISEAAIASRTQRT---------ESNQTKYYTLLEFHQWQDNGSYQITNELYKSD 208 (508) Q Consensus 140 d~~--~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~---------~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~ 208 (508) ++. .-.-.-++++.+ .-+.+..+..+.++... +.... .|-.-+. |.|. T Consensus 217 ~~~D~~~LsqPLn~e~I-----~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp-~yGkP~~--------y~I~------- 275 (862) T protein:vir:99 217 DSEDPDYYEKPFNPDGI-----TPGSYRGISQIDPYWMMPMLTAESTADPSSQ-FFYEPEF--------WIIS------- 275 (862) T ss_pred cCcCchhhhcCcCcccc-----cccceeEEEEechhhhccccccccccccccc-ccCCcee--------eeec------- Confidence 321 100001111110 01122222222211100 00000 0101111 1111 Q ss_pred CccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 209 SPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG 288 (508) Q Consensus 209 ~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~ 288 (508) |..|.-+.+ +.+.|.+-| .+.+ | ....+|+|++..+.+.|..++.+......-+... T Consensus 276 -----g~~IH~SRl---------iif~g~~vp--d~lk-~------ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka 332 (862) T protein:vir:99 276 -----GQKYHRSHL---------IIARGPQPA--DILK-P------TYIFGGIPLVQRIYERVYAAERTANEAPLLAMNK 332 (862) T ss_pred -----Ceeecccee---------EEecCCCch--hhhh-c------cCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 111100000 111121111 0111 1 1224699999999999999998776665555444 Q ss_pred cceeeechHHhcC-CCCCC----ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh- Q lcl|Aclame:pro 289 QKHIAVQPGMLRF-DDEHK----PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT- 362 (508) Q Consensus 289 ~~~i~v~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~- 362 (508) ..+++-...+-.- +.+.. ..+...+..+..+..+.+ ..+++++.++ ......++...++|...++++... T Consensus 333 ~l~v~ktd~l~~l~~ed~l~~r~~~~~~~rdN~Gi~liD~e--Ee~e~ls~sl--SGL~dll~~~~q~IAaas~IP~tiL 408 (862) T protein:vir:99 333 RTTAIHTDTAKAIANEDKFIQRLMFWVRYRDNHAVKVLGTD--ETMEQFDTSL--ADFDAVIMGQYQLVASIAKTPATKL 408 (862) T ss_pred ccceeechhHhhhccHHHHHHHHHHHHhccCcceeEEecCC--CceeEEeccc--CChHHHHHHHHHHHHhhhCCCceee Confidence 4444432211110 11110 001111111111111211 2377666543 566678888888999999998874 Q ss_pred cccccccc-chHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCC Q lcl|Aclame:pro 363 FSYSNDGV-KTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDG 440 (508) Q Consensus 363 ~~~~~~~~-~TAtei~~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~ 440 (508) ||...+|. +|+.+=...| |..+..+| ..++..|+.|+..|. +. + + .+.+++|.|+.- T Consensus 409 fGqspaGlnATGE~D~~nY---yD~I~s~QE~~L~P~LerL~~li~-~~----l---g----------~~~d~~ieFnpL 467 (862) T protein:vir:99 409 LGTAPKGFNSTGEFETISY---HEELESIQEHVYMPFLQRHYLISR-LS----L---G----------IQHEIDVVMEPV 467 (862) T ss_pred cccCcccccCchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-Hh----c---C----------CCCcceEEeCCC Confidence 66554554 5665433333 44555544 567777777765432 21 0 0 123689999987 Q ss_pred ccCCHHHHHHH-------HHHHHhCCCCCHHHHHHh--------cCCCCHHHHHHHHHHHHHhcc------CCCCCCccc Q lcl|Aclame:pro 441 VFVNKDKQLEE-------DAKVLAIGALSKQTFLQR--------NYGMTDEQAAEELAKIQSEAP------TDTFEGGRS 499 (508) Q Consensus 441 i~~d~~~e~~~-------~~~~~~~Gi~s~et~l~~--------~~~~~deea~~e~~ri~~E~~------~~~~~~~~~ 499 (508) ...+..+.++. +.+++.+|+||..+++.. +.++++++++..-....++.. .+....+.. T Consensus 468 ~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~d 547 (862) T protein:vir:99 468 ASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETASAK 547 (862) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCccccccccc Confidence 77776666544 457788999999888764 344555544311100000000 000000001 Q ss_pred ccCCCC-----CCC Q lcl|Aclame:pro 500 AILNGG-----DGE 508 (508) Q Consensus 500 ~~~~~~-----~g~ 508 (508) +..++. .|| T Consensus 548 e~~aga~~~~~e~d 561 (862) T protein:vir:99 548 ETQAGAAVTTAEGD 561 (862) T ss_pred ccccccCCccccCC Confidence 111111 111 No 102 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.12 E-value=5.3e-10 Score=71.45 Aligned_cols=386 Identities=12% Similarity=0.073 Sum_probs=178.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC----CCccccccccccch Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS----DGIKKKRLKNTINM 76 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~----~~~~~~~~~~~~n~ 76 (508) |--.+...+.| .|-.+.-+.... ........+.+..+ T Consensus 1 ~~~~D~~~n~~---------------------------------------~gg~~~~~~~~~~~~~~~~~l~a~Y~~~~l 41 (422) T protein:vir:10 1 MVKTDSYANIF---------------------------------------LGGSDGSEIYGSLQNQAPTILASLYADNAL 41 (422) T ss_pred CccchhhHHHH---------------------------------------cCCCCCccccCcccccCHHHHHHHHHhChh Confidence 22222222221 111110000000 00000111234589 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEE Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYP 156 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~P 156 (508) ++.+|+..|.-++.+..+|+.+++. +.+..-++.-+++..+.+++..+-.+|++++.+-+.+++-.- -| T Consensus 42 ~~~~Vd~~aed~~r~g~~i~~~~~~---~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~--------~P 110 (422) T protein:vir:10 42 VRRIIDTIPETALAAGFHIDGIDDE---PAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALT--------SP 110 (422) T ss_pred hHHHHhhhhHHHhcCCccccCCCHH---HHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCcc--------cc Confidence 9999999999999998888754332 235555666688999999999999999998877764322100 12 Q ss_pred EEEcCCCeEEEEEEEEEEEe-----ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRT-----ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~-----~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) +.. .+.+..+..+.++... .......|-.-++| +|. +.+. ..+..| ||. -. T Consensus 111 l~~-~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~~y--------~v~-----~~~~-~~~~~i----H~S-----Rl 166 (422) T protein:vir:10 111 VRE-GAELETVRVYDRTQVKVQTREENPRNARFGEPLTY--------RIT-----TNES-DMFYDV----HYS-----RI 166 (422) T ss_pred ccc-cCceeeEEeeccccccchhcccCccccccCcceEE--------EEe-----cCCC-Ccceee----ccc-----ee Confidence 211 1222222111111100 00000011111111 111 1000 001111 110 00 Q ss_pred eeecCCCcceEEEecCCcccc-ccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHHhccceeeech---HHhcCCCCCC Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANN-INIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIRLGQKHIAVQP---GMLRFDDEHK 306 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~-~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~~~~~~i~v~~---~~~~~~~~~~ 306 (508) +.+.|.+ +++. ......+|.|++.. +.+.|..++.+......-+...+.+++--. +++..++... T Consensus 167 i~~~g~~----------~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~ 236 (422) T protein:vir:10 167 HIIDGER----------IPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFG 236 (422) T ss_pred EEeCCCC----------chhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchH Confidence 1112211 1111 11234469999986 678888898877666665544444444322 2222221111 Q ss_pred c------cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-cccccccc-chHHHHHH Q lcl|Aclame:pro 307 P------TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVS 378 (508) Q Consensus 307 ~------~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~ 378 (508) . .+.........+..++. +..+++++.++ ......++...++|...+|++... ||...+|. .|+.+-.. T Consensus 237 ~~~~r~~~~~~~~~~~~~~~l~~~-~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~ 313 (422) T protein:vir:10 237 AARLRLAQVDNNSGVGQAIGIDAE-SEEYSVLNSDI--GGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALE 313 (422) T ss_pred HHHHHHHHHHHhcCCccceeEecC-CcceEEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHH Confidence 0 01111112222222211 12377666543 567778888888999999988775 45555554 34444444 Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHH------- Q lcl|Aclame:pro 379 NNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLE------- 450 (508) Q Consensus 379 ~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~------- 450 (508) .+ |..++.+| ..++..|+.|+..+++ ..+++|.|+.-...+..+.++ T Consensus 314 ~y---yd~i~~~Qe~~l~p~l~~l~~~i~~----------------------s~~~~~~f~pL~~~sekekaei~~~~a~ 368 (422) T protein:vir:10 314 TF---HKLVDRKRNAELLPILEFLIPFIVN----------------------AEEWSVEFNPLAQESSKDKAEILEKNVN 368 (422) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHhcc----------------------cCCcEEEeCCCCCCCHHHHHHHHHHHHH Confidence 43 55666666 4578888888776542 125788899777777654443 Q ss_pred HHHHHHhCCCCCHHHHHHhc------CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 451 EDAKVLAIGALSKQTFLQRN------YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 451 ~~~~~~~~Gi~s~et~l~~~------~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+.+++.+|+++..+++..+ .+..+.-..++.+.. ++ ...+..+..+| T Consensus 369 a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~d 422 (422) T protein:vir:10 369 SIAALIAAGAMDIDEARDTLRTIAPEVKINDGSVETEVTIS-ET---------SNDPLEVPTDD 422 (422) T ss_pred HHHHHHhcCCCCHHHHHHHhhhhcccccCCCCCCccccchh-hc---------CCCCCCCCCCC Confidence 34555666777776655332 111110001111111 11 11112222222 No 103 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.11 E-value=2e-09 Score=68.33 Aligned_cols=432 Identities=10% Similarity=0.062 Sum_probs=204.4 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCc---cccCc-cCCCcc------------c--cccccccchHHH Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQ---YIHYQ-ASDGIK------------K--KRLKNTINMAKT 79 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~---~~~~~-~~~~~~------------~--~~~~~~~n~~~~ 79 (508) |. .-.++ .+++ ......+..||.+... .+... +..... . +.....-++++. T Consensus 1 ~~----~~~~~-----~~~~--~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~ 69 (530) T protein:vir:38 1 MK----IPSLV-----GPDG--KTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAAN 69 (530) T ss_pred Cc----cceee-----cCcc--ccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHH Confidence 11 00111 1121 2224455566754321 11110 100000 0 000112368999 Q ss_pred HHHHHHHhhhcCcceEeeC-----------CcHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHhhcCCEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVK-----------DNNEADKFLNDVLE--------------DNDFKNKFEEALEKGVALGGFA 134 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~-----------~~~~~~~~l~~~l~--------------~n~f~~~~~~~~~~a~~~G~~~ 134 (508) +++.+++.+.|..+++... .+...++.++..+. ..+|......++...+.-|.++ T Consensus 70 av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~ 149 (530) T protein:vir:38 70 AVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELC 149 (530) T ss_pred HHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceE Confidence 9999999999987655542 12222333444332 1246666667777788889998 Q ss_pred EEEEEeC--C---eeEEEEEcCCeEEEEEE---cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEe Q lcl|Aclame:pro 135 MRPYIDG--N---HIKIAWVRADQFYPLQS---NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYK 206 (508) Q Consensus 135 ~~~~~d~--~---~~~i~~v~a~~~~Pi~~---d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~ 206 (508) .++.++. | .+++..++|+.+ +... +.+.+...|-+... +...-| .+|+ T Consensus 150 ~~~~~~~~~g~~~~~~lq~ie~d~l-~~~~~~~~~~~i~~GIe~d~~-----Gr~~aY------------------~i~~ 205 (530) T protein:vir:38 150 VQATWDSDSTRLFRTQFKMVSPKRV-SNPNNIGDTRNCRAGVKINDS-----GAALGY------------------YVSD 205 (530) T ss_pred EEeeeccCCCCccceEEEEechhhc-CCCCCCCCCCeeEeeeEECCC-----CceEEE------------------EEee Confidence 8888764 2 368999999984 3212 22223333321110 111111 1221 Q ss_pred cCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 207 SDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR 286 (508) Q Consensus 207 ~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~ 286 (508) .......+ ..|..+.. ...++.+-+.++. .....+-.-|+|.|+.++..+..++.-...-...-+ T Consensus 206 ~~~~~~~~--------~~~~~~~~---~~~v~a~~vlH~f----~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~ 270 (530) T protein:vir:38 206 DGYPGWMA--------QNWTYIPR---ELPGGRPSFIHVF----EPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAI 270 (530) T ss_pred ccCCCccc--------cccceeee---eeccChhHeEeec----cccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHH Confidence 11000000 00100000 1123333344433 223334556999999999999999976554433322 Q ss_pred -hccceeeechHHhc---------CCCCCCcc----CCcccc-eE----eeecC----CCCCCCcceEeeccCCHHHHHH Q lcl|Aclame:pro 287 -LGQKHIAVQPGMLR---------FDDEHKPT----FDTEQN-VY----VGVLS----DDNNGLGVKDMTTPIRTVQYKD 343 (508) Q Consensus 287 -~~~~~i~v~~~~~~---------~~~~~~~~----~~~~~~-~~----~~~~~----~~~~~~~i~~~~~dir~e~~~~ 343 (508) .+.-..||-...-. .++.+... +..... .+ ..+.. .-..|..|+.++|+-+..++.. T Consensus 271 i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~ 350 (530) T protein:vir:38 271 VKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNGYST 350 (530) T ss_pred HhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCCHHH Confidence 23333344221100 00000000 000000 00 00100 0112345888999988899999 Q ss_pred HHHHHHHHHHHHhCCCchhcccccccc--chHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccccc Q lcl|Aclame:pro 344 AIDHFIKEFEVQIGLSTGTFSYSNDGV--KTATEVVSNNSMTYQTRSSYLTMVEKAI-DELCQSIFELANAGALFDDGKP 420 (508) Q Consensus 344 ~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~~~~~~l~~~~~~~~~~~~~al-~~li~~i~~l~~~~~~~~~~~~ 420 (508) -++.+++.|....|+++..++.+-++. .++.+......+.+..+. ..+...+ ..+.+..+..+-+. |.. T Consensus 351 f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q---~~~~~~~~~pi~~~wl~~av~~-----G~i 422 (530) T protein:vir:38 351 FEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRR---KFVASRQACQMFLCWLEEAIVR-----RVV 422 (530) T ss_pred HHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHc-----CCc Confidence 999999999999999999998775432 334444444444443332 2232222 22222222221111 111 Q ss_pred ccccccccC-------cceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHh---c- Q lcl|Aclame:pro 421 LFTLDSASQ-------PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSE---A- 489 (508) Q Consensus 421 ~~~~~~~~~-------~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E---~- 489 (508) ........+ -..+.+...--..+|+.++++.....+.+|+.|.+..+... |.+-+++.+++++-++. . T Consensus 423 ~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~G 501 (530) T protein:vir:38 423 TLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR-GDDYQEIFAQQVRESMERRAAG 501 (530) T ss_pred cCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcC Confidence 111111000 01234444555677999999999999999999999988875 77777665555443321 1 Q ss_pred cCCC-------CCCcccccCCCCCCC Q lcl|Aclame:pro 490 PTDT-------FEGGRSAILNGGDGE 508 (508) Q Consensus 490 ~~~~-------~~~~~~~~~~~~~g~ 508 (508) -..+ ..+...+..+..||+ T Consensus 502 l~~~~~~~~~~~~~~~~~~~~~~d~~ 527 (530) T protein:vir:38 502 LNPPAWAAAAFEAGVKKSNEEEQDGA 527 (530) T ss_pred CCCCCCcccccCCCCCCCCCCCCCCC Confidence 1110 011111222222333 No 104 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=99.10 E-value=2.1e-09 Score=68.14 Aligned_cols=477 Identities=11% Similarity=-0.003 Sum_probs=216.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) =..+++++.+|+.-. .-.++-.....+..+||.|.. | ........+ ...+..+|.-+-+ T Consensus 5 ~~~~~~~~~~~~~~~------------------~~~~~~r~~a~~d~~fy~G~Q-w-~~~~~~~l~-~q~rp~~N~i~~~ 63 (725) T protein:vir:92 5 ENRLESILSRFDADW------------------TASDEARREAKNDLFFSRISQ-W-DDWLSQYTT-LQYRGQFDVVRPV 63 (725) T ss_pred HHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHhhcCCC-C-CHHHHHHHH-hcCCCcccchHHH Confidence 123444444443222 223455667788899999863 2 111111111 1112246887888 Q ss_pred HHHHHHhhhcCcceEeeCCcH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---C----CeeE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN--------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---G----NHIK 145 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~--------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---~----~~~~ 145 (508) |+...++--...+.+.+...+ .++..+..+.+.++.......+...++..|.+|+.++.| . +.++ T Consensus 64 i~~v~g~e~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~ 143 (725) T protein:vir:92 64 VRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSNNQV 143 (725) T ss_pred HHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCCCcee Confidence 888888777777777663321 123344455556788888899999999999999998754 1 3344 Q ss_pred EEEE----cCCeEEEEEEcCCC--eEEE--EEEEEEEEe----------------------------ecCCcEEEEEEEE Q lcl|Aclame:pro 146 IAWV----RADQFYPLQSNTND--ISEA--AIASRTQRT----------------------------ESNQTKYYTLLEF 189 (508) Q Consensus 146 i~~v----~a~~~~Pi~~d~~~--~~~~--~f~~~~~~~----------------------------~~~~~~~yt~lE~ 189 (508) |..+ |..++|.= +++.+ +..| +|+.++... +.......+.+|+ T Consensus 144 i~~~~i~~~~~~V~~D-p~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~e~ 222 (725) T protein:vir:92 144 IRREPIHSACSHVIWD-SNSKLMDKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEF 222 (725) T ss_pred eEEeeccCChhhcccC-chhhccChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEEEEEE Confidence 4443 23334421 11110 1111 111111100 0001123345565 Q ss_pred EEEeCCceEEEEEEEEecCCccccCcccccc-----cc--------------------ccc-cCCCcceeecCCCcceEE Q lcl|Aclame:pro 190 HQWQDNGSYQITNELYKSDSPDIVGNQVPLS-----TL--------------------PVY-KELAPQVTISGLQRPLFA 243 (508) Q Consensus 190 h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~-----~~--------------------~~~-~~l~~~~~~~g~~~~~f~ 243 (508) |+-. .+.-.+|...+.. -|..+.+. .+ ..+ .-+.......+-+-.+.. T Consensus 223 ~~r~-----~~~~~~~~~~d~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~ 296 (725) T protein:vir:92 223 YEVV-----EKKETAFIYQDPV-TGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGE 296 (725) T ss_pred EEEE-----EEeeeEEeecCCC-CCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCCCCC Confidence 5421 1111222211110 01111000 00 000 000010111110000011 Q ss_pred Eec-CCccccc--cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEee- Q lcl|Aclame:pro 244 YFK-TPGANNI--NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVG- 318 (508) Q Consensus 244 ~~~-~~~~n~~--~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~- 318 (508) +|| +|+.-.. ..+.|.+-+.+.++++..+.+|...|..++.+- ..+.+..++...+.....- .. ..+...+.. T Consensus 297 ~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~ 374 (725) T protein:vir:92 297 HIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHM-YD-GNDDYPYYLL 374 (725) T ss_pred ceeeEEEEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHH-Hh-ccCccceeec Confidence 121 1322111 245677779999999999999999999999884 4555556666555321100 00 111111111 Q ss_pred --e--cCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 319 --V--LSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 319 --~--~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) + +.+.-....++.+++.--..++...++.....|...+|++...+|-.++. .++.+|.++..............+ T Consensus 375 ~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~-~SG~ai~~rq~qg~~~l~~~~Dnl 453 (725) T protein:vir:92 375 NRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQ-VAYDTVNQLNMRADLETYVFQDNL 453 (725) T ss_pred cccccccccccccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCchh-hHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11111122344444433356788899999999999999999888876543 456667777666666666666667 Q ss_pred HHHHHHHHHHHHHHHhh-hc---ccc----cccccc---ccc-------------cccCcceEEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 395 EKAIDELCQSIFELANA-GA---LFD----DGKPLF---TLD-------------SASQPLDIECHFDDGVFVNKDKQLE 450 (508) Q Consensus 395 ~~al~~li~~i~~l~~~-~~---~~~----~~~~~~---~~~-------------~~~~~~ei~i~f~d~i~~d~~~e~~ 450 (508) +.+.+.+-+.++.+-.. |. .+- ++...+ ... .....++|.|+=.-+.+.-+++..+ T Consensus 454 ~~~~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~ 533 (725) T protein:vir:92 454 ATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRA 533 (725) T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHHH Confidence 77777766666665322 21 000 000000 000 0001244444433332322445555 Q ss_pred HHHHHHhC-C-CCCH-HHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 451 EDAKVLAI-G-ALSK-QTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 451 ~~~~~~~~-G-i~s~-et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .++++..+ + +.+. -..+.......+ +-+.+.+++++...++.....+......-.-=+ T Consensus 534 ~l~ql~~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~~ 595 (725) T protein:vir:92 534 EILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVE 595 (725) T ss_pred HHHHHHHhcccchhHHHHHHHHHhhcccchHHHHHHHHHHhhhchhccCCccchhhhHHHHH Confidence 55555432 1 1111 112222111211 234445555654433222111111000000000 No 105 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.07 E-value=5.6e-10 Score=71.32 Aligned_cols=389 Identities=13% Similarity=0.109 Sum_probs=179.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCcccc---CccCCCccccccccccchH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIH---YQASDGIKKKRLKNTINMA 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~---~~~~~~~~~~~~~~~~n~~ 77 (508) |.+|. .-++..++ .|..+.-. .....+-.....+.+..++ T Consensus 1 ~~~~~---------------~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~ 43 (427) T protein:vir:10 1 MKIVK---------------HDGYNDIF----------------------NGGADGSPKPFFMSDASYHVGSFYNDNATA 43 (427) T ss_pred CCccc---------------cchHHHHh----------------------hcCCCCcccCccccCchHHHHHHHHcCchh Confidence 22221 11111111 11100000 0001111111122345789 Q ss_pred HHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEEEcCCeEEE Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIAWVRADQFYP 156 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~v~a~~~~P 156 (508) +.+|+..|.-++.+..+|+..+++ +.++..++.-+++..+.+++..+-.+|++++.+-++++.. .-+.++ T Consensus 44 ~~~Vd~~aed~~r~g~~i~g~~~~---~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~------ 114 (427) T protein:vir:10 44 KRIVDVIPEEMVTAGFKMSGVKDE---KEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKP------ 114 (427) T ss_pred hhhhccchHHhhcCCccccCccHH---HHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCC------ Confidence 999999999999998888854322 3466666666889999999999999999998877765432 111111 Q ss_pred EEEcCCCeEEEEEEEEEEEee-----cCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTE-----SNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~-----~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) .+.+..+..+.++...- ......|-.-++ |+| .+.+ ..-+..|.-+. . T Consensus 115 ----~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~--------y~v-----~~~~-~~~~~~iH~SR---------l 167 (427) T protein:vir:10 115 ----GAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEI--------YKV-----SPGD-NMQPYLIHHSR---------V 167 (427) T ss_pred ----CcceeEEEEechhcccccccccCccccccCcceE--------EEE-----ecCC-CCcceEEcccc---------E Confidence 12222222222111000 000000000111 111 0000 00001111000 0 Q ss_pred eeecCCCcceEEEecCCcccc-ccCCCcCCcchhhh-HHHHHHHHHHHHHHHHHHHHhccceeeech---HHhcCCCCCC Q lcl|Aclame:pro 232 VTISGLQRPLFAYFKTPGANN-INIESPLGLGVVDN-AKHVLDDINDTHDQFIWEIRLGQKHIAVQP---GMLRFDDEHK 306 (508) Q Consensus 232 ~~~~g~~~~~f~~~~~~~~n~-~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~~~~~~i~v~~---~~~~~~~~~~ 306 (508) +.+.|.+ +++- ....+.+|.|++.. +.+.+..++.+......-+...+.+++--. +++..++... T Consensus 168 i~~~g~~----------~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~ 237 (427) T protein:vir:10 168 FIADGER----------VAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQY 237 (427) T ss_pred EEecCCC----------chhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCccchH Confidence 1112211 1111 11234578998865 668788888777666555544444444222 2332222111 Q ss_pred cc------CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhc-ccccccc-chHHHHHH Q lcl|Aclame:pro 307 PT------FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTF-SYSNDGV-KTATEVVS 378 (508) Q Consensus 307 ~~------~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~-~TAtei~~ 378 (508) .. +.........+..++ .+..+++++.++ ......++...+.|...+|++..-+ |...+|. .|+.+-.. T Consensus 238 ~~~~r~~~~~~~~~~~~~~~l~~-~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~ 314 (427) T protein:vir:10 238 AARLRLAQVDDNSGVGRAIGIDA-ETEEYDVLNSDI--SGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALE 314 (427) T ss_pred HHHHHHHHHHHhcCcccceeeec-CCCceeEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHH Confidence 10 111111222222221 112477666543 5667778888889999999887754 5444454 44544433 Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHH------- Q lcl|Aclame:pro 379 NNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLE------- 450 (508) Q Consensus 379 ~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~------- 450 (508) .+ |..++.+| ..++..|+.|+..+++ ..+++|.|+.-...+..+.++ T Consensus 315 ny---yd~i~~~Qe~~l~p~l~~l~~~i~~----------------------s~~~~~~f~pL~~~s~kEkaei~~~~a~ 369 (427) T protein:vir:10 315 TF---YKLVDRKREEDYRPLLEFLLPFIVD----------------------EEEWSIEFEPLSVPSKKEESEITKNNVE 369 (427) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHhhc----------------------CCCcEEEeCCCCCCCHHHHHHHHHHHHH Confidence 34 55555555 5677788777776442 025789999877777665543 Q ss_pred HHHHHHhCCCCCHHHHHHhc------CCCCH-HHH-HHHHHHHHHhccCCCCCCcccccCCCCC Q lcl|Aclame:pro 451 EDAKVLAIGALSKQTFLQRN------YGMTD-EQA-AEELAKIQSEAPTDTFEGGRSAILNGGD 506 (508) Q Consensus 451 ~~~~~~~~Gi~s~et~l~~~------~~~~d-eea-~~e~~ri~~E~~~~~~~~~~~~~~~~~~ 506 (508) .+.+++.+|+++.+.++..+ .+..+ .++ .++.++ .+ .++++......+.+ T Consensus 370 a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~~~e~~~~-----~~-e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 370 SVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNNINIREPEE-----TT-EPEPGLGEKLEDEN 427 (427) T ss_pred HHHHHHhcCCCCHHHHHHHHHhhhccccCCCCccccccccch-----hc-CCCCCCCCCCCCCC Confidence 34556677777777665432 11111 000 111110 00 01111111111111 No 106 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.05 E-value=3.9e-09 Score=66.71 Aligned_cols=430 Identities=10% Similarity=0.071 Sum_probs=207.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCc------cccCccCCCccc------- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQ------YIHYQASDGIKK------- 67 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~------~~~~~~~~~~~~------- 67 (508) |+++++...+..+. +...-....+-|.+--. |. .++.....+ T Consensus 8 ~~~~dr~i~~~~~~------------------------~~~~~~~~~~~y~aa~~~r~~~~w~-~~~~~~s~~~~i~~~~ 62 (505) T protein:vir:96 8 PSLAQRMVNWAWYR------------------------YVEPQKNAARAFEAARRDRLGKAWL-RRASRLSADEEIYADL 62 (505) T ss_pred cchhhcccchhhhh------------------------hHHHHHHhhhhcccccCCCcccccc-CCCCCCChHHHHHHHH Confidence 77777765543211 11111222233432211 10 000000000 Q ss_pred -------cccccccchHHHHHHHHHHhhhcC-cceEeeC-------CcHHHHHHHHHHHHh------------hhHHHHH Q lcl|Aclame:pro 68 -------KRLKNTINMAKTAARRIASVVFNE-KAEIHVK-------DNNEADKFLNDVLED------------NDFKNKF 120 (508) Q Consensus 68 -------~~~~~~~n~~~~iv~~~A~ll~~e-~~~i~~~-------~~~~~~~~l~~~l~~------------n~f~~~~ 120 (508) .......++++-+++.+++.+.|. .+++... -++..++.++..+.. .+|.... T Consensus 63 ~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq 142 (505) T protein:vir:96 63 ASLVQRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLL 142 (505) T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHH Confidence 000112368899999999999984 5555432 123344444444332 2366666 Q ss_pred HHHHHHHhhcCCEEEEEEEeCCe---eEEEEEcCCeEEEEEEc-----CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEE Q lcl|Aclame:pro 121 EEALEKGVALGGFAMRPYIDGNH---IKIAWVRADQFYPLQSN-----TNDISEAAIASRTQRTESNQTKYYTLLEFHQW 192 (508) Q Consensus 121 ~~~~~~a~~~G~~~~~~~~d~~~---~~i~~v~a~~~~Pi~~d-----~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~ 192 (508) ..++...+.-|.++++..+..+. +++..++|+.+ +...+ .+.+...|-+.. .+...-|. T Consensus 143 ~l~~r~~~~dGE~f~~~~~~~~~~~~~~lqliepd~l-~~~~n~~~~~~~~i~~GIe~d~-----~Gr~~aY~------- 209 (505) T protein:vir:96 143 HLWMETLARDGEVLVREHRGYPNKWGYALQILECDRL-DLNYNADLQNGNRIRMSIELDA-----WERPVAYH------- 209 (505) T ss_pred HHHHHHHhhCCceEEEEeecCCCCcceEEEEechhhc-CCCCCcccCCcCeEEeceEECC-----CCceEEEE------- Confidence 77777778888888887776443 68999999984 32111 122333332111 11111222 Q ss_pred eCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHH Q lcl|Aclame:pro 193 QDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLD 272 (508) Q Consensus 193 ~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid 272 (508) +++.+..+..... -.....| .-++.+-+. ++......+-.-|+|.|+.++..+. T Consensus 210 -----------i~~~hPgd~~~~~--~~~~~~~---------~rvpa~~vl----H~f~~~r~gQ~RGis~lapvl~~l~ 263 (505) T protein:vir:96 210 -----------LLVNHPGDNSYCY--HYAGQTY---------ERVPADEII----HTFVPWRPHQNRGIPWTHASMVELH 263 (505) T ss_pred -----------EeecCCCcccccc--ccccccc---------cccCHhHhh----hhhcccCCccccCcchHHHHHHHHH Confidence 2222211100000 0000000 011111111 1222333344569999999999999 Q ss_pred HHHHHHHHHHHHHH-hccceeeechHHhcCCCCC--CccCCcccceEeeecC----CCCCCCcceEeeccCCHHHHHHHH Q lcl|Aclame:pro 273 DINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEH--KPTFDTEQNVYVGVLS----DDNNGLGVKDMTTPIRTVQYKDAI 345 (508) Q Consensus 273 ~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~dir~e~~~~~l 345 (508) .++.-.+.-...-+ .+--..||- .+... ....+........+.. .-..|..++.++|+-+..++..-+ T Consensus 264 ~l~~y~dael~~a~i~A~~a~fi~-----~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~ 338 (505) T protein:vir:96 264 HIGEYRKSEMIAAELGAKKVGFYE-----QDPEAYDQPPEDDQGEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFV 338 (505) T ss_pred HHhHHHHHHHHHHHHhhhheeeee-----cCCccCCCccccccCccccccCCceeeecCCCCeeeeeCCCCCCCCHHHHH Confidence 99986655444333 333334442 22111 1111111111111110 112334689999998889999999 Q ss_pred HHHHHHHHHHhCCCchhccccccc-c-chHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccccccc Q lcl|Aclame:pro 346 DHFIKEFEVQIGLSTGTFSYSNDG-V-KTATEVVSNNSMTYQTRSSYLTMVEK-AIDELCQSIFELANAGALFDDGKPLF 422 (508) Q Consensus 346 ~~~l~~i~~~~g~s~~~~~~~~~~-~-~TAtei~~~~~~l~~~~~~~~~~~~~-al~~li~~i~~l~~~~~~~~~~~~~~ 422 (508) +.+++.|....|+++..++.+-++ . .++.+......+.+.. .+..+.. .++.+.+..+..+-+.+..+. T Consensus 339 ~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~---~q~~~~~~~~~pi~~~~l~~a~l~G~i~~----- 410 (505) T protein:vir:96 339 KSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKL---LQFFVVTELLERVAGNLISMSLLTQALPL----- 410 (505) T ss_pred HHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCcCC----- Confidence 999999999999999999877443 2 3343333333333333 2222332 222233333333322222211 Q ss_pred ccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHh---ccC------CC Q lcl|Aclame:pro 423 TLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSE---APT------DT 493 (508) Q Consensus 423 ~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E---~~~------~~ 493 (508) .+.....-..+.+...--...|+.+++......+.+|+.|.+..+... |.+-+++.+++++-++. ..- .. T Consensus 411 p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~ 489 (505) T protein:vir:96 411 NMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAA-GDDPEDVFDEIAWEEQLMRDKGVNPTPPEQE 489 (505) T ss_pred CCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCC Confidence 111011111244444444557999999999999999999999998875 88777765555443321 111 01 Q ss_pred CCCcccccCCCCCCC Q lcl|Aclame:pro 494 FEGGRSAILNGGDGE 508 (508) Q Consensus 494 ~~~~~~~~~~~~~g~ 508 (508) .......-..+..+| T Consensus 490 ~~~~~~~~~~~~~~d 504 (505) T protein:vir:96 490 SKDATTDEEDDSASD 504 (505) T ss_pred CCCCCCCCCCCCCCC Confidence 111111112222222 No 107 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.05 E-value=3.9e-09 Score=66.67 Aligned_cols=481 Identities=11% Similarity=0.038 Sum_probs=222.6 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc-----CCCccccccccccchH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA-----SDGIKKKRLKNTINMA 77 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-----~~~~~~~~~~~~~n~~ 77 (508) |=++.++++++...++ .... ....+-+.+..+-++||.+..+.|.... ..+.-..+..++.|.- T Consensus 1 m~~~~~~~~~~~~~~~------~~~~-----~~~~~~r~~~~~D~~f~~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i 69 (708) T protein:vir:10 1 MAETLEKKHERIMLRF------DRAY-----SPQKEVREKCIEATRFARVPGGQWEGATAAGTKLDEQFEKYPKFEINKV 69 (708) T ss_pred CchhHHHHHHHHHHHH------HHHH-----HhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhcCCCceEEcch Confidence 4444444444333331 1111 2234455666666778753332222111 1222224556788999 Q ss_pred HHHHHHHHHhhhcCcceEeeCCc-----HH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe-------- Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDN-----NE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID-------- 140 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~-----~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d-------- 140 (508) +.+|+...++--...+.+.+... .. ++..+..+.+.++.......+...++..|-+|+..+.| T Consensus 70 ~~~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~ 149 (708) T protein:vir:10 70 ATELNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPM 149 (708) T ss_pred HHHHHHHHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCC Confidence 99999999998888888776421 11 23344455566788889999999999999999988654 Q ss_pred --CCeeEEEEE--cCCeEE--EEEEcCCCeEEEEEE--EEEEEe-------------------------ecCCcEEEEEE Q lcl|Aclame:pro 141 --GNHIKIAWV--RADQFY--PLQSNTNDISEAAIA--SRTQRT-------------------------ESNQTKYYTLL 187 (508) Q Consensus 141 --~~~~~i~~v--~a~~~~--Pi~~d~~~~~~~~f~--~~~~~~-------------------------~~~~~~~yt~l 187 (508) +.+++|..+ |...++ |.... -....+-|+ .++... +..+.+..... T Consensus 150 ~~~~~i~i~~~~~p~~~v~~Dp~a~~-~D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v~ 228 (708) T protein:vir:10 150 DDRQRIAIEPIYDPSRSVWFDPDAKK-YDKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYIA 228 (708) T ss_pred CCccccceEEeecchhhcccCccccc-cChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCceEEE Confidence 123444443 334554 22111 122222221 111100 00011122334 Q ss_pred EEEEEeCCceEEEEEEE-----------EecCCccccCcccccccccc-----------c-cCCCcceeecCCCcceEEE Q lcl|Aclame:pro 188 EFHQWQDNGSYQITNEL-----------YKSDSPDIVGNQVPLSTLPV-----------Y-KELAPQVTISGLQRPLFAY 244 (508) Q Consensus 188 E~h~~~~~g~~~I~~~l-----------y~~~~~~~lG~~v~l~~~~~-----------~-~~l~~~~~~~g~~~~~f~~ 244 (508) |+|+.... .....+ |.+.....+........+.. + .-+.......+-...++.+ T Consensus 229 ey~~r~~~---~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~p~~~ 305 (708) T protein:vir:10 229 KYYEVRKE---SVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEH 305 (708) T ss_pred EeeeEEEE---EEEEEEEecCCCCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCCCCCc Confidence 44431110 000011 11111000000000000000 0 0000000011111122333 Q ss_pred ec-CCccccc--cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceee-echHHhcCCCCCCccCCcccceEeeec Q lcl|Aclame:pro 245 FK-TPGANNI--NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIA-VQPGMLRFDDEHKPTFDTEQNVYVGVL 320 (508) Q Consensus 245 ~~-~~~~n~~--~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~-v~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (508) || +|+.-.. ..+.|.+-+.+.++++.++.+|...|...+.+-.....++ ++...+..-...-..+......|.... T Consensus 306 fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 385 (708) T protein:vir:10 306 IPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLR 385 (708) T ss_pred eeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhhhccc Confidence 33 2332111 1345545577899999999999999999998754433333 322222110000011122222222111 Q ss_pred C-CC------CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 321 S-DD------NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 321 ~-~~------~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~ 393 (508) . .+ ..+..+..+++.--..++...++.....|...+|+++..+|-.+ + .|+.+|................. T Consensus 386 ~~~~~~G~~~~~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~~s-n-~SG~aI~~rq~qg~~~l~~~~Dn 463 (708) T protein:vir:10 386 EVRDKSGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQMPS-N-IAQETVNNLMNRADMASFIYLDN 463 (708) T ss_pred cccccccccccccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccCcc-c-hHHHHHHHHHHHHHHHHHHHHHH Confidence 0 00 11112344454334566788999999999999999999888533 3 47888888877766666677777 Q ss_pred HHHHHHHHHHHHHHHHhhh----cccc----ccc-----------ccccc------ccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAG----ALFD----DGK-----------PLFTL------DSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~----~~~~----~~~-----------~~~~~------~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) ++.+++..-+.++.+...+ ..+- ++. ...+| ......++|.|+=..+.+.-+++. T Consensus 464 l~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~r~~~ 543 (708) T protein:vir:10 464 MAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDAT 543 (708) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhHHHHH Confidence 7777777777666664322 1110 000 00000 011112344444333444455666 Q ss_pred HHHHHHHHhCCC-CCHHH-----HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 449 LEEDAKVLAIGA-LSKQT-----FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi-~s~et-----~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+.++++..... ..+.+ .+..+-++.- +++.+++|+...+......+.. ..+ T Consensus 544 ~~~l~qll~~~~p~~~~~~~~~~~~l~~~D~p~--~~ei~erir~~~~~~~~~~~~~------~ee 601 (708) T protein:vir:10 544 VSVLTNVLSSMLPTDPMRPAIQGIILDNIDGEG--LDDFKEYNRNQLLISGIAKPRN------EKE 601 (708) T ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhcCCcC--hHHHHHHHHHhhcccccccccc------hhh Confidence 666776654432 11111 1222222211 4445556655543222111111 111 No 108 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.04 E-value=4e-09 Score=66.60 Aligned_cols=436 Identities=9% Similarity=0.060 Sum_probs=202.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCc---cccC-ccCCCccc--------- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQ---YIHY-QASDGIKK--------- 67 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~---~~~~-~~~~~~~~--------- 67 (508) |.+ ...-.... .+....-..+..||.|... .+.. ++.....+ T Consensus 1 ~~~------------------p~~~~~~~-------~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~ 55 (533) T protein:vir:34 1 MKT------------------PTIPTLLG-------PDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTR 55 (533) T ss_pred CCC------------------chhhhhhc-------ccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHH Confidence 111 11111111 1111222344455654321 0111 00000000 Q ss_pred -----cccccccchHHHHHHHHHHhhhcCcceEeeCC-----------cHHHHHHHHHHHH--------------hhhHH Q lcl|Aclame:pro 68 -----KRLKNTINMAKTAARRIASVVFNEKAEIHVKD-----------NNEADKFLNDVLE--------------DNDFK 117 (508) Q Consensus 68 -----~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~-----------~~~~~~~l~~~l~--------------~n~f~ 117 (508) ......-++++..++.+++.+.|..+++...- ++..++.++..+. ..+|. T Consensus 56 lr~RaRdl~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~ 135 (533) T protein:vir:34 56 GNARADDLVRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFT 135 (533) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHH Confidence 00011236889999999999999876665421 1122233333321 12466 Q ss_pred HHHHHHHHHHhhcCCEEEEEEEeC--C---eeEEEEEcCCeEE-EE-EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEE Q lcl|Aclame:pro 118 NKFEEALEKGVALGGFAMRPYIDG--N---HIKIAWVRADQFY-PL-QSNTNDISEAAIASRTQRTESNQTKYYTLLEFH 190 (508) Q Consensus 118 ~~~~~~~~~a~~~G~~~~~~~~d~--~---~~~i~~v~a~~~~-Pi-~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h 190 (508) .....++...+.-|.++.+..+.. | .+++..++|+.+- |. ..+++.+...|-+.. T Consensus 136 ~~q~l~~r~~~~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~------------------ 197 (533) T protein:vir:34 136 MMIREGVAMHAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQIND------------------ 197 (533) T ss_pred HHHHHHHHHHHhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECC------------------ Confidence 666777788889999998888864 2 4688999999842 21 112233333332111 Q ss_pred EEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHH Q lcl|Aclame:pro 191 QWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHV 270 (508) Q Consensus 191 ~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~l 270 (508) .|. .+-|.+++....+..+. .+..++. ...++.+-+.++. .....+-.-|+|.|+.++.. T Consensus 198 ----~Gr-~~aY~i~~~~~~~~~~~--~~~~~~~---------~~~v~a~~VlH~f----~~~r~gQ~RGis~lapvl~~ 257 (533) T protein:vir:34 198 ----SGA-ALGYYVSEDGYPGWMPQ--KWTWIPR---------ELPGGRASFIHVF----EPVEDGQTRGANVFYSVMEQ 257 (533) T ss_pred ----CCC-eEEEEEeecCCCCcccc--ccceeee---------eeccChhHeeeec----cccCCCcccCCchHHHHHHH Confidence 110 11122222211111000 0001110 1122333333332 22333455699999999999 Q ss_pred HHHHHHHHHHHHHHHH-hccceeeechHHhc---------CCCC-CCccCCcc----cceEe----eecC----CCCCCC Q lcl|Aclame:pro 271 LDDINDTHDQFIWEIR-LGQKHIAVQPGMLR---------FDDE-HKPTFDTE----QNVYV----GVLS----DDNNGL 327 (508) Q Consensus 271 id~lD~~~s~~~~e~~-~~~~~i~v~~~~~~---------~~~~-~~~~~~~~----~~~~~----~~~~----~~~~~~ 327 (508) +..++.-.+.-...-+ .+.-..||-...-. ..+. ....+... ...+. .+.. .-..|. T Consensus 258 l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe 337 (533) T protein:vir:34 258 MKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGD 337 (533) T ss_pred HHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCC Confidence 9999976555443322 33334444211100 0000 00000000 00000 0100 012233 Q ss_pred cceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc-c-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 328 GVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG-V-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQS- 404 (508) Q Consensus 328 ~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~- 404 (508) .++.++|.-+..++..-+..+++.|....|+++..++.|-++ . .++........+.+..+. ..+...+-+-++. T Consensus 338 ~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q---~~~~~~~~~pi~~~ 414 (533) T protein:vir:34 338 SLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRR---KFVASRQASQMFLC 414 (533) T ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH Confidence 588888888888999999999999999999999999887443 2 334444444444443333 2233333222222 Q ss_pred HHHHHhhhccccccccccccccc-----cCc--ceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHH Q lcl|Aclame:pro 405 IFELANAGALFDDGKPLFTLDSA-----SQP--LDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQ 477 (508) Q Consensus 405 i~~l~~~~~~~~~~~~~~~~~~~-----~~~--~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~dee 477 (508) .+..+-+.+ .....+... ... ..+.+...--..+|+.++++.....+.+|++|.+..+... |.|-++ T Consensus 415 wl~~ail~G-----~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~-G~D~~e 488 (533) T protein:vir:34 415 WLEEAIVRR-----VVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR-GDDYQE 488 (533) T ss_pred HHHHHHHcC-----cccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHH Confidence 222221111 111111110 001 1234444555677999999999999999999999988876 777776 Q ss_pred HHHHHHHHHHhcc----CCCCCC---cccccCCCCCCC Q lcl|Aclame:pro 478 AAEELAKIQSEAP----TDTFEG---GRSAILNGGDGE 508 (508) Q Consensus 478 a~~e~~ri~~E~~----~~~~~~---~~~~~~~~~~g~ 508 (508) +.+++++-++... ..+..+ ..++...+..++ T Consensus 489 v~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~ 526 (533) T protein:vir:34 489 IFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEE 526 (533) T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCC Confidence 6555544332211 111001 000101111111 No 109 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=99.03 E-value=4.6e-09 Score=66.30 Aligned_cols=474 Identities=11% Similarity=0.005 Sum_probs=218.0 Q ss_pred CC----hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccch Q lcl|Aclame:pro 1 MG----LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINM 76 (508) Q Consensus 1 m~----~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~ 76 (508) |. .+++++.+|+.- +.-.++-.....+..+||.|.. | ........+ ...+..+|. T Consensus 1 m~d~~~~~~~~~~~~~~~------------------~~~~~~~R~~a~~d~~fy~G~Q-W-~~~~~~~l~-~q~rp~~N~ 59 (725) T protein:vir:10 1 MADNENRLESILSRFDAD------------------WTASDEARREAKNDLFFSRVSQ-W-DDWLSQYTT-LQYRGQFDV 59 (725) T ss_pred CCchHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHhhcCCC-C-CHHHHHHHH-hcCCCcccc Confidence 32 333344443311 2223455667888899999863 2 111111111 111225688 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCcH----H----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---C---- Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDNN----E----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---G---- 141 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~~----~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---~---- 141 (508) -+.+|+...++--...+.+.+...+ . ++..+..+.+.++.......+...++..|.+|+.+.+| . T Consensus 60 i~~~v~~v~g~e~~nr~d~~v~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~ 139 (725) T protein:vir:10 60 VRPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTS 139 (725) T ss_pred hHHHHHHHHhhHHhCCcceEEecCCcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCC Confidence 8889999888887777777764322 1 23344445556788888889999999999999998754 1 Q ss_pred CeeEEEEE----cCCeEEEEEEcCC--CeEEE--EEEEEEEEe----------------------------ecCCcEEEE Q lcl|Aclame:pro 142 NHIKIAWV----RADQFYPLQSNTN--DISEA--AIASRTQRT----------------------------ESNQTKYYT 185 (508) Q Consensus 142 ~~~~i~~v----~a~~~~Pi~~d~~--~~~~~--~f~~~~~~~----------------------------~~~~~~~yt 185 (508) +.++|..+ |+.++|. .+++- .+..| +|+.++... +.......+ T Consensus 140 ~~~~i~~~~i~~~~~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vr 218 (725) T protein:vir:10 140 NNQVIRREPIHSACSHVIW-DSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQ 218 (725) T ss_pred CceeeeeeecccCHhHccc-CchhhccChhhhhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEE Confidence 23444433 4555542 11111 11222 122221110 000112233 Q ss_pred EEEEEEEeCCceEEEEEEEEecCCccccCcccccc-----cc-ccc--cC------------------CCcceeecCCCc Q lcl|Aclame:pro 186 LLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLS-----TL-PVY--KE------------------LAPQVTISGLQR 239 (508) Q Consensus 186 ~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~-----~~-~~~--~~------------------l~~~~~~~g~~~ 239 (508) .+|+|+-.. +.-.+|...+. .-|..+.+. .+ .+. .+ +.......+-+- T Consensus 219 v~E~~~r~~-----~~~~~~~~~d~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~ 292 (725) T protein:vir:10 219 IAEFYEVVE-----KKETAFIYQDP-VTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQL 292 (725) T ss_pred EEEEEEEEE-----EeeEEEEeccC-CCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCC Confidence 445543221 11112211110 001111100 00 000 00 000001111000 Q ss_pred ceEEEec-CCccccc--cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccce Q lcl|Aclame:pro 240 PLFAYFK-TPGANNI--NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNV 315 (508) Q Consensus 240 ~~f~~~~-~~~~n~~--~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 315 (508) .+..+|| +|+.-.. ..+.|++-+.+.++++..+.+|...|..++.+- ..+.+..++...+..... ..-..+... T Consensus 293 ~~~~~fP~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~--~~~~~~~~~ 370 (725) T protein:vir:10 293 IAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEH--MYDGNDDYP 370 (725) T ss_pred CCCCceeEEEEEeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHH--HHhccCCce Confidence 0011121 1222111 245677779999999999999999999999884 455666666655532111 001111111 Q ss_pred Eee---e--cCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 316 YVG---V--LSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 316 ~~~---~--~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) +.. + +.+.-....+..+++.--..++...++.....|...+|++...+|-.++ ..++.+|.++..........+ T Consensus 371 ~~~~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n-~~SG~ai~~rq~qg~~~l~~~ 449 (725) T protein:vir:10 371 YYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGG-QVAYDTVNQLNMRADLETYVF 449 (725) T ss_pred eeecccccccCcccccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCch-hhHHHHHHHHHHHHHHHHHHH Confidence 211 1 1111112234444433234577889999999999999999988887654 345666777766666666666 Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhc---cc----ccccccc-----------ccc-----cccCcceEEEEeCCCccCCHH Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELAN-AGA---LF----DDGKPLF-----------TLD-----SASQPLDIECHFDDGVFVNKD 446 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~-~~~---~~----~~~~~~~-----------~~~-----~~~~~~ei~i~f~d~i~~d~~ 446 (508) ...++.++..+-+.++.+-. .|. .+ ..+...+ +|. .....++|.|+=.-+.+.=++ T Consensus 450 ~Dnl~~~~~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~ 529 (725) T protein:vir:10 450 QDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQ 529 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHH Confidence 67777777777666666632 221 00 0110000 000 000124444443333333244 Q ss_pred HHHHHHHHHHhC-C-CCCH-HHHHHh-cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 447 KQLEEDAKVLAI-G-ALSK-QTFLQR-NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 447 ~e~~~~~~~~~~-G-i~s~-et~l~~-~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +.++.++++..+ + ..+. -..+.. .+..+=+-+++.+++|+...+......+.... ...+ T Consensus 530 ~~~~~l~qll~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e---~~q~ 592 (725) T protein:vir:10 530 QNRSEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPE---EQQW 592 (725) T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccCCccccc---hhHH Confidence 555555565532 1 1111 112221 11111133445556665543322111111000 0000 No 110 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.01 E-value=3.6e-09 Score=66.87 Aligned_cols=437 Identities=11% Similarity=0.091 Sum_probs=188.1 Q ss_pred CChHHHHHHHHHHHHHhhhhh--hhhHH-----h---hccccccCCHHHHHHHHHHHHHhcCCC-----ccccCccCCCc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVT--GSLSK-----I---TDDPRISIDPDEYVRIQTDLDYYSDKL-----QYIHYQASDGI 65 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~--~~~~~-----~---~~~~~i~~~~~~~~~i~~~~~~Y~g~~-----~~~~~~~~~~~ 65 (508) .+--+|+++. |+.-+.+.+. ..+.. . .-+..++++. -+..+.. .|.......+. T Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~~~~~~~~~~~~~~~~~~~~ 85 (532) T protein:vir:94 17 LQQAQRVDAK-RATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDY----------GLQTGRNGRNALSFVEATSWPGF 85 (532) T ss_pred hhhHhhhhhh-hhhhhhhhhhhhhhhccccccccccccccccccccc----------ccCcccccccccccccccccchH Confidence 3333333221 1110000000 00000 0 0000011110 0111110 01111111111 Q ss_pred cccccccccchHHHHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC Q lcl|Aclame:pro 66 KKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG 141 (508) Q Consensus 66 ~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~ 141 (508) ..-..+....+++.+|+..|+-++.+.++|++++++ ..-..|...++.-+++..+.+++..+-.+|++++.+-+++ T Consensus 86 ~l~a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~ 165 (532) T protein:vir:94 86 PTLALLAQLPEYRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKM 165 (532) T ss_pred HHHHHHHcCchhhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEecc Confidence 111112245789999999999999999999875432 2223566666666788899999999999999987776654 Q ss_pred CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEe------ecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCc Q lcl|Aclame:pro 142 NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRT------ESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGN 215 (508) Q Consensus 142 ~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~------~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~ 215 (508) ......+-++-..-|-.-..|.+.....+.++... .......|-+-++| .+. . |. T Consensus 166 ~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y--------~v~-------~----g~ 226 (532) T protein:vir:94 166 DGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSW--------IAT-------S----GK 226 (532) T ss_pred CCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeE--------EEc-------c----Ce Confidence 22211111111100100011122222222111100 00000011111111 010 0 11 Q ss_pred cccccccccccCCCcceeecCCCcceEEEecCCccccccCC-CcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 216 QVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIE-SPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV 294 (508) Q Consensus 216 ~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~-splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v 294 (508) +|.-+.+ +.+.|. |+++..... .-.|+|++..+.+.|..++.+......-+......++. T Consensus 227 ~iH~SRl---------i~f~g~----------~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k 287 (532) T protein:vir:94 227 KIHSSRI---------HTVVGR----------PVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLA 287 (532) T ss_pred eeccceE---------EEecCC----------CchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceee Confidence 1111110 111111 111111111 12499999999999999998776665544444444443 Q ss_pred ch--HHhcCCCCCC-----ccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-cccc Q lcl|Aclame:pro 295 QP--GMLRFDDEHK-----PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYS 366 (508) Q Consensus 295 ~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~ 366 (508) .. .++..++... ..+...+..+..+..+. +...+++++.+ +......++...+.|...+|++..- ||.. T Consensus 288 ~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~-~~e~~e~~~~~--lsgl~~~l~~~~~~iAaa~~IP~t~LfG~s 364 (532) T protein:vir:94 288 TDMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDK-GTEEIQQTNTP--LSGLDSLQAQSQEQMAAVSHIPLVKLLGIT 364 (532) T ss_pred echHHhhcchhHHHHHHHHHHHHhhcCCccceEEcC-CCceeEEEecc--cCCHHHHHHHHHHHHHhHhCCCeeeeecCC Confidence 21 2221111110 00111111111111111 11236666544 4556777888888898889987764 5655 Q ss_pred cccc-chHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC Q lcl|Aclame:pro 367 NDGV-KTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN 444 (508) Q Consensus 367 ~~~~-~TAtei~~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d 444 (508) .+|. .|+.+=... .+..++.+| ..++..|+.|+..+++.. . |. .+.+++|.|+.-...+ T Consensus 365 p~GlnstGe~D~~~---yyd~I~s~Qe~~l~p~le~l~~~l~~s~-------~------g~---~~~d~~~~f~pL~~~s 425 (532) T protein:vir:94 365 PNGLNASSDGEIRV---WYDFIAGYQATNLTPLMEWIIDLIQLSE-------Y------GQ---IDPGLAWEWSPLMELD 425 (532) T ss_pred cccccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c------CC---CCCCceEEeCCCCCCC Confidence 5555 444433333 456666665 557778888887765421 0 11 1236889999866666 Q ss_pred HHHHHH-------HHHHHHhCCCCCHHHHHHhc-----CCCCH-----H---HHHHHHHHHHHhccCC-CCCCcccccCC Q lcl|Aclame:pro 445 KDKQLE-------EDAKVLAIGALSKQTFLQRN-----YGMTD-----E---QAAEELAKIQSEAPTD-TFEGGRSAILN 503 (508) Q Consensus 445 ~~~e~~-------~~~~~~~~Gi~s~et~l~~~-----~~~~d-----e---ea~~e~~ri~~E~~~~-~~~~~~~~~~~ 503 (508) ..+.++ ...+++..|++|..+++... .++.. + +++.+.++.+.+.... ...+....+-+ T Consensus 426 ~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (532) T protein:vir:94 426 DKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQP 505 (532) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCC Confidence 555443 34667788999988776542 11111 0 1111111111111000 01011111222 Q ss_pred CCCCC Q lcl|Aclame:pro 504 GGDGE 508 (508) Q Consensus 504 ~~~g~ 508 (508) ++.+| T Consensus 506 ~~~~d 510 (532) T protein:vir:94 506 DSEDD 510 (532) T ss_pred CCCCC Confidence 22333 No 111 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=98.99 E-value=6.8e-09 Score=65.36 Aligned_cols=462 Identities=11% Similarity=0.049 Sum_probs=191.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) =-..+.+++.+ ++.+=.++ .++.+...|..||.+..+. ......|+ ..+..+.-... T Consensus 26 ~~~~~~l~~~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~gr----s~vv~~~v~~~ 82 (763) T protein:vir:95 26 ELSLQALKADL-----------------DAAKPSHT-AMMIKVKEWNDLMRIEGKA-KPPKVKGR----SQVQPKLVRRQ 82 (763) T ss_pred hHHHHHHHHHH-----------------Hhhhcchh-HHHHHHHHHHHhhhccccC-cccccCCC----ccccCHHHHHH Confidence 11222222222 11111223 3466667788876555432 12223332 22333332222 Q ss_pred HHHH----HHhhhcCcceEeeC----CcH----HHHHHHHHHHH-hhhHHHHHHHHHHHHhhcCCEEEEEEEeC------ Q lcl|Aclame:pro 81 ARRI----ASVVFNEKAEIHVK----DNN----EADKFLNDVLE-DNDFKNKFEEALEKGVALGGFAMRPYIDG------ 141 (508) Q Consensus 81 v~~~----A~ll~~e~~~i~~~----~~~----~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~~~~~d~------ 141 (508) |+-. .+-+++-+--|.+. ++. ....+++-++. .|+-...+..++..|+..|.+++|+||+. T Consensus 83 ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~~~gv~k~~W~~~~~~~~ 162 (763) T protein:vir:95 83 AEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDDGTGIVRVGWNREIRKEK 162 (763) T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhcCcceEEEeeeeeeeeee Confidence 3222 22223332223321 111 22334444333 45555678899999999999999999951 Q ss_pred -------------------------------------------------------------------------CeeEEEE Q lcl|Aclame:pro 142 -------------------------------------------------------------------------NHIKIAW 148 (508) Q Consensus 142 -------------------------------------------------------------------------~~~~i~~ 148 (508) ++++|+. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~ie~ 242 (763) T protein:vir:95 163 QEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGTTTTEVEVPLANHPTVEM 242 (763) T ss_pred eeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccceeEEEEEEecCceEEEe Confidence 2346777 Q ss_pred EcCCeEEEEEEcC-CCeEEEEEEEE-EEEeec---CCcEEEEEEEE-----EEEe----------------CCceEEE-E Q lcl|Aclame:pro 149 VRADQFYPLQSNT-NDISEAAIASR-TQRTES---NQTKYYTLLEF-----HQWQ----------------DNGSYQI-T 201 (508) Q Consensus 149 v~a~~~~Pi~~d~-~~~~~~~f~~~-~~~~~~---~~~~~yt~lE~-----h~~~----------------~~g~~~I-~ 201 (508) |+|..|++ ..+. .++..+-|+.+ +..... ..+..|..++- +... +.+.-.| . T Consensus 243 V~p~d~~i-Dp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~V~v 321 (763) T protein:vir:95 243 LNPENIII-DPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTTPQEFQISDPMRKRVVA 321 (763) T ss_pred ecHHHhee-cCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccccchhhccCCCcccceEEE Confidence 88888874 2221 12444444321 111100 00001111000 0000 0000001 1 Q ss_pred EEEEecCCccccCcccccccccccc--CCCcceee------cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 202 NELYKSDSPDIVGNQVPLSTLPVYK--ELAPQVTI------SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 202 ~~ly~~~~~~~lG~~v~l~~~~~~~--~l~~~~~~------~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) ++.|...+.+ |..+ .++- -+...+.. ....+.||+.+++ + ....+.+|.|+++.+++.++. T Consensus 322 ~E~y~~~d~~--gdg~-----~~~~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~-~---p~~~~~~G~gi~~~~~d~Qr~ 390 (763) T protein:vir:95 322 YEYWGFWDIE--GNGV-----LEPIVATWIGSTLIRLEKNPYPDGKLPFVLIPY-M---PVKRDMYGEPDAELLGDNQAV 390 (763) T ss_pred EEeeeeeccC--Ccce-----eEEEEEEEEcCeeeecccccccCCCcCEEEecc-e---eecCcccCCchHHHhhHHHHH Confidence 1222211100 0000 0000 00000000 0112334554331 1 123567899999999999999 Q ss_pred HHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee-ccCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 INDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT-TPIRTVQYKDAIDHFIKE 351 (508) Q Consensus 274 lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~dir~e~~~~~l~~~l~~ 351 (508) +|..+++.++.+. .+.+++.|+++.+.... ...+.++..+. ++.+......+...+ |.+ -.+....++.+-.. T Consensus 391 ~N~~~~~~~d~l~~~~~~~~~v~~gav~~~d--~~~~~pg~v~~--v~~g~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~ 465 (763) T protein:vir:95 391 LGAVMRGMIDLLGRSANGQRGMPKGMLDALN--SRRYREGEDYE--YNPTQNPAQMIIEHKFPEL-PQSALTMATLQNQE 465 (763) T ss_pred HHHHHHHHHHHHHhhcCCcEEeecccccchh--hhcccCCceEE--eeCCCChhhhcccccCCCC-cchHHHHHHHHHHH Confidence 9999999999885 67888999877764322 11122221111 111111111222222 222 23444555555556 Q ss_pred HHHHhCCCchhccccccc-cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc------ Q lcl|Aclame:pro 352 FEVQIGLSTGTFSYSNDG-VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTL------ 424 (508) Q Consensus 352 i~~~~g~s~~~~~~~~~~-~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~------ 424 (508) +...+|++...-|.++.+ ..||+++...-+..-.....+.+.|..+++++.+.++.+...+---. -.....| T Consensus 466 ~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~~d~~-rviRI~g~e~v~v 544 (763) T protein:vir:95 466 AESLTGVKAFAGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLAEH-EVVRITNEEFVTI 544 (763) T ss_pred HHHhhCcchhhcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-cEEEEeCCccccc Confidence 677788887776655433 46788777665554555556677787888999998888865542111 0111111 Q ss_pred --ccccCcceEEEEeCCCccCCHH-HHHHHHHHHH-hCC-CCCHHH---HHHhcCCCCHHHHHHHHHHHHHhccCCCCCC Q lcl|Aclame:pro 425 --DSASQPLDIECHFDDGVFVNKD-KQLEEDAKVL-AIG-ALSKQT---FLQRNYGMTDEQAAEELAKIQSEAPTDTFEG 496 (508) Q Consensus 425 --~~~~~~~ei~i~f~d~i~~d~~-~e~~~~~~~~-~~G-i~s~et---~l~~~~~~~deea~~e~~ri~~E~~~~~~~~ 496 (508) ......++|.+.-+ . .... +..++..++. ..| .++... .+...-...+ ..+.++.++.-++..++.. T Consensus 545 ~~~~~~~~~DV~V~~~--~-as~~~q~~~~l~~ll~~l~~~~~~~~~~~il~~~~d~~~--~~~~~~~lr~~q~~~d~~~ 619 (763) T protein:vir:95 545 KREDLKGNFDLEVDIS--T-AEVDNQKSQDLGFMLQTIGPNVDQQITLNILAEIADLKR--MPKLAHDLRTWQPQPDPVQ 619 (763) T ss_pred cHHHhcCCcceEEecc--c-chHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHhhhc--hhhhHHHHHhcCCCccchh Confidence 11111233443322 1 2222 2222223222 111 222111 1110000100 1111222222222111100 Q ss_pred ccc-cc-CCCCCCC Q lcl|Aclame:pro 497 GRS-AI-LNGGDGE 508 (508) Q Consensus 497 ~~~-~~-~~~~~g~ 508 (508) .+- .. ..-.+.+ T Consensus 620 q~qaqle~~~~q~e 633 (763) T protein:vir:95 620 EQLKQLAVEKAQLE 633 (763) T ss_pred hhHHHHHHHHHHHH Confidence 000 00 0000000 No 112 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=98.97 E-value=8.9e-09 Score=64.72 Aligned_cols=429 Identities=10% Similarity=0.089 Sum_probs=185.9 Q ss_pred HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 7 IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIAS 86 (508) Q Consensus 7 ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ 86 (508) ||.-+++...+ +..++..-...|+.+|.---|.+-....+.......++-=+-+...++.+|+ T Consensus 1 m~~~~~~r~~~-----------------l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa 63 (555) T protein:vir:17 1 MKHSAQAKYMM-----------------LRADREDYLDSGRQSARLTLPYILTDEGHVQGGYLPTPWQSVGSKGVNVLAS 63 (555) T ss_pred ChhHHHHHHHH-----------------HHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHH Confidence 23333222222 1223444566777776544342221111111222222333456666666666 Q ss_pred hhhcC--c-----ceEeeCCcH--------HHHH-----------HHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 87 VVFNE--K-----AEIHVKDNN--------EADK-----------FLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 87 ll~~e--~-----~~i~~~~~~--------~~~~-----------~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) .|++- | .++.+.+.+ .... .+...+..++|...+.++..+....|.+.+ |.+ T Consensus 64 ~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--y~~ 141 (555) T protein:vir:17 64 KLMLSLFPVNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALL--YQG 141 (555) T ss_pred HHHHhhcCCCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--Eec Confidence 66543 1 233333211 1122 233345568899999999999999999874 667 Q ss_pred CCeeEEEEEcCCeEEEEEEcC-CCeEEEEEEEEEEEee----cC-----------------------------------C Q lcl|Aclame:pro 141 GNHIKIAWVRADQFYPLQSNT-NDISEAAIASRTQRTE----SN-----------------------------------Q 180 (508) Q Consensus 141 ~~~~~i~~v~a~~~~Pi~~d~-~~~~~~~f~~~~~~~~----~~-----------------------------------~ 180 (508) .+.+ .++|-.+++ +..|. |++..++...++.... -+ . T Consensus 142 ~~~~--~~~pl~~y~-v~~d~~G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 218 (555) T protein:vir:17 142 KKNL--KLYPLDRFV-VSRDGEGNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSND 218 (555) T ss_pred CCce--eEEEcCeEE-EeeCCCcCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcc Confidence 6654 456667755 44554 4454433322221100 00 0 Q ss_pred cEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccc--ccccccccCCCcceeecCCCcceEEEecCCccccccCCCc Q lcl|Aclame:pro 181 TKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVP--LSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESP 258 (508) Q Consensus 181 ~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~--l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~sp 258 (508) ...||+... ..+.+. +|..-+ |..++ +.+ .|...-||..++ =+...++. T Consensus 219 ~~v~t~~~~----~~~~~~----~~~e~~----~~~v~~~l~e-------------~g~~e~P~i~~R----w~~~~ge~ 269 (555) T protein:vir:17 219 ALVYTYVCR----KDGQVK----WHQECD----GKVIPGSNSS-------------APYTHNPWIPLR----FNIVDGEA 269 (555) T ss_pred eeEeecccc----cCCeeE----EEEecC----ceeccccccc-------------cCcccCCeeeee----eeecCCCc Confidence 001111110 011111 111101 11111 111 111111222211 12334678 Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeecc-- Q lcl|Aclame:pro 259 LGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTP-- 335 (508) Q Consensus 259 lG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-- 335 (508) +|+|-...+.+-++.|+..--...... ...++...|+++.+.... ...+.....+. ... ...++.++.. T Consensus 270 YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~lv~~~g~~~~~---~l~~~~~g~v~--~g~---~~~v~~~~~~~~ 341 (555) T protein:vir:17 270 YGRGRVEEFMGDLKSLEALSQAMVEGSAASAKVVFMVSPSATTKPQ---NLALAANGAII--QGR---PDDVSVVQANKA 341 (555) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccccCcc---eeecCCCceee--cCC---cccceeeecccc Confidence 999999999999999998765565554 467777777654321110 00111111221 111 1123333311 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 336 IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGAL 414 (508) Q Consensus 336 ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~ 414 (508) .+.....+.++.+...|....-+. +...+...|||||....+.......-.-..+ ..-|..||.-++++....++ T Consensus 342 ~~~~~~~~~i~~~~~~I~~aFm~~----~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~ 417 (555) T protein:vir:17 342 ADFRTVLEMIQKLEQRISDAFLML----QVRQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRK 417 (555) T ss_pred chhhHHHHHHHHHHHHHHHHHhhc----CCCCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 123333444444444443322111 1223455799999999999998888766555 46677788888888766555 Q ss_pred ccccccccccccccCcceEEEEeCCCcc-CCHHHHHHHHHHHHh--CCC---------CCHHHHH---HhcCCC------ Q lcl|Aclame:pro 415 FDDGKPLFTLDSASQPLDIECHFDDGVF-VNKDKQLEEDAKVLA--IGA---------LSKQTFL---QRNYGM------ 473 (508) Q Consensus 415 ~~~~~~~~~~~~~~~~~ei~i~f~d~i~-~d~~~e~~~~~~~~~--~Gi---------~s~et~l---~~~~~~------ 473 (508) .+..- ....++++. -++. .-+.++++...+..+ +.+ +....++ ..-.|+ T Consensus 418 lP~~p--------~~~v~~~i~--~~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~iv 487 (555) T protein:vir:17 418 LPQLP--------KDLVQPTVV--AGLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLI 487 (555) T ss_pred CCCCC--------Hhhhcccee--ehHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhc Confidence 44221 111122222 1111 112333333322210 011 2222222 333555 Q ss_pred -CHHHHHHHHHHHHHhcc--------CCC----------CCCcccccC---------CCCCCC Q lcl|Aclame:pro 474 -TDEQAAEELAKIQSEAP--------TDT----------FEGGRSAIL---------NGGDGE 508 (508) Q Consensus 474 -~deea~~e~~ri~~E~~--------~~~----------~~~~~~~~~---------~~~~g~ 508 (508) ++||++++.+..+++++ ... ......... .+..-| T Consensus 488 rs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~ 550 (555) T protein:vir:17 488 NSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQDAGAAESETSSAE 550 (555) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccchhhhhHHHHHHhhcCCcc Confidence 55555544322221110 000 000000000 001111 No 113 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=98.94 E-value=5.3e-09 Score=65.95 Aligned_cols=479 Identities=11% Similarity=0.030 Sum_probs=209.4 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHH--HHhcCCCcccc----CccCCCccccccccccch Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDL--DYYSDKLQYIH----YQASDGIKKKRLKNTINM 76 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~--~~Y~g~~~~~~----~~~~~~~~~~~~~~~~n~ 76 (508) |=++..+.+.+...++ ... +....+.+.+..... .||.|. .|=. .....+.-..+..++.|. T Consensus 1 ma~~~~~~~~~~~~r~------~~~-----~~~~~~~r~~~~~d~~f~~y~G~-Qw~~~~~~~l~~~~q~~~rP~~~~N~ 68 (708) T protein:vir:17 1 MAETLEKKHERIMLRF------DRA-----YSPQQEVREKCIEATRFARVPGG-QWEGATAAGTKLDEQFEKYPKFEINK 68 (708) T ss_pred CchhHHHHHHHHHHHH------HHH-----HhhhHHHHHHHHHHHHhhccCCC-CCCHHHHHHHHhhhhhcCCCceEEcc Confidence 4444444443332221 111 122344455555554 467775 2211 111122223456678899 Q ss_pred HHHHHHHHHHhhhcCcceEeeCCc-----HH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe------- Q lcl|Aclame:pro 77 AKTAARRIASVVFNEKAEIHVKDN-----NE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID------- 140 (508) Q Consensus 77 ~~~iv~~~A~ll~~e~~~i~~~~~-----~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d------- 140 (508) -+.+|+...++--...+.+.+... .. ++..+..+.+.++.......+...+...|-+|+..+.| T Consensus 69 i~~~i~~v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~ 148 (708) T protein:vir:17 69 VATELNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDP 148 (708) T ss_pred hHHHHHHHHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCC Confidence 999999999887777777765321 11 23344555567788888999999999999999988642 Q ss_pred ---CCeeEEEEE--cCCeEEEEEEcCC--CeEEEE--EEEEEEE-------------------------eecCCcEEEEE Q lcl|Aclame:pro 141 ---GNHIKIAWV--RADQFYPLQSNTN--DISEAA--IASRTQR-------------------------TESNQTKYYTL 186 (508) Q Consensus 141 ---~~~~~i~~v--~a~~~~Pi~~d~~--~~~~~~--f~~~~~~-------------------------~~~~~~~~yt~ 186 (508) ..++.|..+ |+..++. ..++. .+..|- |..++.. .+.-..+..+. T Consensus 149 ~~~~~~i~i~~~~~~~~~v~~-Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~vrv 227 (708) T protein:vir:17 149 MDDRQRIAIEPIYDPSRSVWF-DPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVIYI 227 (708) T ss_pred CCCccccceEeeccchhheec-CccccccChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCeEEE Confidence 124555543 4556651 11111 222231 2111110 00001123334 Q ss_pred EEEEEEe-CCceEE-EEE------EEEecCCcccc-------Cccc----ccccccc-ccCCCcceeecCCCcceEEEec Q lcl|Aclame:pro 187 LEFHQWQ-DNGSYQ-ITN------ELYKSDSPDIV-------GNQV----PLSTLPV-YKELAPQVTISGLQRPLFAYFK 246 (508) Q Consensus 187 lE~h~~~-~~g~~~-I~~------~ly~~~~~~~l-------G~~v----~l~~~~~-~~~l~~~~~~~g~~~~~f~~~~ 246 (508) .|+|.-. ...++. ..+ ..|.+.....+ |... +...... |.-+.......+-...++.+|| T Consensus 228 ~e~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~fP 307 (708) T protein:vir:17 228 AKYYEVRKESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIP 307 (708) T ss_pred EEEEEEeeeeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCccc Confidence 4544211 000000 000 11221111110 1000 0000000 0000011111121111223333 Q ss_pred -CCcccccc--CCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecC- Q lcl|Aclame:pro 247 -TPGANNIN--IESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLS- 321 (508) Q Consensus 247 -~~~~n~~~--~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~- 321 (508) +|+.-... .+.|.--+.+.++++..+.+|...|.+.+.+- .++...+++.+.+..-......+......|..... T Consensus 308 ~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~~~~~~~~ 387 (708) T protein:vir:17 308 LIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLREV 387 (708) T ss_pred eEEEecccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhhhhhhhcc Confidence 13321111 23332236788999999999999999999874 45555666666653211110011011111110000 Q ss_pred CC------CCCCcceEe-eccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 322 DD------NNGLGVKDM-TTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 322 ~~------~~~~~i~~~-~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) .+ .+...+..+ .++++ .+++..++.....|...+|++....|-.+ ..++.+|.+...............+ T Consensus 388 ~~~~g~v~~~a~~~~~~~~~~~~-~~~~~llq~~~~~i~~~tGi~d~~~G~~s--n~SG~Ai~~rq~qg~~~~~~~~Dnl 464 (708) T protein:vir:17 388 RDKYGNIIAGATPAGYTQPAVMN-QALAALLQQTSADIQEVTGGSQAMQQMPS--NIAQETVNNLMNRADMASFIYLDNM 464 (708) T ss_pred CCcccccccccCCcccCCCcccc-HHHHHHHHHHHHHHHHhcCCChHHccCcc--chHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 001112222 34454 67888999999999999999999888533 2467777777666666665666666 Q ss_pred HHHHHHHHHHHHHHHhhh----ccc---c-ccc-----------cccccc------cccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAG----ALF---D-DGK-----------PLFTLD------SASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~----~~~---~-~~~-----------~~~~~~------~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) +.+.+..-+.++.+...+ .++ . ++. ...+|. .....++|.|+=..+.+.-+++.. T Consensus 465 ~~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~~~~ 544 (708) T protein:vir:17 465 AKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDATV 544 (708) T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHHHHH Confidence 666666666665554322 111 0 000 000000 000122333332222223344445 Q ss_pred HHHHHHHhCCC-CCHHH------HHHh--cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 450 EEDAKVLAIGA-LSKQT------FLQR--NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 450 ~~~~~~~~~Gi-~s~et------~l~~--~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +.++++..+.. ....+ .+.. +|+ +++.+++|+...+......+.. ..+ T Consensus 545 ~~l~qll~~~~~~~~~~~~~~~l~l~~~D~p~-----~~ei~e~ir~~~~~~~~~~~~~------~e~ 601 (708) T protein:vir:17 545 SVLTNVLSSMLPADPMRPAIQGIILDNIDGEG-----LDDFKEYNRNQLLISGIAKPRN------EKE 601 (708) T ss_pred HHHHHHHHhcCCccchhHHHHHHHHHhcCCCC-----hHHHHHHHHHHhhccccccCcc------hhh Confidence 55555543321 11111 2222 233 2333444443332211111100 111 No 114 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.90 E-value=1.8e-08 Score=63.04 Aligned_cols=454 Identities=11% Similarity=0.065 Sum_probs=195.9 Q ss_pred HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 7 IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIAS 86 (508) Q Consensus 7 ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ 86 (508) ||..+++...++ ..++..-...|+.+|.---|.+-.....+......++-=+-+...++.+|+ T Consensus 1 mk~~a~~r~~~l-----------------~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dstg~~a~~~Laa 63 (542) T protein:vir:78 1 MKGLAQARYSAM-----------------RADREDFLDMARRCAALTLPYLLTEDGHASGGRLQQPYQSLGSKGVNALSS 63 (542) T ss_pred ChhHHHHHHHHH-----------------HHHhhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHHHHHHHH Confidence 344443333322 223444566777776544332221111122222222222455666666666 Q ss_pred hhhcC--c-----ceEeeCCc-------------HHHHH-------HHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEE Q lcl|Aclame:pro 87 VVFNE--K-----AEIHVKDN-------------NEADK-------FLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYI 139 (508) Q Consensus 87 ll~~e--~-----~~i~~~~~-------------~~~~~-------~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~ 139 (508) .|++- | .++.+++. +..+. .+...+..++|...+.++..+....|.+.+ |. T Consensus 64 ~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~ 141 (542) T protein:vir:78 64 KLMLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLV--FA 141 (542) T ss_pred HHHHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE--Ee Confidence 66543 1 23333221 11222 344567778999999999999999999864 56 Q ss_pred eCCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEee-----cCCcEEE-EEEEEEEEeCCceEEEEEEEEecCCcccc Q lcl|Aclame:pro 140 DGNHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTE-----SNQTKYY-TLLEFHQWQDNGSYQITNELYKSDSPDIV 213 (508) Q Consensus 140 d~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~-----~~~~~~y-t~lE~h~~~~~g~~~I~~~ly~~~~~~~l 213 (508) +.+. +..+|-.+++ +..|.......+|........ -.....- ..-..-.-+.+-.+.|.+..+...+.+ + T Consensus 142 ~~~~--~~~~pl~~y~-v~~d~~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~-~ 217 (542) T protein:vir:78 142 GKKT--LKVYPLDRYV-IERDGDGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAE-V 217 (542) T ss_pred cCCC--ceEEecceeE-EeeCCCCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCc-c Confidence 6655 4567777755 445544433444433211100 0000000 000000000011223333333222111 1 Q ss_pred Cccccccccccc---cCCCcce-----eecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 GNQVPLSTLPVY---KELAPQV-----TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI 285 (508) Q Consensus 214 G~~v~l~~~~~~---~~l~~~~-----~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~ 285 (508) .+.+.... +-| ..+.... ...|...-+|..++ =+...++.+|+|-...+.+-++.|+..--...... T Consensus 218 ~~~~~~~~-~~~s~~~e~~g~~v~~~~~e~g~~~~P~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~ 292 (542) T protein:vir:78 218 FTCCKLVD-GQHRWHQECDGKEIKGSRSSSPLKHSPWLPLR----FNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGS 292 (542) T ss_pred ccccccCC-CeEEEEEEeccccccccccccccccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 11110000 000 0000000 00111111222111 12234678999999999999999998766665554 Q ss_pred -HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcc Q lcl|Aclame:pro 286 -RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) Q Consensus 286 -~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 364 (508) ...++...||++.+.. + ....+.....+.. .. .++.++..+....+.....+.++.+.+.|....-+.. T Consensus 293 ~~a~~pp~lv~~~g~~~-~--~~~~~~~~g~iv~--g~-~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~~~---- 362 (542) T protein:vir:78 293 AAAAKVVFMVSPSATTK-P--QSLARAGTGAIIQ--GR-AEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLILN---- 362 (542) T ss_pred HHHhcCceeeccccccc-h--hhcccCCCceeec--CC-ccceeeeecccccchhHHHHHHHHHHHHHHHHhcccc---- Confidence 4667777776543211 0 0111222222221 11 1111122222222344455666666666654432321 Q ss_pred ccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccC Q lcl|Aclame:pro 365 YSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFV 443 (508) Q Consensus 365 ~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~ 443 (508) ..++...|||||....+...+...-.-..+ ..-|..||.-++.+....++.+.. ++.-+.+++--++.. T Consensus 363 ~~d~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~----------p~~lv~~~~~s~La~ 432 (542) T protein:vir:78 363 VRQSERTTATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSL----------PKGLVMPTVVAGLGG 432 (542) T ss_pred cCCcccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----------chhceeeeeechHHH Confidence 123344799999999999888888755554 455666777777776554444321 112245555444422 Q ss_pred C-HHHHH---HHHHHHHhC--C------CCCHHHHH---HhcCCCC-------HHHHHHHHHHHHHhccCC--------- Q lcl|Aclame:pro 444 N-KDKQL---EEDAKVLAI--G------ALSKQTFL---QRNYGMT-------DEQAAEELAKIQSEAPTD--------- 492 (508) Q Consensus 444 d-~~~e~---~~~~~~~~~--G------i~s~et~l---~~~~~~~-------deea~~e~~ri~~E~~~~--------- 492 (508) - +..++ .+..+.++. | .+....++ ....|++ +|+++++-++.++.+... T Consensus 433 ~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~ 512 (542) T protein:vir:78 433 VGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQL 512 (542) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhc Confidence 1 11111 222233322 1 01122222 2235664 355555444433222110 Q ss_pred --CCC--Ccccc--------cCCCCCCC Q lcl|Aclame:pro 493 --TFE--GGRSA--------ILNGGDGE 508 (508) Q Consensus 493 --~~~--~~~~~--------~~~~~~g~ 508 (508) .+. +.... +.+..-|| T Consensus 513 a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 540 (542) T protein:vir:78 513 AKSPIGEKMMQQINAPGQEAPAGPQTGE 540 (542) T ss_pred cccccccchhhhcCCCCcCCCCCCcccc Confidence 000 00001 11111122 No 115 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.84 E-value=3.1e-08 Score=61.71 Aligned_cols=448 Identities=13% Similarity=0.110 Sum_probs=197.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |-- +..| . .+++++-.+ .+..++..-...|+.+|.---|.+-.....+....+.++-=+-+... T Consensus 1 ~~~----~~~~----~----~~~~~~r~~----~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a 64 (522) T protein:vir:94 1 MAE----REGF----A----AEGAKAVYD----RLKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPWQAVGARC 64 (522) T ss_pred Ccc----cchh----h----HHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHH Confidence 221 1111 0 111111111 11223444466677777544443222222222222233333556666 Q ss_pred HHHHHHhhhcC--c--c--eEeeCC------------cHHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 81 ARRIASVVFNE--K--A--EIHVKD------------NNEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 81 v~~~A~ll~~e--~--~--~i~~~~------------~~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) ++.+|+.|++- | + ++.+.+ ....+++ +...+..++|...+.++..+....|.+.+ T Consensus 65 ~~~Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l 144 (522) T protein:vir:94 65 LNNLAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLL 144 (522) T ss_pred HHHHHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeE Confidence 66666666543 2 2 222221 1122333 33456668899999999999999999876 Q ss_pred EEEEeC-C-eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe----------ecCCcEEEEEEEEEE--EeCCceEEE Q lcl|Aclame:pro 136 RPYIDG-N-HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT----------ESNQTKYYTLLEFHQ--WQDNGSYQI 200 (508) Q Consensus 136 ~~~~d~-~-~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~----------~~~~~~~yt~lE~h~--~~~~g~~~I 200 (508) .+--+. + .+.+.++|-.+++ +..| +|++..++...++... ..+..+.+..+++++ ..+.++|. T Consensus 145 ~~~~~~~~~~~~~~~~pl~~y~-v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~- 222 (522) T protein:vir:94 145 YIPEPEQGTYSPMRMYRLVSYV-VQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYL- 222 (522) T ss_pred eeeccCCCceeeEEEEEcceEE-EeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCcee- Confidence 432222 2 3457888888866 4445 4555555443332110 001111122222221 11122222 Q ss_pred EEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 201 TNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQ 280 (508) Q Consensus 201 ~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~ 280 (508) .|..-. |..++.... .| .+...|-..+.|. ...++.+|+|-...+.+-++.|+..--. T Consensus 223 ---~~~~~~----g~~~~~~~~-~~-------~~~e~P~~~~Rw~-------~~~ge~YGrgp~~~~l~D~k~L~~l~~~ 280 (522) T protein:vir:94 223 ---RYEEVE----GIEVTGTDG-SY-------PLTACPYIPVRMV-------RLDGEDYGRSYCEEYLGDLNSLETITEA 280 (522) T ss_pred ---EEeecc----CceecccCC-CC-------ccccCCceeeeee-------ecCCCccccchHHHHHHHHHHHHHHHHH Confidence 222111 222222110 00 0111121122222 2346789999999999999999987766 Q ss_pred HHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 281 FIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFIKEFEVQIG 357 (508) Q Consensus 281 ~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l~~i~~~~g 357 (508) ..... ...++.+.||++.+..-. ...+.....++. ... + .++.++ ..-+.......++.+.+.|....- T Consensus 281 ~l~~~~~~~~p~~~v~~~g~~~~~---~~~~~~~g~~v~--g~~-~--~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~ 352 (522) T protein:vir:94 281 ITKMAKVASKVVGLVNPNGITQPR---RLNKAATGEFVA--GRV-E--DINFLQLTKGQDFTIAKSVADAIEQRLGWAFL 352 (522) T ss_pred HHHHHHHHhCCceeecccccccch---heeccCCceeec--CCc-c--cceeeecccccchhHHHHHHHHHHHHHHHHHh Confidence 66654 567888888654321110 011111122221 111 1 133222 112344455666666666654442 Q ss_pred CCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEE Q lcl|Aclame:pro 358 LSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECH 436 (508) Q Consensus 358 ~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~ 436 (508) +. .++..++...|||||....+...+...-.-.. -..-|..|+.-++.+....++.+.. ++..+.++ T Consensus 353 ~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~----------p~~~v~v~ 420 (522) T protein:vir:94 353 LN--SAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDL----------PKEAVEPT 420 (522) T ss_pred hh--hhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----------CcccEEee Confidence 22 23333445689999999999988888764433 3445566776666665444433211 11224555 Q ss_pred eCCCccCC-HHHHHHHHHHHHh-CCCCCH---------HHH---HHhcCCCC-------HHHHHHHHHHHHHhcc---C- Q lcl|Aclame:pro 437 FDDGVFVN-KDKQLEEDAKVLA-IGALSK---------QTF---LQRNYGMT-------DEQAAEELAKIQSEAP---T- 491 (508) Q Consensus 437 f~d~i~~d-~~~e~~~~~~~~~-~Gi~s~---------et~---l~~~~~~~-------deea~~e~~ri~~E~~---~- 491 (508) +--++..- +...++...+... ...+++ ..+ +....|++ ++|++++.++..+.+. . T Consensus 421 ~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~ 500 (522) T protein:vir:94 421 VSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGA 500 (522) T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHH Confidence 44333221 1222222222111 011222 221 22345552 3455555544322211 1 Q ss_pred CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 ~~~~~~~~~~~~~~~g~ 508 (508) .....+...+.+..-|+ T Consensus 501 ~~~~~~~~a~~~~~~~~ 517 (522) T protein:vir:94 501 SAAGANMGAAVGQGAGE 517 (522) T ss_pred HHHHHHhhhhhhcccch Confidence 11111121222222222 No 116 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=98.80 E-value=4.3e-08 Score=60.99 Aligned_cols=479 Identities=11% Similarity=0.024 Sum_probs=216.1 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC-----CCccccccccccchH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-----DGIKKKRLKNTINMA 77 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-----~~~~~~~~~~~~n~~ 77 (508) |=++-+.++++...++ ... +.-..+-+.+..+..+||.+....+..... .+.-..+..++.|.- T Consensus 1 m~e~~~~~~~~~~~~~------~~~-----~~~~~~~r~~~~~d~~f~~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i 69 (706) T protein:vir:10 1 MAESRQKQHERVMLRF------DRA-----WSPQQVVREKCIEATRFVRVPGGQWEGATVAGTKLDEQFEKYPKFEINKV 69 (706) T ss_pred CCcchHHHHHHHHHHH------HHH-----HHHHHHHHHHHHHHHHhhccCCccCCHHHHHHHHhhhhhcCCCceEecch Confidence 4445555554444432 111 111345556667777888644332322111 111223456788999 Q ss_pred HHHHHHHHHhhhcCcceEeeCC----cH-H----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---C---- Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKD----NN-E----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---G---- 141 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~----~~-~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---~---- 141 (508) +.+|+...++.-...+.+.+.. ++ . ++..+..+.+.++.......+...+...|-+|+....| + T Consensus 70 ~~~v~~v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~ 149 (706) T protein:vir:10 70 ATELNRIISEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPM 149 (706) T ss_pred HHHHHHHhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCC Confidence 9999999999888877777531 11 2 23344555567888889999999999999999998754 1 Q ss_pred ---CeeEEEEEc-C-CeEEEEEEcC--CCeEEE--EEEEEEEEee------------------------cCCcEEEEEEE Q lcl|Aclame:pro 142 ---NHIKIAWVR-A-DQFYPLQSNT--NDISEA--AIASRTQRTE------------------------SNQTKYYTLLE 188 (508) Q Consensus 142 ---~~~~i~~v~-a-~~~~Pi~~d~--~~~~~~--~f~~~~~~~~------------------------~~~~~~yt~lE 188 (508) +.++|+.+. | +.|+. ...+ -+...| +|..++...+ ..........| T Consensus 150 ~~~~~i~i~~v~~p~~~v~~-Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~~e 228 (706) T protein:vir:10 150 DERQRIAVEPIYDPARSVWF-DPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYIAK 228 (706) T ss_pred CCCccceeeeeccchhceec-CchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCcceecc Confidence 245565542 3 34441 1111 123332 3332221100 00011112233 Q ss_pred EEEEeCCceEEEEEEEEecCCcc--------ccCcccc-cc--cccc------------ccCCCcceeecCCCcc-eEEE Q lcl|Aclame:pro 189 FHQWQDNGSYQITNELYKSDSPD--------IVGNQVP-LS--TLPV------------YKELAPQVTISGLQRP-LFAY 244 (508) Q Consensus 189 ~h~~~~~g~~~I~~~ly~~~~~~--------~lG~~v~-l~--~~~~------------~~~l~~~~~~~g~~~~-~f~~ 244 (508) +|+..... ++-..|+..... .+..... +. .+.. |.-+.+.....+ +.| +... T Consensus 229 yy~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~-~~p~~~~~ 304 (706) T protein:vir:10 229 YYEVRKES---VDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEK-PRRIPGEH 304 (706) T ss_pred ccccccee---EEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeecccccccc-CCCCCCCc Confidence 32211100 000011110000 0000000 00 0000 000111111111 111 1111 Q ss_pred ec-CCcccccc--CCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceee-echHHhcCCCCCCccCCcccceEeee- Q lcl|Aclame:pro 245 FK-TPGANNIN--IESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIA-VQPGMLRFDDEHKPTFDTEQNVYVGV- 319 (508) Q Consensus 245 ~~-~~~~n~~~--~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~-v~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (508) || +|+.-... ..++..-+.+.++++..+.+|...|.+.+.+-.+..... ++..-++.-...-........-|..+ T Consensus 305 ~P~vP~~g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 384 (706) T protein:vir:10 305 IPLIPVYGKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPIVDMEQIRGLEQHWEGRNRKRPAFLPLR 384 (706) T ss_pred cceEEEeeccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHhhhcccccccchhcc Confidence 21 12211111 234444577889999999999999999998743333222 21111100000000000000001101 Q ss_pred cCCCCCC------CcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 320 LSDDNNG------LGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 320 ~~~~~~~------~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~ 393 (508) ..+..++ ..+..+++.--..++.+.++.....|...+|++...+|-.++ .++.+|.++..........+... T Consensus 385 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~sn--~SG~Ai~~rq~qg~~~~~~~~Dn 462 (706) T protein:vir:10 385 TVTDKTGNVVAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMPSN--VARETVNSLLNRSDMASFIYLDN 462 (706) T ss_pred cccCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCccc--hHHHHHHHHHHHHHHHHHHHHHH Confidence 1111111 112333332234567888888888999999999998886443 47788888877777666677777 Q ss_pred HHHHHHHHHHHHHHHHhhh----cccc----cccc-----------cc------ccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAG----ALFD----DGKP-----------LF------TLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~----~~~~----~~~~-----------~~------~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) ++.+++..-+.+|.+...+ ..+- ++.. .. ........++|+|+=..+.+.-+++. T Consensus 463 l~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~t~r~~~ 542 (706) T protein:vir:10 463 MAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYSARRDAT 542 (706) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcchHHHHH Confidence 7777777766666654321 1100 0000 00 00111122345555444445556777 Q ss_pred HHHHHHHHhCCC-CCHHH-----HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 449 LEEDAKVLAIGA-LSKQT-----FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 449 ~~~~~~~~~~Gi-~s~et-----~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+.++++..++. ....+ .+..+..+.- +++.+++++...+......+ ...+ T Consensus 543 ~~~m~el~~~~~p~~~~~~~l~~~~~~~~d~p~--~~e~~e~irk~~~~q~~~~~-------~~~~ 599 (706) T protein:vir:10 543 VNALTQLLQGMLPQDPMRPALMGIIIDNMEGEG--LDDFKAFNRRQLLTQGIVKP-------RNQQ 599 (706) T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHhhcCccc--hHHHHHHHHHhhcccCCccc-------cchh Confidence 777777765432 21122 1222222211 33344455443322111111 1111 No 117 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.78 E-value=5.2e-08 Score=60.53 Aligned_cols=449 Identities=10% Similarity=0.073 Sum_probs=198.3 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAAR 82 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~ 82 (508) |=+-.++.|.+ ...++-.+ .+..++..-...|+.++.--.|.+-.....+......++-=.-+...++ T Consensus 1 m~~~~~~~~~~--------~~~~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~ 68 (535) T protein:vir:33 1 MADSKRTGLGE--------DGAKATYD----RLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLN 68 (535) T ss_pred CChhhhhccCh--------hHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHH Confidence 21212221111 11111111 1223344456677777654433221111111111111111234455566 Q ss_pred HHHHhhhcC--c--c--eEeeCCc------------HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 83 RIASVVFNE--K--A--EIHVKDN------------NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 83 ~~A~ll~~e--~--~--~i~~~~~------------~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~ 137 (508) .+|+.|++- | + ++.+.+. +..+++ +...+..++|...+.++..+....|.+.+.. T Consensus 69 ~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~ 148 (535) T protein:vir:33 69 NLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYL 148 (535) T ss_pred HHHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEe Confidence 665555432 2 1 2222221 122333 3445778899999999999999999988766 Q ss_pred EEeC-CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEE-------------------eecCCcEEEEEEEEEEEeCCc Q lcl|Aclame:pro 138 YIDG-NHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQR-------------------TESNQTKYYTLLEFHQWQDNG 196 (508) Q Consensus 138 ~~d~-~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~-------------------~~~~~~~~yt~lE~h~~~~~g 196 (508) -.+. +.+++..+|-.+++ +..| +|++.. +|...... ...+...+|+++-+ -.+++ T Consensus 149 ~~~~~~~~~f~~~pl~~~~-v~~d~~G~vd~-i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~--~~~~~ 224 (535) T protein:vir:33 149 PEPEGSYNPMKLYRLSSYV-VQRDAYGNVLQ-IVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYL--DEESG 224 (535) T ss_pred ecCCCCceeeEEEEcCeeE-EeeCCCCCeeE-EEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEe--eCCCC Confidence 5554 45778889988877 4455 455544 44332111 00111234444422 12334 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) +|..-++++ |..++...- . .+...-+|..++ =+...++.+|+|-...+.+-++.|+. T Consensus 225 ~~~~~~~~~--------~~~~~~~~~-~----------~~~~~~P~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (535) T protein:vir:33 225 DYLKYEEVE--------DVEIDGSDA-T----------YPTDAMPYIPVR----MVRIDGESYGRSYCEEYLGDLRSLEN 281 (535) T ss_pred cEEEEEEEe--------Ccccccccc-c----------cccccCCceeee----eeecCCCccccchHHHHHHHHHHHHH Confidence 444333322 112211110 0 011111122111 12334678999999999999999998 Q ss_pred HHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 THDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQ 355 (508) Q Consensus 277 ~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~ 355 (508) .--...... ...++...||++.+.... ...+.....|.+ .. .++.++..+...-+.....+.++.+.+.|... T Consensus 282 l~~~~l~~~~~~~~p~~lv~~~g~~~~~---~~~~~~~g~~v~--g~-~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~a 355 (535) T protein:vir:33 282 LQEAIVKMSMISAKVIGLVNPAGITQPR---RLTKAQTGDFVP--GR-REDIDFLQLEKQADFTVAKAVSDQIEARLSYA 355 (535) T ss_pred HHHHHHHHHHHHhcCceeeccccccchh---hcccCCceeeec--CC-cccceeeecccccchhHHHHHHHHHHHHHHHH Confidence 766665554 466777777654321110 111112222221 11 11111222222224455566666666666443 Q ss_pred hCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEE Q lcl|Aclame:pro 356 IGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIE 434 (508) Q Consensus 356 ~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~ 434 (508) .=+. .+...++...|||||....+...+...-.-.. -..-|..|+.-++.+....++.+.. +...+. T Consensus 356 f~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~----------p~~~v~ 423 (535) T protein:vir:33 356 FMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPEL----------PKEAVE 423 (535) T ss_pred Hhhh--hcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----------Ccccee Confidence 3111 12223445579999999999888888764333 4445566776666665444433221 122355 Q ss_pred EEeCCCccCC-HHHHHHHHHHHHh--CCC--------CCHHHHH---HhcCCCC-------HHHHHHHHHHHHHhccC-- Q lcl|Aclame:pro 435 CHFDDGVFVN-KDKQLEEDAKVLA--IGA--------LSKQTFL---QRNYGMT-------DEQAAEELAKIQSEAPT-- 491 (508) Q Consensus 435 i~f~d~i~~d-~~~e~~~~~~~~~--~Gi--------~s~et~l---~~~~~~~-------deea~~e~~ri~~E~~~-- 491 (508) +++--++..- +...++...+... +++ +....++ ....|++ +||+++..++..+.+.. T Consensus 424 ~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~~~~~~~ 503 (535) T protein:vir:33 424 PTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGVEN 503 (535) T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHHHHHHHH Confidence 5555444321 1222222222110 111 1122222 2234543 34554444333222110 Q ss_pred --CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 --DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 --~~~~~~~~~~~~~~~g~ 508 (508) ......+.+....+=.+ T Consensus 504 ~~~~~g~~~~~~~~~~~~~ 522 (535) T protein:vir:33 504 AAAAGGAGVGALATSSPEA 522 (535) T ss_pred HHHhhhhhhcchhhcCChh Confidence 00011111110000000 No 118 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=98.77 E-value=5.3e-08 Score=60.45 Aligned_cols=476 Identities=12% Similarity=0.042 Sum_probs=224.7 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC----C-ccccccccccchH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD----G-IKKKRLKNTINMA 77 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~----~-~~~~~~~~~~n~~ 77 (508) |=+++++++.+...++ ... +...++-+.+..+.++||.+...-|...... . ....+..+..|.- T Consensus 1 ma~~~~~~l~~~~~~~------~~~-----~~~~~~~r~~~~~d~~f~~~~G~QW~~~~~~~~~~~l~~~~~P~~~~N~i 69 (720) T protein:vir:35 1 MAETLQKRHEQIMRKF------DRA-----HSPQEAVREKCLEATRFARVPGGQWEGATAAGSELGKHFEKYPKFEINKI 69 (720) T ss_pred CchHHHHHHHHHHHHH------HHH-----HhhhHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhCCCCeEEEccH Confidence 5566666665544432 111 1223444556667788886443333211111 0 1113344677999 Q ss_pred HHHHHHHHHhhhcCcceEeeCCc-----HH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---C---- Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDN-----NE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---G---- 141 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~-----~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---~---- 141 (508) +.+|+..+++--...+.+.+... .. ++..+..+.+.++.......+...++..|-+|+.+++| + T Consensus 70 ~~~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~ 149 (720) T protein:vir:35 70 STELNRIISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPM 149 (720) T ss_pred HHHHHHHHhHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCC Confidence 99999999999877777776421 11 23344445556788888899999999999999999875 1 Q ss_pred ---CeeEEEEE--cCCeEE--EEEEcCCCeEEE--EEEEEEE------------------------EeecCCcEEEEEEE Q lcl|Aclame:pro 142 ---NHIKIAWV--RADQFY--PLQSNTNDISEA--AIASRTQ------------------------RTESNQTKYYTLLE 188 (508) Q Consensus 142 ---~~~~i~~v--~a~~~~--Pi~~d~~~~~~~--~f~~~~~------------------------~~~~~~~~~yt~lE 188 (508) +.+++..| |+..++ |-.... ....+ +|..++. ..+.......++.| T Consensus 150 ~~~~~i~i~~v~~~~~~v~~Dp~a~~~-D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~v~i~E 228 (720) T protein:vir:35 150 DERQRICLEPIYDPARSVWFDPDAKKY-DKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYIAK 228 (720) T ss_pred cccceeeEecccCchhheeeccccccc-ChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCceEEEE Confidence 23555543 344544 221110 11122 1222110 00111223445667 Q ss_pred EEEEeCCceEEEEEEEEecCCccccCcccccc---------ccccc-----------------cCCCcceeecCCCcceE Q lcl|Aclame:pro 189 FHQWQDNGSYQITNELYKSDSPDIVGNQVPLS---------TLPVY-----------------KELAPQVTISGLQRPLF 242 (508) Q Consensus 189 ~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~---------~~~~~-----------------~~l~~~~~~~g~~~~~f 242 (508) ++..+. -.++..+|..... |..+... ..+.. .-+.+.....+-...++ T Consensus 229 ~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~~~p~ 302 (720) T protein:vir:35 229 YYEVKK---ESVDVVSFQNPLT---SETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPG 302 (720) T ss_pred eeEEEE---EEEEEEEeecCCC---CCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCCCCCC Confidence 664332 1112222221110 1111000 00000 00000011111111223 Q ss_pred EEec-CCccccc--cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeec-hHHhcCCCCCCccCCcccceEee Q lcl|Aclame:pro 243 AYFK-TPGANNI--NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQ-PGMLRFDDEHKPTFDTEQNVYVG 318 (508) Q Consensus 243 ~~~~-~~~~n~~--~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (508) .+|| +|+.-.. ..++|..-+.+.++++..+.+|...|.+.+.+-..+..+..- .+.+..-.+.-.........|.. T Consensus 303 ~~fP~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~l~ 382 (720) T protein:vir:35 303 EHIPLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTGSIPIVGKSQIKTLEKYWANRNKNRPAFLP 382 (720) T ss_pred CccceEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHHcCCccccccCcchHHHHHHHhhccccccccccc Confidence 3333 1332211 134555567899999999999999999999874433322211 00110000000001111111111 Q ss_pred ec-CCCCC------CCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 319 VL-SDDNN------GLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 319 ~~-~~~~~------~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) ++ ..+.+ ...+...++.-....+...++.-...|...+|++...+|..++ .++.+|.++............ T Consensus 383 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~sn--~SG~Ai~~rq~qg~~~~~~~~ 460 (720) T protein:vir:35 383 LNEIVDKQGNIIAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPSN--IAKETVNHLMHRSDMSSFIYL 460 (720) T ss_pred cccccccCcccccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCcccc--hHHHHHHHHHHHHHHHHHHHH Confidence 11 01111 1234555554445677888898899999999999999997543 467788887766666666666 Q ss_pred HHHHHHHHHHHHHHHHHHhh-hc------ccc-cccccc-----------cc------ccccCcceEEEEeCCCccCCHH Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANA-GA------LFD-DGKPLF-----------TL------DSASQPLDIECHFDDGVFVNKD 446 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~-~~------~~~-~~~~~~-----------~~------~~~~~~~ei~i~f~d~i~~d~~ 446 (508) ..++.+.+..-+.++.+... |. +.. ++...+ +| ......++|.++=..+-+.-++ T Consensus 461 Dnl~~~~~~~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s~re 540 (720) T protein:vir:35 461 DNMAKSLKRAGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTARRD 540 (720) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCcccHHH Confidence 66777777666666665322 21 000 011100 00 1111224455554444444456 Q ss_pred HHHHHHHHHHhCCCCCHHH--------HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 447 KQLEEDAKVLAIGALSKQT--------FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 447 ~e~~~~~~~~~~Gi~s~et--------~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..+.++++.. .|++.. .+...-.+.- +++.+++++...++.....+. ...+ T Consensus 541 q~~~~m~qll~--~~~p~~~~~~~~~~~ile~~d~p~--~~e~~erirk~~~~~~~~~~~------~~e~ 600 (720) T protein:vir:35 541 ATVSVLTNLLA--GMLPQDPMRQVLQGIILDNMEGEG--LDEFKEYNRKQLLTQGVVKPR------NTEE 600 (720) T ss_pred HHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCchh--HHHHHHHHHhhcchhcccCcc------ChhH Confidence 66666666542 222211 1222222322 444455555444322111110 0011 No 119 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.73 E-value=7.6e-08 Score=59.61 Aligned_cols=428 Identities=10% Similarity=0.031 Sum_probs=194.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc-----cCccCC----Cc------ Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI-----HYQASD----GI------ 65 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-----~~~~~~----~~------ 65 (508) |+|+++ .++ +..+ -.+-..+.+-|.+--... .....+ .. T Consensus 1 m~~~~~--~~~----------------------a~~~--~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~ 54 (495) T protein:vir:10 1 MNMTPS--GYQ----------------------SLAS--GLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRA 54 (495) T ss_pred CCcccc--ccc----------------------ccch--hhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHH Confidence 777765 111 0000 000011112222211100 000000 00 Q ss_pred cccccccccchHHHHHHHHHHhhhcCcceEeeC-CcHHHHHHHHHHHH----------hhhHHHHHHHHHHHHhhcCCEE Q lcl|Aclame:pro 66 KKKRLKNTINMAKTAARRIASVVFNEKAEIHVK-DNNEADKFLNDVLE----------DNDFKNKFEEALEKGVALGGFA 134 (508) Q Consensus 66 ~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~-~~~~~~~~l~~~l~----------~n~f~~~~~~~~~~a~~~G~~~ 134 (508) +-+.....-++++..++.+++.+.|..++.... +++..++.++..+. ..+|......++...+.-|.++ T Consensus 55 RaRdl~rNn~~a~~av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f 134 (495) T protein:vir:10 55 RSHHNVRNNPWATNAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAF 134 (495) T ss_pred HHHHHHhcChHHHHHHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceE Confidence 000001123689999999999999986555432 23334444444432 2357777777888888889888 Q ss_pred EEEEEeC---C---eeEEEEEcCCeEE-EEEE----cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEE Q lcl|Aclame:pro 135 MRPYIDG---N---HIKIAWVRADQFY-PLQS----NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNE 203 (508) Q Consensus 135 ~~~~~d~---~---~~~i~~v~a~~~~-Pi~~----d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ 203 (508) .+..+.. | .+++..++|+.+- |... +.+.+...|-+..+ +...- |. T Consensus 135 ~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~-----Gr~va------------------Y~ 191 (495) T protein:vir:10 135 VIKKPRPLSEGLSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNG-----GKRKA------------------YC 191 (495) T ss_pred EEEeecccCCCCccceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCC-----CceEE------------------EE Confidence 7776642 2 3689999999952 3210 11223333322111 11112 22 Q ss_pred EEecCCccc--cCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 LYKSDSPDI--VGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF 281 (508) Q Consensus 204 ly~~~~~~~--lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~ 281 (508) +|+.+..+. .+.......+| ..-+.++... ..+-..|+|.++.+.. +..+|.-.+.- T Consensus 192 i~~~hpgd~~~~~~~~~~~rvp---------------A~~vlH~f~~-----r~gQ~RGis~la~i~~-l~~l~~y~dae 250 (495) T protein:vir:10 192 FYRNHPAESSLIGDPVDTVWIK---------------AEHVLHVTVL-----TVRSDAGAPWFQLLLR-LNELDQYEDAE 250 (495) T ss_pred EeecCCCcccccccccceeeec---------------hhheEecccc-----CCCcccCcchhHHHHH-HHHhhHHHHHH Confidence 222222110 01111111111 1112222111 2334469999887665 56666544433 Q ss_pred HHHHH-hccceeeechHHhcCCCCCCc-----cCCcccceEeeecC----CCCCCCcceEeeccCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 282 IWEIR-LGQKHIAVQPGMLRFDDEHKP-----TFDTEQNVYVGVLS----DDNNGLGVKDMTTPIRTVQYKDAIDHFIKE 351 (508) Q Consensus 282 ~~e~~-~~~~~i~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~i~~~~~dir~e~~~~~l~~~l~~ 351 (508) ...-+ .+.-..||-...- ++.... ..+........+.. .-..|..++.++|.-+..++..-+..+++. T Consensus 251 l~~a~i~A~~~~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~ 328 (495) T protein:vir:10 251 LVRKKTAALFAAFIQEATA--DSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLS 328 (495) T ss_pred HHHHHHhhhheeeeecCCC--ccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHH Confidence 22222 2333334421110 000000 00101001111111 112334588899987888899999999999 Q ss_pred HHHHhCCCchhcccccccc--chHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccccccccccccc Q lcl|Aclame:pro 352 FEVQIGLSTGTFSYSNDGV--KTATEVVSNNSMTYQTRSSYLTMVEKAI-DELCQSIFELANAGALFDDGKPLFTLDSAS 428 (508) Q Consensus 352 i~~~~g~s~~~~~~~~~~~--~TAtei~~~~~~l~~~~~~~~~~~~~al-~~li~~i~~l~~~~~~~~~~~~~~~~~~~~ 428 (508) |....|+++..++-+-++. .++.+......+.+..... +.+-..+ +.+.+..+..+-+.+..+ ..+.... T Consensus 329 iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~--~~~~~~~~~pi~~~~l~~a~l~G~i~-----~p~~~~~ 401 (495) T protein:vir:10 329 IAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQH--HMIIHQFCRPVGRWFMDFAVASGAVV-----IPDYLQR 401 (495) T ss_pred HHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCchhh Confidence 9999999999998765432 2333333333333322211 1121112 222222233222222111 1111111 Q ss_pred CcceEEEEe--CCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHh----ccC--CC------C Q lcl|Aclame:pro 429 QPLDIECHF--DDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSE----APT--DT------F 494 (508) Q Consensus 429 ~~~ei~i~f--~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E----~~~--~~------~ 494 (508) ...-..+.| .--.-+|+.++++.....+.+|++|.+..+... |.|-+++.+++++-++. --. .+ . T Consensus 402 ~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~p~~~~~~ 480 (495) T protein:vir:10 402 RRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAER-GYDMEELFDMISDANQLIDEYDLRLDSDPRYVNGS 480 (495) T ss_pred hHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCc Confidence 111123334 544567999999999999999999999998875 88777766555442222 110 00 0 Q ss_pred CCcccccCCCCCCC Q lcl|Aclame:pro 495 EGGRSAILNGGDGE 508 (508) Q Consensus 495 ~~~~~~~~~~~~g~ 508 (508) .-.+.....+.+++ T Consensus 481 ~~~~~~~~~~~~~~ 494 (495) T protein:vir:10 481 GAEQKSVMEAALNN 494 (495) T ss_pred cCCCCCCCCCCCCC Confidence 11111222222223 No 120 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=98.69 E-value=1.1e-07 Score=58.82 Aligned_cols=428 Identities=12% Similarity=0.116 Sum_probs=171.2 Q ss_pred CChHHHHHHHHHHHHHhh-------------h--hhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAAT-------------G--VTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGI 65 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~-------------~--~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~ 65 (508) ||+|++++..++-.-... + ...++++..+.+..+.+..+.. -.++..|.-+.-..++.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~l 76 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIG----SMSANPGFKTKPSIRNNQDL 76 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhh----eeecccccccCCccCChhHH Confidence 999999877654110000 0 0012222222222121111100 00111111000000000000 Q ss_pred cc-cccccccchHHHHHHHHHHhhhc--C---------cceEeeCC--------cHHHHHHHHHHHHhh---------hH Q lcl|Aclame:pro 66 KK-KRLKNTINMAKTAARRIASVVFN--E---------KAEIHVKD--------NNEADKFLNDVLEDN---------DF 116 (508) Q Consensus 66 ~~-~~~~~~~n~~~~iv~~~A~ll~~--e---------~~~i~~~~--------~~~~~~~l~~~l~~n---------~f 116 (508) +. .+.....++...+++..|+-+.. - ...+.+.+ ....-..|.+++..- .| T Consensus 77 ~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~ 156 (547) T protein:vir:63 77 HGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 156 (547) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchH Confidence 00 00111123344444444333221 0 01222221 111112344444321 23 Q ss_pred HHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC Q lcl|Aclame:pro 117 KNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD 194 (508) Q Consensus 117 ~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~ 194 (508) ...+..++...+..|.+++.+..|. |++ .+.+++|..+-++..+++.... ...+|. +. .+ T Consensus 157 ~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~-------------~~~~y~--~~---~~ 218 (547) T protein:vir:63 157 SSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPD-------------NGNRFV--QV---ID 218 (547) T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCcccccc-------------CceEEE--EE---cC Confidence 4455667777888899888777764 444 5788999988876433332210 011110 00 01 Q ss_pred CceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecC-CccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 195 NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKT-PGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 195 ~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) +....+ | + ..+ ..|++. |.. .....++|+|.+.-+...|.. T Consensus 219 -~~~~~~---~------------~----------~~e----------iih~r~n~~~--~~~~~~~G~Spi~~~~~~i~~ 260 (547) T protein:vir:63 219 -QKIVAT---F------------N----------ARE----------MAFAVRNPRS--DIYATGYGYPELEIALKQFIA 260 (547) T ss_pred -CcEEEE---e------------c----------ccc----------EEEecccCCC--CcccccccccHHHHHHHHHHH Confidence 110000 0 0 000 122221 111 111245799998888877776 Q ss_pred HHHHHHHHHHHHHhc-cceee--echHHhcCCCCCCccCCcc-cceEee--------ecCCCCCCCcceEeeccCCHHHH Q lcl|Aclame:pro 274 INDTHDQFIWEIRLG-QKHIA--VQPGMLRFDDEHKPTFDTE-QNVYVG--------VLSDDNNGLGVKDMTTPIRTVQY 341 (508) Q Consensus 274 lD~~~s~~~~e~~~~-~~~i~--v~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~i~~~~~dir~e~~ 341 (508) ...+-.....-|+.| ++.-+ ++... .-+.+....+... ...|.+ +.. .++..++.++......++ T Consensus 261 ~~~a~~~~~~~f~Ng~~p~giL~~~~~~-~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~--~~g~~~~~l~~~~~d~qf 337 (547) T protein:vir:63 261 HENTEAFNDRFFSHGGTTRGILQIKAAQ-QQSQHALEIFKREWKNSLSGINGSWQIPVVS--AEDVKFVNMTPSARDMEF 337 (547) T ss_pred HHHHHHHHHHHHHcCCCcceEEEecCCC-CCCHHHHHHHHHHHHHHhcCccccccccccc--CCCceEEEcCCChhHHHH Confidence 655544445556765 45533 22211 0011111001000 011111 111 122235555555556667 Q ss_pred HHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccc Q lcl|Aclame:pro 342 KDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFELANAGALFDDGKP 420 (508) Q Consensus 342 ~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l~~~~~~~~~~~~ 420 (508) .+..+...+.|....|++|..+|+...+..++....+. ++.++.. ....++.+|..++..|....+.. ++.. T Consensus 338 le~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~---t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~-L~~~--- 410 (547) T protein:vir:63 338 EKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSL---NEGNSAEKNQASKNKGLQPLLGFIEDFINKH-IVAE--- 410 (547) T ss_pred HHHHHHHHHHHHHHhCCCHHHcCccccccccccccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc--- Confidence 78788888999999999999998765432222111111 1112221 11234455555555544332221 1110 Q ss_pred ccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH--HHHH------------------- Q lcl|Aclame:pro 421 LFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD--EQAA------------------- 479 (508) Q Consensus 421 ~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d--eea~------------------- 479 (508) ....+.+.|+.....+ ..+.....+++.+|+|+.-+++... |+.. +... T Consensus 411 --------~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~g~lT~NE~R~~~-gl~P~~egGD~~~~~~~~~~~~~~~~~~~ 480 (547) T protein:vir:63 411 --------FGDKYTFQFVGGDIKS-ELESVKILAEKAKVAMTVNEVRKEL-NLPGDVIGGDIPLNGVIVQRIGQLMQQEQ 480 (547) T ss_pred --------cCCceEEEeecccccc-HHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCceeecccccccccccccccC Confidence 0123567777655655 4445556677788999999988753 2211 1000 Q ss_pred -------HHHHHHHHhcc-CCCCCCcccccCC------CCCCC Q lcl|Aclame:pro 480 -------EELAKIQSEAP-TDTFEGGRSAILN------GGDGE 508 (508) Q Consensus 480 -------~e~~ri~~E~~-~~~~~~~~~~~~~------~~~g~ 508 (508) +-...+.+..+ +..+.++.....+ +.||. T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 523 (547) T protein:vir:63 481 FEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQ 523 (547) T ss_pred CccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCcccc Confidence 00000000000 0000000000010 11111 No 121 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.69 E-value=1.1e-07 Score=58.79 Aligned_cols=449 Identities=10% Similarity=0.083 Sum_probs=201.4 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAAR 82 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~ 82 (508) |=+-.++.|-+ ...++-.+ .+..++..-...|+.++.--.|-+-.....+......++-=.-+...++ T Consensus 1 m~~~~~~~~~~--------~~~k~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~ 68 (535) T protein:vir:15 1 MADSKRTGLGE--------DGAKATYD----RLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLN 68 (535) T ss_pred CCccchhccch--------HHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHH Confidence 21212221111 11111111 1223344456677776654433221111111111112222234455666 Q ss_pred HHHHhhhcC--c--c--eEeeCCc------------HHHHHHHH-------HHHHhhhHHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 83 RIASVVFNE--K--A--EIHVKDN------------NEADKFLN-------DVLEDNDFKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 83 ~~A~ll~~e--~--~--~i~~~~~------------~~~~~~l~-------~~l~~n~f~~~~~~~~~~a~~~G~~~~~~ 137 (508) .+|+.|++- | + ++.+.+. +..+++|. ..+..++|...+.++..+....|.+.+.. T Consensus 69 ~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~ 148 (535) T protein:vir:15 69 NLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYL 148 (535) T ss_pred HHHHHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEe Confidence 666555432 2 1 2333221 12333443 44778899999999999999999987665 Q ss_pred EEeC-CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe-------------ec------CCcEEEEEEEEEEEeCCc Q lcl|Aclame:pro 138 YIDG-NHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT-------------ES------NQTKYYTLLEFHQWQDNG 196 (508) Q Consensus 138 ~~d~-~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~-------------~~------~~~~~yt~lE~h~~~~~g 196 (508) -.+. +.+++..+|-.+++- ..| +|++.. +|....... .. ..-.+|+++... .+++ T Consensus 149 ~~~~~~~~~f~~~pl~~~~v-~~d~~G~vd~-i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~--~~~~ 224 (535) T protein:vir:15 149 PEPEGSYNPMKLYRLSSYVV-QRDAYGNVLQ-IVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLD--EESG 224 (535) T ss_pred ecCCCCceeeEEEEcCeeEE-eeCCCCCeeE-EEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEe--cCCC Confidence 5554 457888999888774 445 455544 443322110 00 111344444221 2334 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) +|.+-++++ |..+++.. .. .+...-+|..++ =+...++.+|+|-...+.+-++.|+. T Consensus 225 ~~~~~~e~~--------g~~~~~~~-~~----------~~~~~~P~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (535) T protein:vir:15 225 DYLKYEEVE--------DVEIDGSD-AT----------YPTDAMPYIPVR----MVRIDGESYGRSYCEEYLGDLRSLEN 281 (535) T ss_pred cEEEEEEee--------Cccccccc-cc----------cccccCCceeee----eeecCCCccccchHHHHHHHHHHHHH Confidence 444333322 12221111 00 111111222111 12334678899999999999999998 Q ss_pred HHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 THDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQ 355 (508) Q Consensus 277 ~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~ 355 (508) .--...... ...++...||++.+.... ...+.....+.. .. .++.++..+...-+.....+.++.+.+.|... T Consensus 282 l~~~~l~~~~~~~~p~~lv~~~g~~~~~---~l~~~~~g~~v~--g~-~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~a 355 (535) T protein:vir:15 282 LQEAIVKMSMISAKVIGLVNPAGITQPR---RLTKAQTGDFVP--GR-REDIDFLQLEKQADFTVAKAVSDQIEARLSYA 355 (535) T ss_pred HHHHHHHHHHHHhcCceeecccccccch---hcccCCceeeec--CC-cccceeeecccccchhHHHHHHHHHHHHHHHH Confidence 766665554 466777777654321110 011111122221 11 11111222222224455566666666666443 Q ss_pred hCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEE Q lcl|Aclame:pro 356 IGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIE 434 (508) Q Consensus 356 ~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~ 434 (508) .=+. .+...++...|||||....+...+...-.-.. -..-|..|+.-++.+....++.+.. +...+. T Consensus 356 f~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~----------p~~~v~ 423 (535) T protein:vir:15 356 FMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPEL----------PKEAVE 423 (535) T ss_pred Hhhh--hcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----------Ccccee Confidence 3111 12223445579999999999888888764333 4445566776666665444433221 122355 Q ss_pred EEeCCCccCC-HHHHHHHHHHHHh--CCC--------CCHHHHH---HhcCCC-------CHHHHHHHHHHHHHhccC-- Q lcl|Aclame:pro 435 CHFDDGVFVN-KDKQLEEDAKVLA--IGA--------LSKQTFL---QRNYGM-------TDEQAAEELAKIQSEAPT-- 491 (508) Q Consensus 435 i~f~d~i~~d-~~~e~~~~~~~~~--~Gi--------~s~et~l---~~~~~~-------~deea~~e~~ri~~E~~~-- 491 (508) +++--++..- +...++...+... +++ +....++ ....|+ |+||++++.++.++.+.. T Consensus 424 ~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~~~~~~ 503 (535) T protein:vir:15 424 PTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGIEN 503 (535) T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHH Confidence 5554444321 2222222222110 111 1122222 223444 345665555444433211 Q ss_pred -CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 -DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 -~~~~~~~~~~~~~~~g~ 508 (508) +...+.......-..+| T Consensus 504 ~a~~~g~~~~~~~~~~p~ 521 (535) T protein:vir:15 504 AAATGGAGVGALATSSPE 521 (535) T ss_pred HHHHHHhhccchhccChH Confidence 11111111112223344 No 122 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.67 E-value=1.2e-07 Score=58.45 Aligned_cols=458 Identities=11% Similarity=0.059 Sum_probs=201.6 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCc---cCCCccccccccccchHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQ---ASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~---~~~~~~~~~~~~~~n~~~~ 79 (508) |-+..+..++|...++ ..++..-...|+.+|.---|....+ ..........++--+-+.. T Consensus 1 m~~~~~~~l~~r~~~l-----------------~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~ 63 (556) T protein:vir:73 1 MAETEKERLLKQLAQL-----------------KNERTSFESHWLDLSDFINPRGSRFLTSDVNRDDRRNTKIVDPTGSM 63 (556) T ss_pred CChhhHHHHHHHHHHH-----------------HHHhhHHHHHHHHHHHHhccccCCcCCCCCCcchhhcCccccchHHH Confidence 4444444444433221 2234444667777665433311111 1111111122333345556 Q ss_pred HHHHHHHhhhcC--c-----ceEeeCCc-----HHHH-------HHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 80 AARRIASVVFNE--K-----AEIHVKDN-----NEAD-------KFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 80 iv~~~A~ll~~e--~-----~~i~~~~~-----~~~~-------~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) .|+.+|+.|++- | .++.+.+. .... +.+...|..++|...+.++..+...+|.+.+.+-.| T Consensus 64 a~~~Las~l~~~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~ 143 (556) T protein:vir:73 64 AQRILSSGMMSGITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMED 143 (556) T ss_pred HHHHHHHHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeec Confidence 666666655432 1 23344332 1222 244557778899999999999999999998765555 Q ss_pred C-CeeEEEEEcCCeEEEEEEcCCCeEEEEEEE-EEEE-------e-ec---------CCcEEEEEEEEEEEeCCceEEEE Q lcl|Aclame:pro 141 G-NHIKIAWVRADQFYPLQSNTNDISEAAIAS-RTQR-------T-ES---------NQTKYYTLLEFHQWQDNGSYQIT 201 (508) Q Consensus 141 ~-~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~-~~~~-------~-~~---------~~~~~yt~lE~h~~~~~g~~~I~ 201 (508) . +.+++..++..+++- ..|..+....+|.. ++.. + +. .++.+.. .+.|. T Consensus 144 ~~~~~r~~~~~l~~~~~-~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~-----------~~~v~ 211 (556) T protein:vir:73 144 DQDVIRTMPFPIGSYYL-ANSPRGSVDTCIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYET-----------WVEVN 211 (556) T ss_pred CCceEEEEEeecceeEE-eeCCCCCeEEEEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccc-----------eEEEE Confidence 3 557888999999874 45543333444432 1110 0 00 0111111 12222 Q ss_pred EEEEecCCccc---cCccccccccccccCCCcc--eeecCCCcceEEEecCCccccccCCCcCCcc-hhhhHHHHHHHHH Q lcl|Aclame:pro 202 NELYKSDSPDI---VGNQVPLSTLPVYKELAPQ--VTISGLQRPLFAYFKTPGANNINIESPLGLG-VVDNAKHVLDDIN 275 (508) Q Consensus 202 ~~ly~~~~~~~---lG~~v~l~~~~~~~~l~~~--~~~~g~~~~~f~~~~~~~~n~~~~~splG~S-~~~~~~~lid~lD 275 (508) +.+|...+.+. -+...|+..+---...... ....|+..-+|..+ .=+...++.+|+| -...+.+-++.|+ T Consensus 212 ~~V~pr~~~~~~~~~~~~~p~~s~~~~~~~~~~~vl~esg~~e~P~~~~----Rw~~~~ge~YGrg~P~~~~lgD~k~L~ 287 (556) T protein:vir:73 212 HCITPNVNRDSGKMDSKNKPYRSVYFESGGDSDKLLRESGFDEFPILAP----RWEVNGEDVYASSCPGMLALGQVKALQ 287 (556) T ss_pred EEEeccccccccccCcccceEEEEEEEecCCCceecccCCcccCCceee----eeeecCCcccccCccHHHhHHHHHHHH Confidence 22332111100 0111111111000000000 01122222122211 1223446789999 4889999999999 Q ss_pred HHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEe---eccCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 DTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDM---TTPIRTVQYKDAIDHFIKE 351 (508) Q Consensus 276 ~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~dir~e~~~~~l~~~l~~ 351 (508) ..--..+...+ ..++.+.||+++.... ..+.++...|..+..+ ...++.+ +++ .....+.++.+.+. T Consensus 288 ~l~~~~l~~~~~~~~pp~~v~~~~~~~~----~~~~pgg~~~~~~~~~---~~~i~p~~~~~~d--~~~~~~~i~~~~~r 358 (556) T protein:vir:73 288 VEQKRKAQLIDKATNPPMVAPTSLKNQR----VSLLPGDVTYLDVISG---QDGFKPAYLVNPN--TADLLADIQDTRQT 358 (556) T ss_pred HHHHHHHHHHHHHhcCceeccccccccc----eeeccCccccccCCCC---ccceeeecccccc--HHHHHHHHHHHHHH Confidence 87777666654 5677777776642110 0111121122222211 1234433 344 33334445555555 Q ss_pred HHHHhCCCc-hhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccC Q lcl|Aclame:pro 352 FEVQIGLST-GTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQ 429 (508) Q Consensus 352 i~~~~g~s~-~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~ 429 (508) |....-.+- ..++.......|||||............-.-.. -...|..||..++.+....+.++..-... . T Consensus 359 I~~af~~d~~~~l~~~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l------~ 432 (556) T protein:vir:73 359 INSAYFVDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVL------Q 432 (556) T ss_pred HHHHhhcchhhhhccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh------c Confidence 543331110 112334445689999999999988887765444 45567788888877776655544321111 1 Q ss_pred cceEEEEeCCCccCCHH-HH---HHHHHHHHhC--CC-------CCHHHHH---HhcCCCCH------HHHHHHHHHHHH Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKD-KQ---LEEDAKVLAI--GA-------LSKQTFL---QRNYGMTD------EQAAEELAKIQS 487 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~-~e---~~~~~~~~~~--Gi-------~s~et~l---~~~~~~~d------eea~~e~~ri~~ 487 (508) ..+|+|.+--.+..... .. +.+.++.++. ++ +....++ ....|++. +|++++-++..+ T Consensus 433 ~~~i~v~yis~La~aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~ 512 (556) T protein:vir:73 433 GMPLRIEYISVMAQAQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAK 512 (556) T ss_pred CceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHH Confidence 22466665444332111 11 1122222211 11 2222322 33455543 444332221111 Q ss_pred hccCCC------CCCcccccCCCC--CCC Q lcl|Aclame:pro 488 EAPTDT------FEGGRSAILNGG--DGE 508 (508) Q Consensus 488 E~~~~~------~~~~~~~~~~~~--~g~ 508 (508) +++... ...+.....++. ++. T Consensus 513 ~qq~~~~~~~~~~a~~~~~~~~~~~~~~~ 541 (556) T protein:vir:73 513 QAQAAQAMAMGQAAAQGAKTLSETQTSDP 541 (556) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCH Confidence 110000 000000001110 111 No 123 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=98.66 E-value=1.3e-07 Score=58.33 Aligned_cols=396 Identities=12% Similarity=0.134 Sum_probs=165.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc--chHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI--NMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~--n~~~ 78 (508) ||||.|+|++|++-... .+.....+ ++ +....+.+.+-..+ ....+.... -.+++. .--. T Consensus 7 mg~f~r~~~~~~~~~~~--------~~~~~~~~--~~-----~~~~~~~~~~~~~~-~g~~v~~~~--al~~~~V~~~i~ 68 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPV--------DIGGGQTF--TP-----VNATARDLGIIISD-TGAAVNADA--IMRLDAVAACVK 68 (432) T ss_pred cchhhhhhhhccccccc--------cccccccc--cc-----Cccchhhhcccccc-cCcccchHh--hhccHHHHHHHH Confidence 99999999988653211 00000000 00 00000111111000 000010000 000110 0113 Q ss_pred HHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHH--hhhH---HHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLE--DNDF---KNKFEEALEKGVALGGFAMRPYIDGNHI-KIAW 148 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~--~n~f---~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~ 148 (508) .|++..|++ |+.+--.+++ ..+.-+..+|. -|.. ..-.+.++..++..|.+++.+..++|++ .+-+ T Consensus 69 ~Ia~~ia~l----p~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g~~~~L~~ 144 (432) T protein:vir:81 69 LVSQAIAAM----PLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQY 144 (432) T ss_pred HHHHhhhhC----ceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEE Confidence 455555544 4443211100 01111223332 1111 1233445566777898888777777765 4566 Q ss_pred EcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 149 VRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) ++|+.+-+...++|++ .|+. +.. +|..+ .++ . T Consensus 145 l~~~~v~v~~~~~g~~------------------~y~~----~~~-~g~~~----------------~~~-----~---- 176 (432) T protein:vir:81 145 LANDRLTITTDPKGNT------------------AYRY----RRT-DGQMI----------------DIP-----K---- 176 (432) T ss_pred EcCCceEEEECCCCcE------------------EEEE----Eec-CceEE----------------EEc-----c---- Confidence 7787766542222221 1110 000 11100 000 0 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCC Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEH 305 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~ 305 (508) .+ +.+++.+-.+ .-.|+|-+.-+...|......-....+-|+.| ++..++ |.. + +++. T Consensus 177 -~~----------iih~r~~~~d-----g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~-l--~~e~ 237 (432) T protein:vir:81 177 -QQ----------IWKIMGYSLD-----GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRF-L--TDDQ 237 (432) T ss_pred -cc----------EEEecCCCCC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCC-C--CHHH Confidence 00 1123322111 12588888777777665554433334445543 443333 211 1 1111 Q ss_pred CccC----CcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHH Q lcl|Aclame:pro 306 KPTF----DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNN 380 (508) Q Consensus 306 ~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~ 380 (508) ...+ ....+....+-. +++..++.++......+..+..+...++|....|++|..+++...+. .+++.+.... T Consensus 238 ~~~~~~~~~~~~nag~~~vl--~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~ 315 (432) T protein:vir:81 238 YDSFAKKVSGSVEAGRAPLL--EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQ 315 (432) T ss_pred HHHHHHHHhhhhcCCCceec--CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHH Confidence 0001 000000000111 12224555655555566777778888999999999999998865443 2333232222 Q ss_pred HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 381 SMTY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 381 ~~l~-~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) ...+ .++.-....++.+|..- ++.... ...+.+.|+++.-+..|.++.++.+.+++.+| T Consensus 316 ~~f~~~tl~P~~~~ie~~l~~k------------Ll~~~~--------~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G 375 (432) T protein:vir:81 316 LGFLTMTLSPWLRRIEQSIALN------------LLSPAE--------RRRYFADFDTSALLRADSAARSSYYSQLVNNG 375 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHhh------------ccCccc--------cCceEEEeechhhhccCHHHHHHHHHHHHhCC Confidence 2222 23333333344333321 111100 11245666666667789999999999999999 Q ss_pred CCCHHHHHHhc--CCCCHHHH----HHH---HHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRN--YGMTDEQA----AEE---LAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~--~~~~deea----~~e---~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +|+.-+++... |-+...+. ..- +... .++....+..+..+..++.+.+ T Consensus 376 ~~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~-~~~~~~~~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 376 LMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEPASGLGNQQQDKVSK 432 (432) T ss_pred CCCHHHHHHHhCCCCCCCCcceEeecCcccchhhh-ccCCCCCCCCCCCCcccccccC Confidence 99999988753 33322110 000 0111 1111111111111111111111 No 124 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=98.64 E-value=1.5e-07 Score=57.97 Aligned_cols=460 Identities=9% Similarity=0.027 Sum_probs=200.5 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc---cCccCCCccccccccccchHHHHHHHHHHhhhcC--c Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI---HYQASDGIKKKRLKNTINMAKTAARRIASVVFNE--K 92 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e--~ 92 (508) |-.....+++..+.+ .+..++..-...|+.+|.---|.. .............++-=.-+...++.+|+.|++- | T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:98 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 222222222221111 233445555667777765433321 1111111111222333355666666666666533 1 Q ss_pred -----ceEeeCCc-----HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 93 -----AEIHVKDN-----NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQF 154 (508) Q Consensus 93 -----~~i~~~~~-----~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~ 154 (508) +++.+.+. ...+++ +...|..++|...+.++..+....|.+.+..-.|. +.+++..+|..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:98 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 23333322 223333 34577788999999999999999999987555554 5678888999998 Q ss_pred EEEEEcCCCeEEEEEEE-EEEE-------e-ec---------CCcEEEEEEEEEEEeCCceEEEEEEEEecCCc--ccc- Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIAS-RTQR-------T-ES---------NQTKYYTLLEFHQWQDNGSYQITNELYKSDSP--DIV- 213 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~-~~~~-------~-~~---------~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~--~~l- 213 (508) +- ..|..+....+|.. ++.. + +. +++.+-..+ .|.+.+|-..+. ... T Consensus 160 ~v-~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v-----------~v~~~V~pr~~~~~~~~~ 227 (555) T protein:vir:98 160 AI-AADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWV-----------TVIHAIEPRADRDPSKRD 227 (555) T ss_pred EE-eeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceE-----------EEEEEEeeccCcCcCCCC Confidence 74 45544333444432 1110 0 00 000000111 122222211110 000 Q ss_pred CccccccccccccCCCcc--eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccc Q lcl|Aclame:pro 214 GNQVPLSTLPVYKELAPQ--VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQK 290 (508) Q Consensus 214 G~~v~l~~~~~~~~l~~~--~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~ 290 (508) +.-.|+..+--....... ....|...-||..++ -+...++.+|+|--..+.+-+..|+..--....... ..++ T Consensus 228 ~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~p 303 (555) T protein:vir:98 228 DRNMAWKSVYFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNP 303 (555) T ss_pred ccccceEEEEEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 011111111000000000 001122222222221 123346789999999999999999985544455443 4566 Q ss_pred eeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCc--hhcccccc Q lcl|Aclame:pro 291 HIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLST--GTFSYSND 368 (508) Q Consensus 291 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~ 368 (508) ...||++..... ..+.++..-|... ....+. ..-.+++........+.++.+.+.|.... +.. ..++..+. T Consensus 304 p~~v~~~~~~~~----~~~~pgg~~~v~~-g~~~d~-~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~ 376 (555) T protein:vir:98 304 PLQLPVSAKNQD----ISTVPGGLSYVDA-AAPNGG-IRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTN 376 (555) T ss_pred ceeecccccccc----ceecccccccccc-CCCCcc-eecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCC Confidence 666766542110 1111221112111 111111 11122333334555566666666664433 111 12333445 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDK 447 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~ 447 (508) ...|||||....+...+...-.-.. -...|..|+.-++.+....++.+..-... ...+|+|++--.+...-.. T Consensus 377 ~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l------~~~~i~v~yis~La~aq~~ 450 (555) T protein:vir:98 377 PQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM------QGVDLNVEFVSMLAQAQRA 450 (555) T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh------cCceeEEEeccHHHHHHHH Confidence 5689999999999888888874433 46677788877777766555444321111 1234666655444322111 Q ss_pred -H---HHHHHHHHh--CCC-------CCHHHH---HHhcCCC------CHHHHHHHHHHHHHhccC-------------- Q lcl|Aclame:pro 448 -Q---LEEDAKVLA--IGA-------LSKQTF---LQRNYGM------TDEQAAEELAKIQSEAPT-------------- 491 (508) Q Consensus 448 -e---~~~~~~~~~--~Gi-------~s~et~---l~~~~~~------~deea~~e~~ri~~E~~~-------------- 491 (508) . +.+..+.+. +++ +....+ +....|+ |+||+++..++ +++++. T Consensus 451 ~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:98 451 IATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Confidence 1 112222221 122 122222 3334555 33554443222 111100 Q ss_pred --------CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 --------DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 --------~~~~~~~~~~~~~~~g~ 508 (508) ...++..++..+..+|= T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555) T protein:vir:98 530 AAKLGSVDTSKQNALTDVTRAFSGY 554 (555) T ss_pred HHHhcccccCcchhHHHHHhhhccC Confidence 01111111111111111 No 125 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=98.64 E-value=1.5e-07 Score=57.97 Aligned_cols=460 Identities=9% Similarity=0.027 Sum_probs=200.5 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc---cCccCCCccccccccccchHHHHHHHHHHhhhcC--c Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI---HYQASDGIKKKRLKNTINMAKTAARRIASVVFNE--K 92 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e--~ 92 (508) |-.....+++..+.+ .+..++..-...|+.+|.---|.. .............++-=.-+...++.+|+.|++- | T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 222222222221111 233445555667777765433321 1111111111222333355666666666666533 1 Q ss_pred -----ceEeeCCc-----HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 93 -----AEIHVKDN-----NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQF 154 (508) Q Consensus 93 -----~~i~~~~~-----~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~ 154 (508) +++.+.+. ...+++ +...|..++|...+.++..+....|.+.+..-.|. +.+++..+|..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 23333322 223333 34577788999999999999999999987555554 5678888999998 Q ss_pred EEEEEcCCCeEEEEEEE-EEEE-------e-ec---------CCcEEEEEEEEEEEeCCceEEEEEEEEecCCc--ccc- Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIAS-RTQR-------T-ES---------NQTKYYTLLEFHQWQDNGSYQITNELYKSDSP--DIV- 213 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~-~~~~-------~-~~---------~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~--~~l- 213 (508) +- ..|..+....+|.. ++.. + +. +++.+-..+ .|.+.+|-..+. ... T Consensus 160 ~v-~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v-----------~v~~~V~pr~~~~~~~~~ 227 (555) T protein:vir:10 160 AI-AADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWV-----------TVIHAIEPRADRDPSKRD 227 (555) T ss_pred EE-eeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceE-----------EEEEEEeeccCcCcCCCC Confidence 74 45544333444432 1110 0 00 000000111 122222211110 000 Q ss_pred CccccccccccccCCCcc--eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccc Q lcl|Aclame:pro 214 GNQVPLSTLPVYKELAPQ--VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQK 290 (508) Q Consensus 214 G~~v~l~~~~~~~~l~~~--~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~ 290 (508) +.-.|+..+--....... ....|...-||..++ -+...++.+|+|--..+.+-+..|+..--....... ..++ T Consensus 228 ~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~p 303 (555) T protein:vir:10 228 DRNMAWKSVYFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNP 303 (555) T ss_pred ccccceEEEEEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 011111111000000000 001122222222221 123346789999999999999999985544455443 4566 Q ss_pred eeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCc--hhcccccc Q lcl|Aclame:pro 291 HIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLST--GTFSYSND 368 (508) Q Consensus 291 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~ 368 (508) ...||++..... ..+.++..-|... ....+. ..-.+++........+.++.+.+.|.... +.. ..++..+. T Consensus 304 p~~v~~~~~~~~----~~~~pgg~~~v~~-g~~~d~-~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~ 376 (555) T protein:vir:10 304 PLQLPVSAKNQD----ISTVPGGLSYVDA-AAPNGG-IRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTN 376 (555) T ss_pred ceeecccccccc----ceecccccccccc-CCCCcc-eecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCC Confidence 666766542110 1111221112111 111111 11122333334555566666666664433 111 12333445 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDK 447 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~ 447 (508) ...|||||....+...+...-.-.. -...|..|+.-++.+....++.+..-... ...+|+|++--.+...-.. T Consensus 377 ~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l------~~~~i~v~yis~La~aq~~ 450 (555) T protein:vir:10 377 PQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM------QGVDLNVEFVSMLAQAQRA 450 (555) T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh------cCceeEEEeccHHHHHHHH Confidence 5689999999999888888874433 46677788877777766555444321111 1234666655444322111 Q ss_pred -H---HHHHHHHHh--CCC-------CCHHHH---HHhcCCC------CHHHHHHHHHHHHHhccC-------------- Q lcl|Aclame:pro 448 -Q---LEEDAKVLA--IGA-------LSKQTF---LQRNYGM------TDEQAAEELAKIQSEAPT-------------- 491 (508) Q Consensus 448 -e---~~~~~~~~~--~Gi-------~s~et~---l~~~~~~------~deea~~e~~ri~~E~~~-------------- 491 (508) . +.+..+.+. +++ +....+ +....|+ |+||+++..++ +++++. T Consensus 451 ~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:10 451 IATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Confidence 1 112222221 122 122222 3334555 33554443222 111100 Q ss_pred --------CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 --------DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 --------~~~~~~~~~~~~~~~g~ 508 (508) ...++..++..+..+|= T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555) T protein:vir:10 530 AAKLGSVDTSKQNALTDVTRAFSGY 554 (555) T ss_pred HHHhcccccCcchhHHHHHhhhccC Confidence 01111111111111111 No 126 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=98.64 E-value=1.5e-07 Score=57.97 Aligned_cols=460 Identities=9% Similarity=0.027 Sum_probs=200.5 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccc---cCccCCCccccccccccchHHHHHHHHHHhhhcC--c Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI---HYQASDGIKKKRLKNTINMAKTAARRIASVVFNE--K 92 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e--~ 92 (508) |-.....+++..+.+ .+..++..-...|+.+|.---|.. .............++-=.-+...++.+|+.|++- | T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 222222222221111 233445555667777765433321 1111111111222333355666666666666533 1 Q ss_pred -----ceEeeCCc-----HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 93 -----AEIHVKDN-----NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQF 154 (508) Q Consensus 93 -----~~i~~~~~-----~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~~i~~v~a~~~ 154 (508) +++.+.+. ...+++ +...|..++|...+.++..+....|.+.+..-.|. +.+++..+|..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 23333322 223333 34577788999999999999999999987555554 5678888999998 Q ss_pred EEEEEcCCCeEEEEEEE-EEEE-------e-ec---------CCcEEEEEEEEEEEeCCceEEEEEEEEecCCc--ccc- Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIAS-RTQR-------T-ES---------NQTKYYTLLEFHQWQDNGSYQITNELYKSDSP--DIV- 213 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~-~~~~-------~-~~---------~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~--~~l- 213 (508) +- ..|..+....+|.. ++.. + +. +++.+-..+ .|.+.+|-..+. ... T Consensus 160 ~v-~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v-----------~v~~~V~pr~~~~~~~~~ 227 (555) T protein:vir:10 160 AI-AADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWV-----------TVIHAIEPRADRDPSKRD 227 (555) T ss_pred EE-eeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceE-----------EEEEEEeeccCcCcCCCC Confidence 74 45544333444432 1110 0 00 000000111 122222211110 000 Q ss_pred CccccccccccccCCCcc--eeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccc Q lcl|Aclame:pro 214 GNQVPLSTLPVYKELAPQ--VTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQK 290 (508) Q Consensus 214 G~~v~l~~~~~~~~l~~~--~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~ 290 (508) +.-.|+..+--....... ....|...-||..++ -+...++.+|+|--..+.+-+..|+..--....... ..++ T Consensus 228 ~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~p 303 (555) T protein:vir:10 228 DRNMAWKSVYFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNP 303 (555) T ss_pred ccccceEEEEEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 011111111000000000 001122222222221 123346789999999999999999985544455443 4566 Q ss_pred eeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCc--hhcccccc Q lcl|Aclame:pro 291 HIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLST--GTFSYSND 368 (508) Q Consensus 291 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~ 368 (508) ...||++..... ..+.++..-|... ....+. ..-.+++........+.++.+.+.|.... +.. ..++..+. T Consensus 304 p~~v~~~~~~~~----~~~~pgg~~~v~~-g~~~d~-~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~ 376 (555) T protein:vir:10 304 PLQLPVSAKNQD----ISTVPGGLSYVDA-AAPNGG-IRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTN 376 (555) T ss_pred ceeecccccccc----ceecccccccccc-CCCCcc-eecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCC Confidence 666766542110 1111221112111 111111 11122333334555566666666664433 111 12333445 Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHH Q lcl|Aclame:pro 369 GVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDK 447 (508) Q Consensus 369 ~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~ 447 (508) ...|||||....+...+...-.-.. -...|..|+.-++.+....++.+..-... ...+|+|++--.+...-.. T Consensus 377 ~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l------~~~~i~v~yis~La~aq~~ 450 (555) T protein:vir:10 377 PQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM------QGVDLNVEFVSMLAQAQRA 450 (555) T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh------cCceeEEEeccHHHHHHHH Confidence 5689999999999888888874433 46677788877777766555444321111 1234666655444322111 Q ss_pred -H---HHHHHHHHh--CCC-------CCHHHH---HHhcCCC------CHHHHHHHHHHHHHhccC-------------- Q lcl|Aclame:pro 448 -Q---LEEDAKVLA--IGA-------LSKQTF---LQRNYGM------TDEQAAEELAKIQSEAPT-------------- 491 (508) Q Consensus 448 -e---~~~~~~~~~--~Gi-------~s~et~---l~~~~~~------~deea~~e~~ri~~E~~~-------------- 491 (508) . +.+..+.+. +++ +....+ +....|+ |+||+++..++ +++++. T Consensus 451 ~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:10 451 IATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Confidence 1 112222221 122 122222 3334555 33554443222 111100 Q ss_pred --------CCCCCcccccCCCCCCC Q lcl|Aclame:pro 492 --------DTFEGGRSAILNGGDGE 508 (508) Q Consensus 492 --------~~~~~~~~~~~~~~~g~ 508 (508) ...++..++..+..+|= T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555) T protein:vir:10 530 AAKLGSVDTSKQNALTDVTRAFSGY 554 (555) T ss_pred HHHhcccccCcchhHHHHHhhhccC Confidence 01111111111111111 No 127 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.62 E-value=1.9e-07 Score=57.44 Aligned_cols=402 Identities=12% Similarity=0.150 Sum_probs=175.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+||+++|.- +...+ ...+.++.. .... ..|..+.+..+. +... .-..+.--... T Consensus 1 M~~~~r~~~~~~~-----~~r~~------~~~~~~~~~-~~~~---~~~~g~~~~~~~---v~~~----~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQT------SQVIELNKD-DEKL---LEWLGISPSTIS---VKGK----NALKVATVFAC 58 (432) T ss_pred CChHHHHHHhcCc-----cccCc------ccccccCCc-hHHH---HHHhCCCcCccc---cchh----hhhccHHHHHH Confidence 9999999998741 00111 111222210 1111 223322222111 1100 00111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWV 149 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v 149 (508) ++.+|+-+-+=|+.+--.+++ ..+..|..+|.. -.....++.++...+..|.+++.+..+. |++ .+..+ T Consensus 59 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i 138 (432) T protein:vir:10 59 IKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPI 138 (432) T ss_pred HHHHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 344444443335554211111 011124444431 1223345556777788899998888875 444 67778 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-+...+.+.+.. ....|. ....+|.. ..| |. T Consensus 139 ~~~~v~v~~d~~~~~~~-------------~~~~~y-----~~~~~g~~----~~~-----------------~~----- 174 (432) T protein:vir:10 139 DASKVTVYIDDVGLLNS-------------KTKMWY-----VVNTGGQQ----RVL-----------------KP----- 174 (432) T ss_pred cCceeEEEEcCcccccc-------------cceEEE-----EEecCCeE----EEE-----------------cc----- Confidence 88887664222221100 000110 01111110 001 00 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~ 306 (508) . -..+++.+.+ .+...|+|.+.-+...|+.....-.....-|+. +++.-++ +..+ +++.. T Consensus 175 ~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l---~~e~~ 237 (432) T protein:vir:10 175 E----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL---NEDAK 237 (432) T ss_pred c----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC---CHHHH Confidence 0 0234443321 123459999988888887776555545555665 4555443 1111 11111 Q ss_pred ccCCcc-cceEeeecC-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHH Q lcl|Aclame:pro 307 PTFDTE-QNVYVGVLS-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) Q Consensus 307 ~~~~~~-~~~~~~~~~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~ 379 (508) ..+... ...|.+... + -+++..++.++......+..+..+...++|....|++|..++...++. .++.+.... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 100000 011111100 0 012233555555444556677777778899999999999998755443 222222111 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .++.+|..++..|....+. .++.... ......+.|+++.-+..|..+.++...+++..| T Consensus 318 -------------~~~~~l~P~~~~ie~~ln~-kLl~~~~-------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G 376 (432) T protein:vir:10 318 -------------FYTDTLQATLTMYEQEMTY-KLFLDSE-------LDKGFYSKFNVDAILRADIKTRYEAYRTGIQGG 376 (432) T ss_pred -------------HHHHHHHHHHHHHHHHHHH-hhcChhh-------cCCCcEEEeechhhhcCCHHHHHHHHHHHHhCC Confidence 1222333333332221111 0111000 011235667777777789999999999999999 Q ss_pred CCCHHHHHHhcCCCCHH-HHHH-----HHHHHHHhccCCCCCCcc---cccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDE-QAAE-----ELAKIQSEAPTDTFEGGR---SAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~de-ea~~-----e~~ri~~E~~~~~~~~~~---~~~~~~~~g~ 508 (508) +++.-+++... |+.+- ...+ -+..+.. .......++. ....++++|+ T Consensus 377 ~~t~NE~R~~~-g~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 377 FLKPNEARSKE-DLPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CcCHHHHHHHh-CCCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCCCCC Confidence 99999988753 33221 0110 0001100 0000001111 1122333333 No 128 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.62 E-value=1.9e-07 Score=57.44 Aligned_cols=402 Identities=12% Similarity=0.150 Sum_probs=175.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+||+++|.- +...+ ...+.++.. .... ..|..+.+..+. +... .-..+.--... T Consensus 1 M~~~~r~~~~~~~-----~~r~~------~~~~~~~~~-~~~~---~~~~g~~~~~~~---v~~~----~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQT------SQVIELNKD-DEKL---LEWLGISPSTIS---VKGK----NALKVATVFAC 58 (432) T ss_pred CChHHHHHHhcCc-----cccCc------ccccccCCc-hHHH---HHHhCCCcCccc---cchh----hhhccHHHHHH Confidence 9999999998741 00111 111222210 1111 223322222111 1100 00111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWV 149 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v 149 (508) ++.+|+-+-+=|+.+--.+++ ..+..|..+|.. -.....++.++...+..|.+++.+..+. |++ .+..+ T Consensus 59 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i 138 (432) T protein:vir:10 59 IKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPI 138 (432) T ss_pred HHHHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 344444443335554211111 011124444431 1223345556777788899998888875 444 67778 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-+...+.+.+.. ....|. ....+|.. ..| |. T Consensus 139 ~~~~v~v~~d~~~~~~~-------------~~~~~y-----~~~~~g~~----~~~-----------------~~----- 174 (432) T protein:vir:10 139 DASKVTVYIDDVGLLNS-------------KTKMWY-----VVNTGGQQ----RVL-----------------KP----- 174 (432) T ss_pred cCceeEEEEcCcccccc-------------cceEEE-----EEecCCeE----EEE-----------------cc----- Confidence 88887664222221100 000110 01111110 001 00 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~ 306 (508) . -..+++.+.+ .+...|+|.+.-+...|+.....-.....-|+. +++.-++ +..+ +++.. T Consensus 175 ~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l---~~e~~ 237 (432) T protein:vir:10 175 E----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL---NEDAK 237 (432) T ss_pred c----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC---CHHHH Confidence 0 0234443321 123459999988888887776555545555665 4555443 1111 11111 Q ss_pred ccCCcc-cceEeeecC-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHH Q lcl|Aclame:pro 307 PTFDTE-QNVYVGVLS-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) Q Consensus 307 ~~~~~~-~~~~~~~~~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~ 379 (508) ..+... ...|.+... + -+++..++.++......+..+..+...++|....|++|..++...++. .++.+.... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 100000 011111100 0 012233555555444556677777778899999999999998755443 222222111 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .++.+|..++..|....+. .++.... ......+.|+++.-+..|..+.++...+++..| T Consensus 318 -------------~~~~~l~P~~~~ie~~ln~-kLl~~~~-------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G 376 (432) T protein:vir:10 318 -------------FYTDTLQATLTMYEQEMTY-KLFLDSE-------LDKGFYSKFNVDAILRADIKTRYEAYRTGIQGG 376 (432) T ss_pred -------------HHHHHHHHHHHHHHHHHHH-hhcChhh-------cCCCcEEEeechhhhcCCHHHHHHHHHHHHhCC Confidence 1222333333332221111 0111000 011235667777777789999999999999999 Q ss_pred CCCHHHHHHhcCCCCHH-HHHH-----HHHHHHHhccCCCCCCcc---cccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDE-QAAE-----ELAKIQSEAPTDTFEGGR---SAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~de-ea~~-----e~~ri~~E~~~~~~~~~~---~~~~~~~~g~ 508 (508) +++.-+++... |+.+- ...+ -+..+.. .......++. ....++++|+ T Consensus 377 ~~t~NE~R~~~-g~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 377 FLKPNEARSKE-DLPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CcCHHHHHHHh-CCCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCCCCC Confidence 99999988753 33221 0110 0001100 0000001111 1122333333 No 129 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.62 E-value=1.9e-07 Score=57.44 Aligned_cols=402 Identities=12% Similarity=0.150 Sum_probs=175.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+||+++|.- +...+ ...+.++.. .... ..|..+.+..+. +... .-..+.--... T Consensus 1 M~~~~r~~~~~~~-----~~r~~------~~~~~~~~~-~~~~---~~~~g~~~~~~~---v~~~----~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQT------SQVIELNKD-DEKL---LEWLGISPSTIS---VKGK----NALKVATVFAC 58 (432) T ss_pred CChHHHHHHhcCc-----cccCc------ccccccCCc-hHHH---HHHhCCCcCccc---cchh----hhhccHHHHHH Confidence 9999999998741 00111 111222210 1111 223322222111 1100 00111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWV 149 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v 149 (508) ++.+|+-+-+=|+.+--.+++ ..+..|..+|.. -.....++.++...+..|.+++.+..+. |++ .+..+ T Consensus 59 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i 138 (432) T protein:vir:10 59 IKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPI 138 (432) T ss_pred HHHHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 344444443335554211111 011124444431 1223345556777788899998888875 444 67778 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-+...+.+.+.. ....|. ....+|.. ..| |. T Consensus 139 ~~~~v~v~~d~~~~~~~-------------~~~~~y-----~~~~~g~~----~~~-----------------~~----- 174 (432) T protein:vir:10 139 DASKVTVYIDDVGLLNS-------------KTKMWY-----VVNTGGQQ----RVL-----------------KP----- 174 (432) T ss_pred cCceeEEEEcCcccccc-------------cceEEE-----EEecCCeE----EEE-----------------cc----- Confidence 88887664222221100 000110 01111110 001 00 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~ 306 (508) . -..+++.+.+ .+...|+|.+.-+...|+.....-.....-|+. +++.-++ +..+ +++.. T Consensus 175 ~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l---~~e~~ 237 (432) T protein:vir:10 175 E----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL---NEDAK 237 (432) T ss_pred c----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC---CHHHH Confidence 0 0234443321 123459999988888887776555545555665 4555443 1111 11111 Q ss_pred ccCCcc-cceEeeecC-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHH Q lcl|Aclame:pro 307 PTFDTE-QNVYVGVLS-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) Q Consensus 307 ~~~~~~-~~~~~~~~~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~ 379 (508) ..+... ...|.+... + -+++..++.++......+..+..+...++|....|++|..++...++. .++.+.... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 100000 011111100 0 012233555555444556677777778899999999999998755443 222222111 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .++.+|..++..|....+. .++.... ......+.|+++.-+..|..+.++...+++..| T Consensus 318 -------------~~~~~l~P~~~~ie~~ln~-kLl~~~~-------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G 376 (432) T protein:vir:10 318 -------------FYTDTLQATLTMYEQEMTY-KLFLDSE-------LDKGFYSKFNVDAILRADIKTRYEAYRTGIQGG 376 (432) T ss_pred -------------HHHHHHHHHHHHHHHHHHH-hhcChhh-------cCCCcEEEeechhhhcCCHHHHHHHHHHHHhCC Confidence 1222333333332221111 0111000 011235667777777789999999999999999 Q ss_pred CCCHHHHHHhcCCCCHH-HHHH-----HHHHHHHhccCCCCCCcc---cccCCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDE-QAAE-----ELAKIQSEAPTDTFEGGR---SAILNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~de-ea~~-----e~~ri~~E~~~~~~~~~~---~~~~~~~~g~ 508 (508) +++.-+++... |+.+- ...+ -+..+.. .......++. ....++++|+ T Consensus 377 ~~t~NE~R~~~-g~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 377 FLKPNEARSKE-DLPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CcCHHHHHHHh-CCCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCCCCC Confidence 99999988753 33221 0110 0001100 0000001111 1122333333 No 130 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=98.61 E-value=1.9e-07 Score=57.40 Aligned_cols=430 Identities=13% Similarity=0.107 Sum_probs=170.5 Q ss_pred CChHHHHH-------HHHHHHH----Hhh----hhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCc Q lcl|Aclame:pro 1 MGLIQRIK-------DLFWKGA----AAT----GVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGI 65 (508) Q Consensus 1 m~~~~~ik-------~~~~~~~----~~~----~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~ 65 (508) ||+|++++ ++|...= ..+ ....+|++..+.+..+.+..+...+ .+...|.-++-+..+ ... T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~-~~~~~~~~r~~~~~~---~~l 80 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSM-SANPGFKTKPSIRNN---QDL 80 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccccce-ecCcccccCccccCh---hHH Confidence 99999887 2221000 000 0112232332222222211111000 000111111111100 000 Q ss_pred cc-cccccccchHHHHHHHHHHhhhc-----------CcceEeeCCcH--------HHHHHHHHHHHhh---------hH Q lcl|Aclame:pro 66 KK-KRLKNTINMAKTAARRIASVVFN-----------EKAEIHVKDNN--------EADKFLNDVLEDN---------DF 116 (508) Q Consensus 66 ~~-~~~~~~~n~~~~iv~~~A~ll~~-----------e~~~i~~~~~~--------~~~~~l~~~l~~n---------~f 116 (508) +. .+....-++...+++..|+.+.. -+..+.+.+.+ ...+.+.+++..- .| T Consensus 81 ~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~ 160 (551) T protein:vir:80 81 HGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 160 (551) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchH Confidence 00 00111113444454555444321 12233332211 1112344444321 23 Q ss_pred HHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeC Q lcl|Aclame:pro 117 KNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD 194 (508) Q Consensus 117 ~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~ 194 (508) ...+..++...+..|.+++.+..+. |++ .+..++|.++-++..+++.+..-.+ +|. +. .+ T Consensus 161 ~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~-------------~y~--~~---~~ 222 (551) T protein:vir:80 161 SSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGN-------------RFV--QV---ID 222 (551) T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCce-------------EEE--EE---eC Confidence 3455556777788899988777764 554 5788999998876444443211111 110 00 00 Q ss_pred CceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecC-CccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 195 NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKT-PGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 195 ~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) |...++ |. ..+ ..|++. |.. .....++|+|-+.-+...|.. T Consensus 223 -g~~~~~---~~----------------------~~e----------iiH~~~n~~~--~~~~~~~G~spi~~a~~~i~~ 264 (551) T protein:vir:80 223 -QKIVAT---FN----------------------ARE----------MAFAVRNPRS--DIYATGYGYPELEIALKQFIA 264 (551) T ss_pred -CcEEEE---Ec----------------------ccc----------eEEecccCCC--CcccccccccHHHHHHHHHHH Confidence 100000 00 000 122221 111 111245799988888887766 Q ss_pred HHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceEeeec------CCCCCCCcceEeeccCCHHHHHH Q lcl|Aclame:pro 274 INDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVL------SDDNNGLGVKDMTTPIRTVQYKD 343 (508) Q Consensus 274 lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~dir~e~~~~ 343 (508) ...+-....+-|+.| ++.-++ +... .-+.+....+... ...|.+.. .=..++..++.++......++.+ T Consensus 265 ~~a~~~~~~~~f~Ng~~p~giL~~~~~~-~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle 343 (551) T protein:vir:80 265 HENTEAFNDRFFSHGGTTRGILQIKAAQ-QQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEK 343 (551) T ss_pred HHHHHHHHHHHHHcCCCcceEEEEcCCC-CCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHH Confidence 554433344456664 555333 2110 0011100001000 01121110 00012223445555555566778 Q ss_pred HHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccccc Q lcl|Aclame:pro 344 AIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFELANAGALFDDGKPLF 422 (508) Q Consensus 344 ~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~ 422 (508) ..+...+.|....|++|..+|+...+..++....+.. +.++.. ....++.+|..++..|-...+.. ++.. T Consensus 344 ~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t---~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~-L~~~----- 414 (551) T protein:vir:80 344 WLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLN---EGNSAEKNQASKNKGLQPLLGFIEDFINKH-IVAE----- 414 (551) T ss_pred HHHHHHHHHHHHhcCCHHHcCcccccccccccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccc----- Confidence 8888889999999999999987554322222111111 111111 11234444555544443222211 1110 Q ss_pred ccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH--HHHH-------------------HH Q lcl|Aclame:pro 423 TLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD--EQAA-------------------EE 481 (508) Q Consensus 423 ~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d--eea~-------------------~e 481 (508) ....+.|.|+.....+. .+.....++..+|+|+.-+++... |++. +... .+ T Consensus 415 ------~~~~~~f~f~~~~~~~~-~~~~~~~~~~~~g~lT~NE~R~~~-gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~ 486 (551) T protein:vir:80 415 ------FGDKYTFQFVGGDIKSE-LESVKILAEKAKVAMTVNEVRKEL-NLPGDVIGGDIPLNGVIVQRIGQLMQQEQFE 486 (551) T ss_pred ------cCCceEEEeeccChhhH-HHHHHHHHHHhcCCcCHHHHHHHh-CCCCCCCCCceeecccccccccccccccCcc Confidence 01236677876655553 344455667778999999988754 2211 1000 00 Q ss_pred HHHHH-------Hhcc----CCCCCCccc---ccCCCCCCC Q lcl|Aclame:pro 482 LAKIQ-------SEAP----TDTFEGGRS---AILNGGDGE 508 (508) Q Consensus 482 ~~ri~-------~E~~----~~~~~~~~~---~~~~~~~g~ 508 (508) -++.+ ...+ .+.+..+.. .+..+.||. T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 527 (551) T protein:vir:80 487 HEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQ 527 (551) T ss_pred hhhhhhccccccCcCCCCCCCCCCCCCCccccCCCcccccc Confidence 01111 0000 000111111 111122222 No 131 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=98.60 E-value=2.1e-07 Score=57.21 Aligned_cols=451 Identities=12% Similarity=0.035 Sum_probs=203.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC----ccCCCc--ccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY----QASDGI--KKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~----~~~~~~--~~~~~~~~~ 74 (508) |.- +.|.+-.+ .+..++..-...|+++|.---|.... ....+. ..+..++-- T Consensus 1 ~~~------------------~~l~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~i~d 58 (547) T protein:vir:10 1 MEN------------------SKIVKRLD----FLKTDRKNVEQIWDCIRKYIMPMRSDFFSDLRSEGSINWNQNREVFD 58 (547) T ss_pred CCH------------------HHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccccccCCCCCccccccccccccc Confidence 111 11111111 22334555567777777544332211 111111 112223333 Q ss_pred chHHHHHHHHHHhhhcC--c-----ceEeeCCc-----HHHHHHH-------HHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNE--K-----AEIHVKDN-----NEADKFL-------NDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e--~-----~~i~~~~~-----~~~~~~l-------~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) +-+...|+.+|+.|++- | .++.+.+. +..+++| ...+..++|...+.++..+...+|.+.+ T Consensus 59 st~~~a~~~Las~L~~~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l 138 (547) T protein:vir:10 59 STAGDGLETLSSSLHGSLTSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIM 138 (547) T ss_pred chHHHHHHHHHHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeE Confidence 55666666666666533 1 23333332 2333444 4567778999999999999999999987 Q ss_pred EEEEeC---CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEE-EEEEe-------------------ecCCcEEEEEEEEEE Q lcl|Aclame:pro 136 RPYIDG---NHIKIAWVRADQFYPLQSN-TNDISEAAIAS-RTQRT-------------------ESNQTKYYTLLEFHQ 191 (508) Q Consensus 136 ~~~~d~---~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~-~~~~~-------------------~~~~~~~yt~lE~h~ 191 (508) .+--|+ +.+++..+|..+++- ..| +|++. .+|.. ++... ..+.+.+...+|.+ T Consensus 139 ~~~~d~~~~~~~r~~~~pl~~~~v-~~d~~G~v~-~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~- 215 (547) T protein:vir:10 139 VEEEDEDEEGSVVFQSSPIQDSYF-EEDSRGQVV-NFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVV- 215 (547) T ss_pred EeccCCCCCCceeEEEeecceEEE-eeCCCcCee-eeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEE- Confidence 765553 568899999999874 445 45553 34432 11100 00111111112211 Q ss_pred EeCCceEEEEEEEEecCCcc--cc------CccccccccccccCCCc--c-eeecCCCcceEEEecCCccccccCCCcCC Q lcl|Aclame:pro 192 WQDNGSYQITNELYKSDSPD--IV------GNQVPLSTLPVYKELAP--Q-VTISGLQRPLFAYFKTPGANNINIESPLG 260 (508) Q Consensus 192 ~~~~g~~~I~~~ly~~~~~~--~l------G~~v~l~~~~~~~~l~~--~-~~~~g~~~~~f~~~~~~~~n~~~~~splG 260 (508) +.+|...+.+ .. ....|+..+ |-.... . ..-.|...-||..++ =+...++.+| T Consensus 216 ----------~~v~~~~~~~~~~~~~~~~~~~~~p~~s~--~~e~~~~~~~l~esg~~e~P~~~~R----w~~~~ge~YG 279 (547) T protein:vir:10 216 ----------MCVFTRYDKKQNRNAGTVLAPTERPFGKK--WILKEGAVQLGEEGGYYEMPAYAIR----WRKSAGSQWG 279 (547) T ss_pred ----------EEEeeccCCCCCccccceeeccccceeEE--EEEecCceeeeecCCcccCCeeeee----eeecCCcccc Confidence 1111110000 00 000111110 000000 0 000122222222221 2233467899 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHH Q lcl|Aclame:pro 261 LGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTV 339 (508) Q Consensus 261 ~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e 339 (508) +|-...+.+-++.|+..--..+...+ ..++.+.||++.+.. + ....++--.+ .+ +...++.++...+.. T Consensus 280 rgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~~-~---~~~~pgg~~~----~~--~~~~v~pl~~~~~~~ 349 (547) T protein:vir:10 280 FGPSHLALPDVLTANRYVELVLRSSEKVIDPAIMVTERGLIS-D---IDLGASGLTV----VR--DMESMKPFESRARFD 349 (547) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecccccccc-c---ceecCCeeee----cC--CcccceeeecccchH Confidence 99999999999999987777776664 566777676543211 1 0011111111 11 122455555444445 Q ss_pred HHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccc Q lcl|Aclame:pro 340 QYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDG 418 (508) Q Consensus 340 ~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~ 418 (508) .....++.+.+.|.... =...|...++...|||||....+...+...-.-..+ ..-|..||..++.+....++.+.. T Consensus 350 ~~~~~i~~~~~rI~~af--~~d~~~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~ 427 (547) T protein:vir:10 350 VSSIQLTDLRSAVRRIY--YVDQLQMKDSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGEL 427 (547) T ss_pred HHHHHHHHHHHHHHHHh--hhhhhhcCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC Confidence 55566666655554322 112223334566899999999999888888755444 356677777777776555444331 Q ss_pred ccccccccccCcceEEEEeCCCccCCH----HHHHHHHHHHHh--CCC-------CCHHHHH---HhcCCC------CHH Q lcl|Aclame:pro 419 KPLFTLDSASQPLDIECHFDDGVFVNK----DKQLEEDAKVLA--IGA-------LSKQTFL---QRNYGM------TDE 476 (508) Q Consensus 419 ~~~~~~~~~~~~~ei~i~f~d~i~~d~----~~e~~~~~~~~~--~Gi-------~s~et~l---~~~~~~------~de 476 (508) -.. -....-.++.|++-..+.... -+.+.+.++.++ +++ +....++ ....|+ |++ T Consensus 428 p~~---l~~~~~~~~~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~e 504 (547) T protein:vir:10 428 PSK---LLESGKAAMDIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKA 504 (547) T ss_pred chh---hhccCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHH Confidence 100 000112345566544443321 111223333321 121 2223332 334555 445 Q ss_pred HHHHHHHHHHHhccCCCCCCc-----ccccCCCCCCC Q lcl|Aclame:pro 477 QAAEELAKIQSEAPTDTFEGG-----RSAILNGGDGE 508 (508) Q Consensus 477 ea~~e~~ri~~E~~~~~~~~~-----~~~~~~~~~g~ 508 (508) |++++.++.++.++ .+.+-. ..++.+=+-|+ T Consensus 505 ev~~~r~qr~~~~q-~~~qaa~~~~~g~~m~~~~~~~ 540 (547) T protein:vir:10 505 KVTSIRKNRSQTQQ-KAEQAAIAEAEGNAMEAQGKGQ 540 (547) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCcc Confidence 65554433221111 100000 00011111222 No 132 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.60 E-value=2.1e-07 Score=57.17 Aligned_cols=457 Identities=9% Similarity=0.063 Sum_probs=202.3 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccC---ccCCCccccccccccchHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHY---QASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~---~~~~~~~~~~~~~~~n~~~~ 79 (508) |-++.+..+++...++ ..++..-...|+.+|.---|.... ...........++--+-+.. T Consensus 1 m~~~~~~~l~~r~~~l-----------------~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~ 63 (559) T protein:vir:95 1 MAETTKERLNKQFAQL-----------------ESERQSFEPHWRELSDYINPRGSRFLTSEVNRNDRRNTRIIDSTGTM 63 (559) T ss_pred CChhhHHHHHHHHHHH-----------------HHHhhHHHHHHHHHHHHhccccCCcCCCCCCcccccccccccchHHH Confidence 5555555444333332 234455566777776543332211 11111111222333345566 Q ss_pred HHHHHHHhhhcC--c-----ceEeeCCc-----HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 80 AARRIASVVFNE--K-----AEIHVKDN-----NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 80 iv~~~A~ll~~e--~-----~~i~~~~~-----~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) .|+.+|+.|++- | .++.+.+. ...+++ +...+..++|...+.++..+...+|.+.+.+-.| T Consensus 64 a~~~Las~l~~~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d 143 (559) T protein:vir:95 64 AARTLASGMMSGITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDD 143 (559) T ss_pred HHHHHHHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecC Confidence 666666665433 1 23333332 223334 4456777889999999999999999998766555 Q ss_pred C-CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEE-EEEEe--------ec---------CCcEEEEEEEEEEEeCCceEEE Q lcl|Aclame:pro 141 G-NHIKIAWVRADQFYPLQSN-TNDISEAAIAS-RTQRT--------ES---------NQTKYYTLLEFHQWQDNGSYQI 200 (508) Q Consensus 141 ~-~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~-~~~~~--------~~---------~~~~~yt~lE~h~~~~~g~~~I 200 (508) . +.+++..+|..+++- ..| +|++ ..+|.. ++... +. +++.+.. .+.| T Consensus 144 ~~~~~r~~~~~l~~~~v-~~d~~G~v-d~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~-----------~v~v 210 (559) T protein:vir:95 144 DEDIIRTMPFPIGSYYL-ANSPRGSV-DTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEK-----------WIEV 210 (559) T ss_pred CCceeEEEEeecCeEEE-eeCCCCCe-EEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCC-----------eEEE Confidence 4 457899999999884 455 4555 444432 11110 00 0111111 1222 Q ss_pred EEEEEecCCcc--c-cCccccccccccccCCCcc--eeecCCCcceEEEecCCccccccCCCcCCcc-hhhhHHHHHHHH Q lcl|Aclame:pro 201 TNELYKSDSPD--I-VGNQVPLSTLPVYKELAPQ--VTISGLQRPLFAYFKTPGANNINIESPLGLG-VVDNAKHVLDDI 274 (508) Q Consensus 201 ~~~ly~~~~~~--~-lG~~v~l~~~~~~~~l~~~--~~~~g~~~~~f~~~~~~~~n~~~~~splG~S-~~~~~~~lid~l 274 (508) .+.+|...+.+ . -....|+..+-.-..-... ....|+..-||..+ .=+...++.+|+| .-..+.+-++.| T Consensus 211 ~~~V~pr~~~~~~~~~~~~~pf~s~~~e~~~~~~~~l~esg~~e~P~~~~----Rw~~~~ge~YGrg~P~~~al~d~k~L 286 (559) T protein:vir:95 211 MHSVYPNIDRDTSKLDSKNKPFKSVYYEVGGDNDKLLRESGFDEFPIMAP----RWEVNGEDVYGSSCPGMLALGPVKAL 286 (559) T ss_pred EEEEeccccccccccccccceEEEEEEEecCCCceeeecCCcccCCccce----eeeecCCccccccchHHHhhHHHHHH Confidence 22222111110 0 0111111111000000000 01122211112111 1233446789999 588999999999 Q ss_pred HHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEe---eccCCHHHHHHHHHHHHH Q lcl|Aclame:pro 275 NDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDM---TTPIRTVQYKDAIDHFIK 350 (508) Q Consensus 275 D~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~dir~e~~~~~l~~~l~ 350 (508) +..--..+...+ ..++.+.+|.++....- .+.++...|. ... ....+++.. ++++ ....+.++.+.+ T Consensus 287 ~~l~~~~l~~~~~~~~pp~~v~~~~~~~~~----~l~pgg~~~~--~~~-~~~~~i~p~~~~~~~~--~~~~~~i~~~~~ 357 (559) T protein:vir:95 287 QLLQKRKSQLIDKATNPPMVAPTSLKNQRA----SLLPGDITYI--DQI-TGQDGFRPAYLVNPST--ADLVADIQDTRQ 357 (559) T ss_pred HHHHHHHHHHHHHHhcCceeccccccccce----eeeccceeee--CCC-CCcccceeecccccch--HHHHHHHHHHHH Confidence 987777676664 56777777766432110 1111111121 111 111233332 3333 322333455444 Q ss_pred HHHHHhCCCc-hhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhcccccccccccccccc Q lcl|Aclame:pro 351 EFEVQIGLST-GTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSAS 428 (508) Q Consensus 351 ~i~~~~g~s~-~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~ 428 (508) .|....-.+. ..+........|||||............-.-.. -...|..||..++.+....++++..-... T Consensus 358 rI~~af~~d~~~~l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l------ 431 (559) T protein:vir:95 358 IINSAYFVDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVM------ 431 (559) T ss_pred HHHHHhhhhhHHHhhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc------ Confidence 4433321111 112233445679999999999988887764444 45567788888877776655544321111 Q ss_pred CcceEEEEeCCCccCCH-HHH---HHHHHHHHh--CCC-------CCHHHHH---HhcCCCCH------HHHHHHHHHHH Q lcl|Aclame:pro 429 QPLDIECHFDDGVFVNK-DKQ---LEEDAKVLA--IGA-------LSKQTFL---QRNYGMTD------EQAAEELAKIQ 486 (508) Q Consensus 429 ~~~ei~i~f~d~i~~d~-~~e---~~~~~~~~~--~Gi-------~s~et~l---~~~~~~~d------eea~~e~~ri~ 486 (508) ...+++|++--.+..-- ... +.+.++.++ +++ +....++ ....|++. +|+++.-++.+ T Consensus 432 ~~~~i~v~~is~La~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~ 511 (559) T protein:vir:95 432 EGMPLKVEYISVMAQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRA 511 (559) T ss_pred cCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHH Confidence 11245566543332210 111 112222211 111 2223332 23445543 44332211111 Q ss_pred Hhcc-------------------CC-CCC----CcccccCCCCCCC Q lcl|Aclame:pro 487 SEAP-------------------TD-TFE----GGRSAILNGGDGE 508 (508) Q Consensus 487 ~E~~-------------------~~-~~~----~~~~~~~~~~~g~ 508 (508) +.++ ++ ... .+..+..+|+.|. T Consensus 512 ~~qq~~q~~~~~~~aa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 557 (559) T protein:vir:95 512 QQQQQQQMMAMGMAAAQGVKTLSEAKTSDPSVLSAMANAVSGQGGQ 557 (559) T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCChhHHHHHHHhhcCcccc Confidence 0000 00 000 1111222233333 No 133 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.59 E-value=2.3e-07 Score=56.95 Aligned_cols=448 Identities=10% Similarity=0.032 Sum_probs=205.1 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcC--CCc-----cccCccCCC-----ccc--- Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSD--KLQ-----YIHYQASDG-----IKK--- 67 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g--~~~-----~~~~~~~~~-----~~~--- 67 (508) |++.+.+.+....... +. .+......-|.| ... |........ ... T Consensus 1 m~~~~~r~~~~~a~~~------------------~~--~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr 60 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGR------------------PE--QSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIAD 60 (553) T ss_pred Ccchhhhhhccccccc------------------ch--hhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHH Confidence 4443333322111000 00 001111122322 111 111000000 000 Q ss_pred ---cccccccchHHHHHHHHHHhhhcCcceEeeCC------------cHHHHHHHHHHHH--------------hhhHHH Q lcl|Aclame:pro 68 ---KRLKNTINMAKTAARRIASVVFNEKAEIHVKD------------NNEADKFLNDVLE--------------DNDFKN 118 (508) Q Consensus 68 ---~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~------------~~~~~~~l~~~l~--------------~n~f~~ 118 (508) +.....-++++-+++.+++.+.|..++....- ++..++.++..+. ..+|.. T Consensus 61 ~RaRdL~rNn~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~ 140 (553) T protein:vir:63 61 ARGRDMADNDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTG 140 (553) T ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHH Confidence 00011236889999999999999876655321 1112222322222 124666 Q ss_pred HHHHHHHHHhhcCCEEEEEEEeC--C---eeEEEEEcCCeEEEEEEc---CCCeEEEEEEEEEEEeecCCcEEEEEEEEE Q lcl|Aclame:pro 119 KFEEALEKGVALGGFAMRPYIDG--N---HIKIAWVRADQFYPLQSN---TNDISEAAIASRTQRTESNQTKYYTLLEFH 190 (508) Q Consensus 119 ~~~~~~~~a~~~G~~~~~~~~d~--~---~~~i~~v~a~~~~Pi~~d---~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h 190 (508) ....++...+.-|.++.++.+.. + .+++..++|+.+ +...+ .+.+...|-+. T Consensus 141 ~q~l~~r~~~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl-~~~~~~~~~~~i~~GVE~d------------------- 200 (553) T protein:vir:63 141 LIRLGVVGYVKTGEVLATAEWDRAANRPYATCFQMVSTDRL-SNPYQQLDTPTLRRGVQYD------------------- 200 (553) T ss_pred HHHHHHHHHHhCCceEEEeeeccCCCCcccceEEEechhhc-CCCCCCCCCCeeEeeeEEC------------------- Confidence 66777778888899988888753 2 368899999884 22121 22233333111 Q ss_pred EEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHH Q lcl|Aclame:pro 191 QWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHV 270 (508) Q Consensus 191 ~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~l 270 (508) ..|. .+-|.+|+.+..+..+.. ....+|..+.. ..-++.+-+.++ ......+-.-|+|.|+.++.. T Consensus 201 ---~~Gr-~vaY~i~~~hPgd~~~~~---~~~~~~~r~~~---~~~v~a~~vlH~----f~~~r~gQ~RGis~lapvl~~ 266 (553) T protein:vir:63 201 ---KRGR-PQGYWIQVAHPGDLYQMA---PDMYKWKFVQQ---SKPWGRRQVIHI----LEPREPDQSRGIADIVSGLKD 266 (553) T ss_pred ---CCCc-eEEEEeeccCCCcccccc---ccccceeeecc---ccccChhHheec----ccccCCCcccCCchHHHHHHH Confidence 1111 122233333222211000 00011111100 112233323322 222333445699999999999 Q ss_pred HHHHHHHHHHHHHHHH-hccceeeechH-----Hhc----CCCCCC--ccCCc---ccceE------eeecC----CCCC Q lcl|Aclame:pro 271 LDDINDTHDQFIWEIR-LGQKHIAVQPG-----MLR----FDDEHK--PTFDT---EQNVY------VGVLS----DDNN 325 (508) Q Consensus 271 id~lD~~~s~~~~e~~-~~~~~i~v~~~-----~~~----~~~~~~--~~~~~---~~~~~------~~~~~----~~~~ 325 (508) +..+|.-.+.-...-+ .+--..||-.. ... ..+++. ..+.. ....+ ..+.. .-.. T Consensus 267 l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~p 346 (553) T protein:vir:63 267 MRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFP 346 (553) T ss_pred HHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccceeecCceeeecCC Confidence 9999986655443322 33334444211 110 000100 00000 00000 00000 0112 Q ss_pred CCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc--chHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HH Q lcl|Aclame:pro 326 GLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV--KTATEVVSNNSMTYQTRSSYLTMVEKAIDE-LC 402 (508) Q Consensus 326 ~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~~~~~~l~~~~~~~~~~~~~al~~-li 402 (508) +..++.++|.-+..++..-...+++.|....|+++..++.+-++. .++.+......+.+..+. ..|...+.+ +. T Consensus 347 Ge~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q---~~~~~~~~~pi~ 423 (553) T protein:vir:63 347 GTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEGRK---KMCADRLATEFF 423 (553) T ss_pred CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH Confidence 345888899888899999999999999999999999988775432 344444444444444332 233333333 22 Q ss_pred HHHHHHHhhhcccc--cccccccc---ccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHH Q lcl|Aclame:pro 403 QSIFELANAGALFD--DGKPLFTL---DSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQ 477 (508) Q Consensus 403 ~~i~~l~~~~~~~~--~~~~~~~~---~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~dee 477 (508) +..+..+-+.+..+ .+.+.+.. .....-..+.+...--..+|+.++++.....+.+|+.|.+..+... |.+-++ T Consensus 424 ~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~-G~D~~~ 502 (553) T protein:vir:63 424 TLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARL-GGDFRK 502 (553) T ss_pred HHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh-CCCHHH Confidence 32233222221111 11100000 0000011234444444567999999999999999999999998877 877777 Q ss_pred HHHHHHHHH----HhccC--C-----------C---CCCcccccCCCCCCC Q lcl|Aclame:pro 478 AAEELAKIQ----SEAPT--D-----------T---FEGGRSAILNGGDGE 508 (508) Q Consensus 478 a~~e~~ri~----~E~~~--~-----------~---~~~~~~~~~~~~~g~ 508 (508) +.+++++-+ +---. . . +..+.....++.+|| T Consensus 503 v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 553 (553) T protein:vir:63 503 SFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQGE 553 (553) T ss_pred HHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCcccccC Confidence 655554432 21100 0 0 011111122223333 No 134 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=98.57 E-value=2.7e-07 Score=56.58 Aligned_cols=389 Identities=11% Similarity=0.082 Sum_probs=172.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++|+++|++... .+.++.. .+..|..+... . .. .-+.+.--... T Consensus 1 MG~~~~~~~~~~~~~~---------------~~~~~~~------~~~~~~g~~~~--~-----~~----~al~~~~V~~~ 48 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNE---------------TVDMTNP------LLLQWLGVDPD--T-----PR----NQLSEATYFAC 48 (411) T ss_pred CchHHHHHhhccCccc---------------ccccchH------HHHHHhcCccc--C-----hh----hhhccHHHHHH Confidence 9999999998864221 1122221 12234433321 0 00 00111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIAWVR 150 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~v~ 150 (508) ++.+|+-+-+=|+.+--.+++ ..+..+..+|.. | ....-.+.++...+..|.+++.+..++|++ .+..++ T Consensus 49 v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~l~~l~ 128 (411) T protein:vir:81 49 LKILSESLGKLPLKMYQKTERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGPQLQALWILP 128 (411) T ss_pred HHHHHHhHhhCceeEEEecCCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCceEEEEEEC Confidence 344444443334444211100 001112233321 1 223344555667788899988888887765 466788 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCc Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 230 (508) |+.+-|+..+.+... . ....+|+ + ....+| ..+. ++. T Consensus 129 ~~~v~~~~~~~~~~~-~-----------~~~~~~~-~---~~~~~g------------------~~~~---~~~------ 165 (411) T protein:vir:81 129 SQYVTIVVDDRGLLG-E-----------KNAIWYR-Y---NDPYDG------------------KMYV---FRN------ 165 (411) T ss_pred CceEEEEEcCccccc-c-----------cceEEEE-E---EecCCc------------------eEEE---Ecc------ Confidence 888776532222210 0 0000111 0 000001 0000 000 Q ss_pred ceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCc Q lcl|Aclame:pro 231 QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKP 307 (508) Q Consensus 231 ~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~ 307 (508) .-..++|.+.. .+...|+|.+.-+...|+.....-....+-|+.| .+.-++ |..+ +++... T Consensus 166 ---------~eiih~k~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---~~e~~~ 229 (411) T protein:vir:81 166 ---------DEILHFKTSVT----FDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDL---NQEARD 229 (411) T ss_pred ---------ccEEEEcCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC---CHHHHH Confidence 00234443211 1234699998888888777775555555556654 455443 2211 111100 Q ss_pred cCCcc-cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHH Q lcl|Aclame:pro 308 TFDTE-QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNN 380 (508) Q Consensus 308 ~~~~~-~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~ 380 (508) .+... ...|.+.. .+ -+++..++.++......+..+..+...++|....|++|..+|...++. .|+.+.. T Consensus 230 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~--- 306 (411) T protein:vir:81 230 RLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQN--- 306 (411) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHH--- Confidence 00000 00111110 00 012223555554444445666667778899999999999998765443 2222211 Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 381 SMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) Q Consensus 381 ~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi 460 (508) ...++.+|..++..+..-.+.. ++.. ........+.|+++.-+..|.++.++...+++.+|+ T Consensus 307 ----------~~f~~~~l~P~~~~ie~~l~~~-ll~~-------~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~ 368 (411) T protein:vir:81 307 ----------LAFYVDTLLYVLKQYEEEITYK-ILSN-------DLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGI 368 (411) T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhh-cCCh-------hhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCC Confidence 1123333444433332221111 1100 001123457778887778899999999999999999 Q ss_pred CCHHHHHHhcCCCCHH-HHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 461 LSKQTFLQRNYGMTDE-QAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 461 ~s~et~l~~~~~~~de-ea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+.-+++... |+..- ..++.+.. .. ..+-+..+.-...+|| T Consensus 369 ~t~NE~R~~~-gl~p~~ggD~~~~~--~n----~~pl~~~~~~~~kgGd 410 (411) T protein:vir:81 369 MTPNEARDYL-DMPADDYGNNLMAN--GN----YIPLSMLGANYGKGGD 410 (411) T ss_pred cCHHHHHHHh-CCCCCCCCCeeeec--cC----ccchhhhhhhhccCCC Confidence 9999988653 44331 11111100 00 0000011111123444 No 135 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=98.52 E-value=3.7e-07 Score=55.83 Aligned_cols=482 Identities=11% Similarity=0.059 Sum_probs=197.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHH-- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAK-- 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~-- 78 (508) |++ +++.+= |+..-+--.-.+-.-+...=-.....+....++|+..|.--.+. ..+++ +..+..=+.+++.|| T Consensus 1 m~~--~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~-~tr~t-~~~~~~w~~s~t~~k~~ 75 (599) T protein:vir:31 1 MST--DIKTLQ-KMLEGRDDDRAFIDELVVLFTNMENARAQKDREDKELMDYIDAT-DTRKT-SNSKLPFKNSTTINKLA 75 (599) T ss_pred Ccc--chHHHH-HHhhccCchHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhh-ccccc-ccCCCCcccccchHHHH Confidence 544 222211 11110000000000000000011334556677777665321110 01111 222222233344443 Q ss_pred HHHHHHHHhhhc----Cc--ceEee--CCcH------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe---- Q lcl|Aclame:pro 79 TAARRIASVVFN----EK--AEIHV--KDNN------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID---- 140 (508) Q Consensus 79 ~iv~~~A~ll~~----e~--~~i~~--~~~~------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d---- 140 (508) .+++.+..++++ .. +.+.. .+++ ..+++++.-|...+|...+...+.+-..+|.++-+.-+. T Consensus 76 ~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat~~~er~~~ 155 (599) T protein:vir:31 76 HLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAHTRHVKRMT 155 (599) T ss_pred HHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEeeeEEEcce Confidence 234444333332 21 12221 1111 224455666777889999999999999999887665542 Q ss_pred ---C-------CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeec--------CCcEEEEE----EEEEEEeCCceE Q lcl|Aclame:pro 141 ---G-------NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTES--------NQTKYYTL----LEFHQWQDNGSY 198 (508) Q Consensus 141 ---~-------~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~--------~~~~~yt~----lE~h~~~~~g~~ 198 (508) + .+++++.|+|..+|| .-+.+.+..+.|+.+.....+ ..-.+|.. .-.|...+.+-+ T Consensus 156 ~~~d~~v~~~~~~P~~ervsP~Di~~-Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~~~~~~~~~ 234 (599) T protein:vir:31 156 VTAENQVIKNYSGTVTERLSPSDVFW-DVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLREERRTIREA 234 (599) T ss_pred eecccccccccccceEEeecccceee-CCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHhhccCCCcc Confidence 2 247899999999987 234456666666654332100 00011211 000000000000 Q ss_pred EEE--EEEEecCC--cc------ccCccccccccccccCC--------CcceeecCCC---------------cceEEEe Q lcl|Aclame:pro 199 QIT--NELYKSDS--PD------IVGNQVPLSTLPVYKEL--------APQVTISGLQ---------------RPLFAYF 245 (508) Q Consensus 199 ~I~--~~ly~~~~--~~------~lG~~v~l~~~~~~~~l--------~~~~~~~g~~---------------~~~f~~~ 245 (508) ... ..+..++. .+ ..-.+.+..-+.-|.++ ...+..+-+. +-+|.+. T Consensus 235 ~~d~~~~~~g~D~~~~d~~~~~~eY~~~~~VevLeywGd~ydee~d~~~~~~ViTi~g~~~liR~e~np~~~g~~Pyvv~ 314 (599) T protein:vir:31 235 LADGYNGRRKFDSLHKKGYGSMMNYINEGVVEVLTFMGDFYDEENDELWNNYEITVIDRKIIGRKQSKDTWDGSQNLHIA 314 (599) T ss_pred ccchhhhhhhccccccccccchhhhcccchhhhhhhhhhhhcccCCccccceEEEEecCcEEeecccCCCCCCCCCeEEE Confidence 000 00000000 00 00001111112112111 1111111111 1122211 Q ss_pred c-CCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCC Q lcl|Aclame:pro 246 K-TPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDD 323 (508) Q Consensus 246 ~-~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (508) . .| ...|.+|.+.++.+.++++.||.++....+.++ ...+.+-....+-+.|-. +.++- ++ ..++ T Consensus 315 ~~~P-----~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~~eD~~----~~P~~-v~---~~~d 381 (599) T protein:vir:31 315 VYEF-----QKDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVREKGMR----GGPNH-VF---EVEE 381 (599) T ss_pred Eeee-----eccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhcccccccccccccCcc----CCCCc-ce---eecC Confidence 1 12 123678999999999999999999877777654 223311111111111111 11111 11 1121 Q ss_pred CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HH Q lcl|Aclame:pro 324 NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDE-LC 402 (508) Q Consensus 324 ~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~-li 402 (508) ...++.+.|..+.-+...-++.+.......+|.++...|..+.|.+||++++..-..--...+.+.+.|...+.+ |+ T Consensus 382 --~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa~~~~~~~vr~~e~~~lepll 459 (599) T protein:vir:31 382 --TGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQNKVFRRKVKKFERELLTPVL 459 (599) T ss_pred --CCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH Confidence 223566666554444444566666667788999999999988889999999988777666777778888776655 88 Q ss_pred HHHHHHHhhhccccccccccccccccCcceEEEEeCC------------CccCCHHHHHHHHHHHHh----CCCCC---H Q lcl|Aclame:pro 403 QSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDD------------GVFVNKDKQLEEDAKVLA----IGALS---K 463 (508) Q Consensus 403 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d------------~i~~d~~~e~~~~~~~~~----~Gi~s---~ 463 (508) +.++.....+- -..+.....+.-.....=++|+-+| .....++.-.+...+... +++.+ . T Consensus 460 ~~l~e~~~~f~-D~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~~~~q~~~P~~~~ 538 (599) T protein:vir:31 460 NDYLEQGRNHL-DASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGGPLGAALAPHMSR 538 (599) T ss_pred HHHHHHHHhhc-ccccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcccCCCccchhhHH Confidence 88887765421 1111111111100000012222111 011112222222222221 12222 2 Q ss_pred HH---HH-----HhcCCC-------CHHHHHHHHHHHHHh--ccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 464 QT---FL-----QRNYGM-------TDEQAAEELAKIQSE--APTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 464 et---~l-----~~~~~~-------~deea~~e~~ri~~E--~~~~~~~~~~~~~~~~~~g~ 508 (508) .. .+ .++++. .+.|.+..+.+++-+ +.... .....|+..-| T Consensus 539 k~l~~~l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~----~~~~~~~~~~~ 596 (599) T protein:vir:31 539 TKLFNAVEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQTEETAL----TQEEVGGPTTD 596 (599) T ss_pred HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHhHhhhh----hhhhcCCCCcc Confidence 11 11 112222 112222222222211 11111 11122222222 No 136 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=98.49 E-value=4.5e-07 Score=55.39 Aligned_cols=449 Identities=12% Similarity=0.128 Sum_probs=200.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.-=. .++-|.+- ++++-.+ .+..++..-...|+.+|.---|.+-.....+......++-=.-+... T Consensus 1 ~~~~~-~~~~~~~~--------~~~~r~~----~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a 67 (535) T protein:vir:94 1 MASSQ-KREGFAEN--------GAKAVYD----ALKNDRNSYETRAENCAKYTIPSLFPKDSDNASTDYTTPWQAVGARG 67 (535) T ss_pred CCchh-hhhhHHHH--------HHHHHHH----HHHHHhhHHHHHHHHHHHHhccccCCCCCCccccccCCcccccHHHH Confidence 44322 22222111 1111111 12233444466777776544342221222222222222323455556 Q ss_pred HHHHHHhhhcC--c--c--eEeeCCc------------HHHHHHHHH-------HHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 81 ARRIASVVFNE--K--A--EIHVKDN------------NEADKFLND-------VLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 81 v~~~A~ll~~e--~--~--~i~~~~~------------~~~~~~l~~-------~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) ++.+|+.|++- | + ++.+++. +..+++|.+ .+..++|...+.++..+....|.+.+ T Consensus 68 ~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l 147 (535) T protein:vir:94 68 LNNLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALL 147 (535) T ss_pred HHHHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeE Confidence 66666555432 2 2 2223221 123334433 46678999999999999999999887 Q ss_pred EEEEeCC-eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe-----------ecCC------cEEEEEEEEEEEeCCc Q lcl|Aclame:pro 136 RPYIDGN-HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT-----------ESNQ------TKYYTLLEFHQWQDNG 196 (508) Q Consensus 136 ~~~~d~~-~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~-----------~~~~------~~~yt~lE~h~~~~~g 196 (508) .+-.+.+ .+.+..+|-.+++ +..| +|++..+++..++... ...+ -.+|+++... .+++ T Consensus 148 ~~~~~~~~~~~f~~~pl~~y~-v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~--~~~~ 224 (535) T protein:vir:94 148 YIPEPEGTYNPMKLYRLSSYV-VQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLD--EESG 224 (535) T ss_pred eeccCcCcccceEEEEcCeEE-EeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEee--CCCC Confidence 5544443 3567788888866 4444 5666565543332210 0001 1234333221 2234 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) +|.+.+++ + |..++... . + .|...-+|..++ =+...++.+|+|-...+.+-++.|+. T Consensus 225 ~~~~~~e~---~-----g~~~~~~~-~-------~---~g~~~~P~~~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (535) T protein:vir:94 225 EYLKYEEI---D-----GVEVEGTD-A-------S---YPVDACPYIPVR----MVRIDGESYGRSYCEEYLGDLRSLEN 281 (535) T ss_pred cEEEEEEe---c-----Ceeecccc-c-------c---CccccCCceeee----eeecCCCccccchHHHHHHHHHHHHH Confidence 44432221 1 22221111 0 0 122111222221 12233677899999999999999997 Q ss_pred HHHHHHHH-HHhccceeeechHHhcCCCCCCcc-C-CcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 THDQFIWE-IRLGQKHIAVQPGMLRFDDEHKPT-F-DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFE 353 (508) Q Consensus 277 ~~s~~~~e-~~~~~~~i~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~ 353 (508) .--..... ....++...|+++ +-..+. + +.....+++ .. .++.++..+....+.+...+.++.+.+.|. T Consensus 282 l~~~~l~~~~~a~~~~~lv~p~-----g~~~~~~~~~~~~g~~v~--g~-~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 353 (535) T protein:vir:94 282 LQEAIVKMSMISAKVIGLVNPA-----GITQVRRLTKAQTGDFVS--GR-PEDISFLQLEKAADFSVARAVSEQIEGRLS 353 (535) T ss_pred HHHHHHHHHHHhccCCcccccc-----cccchhhcccCCCceeec--CC-cccceeeecccccchhHHHHHHHHHHHHHH Confidence 54444333 2344555455332 111111 1 111112221 11 121223333333345555666777666665 Q ss_pred HHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcce Q lcl|Aclame:pro 354 VQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLD 432 (508) Q Consensus 354 ~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~e 432 (508) ...=+. ......+...|||||....+...+...-.-.. -..-|..||..++.+....++.+.. +..- T Consensus 354 ~af~~~--~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~--------p~~~-- 421 (535) T protein:vir:94 354 YAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPEL--------PKEA-- 421 (535) T ss_pred HHHhHh--hhccCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--------Chhh-- Confidence 433111 12223444579999999999888888764433 3445567777777766544443321 1111 Q ss_pred EEEEeCCCccC-CHHHHHHHHHHHHh--CCC--------CCHHHHH---HhcCCC-------CHHHHHHHHHHHHHhcc- Q lcl|Aclame:pro 433 IECHFDDGVFV-NKDKQLEEDAKVLA--IGA--------LSKQTFL---QRNYGM-------TDEQAAEELAKIQSEAP- 490 (508) Q Consensus 433 i~i~f~d~i~~-d~~~e~~~~~~~~~--~Gi--------~s~et~l---~~~~~~-------~deea~~e~~ri~~E~~- 490 (508) +.+++--++.. -+.+.++...+... +++ +....++ ....|+ |++|++++.++.++.++ T Consensus 422 v~~~~vs~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~ 501 (535) T protein:vir:94 422 VEPTISTGMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAM 501 (535) T ss_pred ccceEeehHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHH Confidence 22222222211 12222222222221 111 1222222 223344 44676666655444332 Q ss_pred --CCCCCCcccccCCCCCCC Q lcl|Aclame:pro 491 --TDTFEGGRSAILNGGDGE 508 (508) Q Consensus 491 --~~~~~~~~~~~~~~~~g~ 508 (508) .....+...+..+..+.+ T Consensus 502 ~~~~~~~g~~~~~~~~~~~~ 521 (535) T protein:vir:94 502 QNAAASAGAGAGTMATASPE 521 (535) T ss_pred HHHHHHHHHhhhcccccChH Confidence 112222333334444444 No 137 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=98.49 E-value=4.7e-07 Score=55.29 Aligned_cols=452 Identities=11% Similarity=0.084 Sum_probs=189.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.=-++ +.+ ..+++++-.+ .+..++..-...|+.+|.---|.+-.....+.+....++-=.-+... T Consensus 1 ~~~~~~--~~~--------~~~~~~~r~~----~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a 66 (543) T protein:vir:88 1 MAETKR--EGL--------AEEGAKAVYE----RLKNDRVPYETRAENCAKVTIPSLFPKDSDNSSTDYTTPWQAVGARG 66 (543) T ss_pred Cccccc--Ccc--------hHHHHHHHHH----HHHHHHhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHH Confidence 111000 000 0111211111 22334555567777776544442211111222222222222345556 Q ss_pred HHHHHHhhhcC--cc----eEeeCCc------------HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 81 ARRIASVVFNE--KA----EIHVKDN------------NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 81 v~~~A~ll~~e--~~----~i~~~~~------------~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) ++.+|+.|++- |+ ++.+.+. +..+++ +...+..++|...+.++..+....|.+.+ T Consensus 67 ~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l 146 (543) T protein:vir:88 67 LNNLSAKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALI 146 (543) T ss_pred HHHHHHHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceee Confidence 66666555432 22 2223221 112333 34456668899999999999999999975 Q ss_pred EEEEeCCe-eE---EEEEcCCeEEEEEEcC-CCeEEEEEEEEEEEee-----------cCCcEEEEEEEEEE--E--eCC Q lcl|Aclame:pro 136 RPYIDGNH-IK---IAWVRADQFYPLQSNT-NDISEAAIASRTQRTE-----------SNQTKYYTLLEFHQ--W--QDN 195 (508) Q Consensus 136 ~~~~d~~~-~~---i~~v~a~~~~Pi~~d~-~~~~~~~f~~~~~~~~-----------~~~~~~yt~lE~h~--~--~~~ 195 (508) .+--|.+. ++ +..+|-.+++ +..|. |++..++...+..... ..+.+.|..+++++ + .+. T Consensus 147 y~~~~~~~~~~~~~~~~~pl~~y~-v~~d~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V~pr~~~ 225 (543) T protein:vir:88 147 YLPPPDASSNSYNPMKLYTLHNHV-VQRDAFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHIYIDDES 225 (543) T ss_pred eeccCccccceecceEEeEcceEE-EeeCCCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEEEeecCC Confidence 43333332 22 3445556644 44554 4554444433222100 01112222222221 0 111 Q ss_pred ceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHH Q lcl|Aclame:pro 196 GSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIN 275 (508) Q Consensus 196 g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD 275 (508) ++|.. ++.-. |..|+...- .+.+.. .| |..++ =+...++.+|+|-...+.+-++.|+ T Consensus 226 ~~~~~----~~~~~----~~~v~~~~~--------~~~~~e--~P-~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~ 282 (543) T protein:vir:88 226 GDFLS----YQEIE----GVEVDGSDG--------QYPQDA--LP-WIAVR----WTKRDGEHYGRSHVEEYLGDLNSLE 282 (543) T ss_pred Ccccc----ccccc----CeeeecCCC--------cccccc--CC-ceeee----eeecCCCccccchHHHHHHHHHHHH Confidence 11111 11000 111111100 000011 11 11111 1233467899999999999999999 Q ss_pred HHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 DTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEV 354 (508) Q Consensus 276 ~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~ 354 (508) ..--...... ...++...||++....- ....+.....|.+ .. .++..+..+....+.....+.++.+.+.|.. T Consensus 283 ~l~~~~l~~~~~~~~pp~~v~~~g~~~~---~~~~~~~~g~~v~--g~-~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~ 356 (543) T protein:vir:88 283 SLNEAMIKFAMISSKVVGLVNPNGITQV---RRLVKAQTGDFVA--GR-KADIEFLQLEKTADFTVAKSVADAIEARLSY 356 (543) T ss_pred HHHHHHHHHHHHHhcCceeeccccccch---hhcccCCCceeec--CC-CCcceeeecccccchhHHHHHHHHHHHHHHH Confidence 8766665554 46777777765532111 0111112222221 11 1111122222222445566667777666654 Q ss_pred HhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceE Q lcl|Aclame:pro 355 QIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDI 433 (508) Q Consensus 355 ~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei 433 (508) ..=+. .+...++...|||||....+...+...-.-.. -..-|..|+.-++.+....++.+.. +... + T Consensus 357 af~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~--------p~~~--v 424 (543) T protein:vir:88 357 VFMLN--SAVQRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNL--------PQEA--V 424 (543) T ss_pred HHhhh--hhccCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------chhc--e Confidence 33222 12333445579999999999988888764433 3445567776666665444443321 1122 3 Q ss_pred EEEeCCCc-cCCHHHHHHHHHHHHh-CCCCC---------HHHHH---HhcCCCC-------HHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 434 ECHFDDGV-FVNKDKQLEEDAKVLA-IGALS---------KQTFL---QRNYGMT-------DEQAAEELAKIQSEAPTD 492 (508) Q Consensus 434 ~i~f~d~i-~~d~~~e~~~~~~~~~-~Gi~s---------~et~l---~~~~~~~-------deea~~e~~ri~~E~~~~ 492 (508) .+++--++ +..+..+++.+.+... .|.++ ...++ ....|++ ++|++++.++...+++.. T Consensus 425 ~~~~vs~l~~l~r~~~~~~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~ 504 (543) T protein:vir:88 425 EPTVTTGAEALGRGQDLDKLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGL 504 (543) T ss_pred eeeEEecHHHHHHHHHHHHHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHH Confidence 33332222 1123333333322221 12222 22222 2234663 244444333222111100 Q ss_pred ---CCCCcccccCCCCCCC Q lcl|Aclame:pro 493 ---TFEGGRSAILNGGDGE 508 (508) Q Consensus 493 ---~~~~~~~~~~~~~~g~ 508 (508) ...+....+.....++ T Consensus 505 ~~~~~~~~~~~~~~~~~~~ 523 (543) T protein:vir:88 505 NAAAGIGSGVAAQATASPE 523 (543) T ss_pred HHHHHHhhchhhhhccChH Confidence 0000000111111122 No 138 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.47 E-value=5.4e-07 Score=54.94 Aligned_cols=449 Identities=12% Similarity=0.114 Sum_probs=187.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.= +| -- . ...++++-.+ .+..++..-...|+.++.---|-+-....++......++-=+-+... T Consensus 1 m~~-~~--~~----~----~~~~~~~r~~----~lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a 65 (536) T protein:vir:21 1 MAE-KR--TG----L----AEDGAKSVYE----RLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARG 65 (536) T ss_pred Ccc-hh--hc----h----hHHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHH Confidence 111 00 00 0 0011221111 12223334456677666544332221222222222223333455566 Q ss_pred HHHHHHhhhcC--c--c--eEeeCCcH------------HHH-------HHHHHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 81 ARRIASVVFNE--K--A--EIHVKDNN------------EAD-------KFLNDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 81 v~~~A~ll~~e--~--~--~i~~~~~~------------~~~-------~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) ++.+|+.|++- | + ++.+.+.+ ..+ +.+...+..++|...+.++..+....|.+.+ T Consensus 66 ~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l 145 (536) T protein:vir:21 66 LNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLL 145 (536) T ss_pred HHHHHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeE Confidence 66666655432 2 2 22222211 122 2445567778999999999999999998886 Q ss_pred EEEEeCC--eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEE------------eecCCcEEEEEEEEEE---Ee-CCc Q lcl|Aclame:pro 136 RPYIDGN--HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQR------------TESNQTKYYTLLEFHQ---WQ-DNG 196 (508) Q Consensus 136 ~~~~d~~--~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~------------~~~~~~~~yt~lE~h~---~~-~~g 196 (508) .+--+.+ ...+..+|-.+++ +..| +|++..++...++.. ....+.+++..+++++ +. +++ T Consensus 146 y~~e~~~~~~~~f~~~pl~~~~-v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~ 224 (536) T protein:vir:21 146 YLPEPEGSNYNPMKLYRLSSYV-VQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSG 224 (536) T ss_pred EEeeCCCCceeeEEEEEcCeEE-EeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCC Confidence 4322322 2347788888877 4445 455544432222111 0111122333333222 11 223 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) +|.+ |..-+ |.+|..... ..++..-||..++ -+...++.+|+|-...+.+-++.|+. T Consensus 225 ~~~~----~~e~~----g~~v~~~~g-----------~~~f~~~P~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (536) T protein:vir:21 225 EYLR----YEEVE----GMEVQGSDG-----------TYPKEACPYIPIR----MVRLDGESYGRSYIEEYLGDLRSLEN 281 (536) T ss_pred cEEE----EeccC----CeeeccccC-----------ccccccCCeeeee----eeecCCCccccchHHHHHHHHHHHHH Confidence 3322 22111 122211110 0011111122111 12234678999999999999999997 Q ss_pred HHHHHHH-HHHhccceeeechHHhcCCCCCCcc--CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 THDQFIW-EIRLGQKHIAVQPGMLRFDDEHKPT--FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFE 353 (508) Q Consensus 277 ~~s~~~~-e~~~~~~~i~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~ 353 (508) .--.... .....++...|+++-+ ..+. .+.....+++ ... +..++..+...-+.....+.++.+.+.|. T Consensus 282 l~~~~l~~~~~a~~~~~lv~p~g~-----~~~~~~~~~~~g~~v~--g~~-~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 353 (536) T protein:vir:21 282 LQEAIVKMSMISSKVIGLVNPAGI-----TQPRRLTKAQTGDFVT--GRP-EDISFLQLEKQADFTVAKAVSDAIEARLS 353 (536) T ss_pred HHHHHHHHHHHHhcCCcccCcccc-----cchhhhccCCCcceec--CCc-ccceeeeccccccchHHHHHHHHHHHHHH Confidence 6544444 3345555555533221 1111 1111111221 111 11122223333334445566666666664 Q ss_pred HHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccccccccccccCcce Q lcl|Aclame:pro 354 VQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLD 432 (508) Q Consensus 354 ~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~e 432 (508) ...=+. .+...++...|||||....+...+...-.-..+ ..-|..|+.-++.+....++.+.. +...++ T Consensus 354 ~af~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~--------p~~~v~ 423 (536) T protein:vir:21 354 FAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPEL--------PKEAVE 423 (536) T ss_pred HHHhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--------Chhhcc Confidence 433222 122234445799999999999888777644333 334455676666665443333221 111122 Q ss_pred EEEEeCCCccC-CHHHHHHHHHHHHh--CCC--------CCHHHHH---HhcCCC-------CHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 433 IECHFDDGVFV-NKDKQLEEDAKVLA--IGA--------LSKQTFL---QRNYGM-------TDEQAAEELAKIQSEAPT 491 (508) Q Consensus 433 i~i~f~d~i~~-d~~~e~~~~~~~~~--~Gi--------~s~et~l---~~~~~~-------~deea~~e~~ri~~E~~~ 491 (508) +++. -++.. .+.++++...+... +++ +....++ ....|+ |++|++++.++.+++++. T Consensus 424 ~~~v--s~l~~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~ 501 (536) T protein:vir:21 424 PTIS--TGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGM 501 (536) T ss_pred ceEE--ecHHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHH Confidence 3322 22321 22333333322211 121 1222222 334566 345555555433222111 Q ss_pred C----------------CCCCcccccCCCCCCC Q lcl|Aclame:pro 492 D----------------TFEGGRSAILNGGDGE 508 (508) Q Consensus 492 ~----------------~~~~~~~~~~~~~~g~ 508 (508) . .++..+......+-.. T Consensus 502 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 534 (536) T protein:vir:21 502 DNGAAALAQGMAAQATASPEAMAAAADSVGLQP 534 (536) T ss_pred HHHHHHHHHHHHHHHhcChhhHHhhhhccccCC Confidence 0 0000000000000000 No 139 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=98.46 E-value=5.7e-07 Score=54.82 Aligned_cols=402 Identities=11% Similarity=0.086 Sum_probs=165.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) ||||+++ |++.... .+..... ..+..+.-+ .+.-|... ..|.... ....+..+ T Consensus 1 Mg~~~~l---~~~~~~~-----~~~~~~~--------~~~~~~~~~-~~~~~~~~------~~g~~v~-~~~al~~~~v~ 56 (457) T protein:vir:62 1 MGFWSAL---FGRGHSP-----ALDAAEG--------RAWEPYDPS-IYNLGATA------SSGERVT-PHDALQVSAVF 56 (457) T ss_pred Cchhhhh---hcccccc-----ccccccc--------cccccchhh-hhhccccc------cCCceec-hHHhhccHHHH Confidence 9999864 3321111 0000000 000000101 01111110 0111100 00011111 Q ss_pred ---HHHHHHHHHhhhcCcceEeeCCcH---HH-HHHHHHHHH-hh---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee-E Q lcl|Aclame:pro 78 ---KTAARRIASVVFNEKAEIHVKDNN---EA-DKFLNDVLE-DN---DFKNKFEEALEKGVALGGFAMRPYIDGNHI-K 145 (508) Q Consensus 78 ---~~iv~~~A~ll~~e~~~i~~~~~~---~~-~~~l~~~l~-~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~ 145 (508) ..|++..|++ |+.+.-..+. .. .-.+..++. .| .....++.++...+..|.+++.+..++|++ . T Consensus 57 ~~i~~ia~~iA~l----p~~~~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~g~~~~ 132 (457) T protein:vir:62 57 ASVRLLSETIATL----PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAG 132 (457) T ss_pred HHHHHHHHhHhhC----ceEEEEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEE Confidence 4455555544 4444321111 00 001222221 11 233445556777788899998887776665 4 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +..++|+++-+.....+... +.....+++...|...+ +..++. T Consensus 133 l~~l~p~~v~v~~~~~~~~~------------------~~~~~~y~~~~~g~~~~------------------~~~~~~- 175 (457) T protein:vir:62 133 LDVLDPTKIHVHMVMVDGLR------------------RKVFEAYDIDADGNEVL------------------LGWFTP- 175 (457) T ss_pred EEEEcCcceEEEEeccCCcc------------------ceeEEEEEEccCCceeE------------------EEeeCc- Confidence 56677777654321111110 00101111111111000 000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFD 302 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~ 302 (508) .+ +.+++.+-++ +...|+|-+.-+...|.....+-....+-|+. +.+.-++ +..+ + T Consensus 176 ----~e----------iih~r~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---s 234 (457) T protein:vir:62 176 ----RD----------VLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM---S 234 (457) T ss_pred ----cc----------eEEecCCCCC----CceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCC---C Confidence 00 2344433222 22468998888887777666555444555665 4554433 2111 1 Q ss_pred CCCCccCCcc-cceEeeecC-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHH Q lcl|Aclame:pro 303 DEHKPTFDTE-QNVYVGVLS-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEV 376 (508) Q Consensus 303 ~~~~~~~~~~-~~~~~~~~~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 376 (508) ++....+... .+.|.+... + -+++..++.++......++.+..+.....|....|++|..+|+...+..++..+ T Consensus 235 ~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~ 314 (457) T protein:vir:62 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) T ss_pred HHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchH Confidence 1111000000 001111100 0 012233555555444456677777778899999999999998776654433222 Q ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 377 VSNNSMTY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKV 455 (508) Q Consensus 377 ~~~~~~l~-~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~ 455 (508) .......+ .++.-+...++.+|...+ +.... .....+.|+++.-+..|..+.++...++ T Consensus 315 eq~~~~f~~~~l~P~~~~ie~~ln~~L------------~~~~~--------~~~~~i~fd~~~l~~~d~~~r~~~~~~~ 374 (457) T protein:vir:62 315 AEQNIAFTMFSLRPWLERIEAGFNRLL------------FAETA--------DRFRFVKFNLDEIKRGAPKERMELWSLG 374 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------------cCccc--------cCceEEEeechhhhccCHHHHHHHHHHH Confidence 22222222 223333333333333211 11000 0123466777776677999999999999 Q ss_pred HhCCCCCHHHHHHhc--CCCCHHHHHHHH-----HHH---HHhcc---CCC-------C--CCcccccCCCCCCC Q lcl|Aclame:pro 456 LAIGALSKQTFLQRN--YGMTDEQAAEEL-----AKI---QSEAP---TDT-------F--EGGRSAILNGGDGE 508 (508) Q Consensus 456 ~~~Gi~s~et~l~~~--~~~~deea~~e~-----~ri---~~E~~---~~~-------~--~~~~~~~~~~~~g~ 508 (508) +.+|+|+.-+++... +-+.+-.+.+.+ ..+ .+.++ ... + .....+..++.|++ T Consensus 375 ~~~G~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 449 (457) T protein:vir:62 375 LQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) T ss_pred HhCCCcCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccc Confidence 999999999998753 223221111111 000 00000 000 0 01111112222222 No 140 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.45 E-value=5.9e-07 Score=54.74 Aligned_cols=459 Identities=12% Similarity=0.068 Sum_probs=179.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHh---cCCCccccC------ccC-CCcccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYY---SDKLQYIHY------QAS-DGIKKKRL 70 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y---~g~~~~~~~------~~~-~~~~~~~~ 70 (508) =++-..|+..++ . ..+ .+......|+..| ...+.-..+ +.. +.....+. T Consensus 23 ~~~~~~l~~~~~----~---------~~~--------~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 81 (641) T protein:vir:94 23 DRIGGVVISKWQ----E---------SRD--------KRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDADWRH 81 (641) T ss_pred hhHHHHHHHHHH----H---------HHH--------hhcchHHHHHHHHHHhhcchhhhhhcccccccccccchhcccc Confidence 122222222221 1 110 1112223444443 332221111 111 11122344 Q ss_pred ccccchHHHHHHHHHHhhh----cCcceEeeC----CcHH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVF----NEKAEIHVK----DNNE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPY 138 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~----~e~~~i~~~----~~~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~ 138 (508) ++..+-+...++.+++-|+ ..+.-|.+. +++. ++++++..+.+++|...+...+.+++.+|.++++++ T Consensus 82 ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~iv~~~ 161 (641) T protein:vir:94 82 RINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVSTYRLG 161 (641) T ss_pred cccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCceEEEee Confidence 5556666555555555444 333334431 1221 345666677788889999999999999999999998 Q ss_pred EeC-----------------------------CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEE-EEeec---CCcEEEE Q lcl|Aclame:pro 139 IDG-----------------------------NHIKIAWVRADQFYPLQSNTNDISEAAIASRT-QRTES---NQTKYYT 185 (508) Q Consensus 139 ~d~-----------------------------~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~-~~~~~---~~~~~yt 185 (508) |+- ..++++.+++..+++ ..+++.....|+... ++.+- ....+|- T Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~--dps~~~~~~~f~~~r~t~~t~~~l~~eg~~~ 239 (641) T protein:vir:94 162 WDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWL--DTSGGKNTGTFVRLRHTREELHELVTSGYYD 239 (641) T ss_pred hhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheee--cCCCCcccccceehhhhHHHHHHHHhcCCCC Confidence 851 123556666666653 223444344443211 10000 0000110 Q ss_pred E--------EEEEEEe--C-----CceEEEEEEEEecCCccccCccccccccccccCCCcceee--cCC----CcceEEE Q lcl|Aclame:pro 186 L--------LEFHQWQ--D-----NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI--SGL----QRPLFAY 244 (508) Q Consensus 186 ~--------lE~h~~~--~-----~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~--~g~----~~~~f~~ 244 (508) . .++. +. + .+...-..++|+-.. +-.+...++..+ +......... .+. +.| |.. T Consensus 240 ~d~v~~~~~~~~~-~~~~d~~~d~~~~~~~~~~~~e~~g-d~~~d~~~~~~~--~~~~~g~~il~~~~~~~~d~~P-f~~ 314 (641) T protein:vir:94 240 LDLTQVEQYVDYK-FADPDTPKDVNGTDTSGWDIIEYYG-PLLVEGVQFWCV--HAVFYGKQLIRLSDSKYWCGSP-FVT 314 (641) T ss_pred hhhcchhhccccc-ccccccccccccccccccceeeeee-eeccCCCceeeE--EEEEeCCEEeecccccccCcCC-eEE Confidence 0 0000 00 0 000000000000000 000000000000 0000000000 110 112 332 Q ss_pred ecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccceeeechHHhcCCCCCCccCCcccceEeeecCCC Q lcl|Aclame:pro 245 FKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDD 323 (508) Q Consensus 245 ~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (508) ++. ....++.+|.|....+.+.++.+|...-..+..+. ...+...++.+.+-. +... .+.++..++ +.. T Consensus 315 ~r~----~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~-~~~l-~~~PG~ii~--~~~-- 384 (641) T protein:vir:94 315 TTL----LPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILK-REDV-KAKPGAVFK--VAQ-- 384 (641) T ss_pred ecc----eecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeeccccccc-ccee-eccCCccee--eCC-- Confidence 221 11235779999999999999999998888887765 445555554432211 1100 111111111 111 Q ss_pred CCCCcceEee---ccCCHHHHHHHHHHHHHHHHHHhCCCc--hhccccccccchHHHHHHHHHHHHhhHHHHHHHHH-HH Q lcl|Aclame:pro 324 NNGLGVKDMT---TPIRTVQYKDAIDHFIKEFEVQIGLST--GTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVE-KA 397 (508) Q Consensus 324 ~~~~~i~~~~---~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~-~a 397 (508) .+ .++.++ ++..+. ...++.+-..+....+.+. +......+...|||||....+........+.+.|. .. T Consensus 385 ~~--~v~pl~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~ 460 (641) T protein:vir:94 385 HG--SLQPIDMGRQDFVVT--YQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSS 460 (641) T ss_pred CC--cceeecCCccccchh--HHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 133322 222221 2233333233333332221 11111112235999999988888888888888887 57 Q ss_pred HHHHHHHHHHHHhhhccccccccccc------cccccCcceEEEEeCCCccCCHHHH------HHHHHHHHh-CCCCCHH Q lcl|Aclame:pro 398 IDELCQSIFELANAGALFDDGKPLFT------LDSASQPLDIECHFDDGVFVNKDKQ------LEEDAKVLA-IGALSKQ 464 (508) Q Consensus 398 l~~li~~i~~l~~~~~~~~~~~~~~~------~~~~~~~~ei~i~f~d~i~~d~~~e------~~~~~~~~~-~Gi~s~e 464 (508) |..|++.++.+...+.+.+.....+. +..+.++.+++.+|+- ++....+. ++...+..+ .|..+. T Consensus 461 l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~i-v~l~~~q~~~~~~~i~~l~~~~~~~a~~P~- 538 (641) T protein:vir:94 461 TLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKF-LALGANYVVERERMVTDLLQLLDISGRVPQ- 538 (641) T ss_pred HHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccceeeeeeE-eecchhHHHHHHHHHHHHHHHHHHhhcChh- Confidence 88899988888766554433222221 2233334455555543 33332221 222222221 111110 Q ss_pred HHHHhcCCCCHHHHHHHHHHHH-----------------------HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDEQAAEELAKIQ-----------------------SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 465 t~l~~~~~~~deea~~e~~ri~-----------------------~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..+.++ +.+-+++.+.. +|+.+... .-+-+..++.-++ T Consensus 539 --v~d~~d~--~~~~~~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~~~q~~~~-~~a~~~~~~~~~~ 600 (641) T protein:vir:94 539 --IGQSLDY--ALILEDLLRQMRFTDPMRYIKKAEAPPAAPPIAPAEPGALPP-EMMNSVGGGLNDQ 600 (641) T ss_pred --hhhcCCH--HHHHHHHHHHhCCCCchhhccCccCchhHHHHHHHHHHHHHH-HHHHHHHhhhHHH Confidence 1111111 11111111100 00000000 0000000001111 No 141 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=98.45 E-value=6.2e-07 Score=54.62 Aligned_cols=432 Identities=11% Similarity=0.106 Sum_probs=184.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc--CCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA--SDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--~~~~~~~~~~~~~n~~~ 78 (508) |.+ ++-++.. ..++..-...|+.+|.--.|.+-... ..+......++-=.-+. T Consensus 1 m~~-----------------~~r~~~L--------~~~R~~~e~~w~e~~~~tlP~~~~~~~~~~~~~~~~~~~~dstg~ 55 (522) T protein:vir:10 1 MKA-----------------RERYNQL--------TTARQMFLDKAVECSELTLPYLIDDDISSRPNHKSLTVPWQSVGA 55 (522) T ss_pred Cch-----------------HHHHHHH--------HHHhhHHHHHHHHHHHHhhhcccCCCCCCCcccccccccccchHH Confidence 221 1111111 22333445666666653333221111 11111111222223455 Q ss_pred HHHHHHHHhhhcC--c-----ceEeeCCcH-----------HHHHHH-------HHHHHhhhHHHHHHHHHHHHhhcCCE Q lcl|Aclame:pro 79 TAARRIASVVFNE--K-----AEIHVKDNN-----------EADKFL-------NDVLEDNDFKNKFEEALEKGVALGGF 133 (508) Q Consensus 79 ~iv~~~A~ll~~e--~-----~~i~~~~~~-----------~~~~~l-------~~~l~~n~f~~~~~~~~~~a~~~G~~ 133 (508) ..++.+|+-|.+- | +++.+++.+ .++++| ...+..++|...+.++..+....|.+ T Consensus 56 ~a~~~LAa~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a 135 (522) T protein:vir:10 56 KCCVTLAAKLMLAVLPPQTSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNA 135 (522) T ss_pred HHHHHHHHHHHHhhcCCCCccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCce Confidence 5566665555432 1 233333211 123333 34567789999999999999999998 Q ss_pred EEEEEEeCCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEE--------ee------cCCc------EEEEEEEEEEE Q lcl|Aclame:pro 134 AMRPYIDGNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQR--------TE------SNQT------KYYTLLEFHQW 192 (508) Q Consensus 134 ~~~~~~d~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~--------~~------~~~~------~~yt~lE~h~~ 192 (508) .+ |.+.+.+ ..+|-.+++ +..| +|++..++....+.. .+ ...+ ..|++++.. T Consensus 136 ~l--y~~~~~~--~~~pl~~y~-v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~-- 208 (522) T protein:vir:10 136 LI--FMGKDGL--KTFPLTRYV-INRDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLD-- 208 (522) T ss_pred eE--EEcCCCc--eEEEcceEE-EeeCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEee-- Confidence 74 6776654 466777765 4455 455655444333220 00 0011 222222211 Q ss_pred eCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHH Q lcl|Aclame:pro 193 QDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLD 272 (508) Q Consensus 193 ~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid 272 (508) .+.+.|...++++ |..++... . ..|...-+|..++ =+...++.+|+|--..+.+-++ T Consensus 209 ~~~~~~~~~~~~~--------~~~~~~~~--------s---~~g~~~~P~~~~R----w~~~~ge~YGrgp~~~~l~D~k 265 (522) T protein:vir:10 209 KSSGRWVWHQEAF--------DKIIPDSR--------S---TAPKNASPWLPLR----FNTVDGEDYGRGRVEEFLGDLK 265 (522) T ss_pred ccCCceEEEEccC--------Cccccccc--------c---ccccccCCceeee----eeecCCCccccchHHHHHHHHH Confidence 1112222111111 11111110 0 0121111222211 1233467899999999999999 Q ss_pred HHHHHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHH Q lcl|Aclame:pro 273 DINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFI 349 (508) Q Consensus 273 ~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l 349 (508) .|+..--...... ...++...|+++.+... ....+.....+. ... .+ .+..++ ...+.....+.++.+. T Consensus 266 ~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~~---~~l~~~~~~~~v--~g~-~~--~v~~~~~~~~~d~~~~~~~i~~~~ 337 (522) T protein:vir:10 266 SLDGLSQSLIEGAAAASKVVFLVSPSSTTKP---ATIAKAGNGAIV--QGR-PE--DVAVIQVGKTADFSTAANMATAIE 337 (522) T ss_pred HHHHHHHHHHHHHHHhcCCceeecccccccc---ccccCCCCccee--cCC-Cc--cceeecccccccchHHHHHHHHHH Confidence 9997655555544 46777777765433211 111122222222 111 11 132332 1122333455566665 Q ss_pred HHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccccccccccccc Q lcl|Aclame:pro 350 KEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDSAS 428 (508) Q Consensus 350 ~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~ 428 (508) +.|....-+. +...+...|||||....+...+...-.-..+ ..-|..||.-++.+....++.+..-... . T Consensus 338 ~ri~~aFl~~----~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~----~- 408 (522) T protein:vir:10 338 KRLLEAFLVM----NVRNAERVTAEEVRLTQLELEQQLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDI----V- 408 (522) T ss_pred HHHHHHHhhc----cCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc----c- Confidence 5554433111 1223456799999999999888888754443 5556677777777766555444321110 0 Q ss_pred CcceEEEEeCCCccCCHHHHHHHHHHHHhC--CCCCHH---------HHH---HhcCCC-------CHHHHHHHHHHHHH Q lcl|Aclame:pro 429 QPLDIECHFDDGVFVNKDKQLEEDAKVLAI--GALSKQ---------TFL---QRNYGM-------TDEQAAEELAKIQS 487 (508) Q Consensus 429 ~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~--Gi~s~e---------t~l---~~~~~~-------~deea~~e~~ri~~ 487 (508) . ...|++-..+ .+.++++........ .++.++ .++ ....|+ |+||+.++-++.++ T Consensus 409 ~--~~~v~~is~L--araq~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~ 484 (522) T protein:vir:10 409 R--PTIVAGVNAL--GRGQDRESLTAFVGTIAQTLGPEALMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQ 484 (522) T ss_pred c--cccccchhHH--HHHHHHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHH Confidence 0 1112222211 222232222221100 111122 222 223454 34454433322222 Q ss_pred hccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 488 EAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 488 E~~~~~~~~~~~~~~~~~~g~ 508 (508) .++...-...+....++.-+| T Consensus 485 ~~~~~~~~~~a~~~~~~~~~~ 505 (522) T protein:vir:10 485 QAAQQSLVDQAGQMTGSPLMD 505 (522) T ss_pred HHHHHHHHHHHHHHhcccccC Confidence 211100000000000001111 No 142 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.42 E-value=7.1e-07 Score=54.28 Aligned_cols=449 Identities=11% Similarity=0.112 Sum_probs=189.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |.= +| --+ ...++++-.+ .+..++..-...|+.++.--.|-+-....++......++-=+-+... T Consensus 1 m~~-~~--~~~--------~~~~~~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a 65 (536) T protein:vir:10 1 MAE-KR--TGL--------AEDGAKSVYE----RLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARG 65 (536) T ss_pred Ccc-hh--hch--------hHHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHH Confidence 111 00 000 0011111111 12223444466677766544342222222222222223333455666 Q ss_pred HHHHHHhhhcC--c--c--eEeeCCcH------------HHH-------HHHHHHHHhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 81 ARRIASVVFNE--K--A--EIHVKDNN------------EAD-------KFLNDVLEDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 81 v~~~A~ll~~e--~--~--~i~~~~~~------------~~~-------~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) ++.+|+.|++- | + ++.+.+.+ ..+ +.+...+..++|...+.++..+....|.+.+ T Consensus 66 ~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l 145 (536) T protein:vir:10 66 LNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLL 145 (536) T ss_pred HHHHHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeE Confidence 66666655432 2 2 22222211 122 2445567778999999999999999998886 Q ss_pred EEEEeCC--eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEE------------eecCCcEEEEEEEEEE---Ee-CCc Q lcl|Aclame:pro 136 RPYIDGN--HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQR------------TESNQTKYYTLLEFHQ---WQ-DNG 196 (508) Q Consensus 136 ~~~~d~~--~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~------------~~~~~~~~yt~lE~h~---~~-~~g 196 (508) .+--+.+ ...+..+|-.+++ +..| +|++..++...++.. ....+.+++..+++++ +. +++ T Consensus 146 y~~e~~~~~~~~~~~~pl~~~~-v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~ 224 (536) T protein:vir:10 146 YLPEPEGSNYNPMKLYRLSSYV-VQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASG 224 (536) T ss_pred EEeeCCCCceeeEEEEEcCeEE-EeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCC Confidence 4322322 2347788888877 4445 455544432222210 0111223333333322 11 223 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) +|.+.+++ + |..|+.... ..++..-||..++ -+...++.+|+|-...+.+-++.|+. T Consensus 225 ~~~~~~e~----~----g~~v~~~~g-----------~~~f~~~P~i~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (536) T protein:vir:10 225 EYLRYEEV----E----GMEVQGSDG-----------TYPKEACPYIPIR----MVRLDGESYGRSYIEEYLGDLRSLEN 281 (536) T ss_pred cEEEEEee----c----Ccccccccc-----------ccccccCCceeee----eeecCCCccccchHHHHHHHHHHHHH Confidence 33222111 1 222211110 0111111122111 12234678999999999999999997 Q ss_pred HHHHHHH-HHHhccceeeechHHhcCCCCCCcc--CCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 THDQFIW-EIRLGQKHIAVQPGMLRFDDEHKPT--FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFE 353 (508) Q Consensus 277 ~~s~~~~-e~~~~~~~i~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~ 353 (508) .--.... .....++...|+++-+ ..+. .+.....+++ ... +..++..+...-+.....+.++.+.+.|. T Consensus 282 l~~~~l~~~~~a~~~~~lv~p~g~-----~~~~~~~~~~~g~~v~--g~~-~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 353 (536) T protein:vir:10 282 LQEAIVKMSMISSKVIGLVNPAGI-----TQPRRLTKAQTGDFVT--GRP-EDISFLQLEKQADFTVAKAVSDAIEARLS 353 (536) T ss_pred HHHHHHHHHHHHhcCCcccCcccc-----cchhhhccCCCcceec--CCc-ccceeeeccccccchHHHHHHHHHHHHHH Confidence 6544444 3345555555533221 1111 1111111221 111 11122223333334445566666666664 Q ss_pred HHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccccccccccccCcce Q lcl|Aclame:pro 354 VQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLD 432 (508) Q Consensus 354 ~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~e 432 (508) ...=+. .+...++...|||||....+...+...-.-..+ ..-|..|+.-++.+....++.+.. +...++ T Consensus 354 ~af~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~--------p~~~v~ 423 (536) T protein:vir:10 354 FAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPEL--------PKEAVE 423 (536) T ss_pred HHHhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--------Chhhcc Confidence 433222 122234445799999999999888777644333 334455676666665443333211 111122 Q ss_pred EEEEeCCCccC-CHHHHHHHHHHHHh--CCC--------CCHHHHH---HhcCCC-------CHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 433 IECHFDDGVFV-NKDKQLEEDAKVLA--IGA--------LSKQTFL---QRNYGM-------TDEQAAEELAKIQSEAPT 491 (508) Q Consensus 433 i~i~f~d~i~~-d~~~e~~~~~~~~~--~Gi--------~s~et~l---~~~~~~-------~deea~~e~~ri~~E~~~ 491 (508) +++. -++.. .+.++++...+... +++ +....++ ....|+ |++|++++.++.+++++. T Consensus 424 ~~~v--s~l~~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~ 501 (536) T protein:vir:10 424 PTIS--TGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGM 501 (536) T ss_pred ceEE--ecHHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHH Confidence 3322 22321 22233333222211 121 1222222 234566 345665555443322211 Q ss_pred CC--------------CCCcccccCCCCCCC Q lcl|Aclame:pro 492 DT--------------FEGGRSAILNGGDGE 508 (508) Q Consensus 492 ~~--------------~~~~~~~~~~~~~g~ 508 (508) .+ ..+.+.....+.-|= T Consensus 502 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 532 (536) T protein:vir:10 502 DNGAAALAQGMAAQATASPEAMAAAADSVGL 532 (536) T ss_pred HHHHHHHHHHHHHHHhcCchhHHhhhhcccc Confidence 00 000000000000000 No 143 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=98.42 E-value=7.3e-07 Score=54.24 Aligned_cols=390 Identities=13% Similarity=0.124 Sum_probs=163.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcccccc-CCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc--chH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRIS-IDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI--NMA 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~--n~~ 77 (508) ||||.++|.+|.+.-.. + +-....++ ++. .+..++.. ..-....+.... -.+++. .-- T Consensus 7 ~g~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~-------~~~~~~~~--~~~~g~~v~~~~--a~~~~aV~~~v 67 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPV-----D---IGGGQTFTPVNA-------TARDLGII--ISDTGAAVNADA--IMRLDAVAACV 67 (432) T ss_pred CchhhhhHhhcCCcccc-----c---cccccccccCch-------hhhhhccc--ccccCcccchHh--hhcchHHHHHH Confidence 99999999998532211 0 00000000 110 11111111 000011110000 000000 011 Q ss_pred HHHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEE Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIA 147 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~ 147 (508) ..|++..|++ |+.+--.+++ ..+.-+..+|. -| ....-.+.++...+..|.+++.+..++|++ .+. T Consensus 68 ~~Ia~~ia~l----p~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~ 143 (432) T protein:vir:97 68 KLVSQAVAAM----PLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQ 143 (432) T ss_pred HHHHHhhccC----ceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEE Confidence 3455555544 4444221111 01111222221 11 112333445667778899988888877765 466 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) +++|+.+-|+...+|++ .|+. .. .+|... .| +. T Consensus 144 ~l~p~~v~v~~~~~g~~------------------~y~~----~~-~~g~~~----~~-----------------~~--- 176 (432) T protein:vir:97 144 YLANDRLTITTDTKGNT------------------AYRY----RR-TDGQMI----DI-----------------PR--- 176 (432) T ss_pred EEcCcceEEEEcCCCcE------------------EEEE----Ee-cCceEE----EE-----------------cc--- Confidence 78888877653233321 1110 00 011100 00 00 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCC Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDE 304 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~ 304 (508) .+ +.+++.+-. +...|+|-+.-+...|......-....+-|+.| ++..++ |.. + +++ T Consensus 177 --~~----------iih~r~~~~-----dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~-l--~~e 236 (432) T protein:vir:97 177 --QQ----------IWKIMGYSL-----DGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRF-L--TDD 236 (432) T ss_pred --cc----------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCC-C--CHH Confidence 00 122332211 123588888877766655443333333445543 444333 211 1 111 Q ss_pred CCccCCcccceEeee-cCC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHH Q lcl|Aclame:pro 305 HKPTFDTEQNVYVGV-LSD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVS 378 (508) Q Consensus 305 ~~~~~~~~~~~~~~~-~~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~ 378 (508) ....+. ..|.+. +.+ -+++..++.++......+..+..+....+|....|++|..++....+. .+++.+.. T Consensus 237 ~~~~~~---~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~ 313 (432) T protein:vir:97 237 QYDSFS---KKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHHH---HHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHH Confidence 100010 111110 000 012223555555545556677777888899999999999998765432 22222222 Q ss_pred HHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 379 NNSMTY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLA 457 (508) Q Consensus 379 ~~~~l~-~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~ 457 (508) .....+ .++.-..+.++.+|..- ++.... ...+.+.|+++.-+..|..+.++...+++. T Consensus 314 ~~~~f~~~tl~P~~~~ie~~ln~k------------Ll~~~e--------~~~~~~~fd~~~llr~d~~~r~~~~~~~~~ 373 (432) T protein:vir:97 314 QQLGFLTMTLSPWLRRIEQSIALN------------LLTPAE--------RRRYFADFDTSALLRADSAARSSYYSQLVN 373 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh------------ccCccc--------cCceEEEeechhhhccCHHHHHHHHHHHHh Confidence 222211 23333333344333321 111100 012346666666667899999999999999 Q ss_pred CCCCCHHHHHHh--cCCCCHHHHH----H---HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 458 IGALSKQTFLQR--NYGMTDEQAA----E---ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 458 ~Gi~s~et~l~~--~~~~~deea~----~---e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .|+|+.-+++.. +|-+...+.. . =+..+ .++....+ . ++.++.+.+ T Consensus 374 ~G~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~-~~~~~~~~--~--~~~~~~~~~ 428 (432) T protein:vir:97 374 NGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEP--A--SGLGNQQQD 428 (432) T ss_pred CCCCCHHHHHHHhCCCCCCCCcceEeecccccchhhh-cccCCCCC--C--CCCCCcccc Confidence 999999998865 3333221100 0 00111 11111111 1 111111111 No 144 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=98.40 E-value=8.4e-07 Score=53.88 Aligned_cols=389 Identities=12% Similarity=0.118 Sum_probs=165.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccc-cCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc--chH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRI-SIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI--NMA 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~--n~~ 77 (508) ||||.++|.+|.+.-.. + +....-+ .++. .+..++.. ..-....+.... -.+++. .-- T Consensus 7 ~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~-------~~~~~~~~--~s~~g~~v~~~~--al~~~~V~~~i 67 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPV-----D---IGGGQTFTPVNA-------TARDLGII--ISDTGAAVNADA--IMRLDAVAACV 67 (432) T ss_pred cchhhhhHhhcCCcccc-----c---cccccccccCcc-------hhhhhccc--ccccCcccchhh--hhcchHHHHHH Confidence 99999999998643211 0 1000000 0110 01111100 000011110000 000100 011 Q ss_pred HHHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEE Q lcl|Aclame:pro 78 KTAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIA 147 (508) Q Consensus 78 ~~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~ 147 (508) ..|++..|++ |+.+--.+++ ..+.-+..+|. -| ......+.++...+..|.+++.+..++|++ .+. T Consensus 68 ~~Ia~~ia~l----p~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~ 143 (432) T protein:vir:10 68 KLVSQAIAAM----PLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQ 143 (432) T ss_pred HHHHHhhhhC----ceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEE Confidence 4455555544 4444211111 01111223331 11 112334445667788899988887777664 566 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) +++|+++-++..++|++ .|+. +.. +|..+ -|.. T Consensus 144 ~l~~~~v~v~~~~~g~~------------------~y~~----~~~-~g~~~----~~~~-------------------- 176 (432) T protein:vir:10 144 YLANDRLTITTDTKGNT------------------AYRY----RRT-DGQMI----DIPK-------------------- 176 (432) T ss_pred EEcCCceEEEEcCCCcE------------------EEEE----Eec-CceEE----EEcC-------------------- Confidence 78888877653233321 1110 000 11100 0000 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH-HHHh-ccceeeec--hHHhcCCC Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW-EIRL-GQKHIAVQ--PGMLRFDD 303 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v~--~~~~~~~~ 303 (508) ++ +.+++.+-. +...|+|-+.-+...|...... .++.. -|+. +++..++. ..+ ++ T Consensus 177 --~~----------iih~~~~~~-----dg~~G~spi~~~~~~i~~~~~~-~~~~~~~f~ng~~~~gil~~~~~l---~~ 235 (432) T protein:vir:10 177 --QQ----------IWKIMGYSL-----DGENGLSAIRYGAQIFGTAIAA-EAQAARAFRNGQLQSVYYQIDRFL---TD 235 (432) T ss_pred --cc----------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcceEEecCCCC---CH Confidence 00 122332211 1235888888777666554433 33333 3554 34444431 111 00 Q ss_pred CCCccCCcccceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHH Q lcl|Aclame:pro 304 EHKPTFDTEQNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVV 377 (508) Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~ 377 (508) +....+ .+.|.+.. .+ -+++..++.++......+.++..+....+|....|++|..+|+...+. .+++.+. T Consensus 236 e~~~~~---~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e 312 (432) T protein:vir:10 236 DQYDSF---AKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIE 312 (432) T ss_pred HHHHHH---HHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHH Confidence 000000 01111100 00 012234555655555556777778888899999999999998865432 2233333 Q ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 378 SNNSMTY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 378 ~~~~~l~-~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) ......+ .++.-..+.++.+|..- ++.... ...+.+.|+.+.-+..|..+.++.+.+++ T Consensus 313 ~~~~~f~~~tl~P~~~~ie~~ln~k------------L~~~~~--------~~~~~~~fd~~~ll~~d~~~r~~~~~~~~ 372 (432) T protein:vir:10 313 SQQLGFLSMTLSPWLRRIEQSIALN------------LLSPAE--------RRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------------hcCccc--------cCceEEEeechhhhccCHHHHHHHHHHHH Confidence 2222222 23333444444443321 111100 11234566666656679999999999999 Q ss_pred hCCCCCHHHHHHhc--CCCCHHHHHH-------HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRN--YGMTDEQAAE-------ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s~et~l~~~--~~~~deea~~-------e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+|+|+.-+++... |-+...+..- -+..+ .++++.++ ..+.+..+.+ T Consensus 373 ~~G~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~~-~~~~~~~~----~~~~~~~~~~ 428 (432) T protein:vir:10 373 NNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEP----ASGLGNQQQD 428 (432) T ss_pred hCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhhh-cccCCCCC----CCCCCCcccc Confidence 99999999988753 3332211000 01111 11111111 1111111111 No 145 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=98.38 E-value=9.2e-07 Score=53.69 Aligned_cols=399 Identities=13% Similarity=0.137 Sum_probs=172.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|+++.++.++.... ...++-+. .....|.......+. +.... -....--... T Consensus 1 M~~~~~~f~~~~r~~~~------------~~~~~~~~------~~~~~~~g~~~~~~~---v~~~~----al~~~~v~~~ 55 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQ------------VIELNKDD------EKLLEWLGISPSTIS---VKGKN----ALKVATVFAC 55 (429) T ss_pred CchhhhhhcccccCccc------------ccccCCCh------HHHHHHhcCCCCcce---echhh----hhccHHHHHH Confidence 99999888876532211 01111111 111223322222111 11100 0111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWV 149 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v 149 (508) ++.+|+-+-+=|+.+--.+++ ..+..+..+|.. | ....-.+.++...+..|.+++.+..+. |++ .+..+ T Consensus 56 i~~ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i 135 (429) T protein:vir:10 56 IKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPI 135 (429) T ss_pred HHHHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 333443333324444211111 011123344421 1 122335556777888899998887774 443 67778 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+++-+...+.+.+.. ....|. ....+|.. ..|.. T Consensus 136 ~~~~v~v~~~~~~~~~~-------------~~~~~~-----~~~~~g~~----~~~~~---------------------- 171 (429) T protein:vir:10 136 DASKVTVYIDDVGLLNS-------------KTKMWY-----VVNTGGQQ----RVLKP---------------------- 171 (429) T ss_pred cCceeEEEEcCcccccc-------------cceEEE-----EEccCCeE----EEEcc---------------------- Confidence 88887664222222110 000110 00111110 00100 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~ 306 (508) .+ ..+++.+.+. +...|+|.+.-+...|+.....-.....-|+. +++..++ |..+ +++.. T Consensus 172 ~e----------vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l---~~e~~ 234 (429) T protein:vir:10 172 EE----------ILHFKNGITL----DGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL---NEDAK 234 (429) T ss_pred cc----------EEEecCCCCC----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC---CHHHH Confidence 00 2344432211 23458999888888877766554444555665 4555444 1111 11111 Q ss_pred ccCCcc-cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHH Q lcl|Aclame:pro 307 PTFDTE-QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) Q Consensus 307 ~~~~~~-~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~ 379 (508) ..+... ...|.+.. .+ -+++..++.++......+..+..+...++|....|++|..++...++. .++++.... T Consensus 235 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~ 314 (429) T protein:vir:10 235 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 314 (429) T ss_pred HHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 000000 01111110 00 012223555544444456667777778899999999999998755433 222222211 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .++.+|..++..|....+.. ++... .....+.+.|+++.-+..|..+.++...+++.+| T Consensus 315 -------------f~~~~l~P~~~~ie~~ln~k-l~~~~-------~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G 373 (429) T protein:vir:10 315 -------------FYTDTLQATLTMYEQEMTYK-LFLDS-------ELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGG 373 (429) T ss_pred -------------HHHHHHHHHHHHHHHHHHHh-hcChh-------hcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCC Confidence 12333333333332221110 11100 0012245667777766789999999999999999 Q ss_pred CCCHHHHHHhcCCCCH-HHHHHHH-----HHHHHhccCCCCCCccccc---CCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTD-EQAAEEL-----AKIQSEAPTDTFEGGRSAI---LNGGDGE 508 (508) Q Consensus 460 i~s~et~l~~~~~~~d-eea~~e~-----~ri~~E~~~~~~~~~~~~~---~~~~~g~ 508 (508) +|+..+++... |+.+ +...+.+ ..+.. .......++..+. .++++|+ T Consensus 374 ~~T~NE~R~~~-gl~p~~ggD~~~~~~n~~~~d~-~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 374 FLKPNEARSKE-DLPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred CcCHHHHHHHh-CCCCCCCcCeeeecccccchhh-ccccccCCCCCCCCCCCCCCCCC Confidence 99999988653 3322 1111111 11110 0000011111111 2223333 No 146 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.32 E-value=1.3e-06 Score=52.77 Aligned_cols=381 Identities=8% Similarity=0.062 Sum_probs=157.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|++.|.- ...+.+++ ..|..++.+... ...+.... -+...--... T Consensus 1 M~~f~~~~~~-------------------~~~~~~~~------~~~~~~~~~~~~---~~~v~~~~----al~~~~V~~~ 48 (397) T protein:vir:38 1 MPLLKLNKSH-------------------SQGFSLND------PDWVNFLTGGEA---QKYVSADT----ALKNSDIFSL 48 (397) T ss_pred Ccchhhhhcc-------------------cCcccCCc------hhhhhhhcCCcC---CceechHH----hhccHHHHHH Confidence 9998865431 01111121 123333332211 01111000 0111111222 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYPLQ 158 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~Pi~ 158 (508) |+.+|+-+-.=| +.++++ ....++..--..-....-.+.++...+..|.+++.+..|. |. +.+.+++|..+-++. T Consensus 49 v~~ia~~ia~~p--~~~~~~-~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~ 125 (397) T protein:vir:38 49 IMQLSGDLAMVR--YTSESD-RSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPML 125 (397) T ss_pred HHHHHHHHhhCc--cccccc-HHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 344443332223 333222 2222222211111233344556667788898888777764 44 367788888876543 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) ...+.. ..|. +. ....+ .|..+ .++. .+ T Consensus 126 ~~~~~~-----------------~~y~-~~---~~~~~----------------~~~~~---~~~~-----~e------- 153 (397) T protein:vir:38 126 LQDGSG-----------------LIYN-IN---FDEPA----------------IGYME---NVPA-----AD------- 153 (397) T ss_pred cCCCce-----------------EEEE-EE---ecccc----------------cccee---EecC-----cc------- Confidence 222211 0110 00 00000 00000 0010 00 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCcc-cc Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDTE-QN 314 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~~-~~ 314 (508) ..|++.+-++ +...|+|.+..+...|...........+-|+. +.+..++ +..+ +++....+... .. T Consensus 154 ---iih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~---~~e~~~~~~~~~~~ 223 (397) T protein:vir:38 154 ---VIHIRLLSKN----GGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGG---LLDAETRIARSKEI 223 (397) T ss_pred ---EEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC---CHHHHHHHHHHHHH Confidence 2344433222 22469999888888877655544444555565 4444444 1111 11110000000 00 Q ss_pred eEeeecCC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 315 VYVGVLSD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 315 ~~~~~~~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) .+.+-+.+ -+.+..++.++......+..+..+...++|....|+++..++...+...+.++....+ ..++.-. T Consensus 224 ~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~~~~~~---~~~l~P~ 300 (397) T protein:vir:38 224 SKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQISGQY---AKSLNRY 300 (397) T ss_pred HhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHH---HHHHHHH Confidence 00000000 0122345555555556667788888889999999999999987654433222222211 1122222 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh- Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR- 469 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~- 469 (508) ...++..|... ++. +.+..+.| -+-.|.++.++....++..|+|+..+++.. T Consensus 301 ~~~ie~~ln~~------------l~~-------------~~~~~~~~--~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~l 353 (397) T protein:vir:38 301 VQAIVGELNDK------------LHA-------------NISANIRF--AIDAMGDQYASTISSSVKGGTIAGNQARFIL 353 (397) T ss_pred HHHHHHHHHHh------------ccC-------------hhcccccc--cccCCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 22233222211 111 11222223 345678888888889999999999998875 Q ss_pred -cCCCCHHH-HHHHHHHHHHhccCCCCCCcccccC-CCCCCC Q lcl|Aclame:pro 470 -NYGMTDEQ-AAEELAKIQSEAPTDTFEGGRSAIL-NGGDGE 508 (508) Q Consensus 470 -~~~~~dee-a~~e~~ri~~E~~~~~~~~~~~~~~-~~~~g~ 508 (508) .+.+...+ ..-+..-..........+++..+.. +...+| T Consensus 354 g~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~~~ 395 (397) T protein:vir:38 354 QNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSDERGSD 395 (397) T ss_pred CCCCCCCCccccccccccccccccccccCCCCCCCCCCCCCC Confidence 33322111 1000000000000000011100000 011111 No 147 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=98.31 E-value=1.5e-06 Score=52.59 Aligned_cols=373 Identities=12% Similarity=0.085 Sum_probs=153.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+++. +.+ . + ..-...+. ...|...+.+... ...+... ...+..--... T Consensus 1 Mg~~~~~~-~~~-~--------~-------~~~~~~~~----~~~~~~~~~~~~~---~~~v~~~----~al~~~~v~~~ 52 (385) T protein:vir:10 1 MGLLTPRN-FNK-R--------K-------AKNMVYPS----NPAFFTTTVGGMQ---LSYVSAL----SALQNTNVYSV 52 (385) T ss_pred Cccccchh-ccc-c--------c-------cccccccc----chhhhhhhccccC---ccccCHH----HhhccHHHHHH Confidence 99998632 111 0 0 00011110 1112222222111 1111111 11111222344 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) ++.+|+-+-.=|+++. +.. ....|++--..-....-.+.++...+-.|.+++.+..+. +.++|++.+. T Consensus 53 i~~ia~~ia~~p~~v~--~~~-~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~----~~~~p~~~~~----- 120 (385) T protein:vir:10 53 INRIASDVASAHFKTE--NTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQ----- 120 (385) T ss_pred HHHHHHHHhhCceeee--ccc-hhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc----eeEeecCCce----- Confidence 5555555554455543 222 222333211111122233334556666788887654432 2222222211 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) + . . .....+..|... ...+...+ .++ . .+ T Consensus 121 ---v------~-~--~~~~~~~~~~~~-----~~~~~~~~---------------~~~-----~-----~e--------- 149 (385) T protein:vir:10 121 ---I------N-Y--LPGNMGIVYTVL-----ESNDRPQM---------------VLR-----Q-----DQ--------- 149 (385) T ss_pred ---E------E-E--EEcCCceEEEEE-----EcCCceEE---------------EEc-----c-----cc--------- Confidence 0 0 0 001112222110 00010000 000 0 00 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeeec--hHHhcCCCCCCccCCcc-cceE Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAVQ--PGMLRFDDEHKPTFDTE-QNVY 316 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~--~~~~~~~~~~~~~~~~~-~~~~ 316 (508) ..+++..-++. .+...|+|.+.-+...|+.....-....+-|+.| ++.-++. ..+. +++....+... .+.+ T Consensus 150 -iihik~~~~~~--~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~--~~e~~~~~~~~~~~~~ 224 (385) T protein:vir:10 150 -MLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS--DGKDLESAREEFEKAN 224 (385) T ss_pred -EEEeccCCCCc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC--CHHHHHHHHHHHHHHh Confidence 12333211111 1234699998888888876655444445556654 5555542 1111 11111101000 0111 Q ss_pred eeecCC----CCCCCcceEeeccCCHHHHH-HHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 317 VGVLSD----DNNGLGVKDMTTPIRTVQYK-DAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 317 ~~~~~~----~~~~~~i~~~~~dir~e~~~-~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) .+-+.+ -+++..++.++......+.+ +..+...++|....|++|..++....+..+...+.........++.-.. T Consensus 225 ~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~ 304 (385) T protein:vir:10 225 TGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYV 304 (385) T ss_pred CccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHH Confidence 110000 01223455565555455554 5566667899999999999998654332222222211111122222333 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh-- Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR-- 469 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~-- 469 (508) +.++.+|..- +. ..++.++++.-+..|..+.++...+++..|+|+.-+++.. T Consensus 305 ~~ie~~l~~~------------l~--------------~~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g 358 (385) T protein:vir:10 305 NPIVDELRLK------------MN--------------APDLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILT 358 (385) T ss_pred HHHHHHHHHh------------hC--------------CceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 3333333211 00 1246677777777899999999999999999999888763 Q ss_pred cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 ~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .++++++.. .+.. .......+|.++| T Consensus 359 ~~p~p~~~~----~~~~---------~~~~~~~~g~~~d 384 (385) T protein:vir:10 359 RSGFLPDNL----PEFK---------PLTTQVKGGDEGD 384 (385) T ss_pred CCccCCCCC----cccc---------CcccccCCCCCCC Confidence 345543221 1100 0111122333333 No 148 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=98.31 E-value=1.5e-06 Score=52.55 Aligned_cols=400 Identities=11% Similarity=0.053 Sum_probs=165.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) ||+|+++++.+++.. +.......--.+++. ++.-..... .|.... ....+..+ T Consensus 1 Mg~~~~l~~r~~~~~--------~~~~~~~~~~~~~~~----------~~~~~~~~~-----~g~~V~-~~~al~~~~V~ 56 (457) T protein:vir:13 1 MGFWSALFGRGHSPA--------LDGIEARAWEPYDPS----------IYNLGAVAA-----SGETVT-PHDALQVSAVF 56 (457) T ss_pred Cchhhhhhccccccc--------ccccccccccccchH----------HHhhccccc-----CCceec-hHHhhccHHHH Confidence 999887755433211 111110000011111 111000000 111100 01112222 Q ss_pred ---HHHHHHHHHhhhcCcceEeeCCc----HHHHHHHHHHHHh----hhHHHHHHHHHHHHhhcCCEEEEEEEeCCee-E Q lcl|Aclame:pro 78 ---KTAARRIASVVFNEKAEIHVKDN----NEADKFLNDVLED----NDFKNKFEEALEKGVALGGFAMRPYIDGNHI-K 145 (508) Q Consensus 78 ---~~iv~~~A~ll~~e~~~i~~~~~----~~~~~~l~~~l~~----n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~ 145 (508) ..|++..|++ |+.+--... ...+..+..++.. -.....++.++...+..|.+++.+..++|++ . T Consensus 57 ~~v~~Ia~~iA~l----p~~~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~g~~~~ 132 (457) T protein:vir:13 57 ASVRLLSETIATL----PLSTYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQGPNIVG 132 (457) T ss_pred HHHHHHHHhhccC----ceEEEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEE Confidence 3445555543 444432111 1111123333321 1123345556677788899998887777664 5 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +..++|+++-+.....+....- .|. .+.+...|... ....| +. T Consensus 133 l~~l~p~~v~v~~~~~~~~~~~---------------~~~---~y~~~~~~~~~-~~~~~-----------------~~- 175 (457) T protein:vir:13 133 LDVLDPTKIHVHMVMVDGLRRK---------------VFE---AYDIDADGNEV-LLGWF-----------------TP- 175 (457) T ss_pred EEEEccCceEEEEecCCCccce---------------eEE---EEEEecCCcee-eEEee-----------------Cc- Confidence 6667777766542222211111 111 11111111100 00000 00 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFD 302 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~ 302 (508) . -+.+++.+-++ +..+|+|.+.-+...|.....+-....+-|+. +++..++ +..+ + T Consensus 176 ----~----------diih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---s 234 (457) T protein:vir:13 176 ----R----------DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTM---S 234 (457) T ss_pred ----c----------ceEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCC---C Confidence 0 02334433222 22368998887777777655444444445554 4555444 1111 1 Q ss_pred CCCCccCCcc-cceEee-------ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 303 DEHKPTFDTE-QNVYVG-------VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 303 ~~~~~~~~~~-~~~~~~-------~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) ++....+... ...|.+ +-. +++..++.++.+....+..+..+...++|....|++|..+|+...+..++. T Consensus 235 ~e~~~~~~~~~~~~~~g~~nag~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s 312 (457) T protein:vir:13 235 EEGLARAREAWRAANSGVDNAHRVALL--TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGS 312 (457) T ss_pred HHHHHHHHHHHHHHhcCccccCcceec--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccc Confidence 1110000000 001111 001 122345555555444556666677788999999999999987665544333 Q ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHH Q lcl|Aclame:pro 375 EVVSNNSMT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDA 453 (508) Q Consensus 375 ei~~~~~~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~ 453 (508) .+....... ..++.-+...++.+|...+ +.... ...+.+.|++++-+..|..+.++... T Consensus 313 n~eq~~~~f~~~tl~P~~~~ie~~ln~~L------------~~~~~--------~~~~~i~fd~~~l~~~D~~~r~~~~~ 372 (457) T protein:vir:13 313 GLAEQNIAFTMFSLRPWLERIEAGFNRLL------------FAETA--------DRFRFVKFNLDEIKRGAPKERMELWS 372 (457) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cCccc--------cCceeEEeechhhhccCHHHHHHHHH Confidence 222222111 2223333333333332211 11000 01234677777877789999999999 Q ss_pred HHHhCCCCCHHHHHHhc--CCCCHHHHHHHHH-----HH----HHhc--cCCCCCCccccc------CCCCCCC Q lcl|Aclame:pro 454 KVLAIGALSKQTFLQRN--YGMTDEQAAEELA-----KI----QSEA--PTDTFEGGRSAI------LNGGDGE 508 (508) Q Consensus 454 ~~~~~Gi~s~et~l~~~--~~~~deea~~e~~-----ri----~~E~--~~~~~~~~~~~~------~~~~~g~ 508 (508) +++..|+|+.-+++... +-+.+-.+.+..- .+ +.+. .....+++.... .+..|.+ T Consensus 373 ~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 446 (457) T protein:vir:13 373 LGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDE 446 (457) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccc Confidence 99999999999988653 2222211111100 00 0000 000000000000 0001111 No 149 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=98.25 E-value=2.1e-06 Score=51.74 Aligned_cols=437 Identities=11% Similarity=0.096 Sum_probs=176.2 Q ss_pred CChHHHHHHHHH-----HHHHhhhhhhhhHHhhcc-------cccc-CCHHHHHHHHHHHHHhc---CCCccccCccCCC Q lcl|Aclame:pro 1 MGLIQRIKDLFW-----KGAAATGVTGSLSKITDD-------PRIS-IDPDEYVRIQTDLDYYS---DKLQYIHYQASDG 64 (508) Q Consensus 1 m~~~~~ik~~~~-----~~~~~~~~~~~~~~~~~~-------~~i~-~~~~~~~~i~~~~~~Y~---g~~~~~~~~~~~~ 64 (508) -|++.+|..++| |.--.++..+-|...-.. ..-. =++.+..--+.....-. |..++.. .+.+- T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~e-pp~d~ 86 (648) T protein:vir:79 8 RGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEE-PEFDF 86 (648) T ss_pred chhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCcccccc-CCcCH Confidence 788999999888 422222222222221100 0000 02222221111222221 2112211 11111 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHH-HH-HHHHhh---hHHHHHHHHHHHHhhcCCEEEEEEE Q lcl|Aclame:pro 65 IKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKF-LN-DVLEDN---DFKNKFEEALEKGVALGGFAMRPYI 139 (508) Q Consensus 65 ~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~-l~-~~l~~n---~f~~~~~~~~~~a~~~G~~~~~~~~ 139 (508) ....+....-+.....|+.+|.-+.+=+..+...++...... .. .++..| .....+..++.+.+.+|.+|+.+.. T Consensus 87 ~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiR 166 (648) T protein:vir:79 87 NEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSR 166 (648) T ss_pred HHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEe Confidence 111111112244556677777777766767765443221111 11 111211 2334466678888899999988777 Q ss_pred eCCeeEEEE---Ec------CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCc Q lcl|Aclame:pro 140 DGNHIKIAW---VR------ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSP 210 (508) Q Consensus 140 d~~~~~i~~---v~------a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~ 210 (508) ++.+..... +. ....+|+..+ ++ .+ . .+ ..+ .+....|...+. T Consensus 167 d~~G~~~~~l~~~~~~~~~~v~~l~pl~p~--~v-~v------~-~d-~~g-----------------~~~~Y~y~~~g~ 218 (648) T protein:vir:79 167 AKDALPFQGMNVMGVGDSMPVAGYFPLNLA--SM-KV------K-RD-KFG-----------------MIKGWQQEQEGQ 218 (648) T ss_pred cCCCccchhhhhhhhccccceeeeEeecCc--ee-EE------E-Ec-CCC-----------------ceeeeEEEecCC Confidence 754321111 11 1122232110 00 00 0 00 000 011011111000 Q ss_pred cccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-c Q lcl|Aclame:pro 211 DIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-Q 289 (508) Q Consensus 211 ~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~ 289 (508) +..+++.. . -..+++. +...+.++|+|.+.-+...|.....+-....+-|+.+ . T Consensus 219 ---~~~~~~~~--------~----------dIIHik~----~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~ 273 (648) T protein:vir:79 219 ---DKPQKFKP--------E----------DIVHIYY----KREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLH 273 (648) T ss_pred ---ceeEEecC--------c----------cEEEEcc----CCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 01111000 0 0223432 1122356799999888887765544333333445543 4 Q ss_pred ceeeechHHhcCCCCC----CccCCcccceEeeecCCCC-CCCcceEeeccC--CHHHHHHHHHHHHHHHHHHhCCCchh Q lcl|Aclame:pro 290 KHIAVQPGMLRFDDEH----KPTFDTEQNVYVGVLSDDN-NGLGVKDMTTPI--RTVQYKDAIDHFIKEFEVQIGLSTGT 362 (508) Q Consensus 290 ~~i~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~di--r~e~~~~~l~~~l~~i~~~~g~s~~~ 362 (508) +..++. +..+... ......-...|......+. .......+.+.. ..-++.+..+...++|....|++|.. T Consensus 274 P~gil~---~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~l 350 (648) T protein:vir:79 274 PLWHVK---VGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELM 350 (648) T ss_pred ccEEEE---eCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhH Confidence 444331 1111111 0000000111222221111 111111122211 12245666677788999999999999 Q ss_pred cccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCc Q lcl|Aclame:pro 363 FSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGV 441 (508) Q Consensus 363 ~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i 441 (508) +|..+++. .|+.+....++ .++...+..+...+...+...+.+...+. .....+..+.|+|++-. T Consensus 351 LG~~~~ss~stae~~~~~~~---~~i~~l~~~i~~~le~~~~~~ll~e~~l~-----------~~l~~d~~ieF~~~~Ll 416 (648) T protein:vir:79 351 MGRGGTASRSTGDNLSSDFK---DRIKALQKVMATFINEFMVKEILMEGGFD-----------PVLNPDDKVEFRFNEID 416 (648) T ss_pred cccCCCccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----------ccccccceEEEeecccc Confidence 98765433 34443333332 23333333343333322211111111000 01123456889999888 Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHh--cCCCCHHHHHHHH-----HHHHHhccCCCCCCccccc--CCCCCCC Q lcl|Aclame:pro 442 FVNKDKQLEEDAKVLAIGALSKQTFLQR--NYGMTDEQAAEEL-----AKIQSEAPTDTFEGGRSAI--LNGGDGE 508 (508) Q Consensus 442 ~~d~~~e~~~~~~~~~~Gi~s~et~l~~--~~~~~deea~~e~-----~ri~~E~~~~~~~~~~~~~--~~~~~g~ 508 (508) ..|..+.++...+++.+|+||..+++.. ++-+++.+-...+ .-.++.........+..+. .++++|. T Consensus 417 r~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~ 492 (648) T protein:vir:79 417 MDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKK 492 (648) T ss_pred hhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCcccccc Confidence 8888888888888999999999999875 3333221111111 1000110000011111111 1111111 No 150 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=98.21 E-value=2.5e-06 Score=51.29 Aligned_cols=403 Identities=14% Similarity=0.120 Sum_probs=168.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhh-ccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKIT-DDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) ||+|+++ |.+.... .+..... ...-+.++... -| ..+... ... .+.+.. -+.+.--.. T Consensus 1 MG~f~~l---f~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~-~~~g~~-~~~---~v~~~~----al~~~~v~~ 59 (422) T protein:vir:13 1 MGFLRGL---FNKKNNN----DEKRSNYDEDIGIDISDSN-----FW-EKFGIK-LNF---SVRGKR----ALKENTVYV 59 (422) T ss_pred Cchhhhh---hhccCCc----cchhhhhhhccccccCcch-----hh-hhcccc-CCc---ccchhh----hhccHHHHH Confidence 9998865 3211100 0000000 00111111100 01 111111 111 011110 011122222 Q ss_pred HHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCC Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRAD 152 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~ 152 (508) .++.+|+-+-+=|+.+.-..++..+-.+..+|.. | ....-++.++...+..|.+++.+..+. |+ +.+..++|+ T Consensus 60 ci~~ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~ 139 (422) T protein:vir:13 60 CTKIRAESIGKLSLKIYKDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSD 139 (422) T ss_pred HHHHHHHhhhhCceEEEecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCc Confidence 3344444444435555211111111112233321 1 122445556777888899988777764 55 467788899 Q ss_pred eEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcce Q lcl|Aclame:pro 153 QFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQV 232 (508) Q Consensus 153 ~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~ 232 (508) ++-++..+++..... +...|. + . ..+| .... ++ ..+ T Consensus 140 ~v~~~~~~~~~~~~~------------~~~~y~---~-~-~~~g------------------~~~~---~~-----~~e- 175 (422) T protein:vir:13 140 NVTKIIDDDNFLSSL------------SKVWYV---V-T-DKNG------------------KEHK---LL-----PDE- 175 (422) T ss_pred ceEEEEcCCcceecc------------ceEEEE---E-E-eCCC------------------eEEE---Ec-----ccc- Confidence 988764333322110 000110 0 0 0001 0000 00 000 Q ss_pred eecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccC Q lcl|Aclame:pro 233 TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTF 309 (508) Q Consensus 233 ~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~ 309 (508) ..+++.+. ..+...|+|.+.-+...|......-....+-|+.| ++.-++ |..+ +++....+ T Consensus 176 ---------iih~~~~~----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---~~e~~~~~ 239 (422) T protein:vir:13 176 ---------MLHFIGDI----TLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDL---DEKAKKIF 239 (422) T ss_pred ---------eEEEcCCC----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC---CHHHHHHH Confidence 12333221 11234699999988888876554444444455653 555444 2111 11111100 Q ss_pred Ccc-cceEeeecCC-----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHH Q lcl|Aclame:pro 310 DTE-QNVYVGVLSD-----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSM 382 (508) Q Consensus 310 ~~~-~~~~~~~~~~-----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~ 382 (508) ... ...|.+.... -+++..++.++......+..+..+...++|....|++|..++...++. .++++... T Consensus 240 ~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~---- 315 (422) T protein:vir:13 240 KKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQK---- 315 (422) T ss_pred HHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH---- Confidence 000 0011111000 012233555555555556677777778899999999999998765443 22222111 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) ..++..|..++..|....+.. ++... .....+.|.|++++-...|.++.++...+++..|+|+ T Consensus 316 ---------~f~~~~l~P~~~~ie~~l~~~-Ll~~~-------~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T 378 (422) T protein:vir:13 316 ---------DFYVTTLQSSLTVYEQEIQDK-LFSQY-------ETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIE 378 (422) T ss_pred ---------HHHHHHHHHHHHHHHHHHHHh-hCChh-------hhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcC Confidence 112333333333332211110 11100 0011245666667766778899999999999999999 Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-+++... |+++ +..++.+.. ..-.+-+..+......++.+|+ T Consensus 379 ~NE~R~~~-gl~p~~ggD~~~~~--~n~~~l~~~~~~~~~~g~~~g~ 422 (422) T protein:vir:13 379 ANEARRRE-NLPPVEGGDRLLVN--GNMIPIEMAGEQYKKGGEKGGK 422 (422) T ss_pred HHHHHHHh-CCCCCCCcCeeeec--cCccchhhcccccccCCCcCCC Confidence 99988753 4433 111111110 0000000011111222333344 No 151 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=98.18 E-value=3e-06 Score=50.90 Aligned_cols=369 Identities=9% Similarity=0.049 Sum_probs=158.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--H Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--K 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~ 78 (508) ||||+++++--. ....+... ....+...+.+ ++.....+... ..+..+ . T Consensus 1 M~~f~~~~~~~~-------------------~~~~~~~~--~~~~~~~~~~~--~~~~~~~v~~~------~al~~~~v~ 51 (386) T protein:vir:49 1 MPIFNITNLATE-------------------SPPINQES--FFDIADSDFLA--SLNSSEWVSAE------NALKNSDLF 51 (386) T ss_pred CchhhhhccCCC-------------------Ccccchhh--hhhhhhccccc--cccCCceechh------hhhccHHHH Confidence 999887654210 00111100 01111111110 11111111110 011222 2 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYP 156 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~P 156 (508) ..++.+|+-+-+=|+.+. +.. .+..+.+--.......-.+.++...+..|.+++.+..+. |+ +.+.+++|+++-+ T Consensus 52 ~~i~~ia~~ia~~p~~~~--~~~-~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v 128 (386) T protein:vir:49 52 SIISQLSNDLATAKITTS--RKQ-LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSF 128 (386) T ss_pred HHHHHHHHHhhhCceeec--cch-hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEE Confidence 334555554444344443 322 222222211111223344556667778899988777764 44 3677888888766 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) ...+++.. +++.+. ..+.+ +. ....|.. .+ T Consensus 129 ~~~~~~~~----~~y~~~-----------------~~~~~-~~-~~~~~~~----------------------~e----- 158 (386) T protein:vir:49 129 NRLDNQNG----LYYNIT-----------------FDDPH-IA-PKQHVPQ----------------------ND----- 158 (386) T ss_pred EEcCCCce----EEEEEE-----------------EcCcc-cc-ceeEEcc----------------------cc----- Confidence 53332221 011110 00000 00 0000000 00 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCc-- Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDT-- 311 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~-- 311 (508) ..|++.+-++ +...|+|.+.-+...|+..........+-|+. +.++.++ |..+. ++....+.. T Consensus 159 -----vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~---~~~~~~~~~~~ 226 (386) T protein:vir:49 159 -----ILHFRLLSVD----GGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGL---LDFKTKVSRSR 226 (386) T ss_pred -----EEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCC---hHHHHHHHHHH Confidence 2344432221 23469999888888887665444444445564 4555444 22111 100000000 Q ss_pred ---ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 312 ---EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRS 388 (508) Q Consensus 312 ---~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~ 388 (508) ..+....+-. +++..++.++.+....+.++..+...++|....|++|..++.+.++..+++.+...+.. .+. T Consensus 227 ~~~~~n~g~~~vl--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~---~i~ 301 (386) T protein:vir:49 227 QAMKQMQGGPLVL--DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMIYNIYFK---SVS 301 (386) T ss_pred HHhccCCCCceec--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHHHHHHHH---HHH Confidence 0000010111 12234666665555567777888888999999999999998765554445433332221 222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~ 468 (508) -..+.++..|...+ . ..+.++.+..+-.|..+.+.....++.+|++++-+++. T Consensus 302 ~~l~~i~~~~~~~l------~---------------------~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~ 354 (386) T protein:vir:49 302 RYLRPFVSEMSKKL------S---------------------CEVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLY 354 (386) T ss_pred HHHHHHHHHHHHHh------c---------------------chhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 22222222222211 0 01334444445566677777888889999999888875 Q ss_pred hc--CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 469 RN--YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 469 ~~--~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .. .++...++ .+. +... .....|+|.+ T Consensus 355 ~l~~~~~~~~~~----~~~--~~~~-------~~~~~gGd~~ 383 (386) T protein:vir:49 355 ILQQAEILPKEL----PDG--KNPN-------RTSLKGGEIN 383 (386) T ss_pred HHhhCCCCCCcC----cch--hccC-------CCCCCCCCCC Confidence 42 23322221 111 1100 0011111111 No 152 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=98.13 E-value=3.9e-06 Score=50.25 Aligned_cols=438 Identities=10% Similarity=0.038 Sum_probs=179.4 Q ss_pred HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 7 IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIAS 86 (508) Q Consensus 7 ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ 86 (508) +|..+++...++ + +..-...|++++.---|.+-.....+.+....+.-=.-+...++.+|+ T Consensus 1 mk~~~~~~~~~l------k-------------r~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa 61 (510) T protein:vir:78 1 MKSTAAMLWEKL------R-------------DGSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNNLAA 61 (510) T ss_pred ChhHHHHHHHHH------h-------------ccchHHHHHHHHHhhccccccCCCCcccccccCcccchHHHHHHHHHH Confidence 444444333332 0 112345666666544332211111111111111111344555555555 Q ss_pred hhhcC--c-----ceEeeCCcH------------HHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 87 VVFNE--K-----AEIHVKDNN------------EADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 87 ll~~e--~-----~~i~~~~~~------------~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) -|.+- | .++.+++.. ...++ +...+..++|...+.++..+....|.+.+ |.+ T Consensus 62 ~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~~ 139 (510) T protein:vir:78 62 KLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALL--YRN 139 (510) T ss_pred HHHHhhcCCCCcccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE--EEe Confidence 55432 1 233333211 12333 34456778899999999999999998765 455 Q ss_pred CCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEE------------eecCCcEEEEEEEEEE---EeCCceEEEEEEE Q lcl|Aclame:pro 141 GNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQR------------TESNQTKYYTLLEFHQ---WQDNGSYQITNEL 204 (508) Q Consensus 141 ~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~------------~~~~~~~~yt~lE~h~---~~~~g~~~I~~~l 204 (508) ...-.+..+|-.+++ +..| +|++..+++..++.. ....+.+.+..+++++ ..++ ++.-.+.+ T Consensus 140 ~~~~~~~~~pl~~y~-v~~d~~G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~V~~~~~-~~~~~~sv 217 (510) T protein:vir:78 140 SDEATVVAWSLRSYA-VRRDATGRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYTHVQRRKG-TAMDYAEM 217 (510) T ss_pred CCCCeEEEEEcceeE-EeeCCCcCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEEEEEeecC-CCCcEEEE Confidence 433346677777765 4455 455655544333221 0001112222222222 1111 11001111 Q ss_pred EecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 205 YKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW- 283 (508) Q Consensus 205 y~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~- 283 (508) |..-+...+|. ...| +...-||..++ =+...++.+|+|--..+.+-++.|+..--.... T Consensus 218 ~~e~dg~~i~~------~~~~----------~~~e~P~~~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~ 277 (510) T protein:vir:78 218 YHEIDGVRVGE------TGRW----------PIHLCPYIVPT----WNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLY 277 (510) T ss_pred EEEecCeeecc------cccc----------ccccCCeeeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHH Confidence 21111111110 0000 01111122111 123346789999999999999999976544444 Q ss_pred HHHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeecc--CCHHHHHHHHHHHHHHHHHHhCCCch Q lcl|Aclame:pro 284 EIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTP--IRTVQYKDAIDHFIKEFEVQIGLSTG 361 (508) Q Consensus 284 e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--ir~e~~~~~l~~~l~~i~~~~g~s~~ 361 (508) .....++...|+++.+ .++. ...+.....++ .... + .+..++.. .+.....+.++.+.+.|....=++ T Consensus 278 a~~a~~~~~lv~p~g~-~~~~--~l~~~~~g~~v--~g~~-~--~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~~~-- 347 (510) T protein:vir:78 278 ELESLEVLNLVDEAKG-AVVD--DYQDAEMGDYV--PGGA-E--AVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYG-- 347 (510) T ss_pred HHHhhcCCcccCCccc-cchh--hhccCCCceee--cCCc-c--cccccccCcccchHHHHHHHHHHHHHHHHHHhhc-- Confidence 3345555555543221 0100 01111111221 1111 1 23333311 223334455555555554332111 Q ss_pred hccccccccchHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCC Q lcl|Aclame:pro 362 TFSYSNDGVKTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDG 440 (508) Q Consensus 362 ~~~~~~~~~~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~ 440 (508) .....+...|||||....+...+...-. .+.-..-|..|+.-++.+..-.++.+.... .. ....|++-.. T Consensus 348 -l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~-----~~---~~~~v~~is~ 418 (510) T protein:vir:78 348 -ANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITK-----QH---KPAIETGLPA 418 (510) T ss_pred -cccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc-----cc---cceeeecccH Confidence 1112334469999999998888877763 333444556666666555433333221110 00 1112332222 Q ss_pred ccCCHH-HHHHHHHHHHh-CCC-------CCHHHH---HHhcCCC-------CHHHHHHHHHHHHHhcc-------CCCC Q lcl|Aclame:pro 441 VFVNKD-KQLEEDAKVLA-IGA-------LSKQTF---LQRNYGM-------TDEQAAEELAKIQSEAP-------TDTF 494 (508) Q Consensus 441 i~~d~~-~e~~~~~~~~~-~Gi-------~s~et~---l~~~~~~-------~deea~~e~~ri~~E~~-------~~~~ 494 (508) +-...+ +.+....+.++ .|- +....+ +....|+ |+||++++.++.++.++ .-+. T Consensus 419 Laraq~~~~l~~~~q~l~~~~~~~q~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~ 498 (510) T protein:vir:78 419 LSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLE 498 (510) T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 211111 11112222221 121 122222 2334566 34666665543321110 0011 Q ss_pred CCcccccCCCCC Q lcl|Aclame:pro 495 EGGRSAILNGGD 506 (508) Q Consensus 495 ~~~~~~~~~~~~ 506 (508) +.++.++--.+- T Consensus 499 ~~~~~~~~~~g~ 510 (510) T protein:vir:78 499 GASDMTNALAGV 510 (510) T ss_pred hhhhhcccCCCC Confidence 111111111111 No 153 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=98.10 E-value=4.5e-06 Score=49.90 Aligned_cols=430 Identities=12% Similarity=0.142 Sum_probs=181.8 Q ss_pred CChH---H--HHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccc Q lcl|Aclame:pro 1 MGLI---Q--RIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTIN 75 (508) Q Consensus 1 m~~~---~--~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n 75 (508) |.|. + +++.-+. .+..++..-...|+.+|.--.|.+-....++.+.. ++-=. T Consensus 1 ~~~~~~~e~~~l~~r~~---------------------~Lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~--~~~ds 57 (517) T protein:vir:10 1 MDMRFAGNKSKIPKLYE---------------------QLVGKRSPFLSRAENYSRFTLPYLMADVNDDLSSQ--NAWQD 57 (517) T ss_pred CcccccccHHHHHHHHH---------------------HHHHhhhHHHHHHHHHHHHhccccccCCCCCcccc--ccccc Confidence 6665 1 1222221 11222333456676666544442211111122222 22123 Q ss_pred hHHHHHHHHHHhhhcC--c-----ceEeeCCc------------HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 76 MAKTAARRIASVVFNE--K-----AEIHVKDN------------NEADKF-------LNDVLEDNDFKNKFEEALEKGVA 129 (508) Q Consensus 76 ~~~~iv~~~A~ll~~e--~-----~~i~~~~~------------~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~ 129 (508) -+...++.+|+-|.+- | .++.+++. +..+++ +...+..++|...+.++..+... T Consensus 58 tg~~a~~~LAa~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~ 137 (517) T protein:vir:10 58 DGASATNFLSNKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIV 137 (517) T ss_pred hHHHHHHHHHHHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh Confidence 4455555555555432 1 23333221 112222 34456677899999999999999 Q ss_pred cCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEee--------------------cCCcEEEEEEE Q lcl|Aclame:pro 130 LGGFAMRPYIDGNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRTE--------------------SNQTKYYTLLE 188 (508) Q Consensus 130 ~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~~--------------------~~~~~~yt~lE 188 (508) .|.+.+ |.+++...+..+|-.+++ +..| +|++..+++..++.... ...-.+|++++ T Consensus 138 ~G~a~l--y~~~~~~~~~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~ 214 (517) T protein:vir:10 138 TGNVMM--YHPDKTSPIQAVPLHHYC-VRRDNNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHAK 214 (517) T ss_pred HCeEEE--EEeCCCCcEEEEEcCeEE-EeeCCCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEEE Confidence 998764 677766667778878866 4444 56666655443322100 01112333333 Q ss_pred EEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHH Q lcl|Aclame:pro 189 FHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAK 268 (508) Q Consensus 189 ~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~ 268 (508) + ..+|.+.+ |..-+...+| .+ ..| .+...|-..+.| +...++.+|+|--..+. T Consensus 215 ~---~~~~~~~~----~~~~d~~~~~-----~~-s~y-------~~~e~P~~~~Rw-------~~~~ge~YGrgp~~~~L 267 (517) T protein:vir:10 215 R---TKDGKYLI----RQSADDVPVG-----KE-STV-------TEDKSPFLILTW-------KRSYGEDYGRGMAEDHA 267 (517) T ss_pred E---eCCCceEE----EEEeCceeec-----cc-ccc-------ccccCCeeeeee-------eecCCCCcccchHHHhH Confidence 2 22333222 2211111111 11 001 011111111222 22336789999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHH Q lcl|Aclame:pro 269 HVLDDINDTHDQFIW-EIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAI 345 (508) Q Consensus 269 ~lid~lD~~~s~~~~-e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l 345 (508) +-++.|+..--.... .....++...||++.+... ....+.....+. .... ..+..++ ...+.....+.+ T Consensus 268 ~D~k~L~~l~~~~~~~~~~a~~~~~lv~~~~~~~~---~~l~~~~~g~~~--~g~~---~~v~~~~~~~~~d~~~~~~~i 339 (517) T protein:vir:10 268 GAFFVIQFLSEALARGMALMADVKYLVKPGSYTDI---NQFVEGGSGAVL--HGVE---GDIHIVQLGKYADYTPIQAVL 339 (517) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccCcccccch---hhccCCCccccc--cCCc---ccceeeecccccchhHHHHHH Confidence 999999976444433 4456777777766543211 011111111221 1111 1233333 222334445555 Q ss_pred HHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhcccccccccccc Q lcl|Aclame:pro 346 DHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTL 424 (508) Q Consensus 346 ~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~ 424 (508) +.+.+.|....=+.. +...++...|||||....+...+...-.-.. -..-|..|+.-++.... .. T Consensus 340 ~~~~~rI~~af~~~~--l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~--~~---------- 405 (517) T protein:vir:10 340 NDYRQRIGRVFMMEA--MTRRDAERVTAYEIQRDAMLVEQSLGGVYSLFATTFQGPLARWFMNGIS--SI---------- 405 (517) T ss_pred HHHHHHHHHHHhhhh--hhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hh---------- Confidence 555555543331111 2222334579999999998888877763322 22333444544433221 11 Q ss_pred ccccCcceEEEEeCCCcc-CCHHHHHHHHH---HHHhC--C-------CCCHHHHH---HhcCCCC------HHHHHHHH Q lcl|Aclame:pro 425 DSASQPLDIECHFDDGVF-VNKDKQLEEDA---KVLAI--G-------ALSKQTFL---QRNYGMT------DEQAAEEL 482 (508) Q Consensus 425 ~~~~~~~ei~i~f~d~i~-~d~~~e~~~~~---~~~~~--G-------i~s~et~l---~~~~~~~------deea~~e~ 482 (508) .+.++.++++. -++. ..+..+++... +.++. . .+....++ ..-.|++ ++|++++. T Consensus 406 -l~~~~v~~~~~--s~la~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~ 482 (517) T protein:vir:10 406 -LTSKNVSPTIL--TGIEALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEA 482 (517) T ss_pred -cCCCCccceee--ccHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHH Confidence 11112223221 1111 11222222222 22211 0 01112222 2234544 35655554 Q ss_pred HHHHHhccCC---------CCCCcccccCCCCCCC Q lcl|Aclame:pro 483 AKIQSEAPTD---------TFEGGRSAILNGGDGE 508 (508) Q Consensus 483 ~ri~~E~~~~---------~~~~~~~~~~~~~~g~ 508 (508) ++.+..++.. ....-..+..+-..|. T Consensus 483 ~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~ 517 (517) T protein:vir:10 483 QAQQEQEATKYAAEQAGKAIPDMVKNGQINPQGGQ 517 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC Confidence 4433332110 0000011111111111 No 154 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=98.05 E-value=6e-06 Score=49.19 Aligned_cols=436 Identities=12% Similarity=0.074 Sum_probs=182.3 Q ss_pred HHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 7 IKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIAS 86 (508) Q Consensus 7 ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ 86 (508) +|..+++...++ + +..-...|+.++.---|.+-.....+.+....+.-=.-+...++.+|+ T Consensus 1 mk~~~~~~~~~l-------------k------R~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa 61 (510) T protein:vir:63 1 MKTTAAMLWEKL-------------R------DGSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNNLAA 61 (510) T ss_pred ChhHHHHHHHHH-------------h------ccchHHHHHHHHHhhccccCCCCCCccccccCCCccchHHHHHHHHHH Confidence 333333222221 0 112345666666544332211111111211122211344555555555 Q ss_pred hhhcC--c-----ceEeeCCc------------HHHHH-------HHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe Q lcl|Aclame:pro 87 VVFNE--K-----AEIHVKDN------------NEADK-------FLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID 140 (508) Q Consensus 87 ll~~e--~-----~~i~~~~~------------~~~~~-------~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d 140 (508) -|.+- | .++.+++. ...++ .+...+..++|...+.++..+....|.+. .|.+ T Consensus 62 ~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~--l~~~ 139 (510) T protein:vir:63 62 KLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNAL--LYRD 139 (510) T ss_pred HHHhhhcCCCCcccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEE--EEEc Confidence 55432 1 23333321 11233 34556777889999999999999999864 4566 Q ss_pred CCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe------------ecC------CcEEEEEEEEEEEeCCceEEEE Q lcl|Aclame:pro 141 GNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT------------ESN------QTKYYTLLEFHQWQDNGSYQIT 201 (508) Q Consensus 141 ~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~------------~~~------~~~~yt~lE~h~~~~~g~~~I~ 201 (508) .+..++..+|-.+++ +..| +|++..+++..++... ... .-..|+++++.. +.+.++. T Consensus 140 ~~~~~~~~~pl~~y~-v~~d~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~V~~~~-~~~~~~~-- 215 (510) T protein:vir:63 140 SDAATVVAWSLRSYA-VRRDATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTHVQRKK-GTAMEYA-- 215 (510) T ss_pred CCCcEEEEEEcceeE-EeeCCCcCeeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEEEEeec-CCCceEE-- Confidence 666667788888866 4455 4566555443332210 000 112444443321 1111111 Q ss_pred EEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 NELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF 281 (508) Q Consensus 202 ~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~ 281 (508) .+|..-+...+| .++ .| +...-+|..++ =+...++.+|+|--..+.+-++.|+..--.. T Consensus 216 -sv~~e~dg~~~~---~~~---~~----------~~~e~P~~~~R----w~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 274 (510) T protein:vir:63 216 -ELYHEIDGVRVG---KEG---RW----------PIHLCPYIVPT----WNLAPGEHYGRGHVEDYIGDFAKLSLLSEKL 274 (510) T ss_pred -EEEEEecCceec---ccc---cc----------ccccCceeeee----eeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 111111111111 000 00 11111122111 1233467899999999999999999765444 Q ss_pred HH-HHHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 282 IW-EIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFIKEFEVQIGL 358 (508) Q Consensus 282 ~~-e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l~~i~~~~g~ 358 (508) .. .....++..+|+++.+ .++.. ..+.....+ +.... ..+..++ +..+.....+.++.+.+.|....=+ T Consensus 275 l~~a~~a~~~~~lv~p~g~-~~~~~--~~~~~~g~~--v~g~~---~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~ 346 (510) T protein:vir:63 275 GLYELESLEVLNLVDEAKG-AVVDD--YQDAEMGDY--VPGGA---EAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMY 346 (510) T ss_pred HHHHHHhccCCcccCcccc-cchhh--hccCCCcee--ecCCc---ccceeeecCcccchHHHHHHHHHHHHHHHHHHHh Confidence 44 3345566656644221 11110 111111111 11111 1243333 2223444455556665555433211 Q ss_pred CchhccccccccchHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceE-EEE Q lcl|Aclame:pro 359 STGTFSYSNDGVKTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDI-ECH 436 (508) Q Consensus 359 s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei-~i~ 436 (508) . .....+...|||||....+...+...-. .+.-..-|..|+.-++.+..-.++.+... ....+ .++ T Consensus 347 ~---l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~---------~~~~~~~v~ 414 (510) T protein:vir:63 347 G---ANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLIT---------KQHKPAIET 414 (510) T ss_pred h---cccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc---------hhcccceec Confidence 1 1122334469999999998888877763 33344455666666655543333322111 11111 122 Q ss_pred eCCCccCCHHH-HHHHHHHHH-hCCCCC-------HHHHH---HhcCCC-------CHHHHHHHHHHHHHhccCC----- Q lcl|Aclame:pro 437 FDDGVFVNKDK-QLEEDAKVL-AIGALS-------KQTFL---QRNYGM-------TDEQAAEELAKIQSEAPTD----- 492 (508) Q Consensus 437 f~d~i~~d~~~-e~~~~~~~~-~~Gi~s-------~et~l---~~~~~~-------~deea~~e~~ri~~E~~~~----- 492 (508) +-..+-...+. .+....+.+ ..|-+. ...++ ....|+ |+||++++.++...+.... T Consensus 415 ~is~Laraq~~~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~ 494 (510) T protein:vir:63 415 GLPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQE 494 (510) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHH Confidence 21111111111 111112222 112111 22222 333565 4566666554422221110 Q ss_pred CCCCcccccCCCCCCC Q lcl|Aclame:pro 493 TFEGGRSAILNGGDGE 508 (508) Q Consensus 493 ~~~~~~~~~~~~~~g~ 508 (508) .-..++....+.--|= T Consensus 495 ~~~~~a~~~~~~~~g~ 510 (510) T protein:vir:63 495 TLLEGASDMTNALAGV 510 (510) T ss_pred HHHHHHHhhcccccCC Confidence 0000100000111111 No 155 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=97.96 E-value=9.1e-06 Score=48.23 Aligned_cols=372 Identities=12% Similarity=0.090 Sum_probs=152.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|++. +|+ +.+-+. .+..+. ..|....-+.- ....+... ....+.--... T Consensus 1 Mg~~~~~--~~~--------k~~~~~-----~~~~~~------~~~~~~~~~~~---~~~~v~~~----~~l~~~~v~~~ 52 (383) T protein:vir:10 1 MGLLTPK--NFS--------KRNAKN-----MVYPSN------PAFFTTTVGGM---QLSYVSAL----SALQNTNVYSV 52 (383) T ss_pred CCccccc--ccc--------cccccc-----cccccc------hhhhhhhccCc---cccccchh----HhhcchHHHHH Confidence 9998752 111 111010 011110 11111111110 00111110 00111111223 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d 160 (508) ++.+|+-+-.=|+++. +.. ....|..--..-.....+..++...+-.|.+++.+.-+ . +.+++++.+- T Consensus 53 i~~ia~~ia~~~~~~~--~~~-~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~--~--~~~~p~~~~~----- 120 (383) T protein:vir:10 53 INRIASDVSSAHFKTE--NTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ--N--LEHIPNSDVQ----- 120 (383) T ss_pred HHHHHHhhccCceeec--ccc-hhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC--c--eeEeecCcce----- Confidence 4444444433344443 322 22233321111123333445566666778887654322 2 2222222211 Q ss_pred CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcc Q lcl|Aclame:pro 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) Q Consensus 161 ~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~ 240 (508) + .. .....+.+|...+ ..++. .++ | + . .+ T Consensus 121 ---v-------~~--~~~~~~~~~~~~~----~~~~~-~~~---~------------~-----~-----~e--------- 149 (383) T protein:vir:10 121 ---I-------NY--LPGNMGIVYTVLE----SNDRP-KMV---L------------R-----Q-----DQ--------- 149 (383) T ss_pred ---E-------EE--EEcCCceEEEEEE----cCCce-EEE---E------------c-----c-----cc--------- Confidence 0 00 0011111221110 00000 000 0 0 0 00 Q ss_pred eEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceE Q lcl|Aclame:pro 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVY 316 (508) Q Consensus 241 ~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~ 316 (508) ..++|.+-++. .....|+|.+.-+...|+....+-.....-|+.| .+..++ +..+. +++....+... ...+ T Consensus 150 -vih~r~~~~~~--~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~--~~e~~~~~~~~~~~~~ 224 (383) T protein:vir:10 150 -MLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS--DGKDLESAREEFEKAN 224 (383) T ss_pred -eEEeccCCCCc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC--CHHHHHHHHHHHHHHh Confidence 12333221111 1124599999888888887776665555556654 454443 21111 11111111000 0011 Q ss_pred eeecCCC----CCCCcceEeeccCCHHHHH-HHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 317 VGVLSDD----NNGLGVKDMTTPIRTVQYK-DAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 317 ~~~~~~~----~~~~~i~~~~~dir~e~~~-~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) .+-+.+. +++..++.++.+....+.+ +..+...++|....|++|..++....+..|...+.........++.-.. T Consensus 225 ~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~ 304 (383) T protein:vir:10 225 TGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYV 304 (383) T ss_pred CccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHH Confidence 1100000 1233466666555555554 5667778899999999999998654332222111111111112222222 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc- Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN- 470 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~- 470 (508) ..++..|... +. ...+.++++.-+..|.++.++...+++.+|+|+..+++... T Consensus 305 ~~ie~~l~~~------------l~--------------~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg 358 (383) T protein:vir:10 305 NPIVDELRLK------------MN--------------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILT 358 (383) T ss_pred HHHHHHHHHh------------hC--------------CceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 2233322211 00 12477888888889999999999999999999999888653 Q ss_pred -CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 471 -YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 471 -~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +++...+ +.+ . ........|+|.| T Consensus 359 ~~p~~~~d----~~~---------~-~~~~~~~~gGd~e 383 (383) T protein:vir:10 359 RSGFLPDN----LPE---------F-KPLTNETKGGDDK 383 (383) T ss_pred CCcccCCc----ccc---------c-CCCcccCCCCCCC Confidence 3332211 000 0 0111233444555 No 156 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=97.95 E-value=9.4e-06 Score=48.15 Aligned_cols=384 Identities=10% Similarity=0.089 Sum_probs=162.1 Q ss_pred ccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCC----cHHHH---HHHHH-HHHh-------------hh Q lcl|Aclame:pro 57 IHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKD----NNEAD---KFLND-VLED-------------ND 115 (508) Q Consensus 57 ~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~----~~~~~---~~l~~-~l~~-------------n~ 115 (508) +. ..-.........++.+|+-+.+=|+.+.... +.... +.+.. ++.. .. T Consensus 1 l~----------~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t 70 (467) T protein:vir:31 1 MA----------ELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERAT 70 (467) T ss_pred Ch----------hhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhH Confidence 10 0000124556677777777776666664211 11111 11111 1111 12 Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEE-EEEE Q lcl|Aclame:pro 116 FKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLE-FHQW 192 (508) Q Consensus 116 f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE-~h~~ 192 (508) +...+..++...+..|.+++.+..+. |+ +.+..+++..+-+. .+..+.... ......+|.... .+.. T Consensus 71 ~~~~~~~~~~~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~-~d~~~~~~~---------~~~~~~~~~~~~~~~~~ 140 (467) T protein:vir:31 71 ATNVLQTAWTDYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKR-MDERGFVQL---------LEEKEKYFGVAGDRYQT 140 (467) T ss_pred HHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEee-eecceeEee---------cCCceeeEEecccccee Confidence 33456667888888999998888875 44 46888999887764 332221100 001111111000 0000 Q ss_pred eCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHH Q lcl|Aclame:pro 193 QDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLD 272 (508) Q Consensus 193 ~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid 272 (508) ...+.+ ....+.. .....|..+ .+ +.--..+++.+-+. +..+|+|.+..+...|. T Consensus 141 ~~~~~~--~~~~~~~-~~~~~~~~~---------------~~---~~~diih~r~~~~~----~~~~G~s~~~~~~~~i~ 195 (467) T protein:vir:31 141 NGNGDL--DPVFVDA-DDGSTGTSV---------------SN---PANELIFKRNHSPL----YPHYGAPDIIPAVKTIR 195 (467) T ss_pred ecccce--eeeeeee-cccccccee---------------Ee---ccccEEEecCCCCC----CCcccccHHHHHHHHHH Confidence 000000 0000000 000001110 01 11113345443222 23469999888887775 Q ss_pred HHHHHHHHHHHH-HHhc-ccee--eechHHhcCCCCCC----ccCCcc---------------cc--eEeeecCCCC-CC Q lcl|Aclame:pro 273 DINDTHDQFIWE-IRLG-QKHI--AVQPGMLRFDDEHK----PTFDTE---------------QN--VYVGVLSDDN-NG 326 (508) Q Consensus 273 ~lD~~~s~~~~e-~~~~-~~~i--~v~~~~~~~~~~~~----~~~~~~---------------~~--~~~~~~~~~~-~~ 326 (508) . +.....+... |+.| .+.- .++..++. ++.. ..+... .+ ....+..+.+ .. T Consensus 196 ~-~~~~~~~~~~~f~ng~~p~gil~~~~~~l~--~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~ 272 (467) T protein:vir:31 196 G-DSAAQDYNIDFFENDGVPRIAIIVKGAELT--EKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSD 272 (467) T ss_pred H-HHHHHHHHHHHHhccCCCceEEEecCcCCC--HHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccc Confidence 4 4445555444 4654 3332 23332221 1110 001000 00 0000011100 00 Q ss_pred Ccce--EeeccCC-HHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 LGVK--DMTTPIR-TVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM-TYQTRSSYLTMVEKAIDELC 402 (508) Q Consensus 327 ~~i~--~~~~dir-~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~-l~~~~~~~~~~~~~al~~li 402 (508) .+++ .++.-.. ..++.+..+...+.|....|++|..+|+..++. +++.+...... ...++.-+.+.|+.+|...+ T Consensus 273 ~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~-~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l 351 (467) T protein:vir:31 273 VEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGA-FSTDAEEQRKEFAEETIQPKQHDFGELLYELV 351 (467) T ss_pred cceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 1122 2222222 234566667778889999999999988754432 12111111111 11222223333333333221 Q ss_pred HHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHHHH Q lcl|Aclame:pro 403 QSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAE 480 (508) Q Consensus 403 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea~~ 480 (508) +.. ......+.+.+++..-...|.++.++....++..|+++..+++... +-+.|++... T Consensus 352 ------------~~~-------~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~Gl~pi~d~~~~~ 412 (467) T protein:vir:31 352 ------------HKQ-------GLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEFGFEPFPEEHVYG 412 (467) T ss_pred ------------cch-------hhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccC Confidence 111 1112345678888888889999999999999999999999998763 3333322100 Q ss_pred ---HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 481 ---ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 481 ---e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..........+....++..........| T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467) T protein:vir:31 413 GETLVAEVTGGSGPGGGIGDQIEQLVEDRAD 443 (467) T ss_pred CcccccccccccCCCCcccCcCCCCCCCccc Confidence 0000000000000001100000001111 No 157 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=97.90 E-value=1.2e-05 Score=47.60 Aligned_cols=389 Identities=10% Similarity=0.040 Sum_probs=167.9 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) |+...-+++-..... ..+ .-...+..+|.|..-+. ...+.... -+...--...++.+|+-+-.=|+.+-- T Consensus 1 m~~~~~f~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~-~~~v~~~~----al~~~~v~~~i~~Ia~~ia~l~~~~~~ 70 (416) T protein:vir:12 1 MLLERMFEKRSGSSD-HED----GFNNILLNMFGGRKTAS-GERVSESN----SLVQPDIFACVNVLSDDIAKLPIHTYK 70 (416) T ss_pred CccchhcccccCccc-cCc----cchhHHHHhhcCccccc-Cceechhh----hhccHHHHHHHHHHHHhhhhCceEEEE Confidence 211111111111000 000 01122344565543211 11111110 001111122334444444333444321 Q ss_pred CCcH---HH-HHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEE Q lcl|Aclame:pro 98 KDNN---EA-DKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISE 166 (508) Q Consensus 98 ~~~~---~~-~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~ 166 (508) ..++ .. +--+..+|. -| ....-.+.++...+..|.+++.+..+. |.+ .+-.++|+.+-++..+.+.. T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~-- 148 (416) T protein:vir:12 71 RTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGM-- 148 (416) T ss_pred ecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcE-- Confidence 1111 00 001222221 11 222445566777888899988777764 443 56667787766542222211 Q ss_pred EEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEec Q lcl|Aclame:pro 167 AAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFK 246 (508) Q Consensus 167 ~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~ 246 (508) .|..+ . . +|. .+ .++. . -+.+++ T Consensus 149 ----------------~~~~~---~-~-~g~------------------~~---~~~~-----~----------eiih~~ 171 (416) T protein:vir:12 149 ----------------LWYQT---V-L-NGK------------------AI---ELYD-----Y----------EVLHFK 171 (416) T ss_pred ----------------EEEEE---e-c-CCe------------------EE---EecC-----c----------cEEEec Confidence 11000 0 0 010 00 0000 0 022333 Q ss_pred CCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech-HHhcCCCCCCccCCcccceEeeecC-C- Q lcl|Aclame:pro 247 TPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP-GMLRFDDEHKPTFDTEQNVYVGVLS-D- 322 (508) Q Consensus 247 ~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~- 322 (508) .+-. +.+.|+|.+.-+...++.....-....+-|+. +.++.++.- ..+ +++....+. ..|.+... + T Consensus 172 ~~~~-----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~--~~e~~~~~~---~~~~~~~~~~~ 241 (416) T protein:vir:12 172 GLST-----DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFL--DEKPKENVR---KEWKRVNKVEN 241 (416) T ss_pred CcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCC--CHHHHHHHH---HHHHHHhcCCC Confidence 2211 23579999888888887755444444555665 455555421 011 111111110 01111000 0 Q ss_pred ---CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHH Q lcl|Aclame:pro 323 ---DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAI 398 (508) Q Consensus 323 ---~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al 398 (508) -+++..++.++......++.+..+...+.|....|++|..++...++. .++++....+ ...++.-+...++.+| T Consensus 242 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f--~~~~l~P~~~~ie~~l 319 (416) T protein:vir:12 242 IAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEY--VRNTLQPWIVNFEQEL 319 (416) T ss_pred eeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHH--HHHHHHHHHHHHHHHH Confidence 012234565655555667788888888999999999999998765443 2232222111 1122222333333332 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH-HH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD-EQ 477 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d-ee 477 (508) ..- ++.... ....+.+.+++++-+..|..+.++...+++.+|+|+.-+++... |+.+ +. T Consensus 320 ~~~------------l~~~~~-------~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~-gl~Pi~g 379 (416) T protein:vir:12 320 NVK------------LFLDHD-------QKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELL-ERNPIEN 379 (416) T ss_pred HHh------------hcCchh-------hcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCC Confidence 221 111000 01124577888887888999999999999999999999988753 3322 11 Q ss_pred HHHHHHH-------HHHhccCCCCCCcccccCCCCCC Q lcl|Aclame:pro 478 AAEELAK-------IQSEAPTDTFEGGRSAILNGGDG 507 (508) Q Consensus 478 a~~e~~r-------i~~E~~~~~~~~~~~~~~~~~~g 507 (508) .++-+.. ...++.......+..++++.++| T Consensus 380 gd~~~~~~n~~~~~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 380 GDKYISSLNYVFLDFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred cceeeeccccccccccchhhccccccccCCCCCcCCC Confidence 1111100 00111122222233344555555 No 158 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=97.85 E-value=1.5e-05 Score=47.11 Aligned_cols=389 Identities=11% Similarity=0.079 Sum_probs=165.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||++ +|+|. +- ..+. ++ ..|..++.+-.+......+..... +...--... T Consensus 1 Mg~f~~---lf~r~--------~~------~~~~-~~------~~~~~~~~~~~~~~~g~~v~~~~a----l~~~~v~~~ 52 (414) T protein:vir:44 1 MVFFSG---LFQRK--------SD------APVT-TP------AELADAIGLSYDTYTGKQISSQRA----MRLTAVFSC 52 (414) T ss_pred Cchhhh---hhccC--------cc------Cccc-ch------hhHhHhhccCccccCCceechhhh----hccHHHHHH Confidence 999875 34321 10 1111 11 122233333222222221111100 011111233 Q ss_pred HHHHHHhhhcCcceEee-CCc--HH-HHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEEEc Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHV-KDN--NE-ADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIAWVR 150 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~-~~~--~~-~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~v~ 150 (508) ++.+|+-+-.=|+.+-- +++ .. .+..+..+|.. .....-.+.++...+..|.+++.+..++|++ .+..++ T Consensus 53 i~~Ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~~g~~~~L~~l~ 132 (414) T protein:vir:44 53 VRVLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVD 132 (414) T ss_pred HHHHHHHhccCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEc Confidence 34444444333444321 111 00 01112233321 1223345556777788898888777666665 466777 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCc Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 230 (508) |..+-+...++++. .|. + ... +|... .| + . . T Consensus 133 ~~~v~~~~~~~~~~------------------~y~---~-~~~-~g~~~----~~------------~-----~-----~ 163 (414) T protein:vir:44 133 PGCVVPKLNSSWEP------------------VYQ---V-TFP-DGSTD----VL------------S-----Q-----E 163 (414) T ss_pred CceEEEEECCCCcE------------------EEE---E-Eec-CceEE----EE------------c-----c-----c Confidence 77766542222221 110 0 000 11100 00 0 0 0 Q ss_pred ceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCc Q lcl|Aclame:pro 231 QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKP 307 (508) Q Consensus 231 ~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~ 307 (508) + ..+++.+-. +...|+|.+.-+...|+.....-....+-|+. +++.-++ +..+ +++... T Consensus 164 e----------vih~~~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---~~e~~~ 225 (414) T protein:vir:44 164 D----------IWHVRTLTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTL---SDQAYE 225 (414) T ss_pred c----------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC---CHHHHH Confidence 0 223432211 23569999888887777655544444445554 4444333 2111 111111 Q ss_pred cCCcc-cceEeeecC-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHH Q lcl|Aclame:pro 308 TFDTE-QNVYVGVLS-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNN 380 (508) Q Consensus 308 ~~~~~-~~~~~~~~~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~ 380 (508) .+... ...|.+... + -+++..++.++......++.+..+...++|....|++|..++...++. .++++.... T Consensus 226 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~- 304 (414) T protein:vir:44 226 RLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLG- 304 (414) T ss_pred HHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH- Confidence 01000 001111100 0 012223555555444556677777778899999999999998765432 333222211 Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 381 SMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) Q Consensus 381 ~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi 460 (508) .++.+|..++..|-...+. .++.... ...+.+.|+++.-+..|..+.++.+.+++.+|+ T Consensus 305 ------------~~~~~l~P~~~~ie~~ln~-~L~~~~~--------~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~ 363 (414) T protein:vir:44 305 ------------FINYSLVPYLTRIEQRINT-GLVRKSK--------QGVFYAKFNAGALLRGDMKSRFEAYATGINWGI 363 (414) T ss_pred ------------HHHHHHHHHHHHHHHHHHh-hcCCccc--------cCceEEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 2333444444333222111 1111110 012346677777677898999999999999999 Q ss_pred CCHHHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 461 LSKQTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 461 ~s~et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+.-+++... |+++ +..++-+...+-...... ..+....-+++++| T Consensus 364 ~t~NE~R~~~-gl~p~~ggD~~~~~~n~~~~~~~-~~~~~~~~~~~~~d 410 (414) T protein:vir:44 364 YSPNDCRDLE-DMNPRPGGDVYLTPMNMTTKPSD-GSKAGKQKDNANAD 410 (414) T ss_pred cCHHHHHHHh-CCCCCCCcceecccccccccCCc-cccCCCCCCCCCCC Confidence 9999988753 4433 112221111111100000 01111111112222 No 159 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=97.85 E-value=1.5e-05 Score=47.03 Aligned_cols=384 Identities=13% Similarity=0.084 Sum_probs=163.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHh-cCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYY-SDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y-~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) ||+|+|+ |++-.. ......... +. ..+..|+ .|. .+.... -+.+.--.. T Consensus 1 Mgl~~~~---f~~~~~----~~~~~~~~~---~~---------~~~~~~~~~g~-------~v~~~~----al~~~~v~~ 50 (409) T protein:vir:84 1 MSLFTRI---FSGPSE----ERTLTKISG---IP---------SPAEDWAMHGD-------RPGANS----AMTLGAFYA 50 (409) T ss_pred Cchhhhh---hcCCCc----ccccccccc---cc---------cccchhhccCc-------ccchhh----hhccHHHHH Confidence 9999865 432110 001000000 00 0000111 111 000000 001111122 Q ss_pred HHHHHHHhhhcCcceEeeCCcH-HH-HHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEE-e-CCe-eEEEEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNN-EA-DKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYI-D-GNH-IKIAWV 149 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~-~~-~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~-d-~~~-~~i~~v 149 (508) .++.+|+-+-+=|+.+--.++. .. ..-+..+|.. -.....+..++...+..|.++..+.. + .|+ ..+..+ T Consensus 51 ~v~~ia~~iA~lp~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l 130 (409) T protein:vir:84 51 CVTLLADTVASLSIDAYRKKDNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPI 130 (409) T ss_pred HHHHHHHhhhhCceEEEEecCCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEE Confidence 3333443333334443211111 10 1112223321 12233455567777888988765544 3 344 356677 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-+....+.. +.+|.. .+..+ |..++-.+ T Consensus 131 ~p~~v~v~~~~~~~-----------------~~~~~~----~~~~~------------------g~~~~~~d-------- 163 (409) T protein:vir:84 131 HPDCIHVTDAKDED-----------------GDWIEP----VYRID------------------GKVVPNHR-------- 163 (409) T ss_pred cCceeEEEEcCCCc-----------------ceEEEE----EecCC------------------ceEEchhh-------- Confidence 77776543211111 011100 00000 11111000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeec--hHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQ--PGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~--~~~~~~~~~~~ 306 (508) ..+++.+-++ +...|+|.+.-+...|+....+-....+-|+. +++..++. ..+ +++.. T Consensus 164 ------------vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l---~~e~~ 224 (409) T protein:vir:84 164 ------------IMHIKRYPVA----GCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADL---TPDQV 224 (409) T ss_pred ------------EEEecCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC---CHHHH Confidence 2233322111 23468998888887777766555445555664 45555541 111 11111 Q ss_pred ccCCc-----ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHH Q lcl|Aclame:pro 307 PTFDT-----EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNS 381 (508) Q Consensus 307 ~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~ 381 (508) ..+.. ..+....+-. +++..++.++......++.+..+...++|....|++|.-+++...+..++..+..... T Consensus 225 ~~~~~~~~~~~~n~g~~~vl--~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~ 302 (409) T protein:vir:84 225 KQTQKQWIQSHHNRRLPAVM--SAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGI 302 (409) T ss_pred HHHHHHHHHHhccCCCeeec--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHH Confidence 00000 0000000011 1222355555544555677777788899999999999999876554433332322222 Q ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 382 MT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) Q Consensus 382 ~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi 460 (508) .. ..++.-+...++.+|...+ . ....|.|+++.-+..|..+.++...+++.+|+ T Consensus 303 ~f~~~~l~P~~~~ie~~l~~~L-------------~------------~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~ 357 (409) T protein:vir:84 303 NFVRHTLLPWLRCIEQALDTFL-------------P------------RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGI 357 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------------c------------CCCeEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 22 2233334444444443321 0 12347778887777899999999999999999 Q ss_pred CCHHHHHHhcCCCCH-HHHHHHHHHHH---HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 461 LSKQTFLQRNYGMTD-EQAAEELAKIQ---SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 461 ~s~et~l~~~~~~~d-eea~~e~~ri~---~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |+.-+++... |+.+ +...+-+.... .++.....+.+.....++.+|. T Consensus 358 ~t~NE~R~~~-g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~gn 408 (409) T protein:vir:84 358 WSVNEVRAWE-DAPPIPEGDIHLQPMNFVPLGYVPPEEPAQEPQPNSATEGN 408 (409) T ss_pred cCHHHHHHHh-CCCCCCCcceeeecccccccccCCccccCcCCCCCCccCCC Confidence 9999988753 3332 11111110000 0111111111111112222222 No 160 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=97.85 E-value=1.5e-05 Score=47.01 Aligned_cols=442 Identities=12% Similarity=0.138 Sum_probs=192.9 Q ss_pred HHHhhhhhhhhHHhhcccc---ccCCHHHHHHHHHHH-HHhcCCCccccCccCCCccc---cccccccchHHHHHHHHHH Q lcl|Aclame:pro 14 GAAATGVTGSLSKITDDPR---ISIDPDEYVRIQTDL-DYYSDKLQYIHYQASDGIKK---KRLKNTINMAKTAARRIAS 86 (508) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~i~~~~-~~Y~g~~~~~~~~~~~~~~~---~~~~~~~n~~~~iv~~~A~ 86 (508) ++.++| -.+|++.-...+ .+.+...-..+..-. .+|....+ +...-...... -|.....+-....++..++ T Consensus 1 ~~~~lf-g~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~-~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVn 78 (537) T protein:vir:10 1 MAQQLF-GFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVD-FDGTIRNDHELITRYREMVLNPECDSAVDDVVN 78 (537) T ss_pred Cccccc-cceeecccccccCCcccCCCcccccceeecccccccccc-cccccchHHHHHHHHHHHhhccchhhHHHHhhc Confidence 333333 122222211111 111111111111111 12211111 10000000000 0011111222333444433 Q ss_pred hhh-----cCcceEeeCC---cHH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEE Q lcl|Aclame:pro 87 VVF-----NEKAEIHVKD---NNE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWV 149 (508) Q Consensus 87 ll~-----~e~~~i~~~~---~~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v 149 (508) =+. .+|+.+.+++ ++. ..+..+.++.--+|.++..+.+.....-|..+||-++|. |-..+.++ T Consensus 79 eaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~l 158 (537) T protein:vir:10 79 ETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYV 158 (537) T ss_pred ceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeee Confidence 221 2355666543 222 234456666666899999999999999999999999984 44568889 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEE-EEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTL-LEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~-lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) +|.++-++..--.+.....-+. +.. ..++.. .|++.+...| . + .+..-|.++|-+.+- T Consensus 159 DPr~i~~vR~i~~~~~~~~~~~-----~~~-~~v~~~~~eyf~ynp~g--~-----~---~~~~~~vkI~~dAI~----- 217 (537) T protein:vir:10 159 DPRKIRKVTEYEAKRPEALRTQ-----DLN-QQLTQQSASYFLYNPKG--L-----K---NSTNQGMKIAPDSIA----- 217 (537) T ss_pred CCccceeeEeecccCCccceEE-----ecc-eeeeecccceeeecccc--c-----c---ccCCCceeccHhhee----- Confidence 9999877632110000000000 000 001100 1222111111 1 0 011113333321110 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch--------- Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP--------- 296 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~--------- 296 (508) +..+|+- +...+..+|-+.+|.--...|=-.-+.+ .+--|.-..|||- .- T Consensus 218 ---y~hSGl~---------------d~n~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAe 279 (537) T protein:vir:10 218 ---YCHSGIQ---------------DLNKNMVLSHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAE 279 (537) T ss_pred ---eecccce---------------eCCCCeeeeeehhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHH Confidence 0011211 1112344566666555444444333332 2223455566663 11 Q ss_pred HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 297 GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGL 358 (508) Q Consensus 297 ~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~ 358 (508) .+++ ||..++.. .+++.|..+. -++..+.-|+++..--.. .-+..++-+.+.++...+. T Consensus 280 qYlr~iM~k~KNklVYDa~TGev--~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnl-gem~DV~YF~kKLy~aLnV 356 (537) T protein:vir:10 280 QYLREVMGRYRNKLVYDANTGEI--KDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNL-GELEDVKYFQKKLYKALNV 356 (537) T ss_pred HHHHHHHHhccceEEEeccCcee--cccchhhhhhhhhcccccCCCcccceeeccccCCc-ChHHHHHHHHHHHHHHhCC Confidence 1110 23333332 1222222221 122233346665543222 2346677778888888888 Q ss_pred Cchhccccccc-cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 359 STGTFSYSNDG-VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 359 s~~~~~~~~~~-~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) +.+-+..+++. ..-++||.-..-.....+..++..|..-|.++++.=|.|-. .+. .-.+..... .|.++| T Consensus 357 P~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKg---iit----~eeW~~i~~--~I~~~f 427 (537) T protein:vir:10 357 PSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILKG---ICS----IEEWEEMKE--HIQFDF 427 (537) T ss_pred CccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCC----HHHHHHHhh--cceEEe Confidence 88877665432 33456777666555666666777777777777665443311 111 111111122 344444 Q ss_pred C--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc---ccccCCCC Q lcl|Aclame:pro 438 D--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG---RSAILNGG 505 (508) Q Consensus 438 ~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~---~~~~~~~~ 505 (508) . ....+=.+.++-+.+. +. ..+ ..|.+++.++....||+|.+++-++|++|....-..++ ..+.++.+ T Consensus 428 ~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~ 507 (537) T protein:vir:10 428 IADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIG 507 (537) T ss_pred eecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccCCC Confidence 4 3333333333322211 11 112 45888888999999999999999999998754322111 11222222 Q ss_pred CCC Q lcl|Aclame:pro 506 DGE 508 (508) Q Consensus 506 ~g~ 508 (508) +++ T Consensus 508 ~~~ 510 (537) T protein:vir:10 508 DEE 510 (537) T ss_pred Ccc Confidence 222 No 161 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=97.80 E-value=1.8e-05 Score=46.56 Aligned_cols=372 Identities=10% Similarity=0.064 Sum_probs=152.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--H Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--K 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~ 78 (508) ||||++.|.-- .+ +.... ..|..... .+++.. ...+... .....+..| . T Consensus 1 M~~f~~~~~~~----------~~-------~~~~~--------~~~~~~~~--~~~~~~-~~~~~~v-~~~~~~~~~~v~ 51 (386) T protein:vir:48 1 MPIFNITNLAT----------ES-------PPISQ--------GGFFDITD--PDFLST-LNGSEWV-SAESALRNSDLF 51 (386) T ss_pred Ccccccccccc----------cc-------ccccc--------cccccccc--chhccc-ccCCcee-chhhhhcchHHH Confidence 99998654320 00 00000 00000000 011110 0001100 000111222 2 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYP 156 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~P 156 (508) ..++.+|+-+-.=|+.+. +.. .+..+..--.........+.++...+..|.+++.+..|. |. +.+.+++|+.+-+ T Consensus 52 ~~i~~ia~~ia~~p~~~~--~~~-~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v 128 (386) T protein:vir:48 52 SIINQLSNDLATVKLTAS--RKQ-LQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSF 128 (386) T ss_pred HHHHHHHHhhccCceeec--cch-hHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEE Confidence 334444444433243333 222 222222222112233445556777888898887776664 44 3577788888765 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) .....+.. ..|. + ... +. ..|..+ .++. .+ T Consensus 129 ~~~~~~~~-----------------~~y~-~---~~~--~~--------------~~~~~~---~~~~-----~e----- 158 (386) T protein:vir:48 129 NRLDNKDG-----------------IYYN-I---TFD--DP--------------RIPPKQ---HVPQ-----GD----- 158 (386) T ss_pred EEcCCCce-----------------EEEE-E---Eec--Cc--------------ccccee---EecC-----cc----- Confidence 42222211 0111 0 000 00 000000 0000 00 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeechHHhcCCCCCCccCCcc--- Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQPGMLRFDDEHKPTFDTE--- 312 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~~~~~~~~~~~~~~~--- 312 (508) +.+++.+-++ +...|+|.+.-+...|.....+.....+-|+. +.+..++...- ..+++....+... T Consensus 159 -----vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~-~~~~e~~~~~~~~~~~ 228 (386) T protein:vir:48 159 -----VLHFKLLSVD----GGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKG-GGLLDFKTKLSRSRQA 228 (386) T ss_pred -----EEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHHHH Confidence 2344433221 33468998887777776655444444555554 45555542100 0011111001000 Q ss_pred --cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH-HHHHHHHHHhhHHH Q lcl|Aclame:pro 313 --QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE-VVSNNSMTYQTRSS 389 (508) Q Consensus 313 --~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte-i~~~~~~l~~~~~~ 389 (508) ......+-. +++..++.++.+....++++..+...+.|....|++|..+|+..+.. ++.+ ...-+. .++.- T Consensus 229 ~~~n~g~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-~~e~~~~~~~~---~~l~P 302 (386) T protein:vir:48 229 MKQMQGGPLVL--DDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQ-SSLEMSLDLYN---KAVSR 302 (386) T ss_pred hhcCCCCceec--CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc-cHHHHHHHHHH---HHHHH Confidence 000000111 12223555555444556777778888999999999999998654432 2221 111111 11222 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh Q lcl|Aclame:pro 390 YLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR 469 (508) Q Consensus 390 ~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~ 469 (508) ....++..|...+ +. ++.+++...+-.|....+....+++.+|++++-+++.. T Consensus 303 ~~~~ie~~l~~~l------------~~---------------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~ 355 (386) T protein:vir:48 303 YLRPFLSELSQKL------------SC---------------DVDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYI 355 (386) T ss_pred HHHHHHHHHHHhh------------cc---------------hhhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHH Confidence 2222333332211 00 11112222233455666777778889999999998864 Q ss_pred --cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 --NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 --~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+++.+.++ .+. +.. ...+..+ |+.+|+ T Consensus 356 lg~~~~~~~~~----~~~--~~~---~~~~~~g--Gd~~~~ 385 (386) T protein:vir:48 356 LQQAEILPKEL----PEG--ENP---NKTTLKG--GEINGE 385 (386) T ss_pred hhcCCCCCccc----hhh--cCC---CCCccCC--CCCCCC Confidence 455554332 221 111 0111111 122222 No 162 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=97.79 E-value=1.9e-05 Score=46.47 Aligned_cols=399 Identities=13% Similarity=0.088 Sum_probs=156.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhc--cccccCCHHHHHHHH-H-HHHHhcCCCccccCccCCCccccccccccc- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITD--DPRISIDPDEYVRIQ-T-DLDYYSDKLQYIHYQASDGIKKKRLKNTIN- 75 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~i~-~-~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n- 75 (508) ||||+++|+. +. ........++.... ........+....+. - +..|..+. ...|.... ....+. T Consensus 1 Mgl~d~~r~~--~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~g~~v~-~~~al~~ 69 (431) T protein:vir:10 1 MGLFDFIRRE--KQ-PEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRG-------ELNGGTGR-ETRALRN 69 (431) T ss_pred CcchhhhhcC--cc-cccccccccccccccccccccccccccccccchHHHHhhccC-------ccCcceec-hhhhhcc Confidence 9999976652 10 00000111110000 000000000000000 0 11122111 11111100 001111 Q ss_pred -hHHHHHHHHHHhhhcCcceEeeCCcH---HHHHHHHHHHHh--hh---HHHHHHHHHHHHhhcCCEEEEEEEeCCee-E Q lcl|Aclame:pro 76 -MAKTAARRIASVVFNEKAEIHVKDNN---EADKFLNDVLED--ND---FKNKFEEALEKGVALGGFAMRPYIDGNHI-K 145 (508) Q Consensus 76 -~~~~iv~~~A~ll~~e~~~i~~~~~~---~~~~~l~~~l~~--n~---f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~ 145 (508) --...++.+|+-+-+=|+.+--.++. ..+.-+..+|.. |. -..-...++...+..|.+++.+..++|++ . T Consensus 70 ~~V~~ci~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~ 149 (431) T protein:vir:10 70 MAVLRCVTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIR 149 (431) T ss_pred HHHHHHHHHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceEE Confidence 11233344444443335544211110 111123333321 11 11223445677777899988888886654 4 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +-.++|..+-+...+++.+ +|.. +.. .|. .+. ++. T Consensus 150 L~pl~~~~v~~~~~~~~~~------------------~y~~----~~~-~g~------------------~~~---~~~- 184 (431) T protein:vir:10 150 LIPMDRGSAKGRLTSTWQI------------------VYDY----TTP-TGD------------------KIE---LPA- 184 (431) T ss_pred EEEEcCceeEEEEcCCCeE------------------EEEE----EeC-Cce------------------EEE---Ech- Confidence 5556666665542222211 1110 000 010 000 000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHH-HHHHh-ccceeee--chHHhcC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFI-WEIRL-GQKHIAV--QPGMLRF 301 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~-~e~~~-~~~~i~v--~~~~~~~ 301 (508) .+ ..++|.+-. +...|+|.+.-+...|.-.. ...++. +-|+. +++.-++ |..+ T Consensus 185 ----~d----------ViHir~~~~-----dg~~G~spi~~~~~~i~~~~-~~~~~~~~~f~ng~~p~gil~~~~~l--- 241 (431) T protein:vir:10 185 ----RE----------VFHLRDLSI-----DGVSGVSRVKLSGNALELAE-QAERAASRTFRTGVMAGGAIEVPKEL--- 241 (431) T ss_pred ----hh----------EEEecCcCC-----CCcccccHHHHHHHHHHHHH-HHHHHHHHHHhccCCccEEEecCCCC--- Confidence 00 123332212 12468898888877776444 444444 44564 3444433 1111 Q ss_pred CCCCCccCCcc-cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccch-HH Q lcl|Aclame:pro 302 DDEHKPTFDTE-QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKT-AT 374 (508) Q Consensus 302 ~~~~~~~~~~~-~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T-At 374 (508) +++....+... ...|.+.. .+ -+++..++.++......+.++..+...++|....|++|..++...++..+ .+ T Consensus 242 s~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e 321 (431) T protein:vir:10 242 SDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWGSGIE 321 (431) T ss_pred CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCCccccHH Confidence 11110000000 01111100 00 01222345455444455666766777889999999999999876543222 22 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAK 454 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~ 454 (508) +....+ ...++.-..+.++..|..- ++... ....+.+.|+++.-+..|..+.++...+ T Consensus 322 q~~~~f--~~~tL~P~~~~ie~~ln~~------------Ll~~~--------~~~~~~~~fd~~~llr~d~~~r~~~~~~ 379 (431) T protein:vir:10 322 QLAIFF--IQYGLSHWFVSWEQAAARA------------FLPEK--------MLGQRQFKFNEGALLRGTLNDQAAFFSK 379 (431) T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhh------------ccChh--------hcCCceEEEechhhhccCHHHHHHHHHH Confidence 111111 1122222333333333221 11100 0012456777777678899999888888 Q ss_pred HHhCCC----CCHHHHHHh--cCCCCHHHHHHHHHHHHHhccCCCCCCcccc Q lcl|Aclame:pro 455 VLAIGA----LSKQTFLQR--NYGMTDEQAAEELAKIQSEAPTDTFEGGRSA 500 (508) Q Consensus 455 ~~~~Gi----~s~et~l~~--~~~~~deea~~e~~ri~~E~~~~~~~~~~~~ 500 (508) ++..|+ |+.-+++.. +|-.++...++-..-.......+..+++++. T Consensus 380 ~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 380 ALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGSGDEPPATT 431 (431) T ss_pred HHhcccccCccCHHHHHHHhCCCCCCCccccceecccccccCCCCCCCCCCC Confidence 887765 777777654 3333222222211101111111111111111 No 163 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=97.77 E-value=2e-05 Score=46.31 Aligned_cols=407 Identities=9% Similarity=0.087 Sum_probs=162.5 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHH--HHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRI--QTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i--~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||. .. .+|.++++...|.-..--...+ ..+.+||+- + + +.....+...+....... T Consensus 1 ~~~-----------~~---~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~p--p-~-----~~~~la~l~~~n~~v~sc 58 (542) T protein:vir:41 1 MFN-----------YH---LSIRSLEKYKAIKREEVESQALGETRFEEYVEP--K-V-----NPLVLLSLLQVNPYHASA 58 (542) T ss_pred Ccc-----------cc---ccccccccchhhhhccccccccccccCCccccC--C-C-----CHHHHHHHHhhcHHHHHH Confidence 332 11 1222222211111000000000 011122211 1 1 111111111122455677 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--NDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYP 156 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~P 156 (508) ++.+|+.+-+-|..+.-++. ..+...+-+ ..+...+..++.+.+..|.+++.+..+. |++ .+.+++|..+.+ T Consensus 59 I~~ia~~IA~l~~~~~~~~~----~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v 134 (542) T protein:vir:41 59 CSIKANDIIRTGYILEGDDE----GVVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRV 134 (542) T ss_pred HHHHHHHHhhCceeeecccc----hhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEE Confidence 78888777776666653222 223333321 1234455667778888999998887775 544 578888888765 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) . .+.+.. . .+. +.....++..+.+ .+.+... .|... ..+| T Consensus 135 ~-~d~~~~-----~-~~~--~~~~~~~~~~y~~-----------~~~~~~~-----~g~~~--~~~~------------- 174 (542) T protein:vir:41 135 H-KDGSRY-----R-QTW--DGVNITHFKDYRY-----------EGEINPE-----TGEDQ--DSVG------------- 174 (542) T ss_pred E-EcCCee-----E-eee--cCCcceeEEeecc-----------ccccccc-----ccccc--cccC------------- Confidence 3 333321 1 111 1111111110000 0000000 00000 0000 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHH-HHhc-cce--eeechHHhcCCCCCC------ Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWE-IRLG-QKH--IAVQPGMLRFDDEHK------ 306 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~--i~v~~~~~~~~~~~~------ 306 (508) .--..+++.+- ..+..+|+|.+..+...|... .....+... |++| .+. +.++..+.+....+. T Consensus 175 --~~eIiHir~~~----~~~~~~Glspi~~~~~~i~~~-~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~ 247 (542) T protein:vir:41 175 --ANELVFIHIPS----PVCSYYGVPRYVSAAPAILAM-QKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTG 247 (542) T ss_pred --cccEEEecCCC----CCCCcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHH Confidence 00123444332 223557999988877776543 344445443 5654 444 334433221110000 Q ss_pred -----ccCC----c---c--cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-- Q lcl|Aclame:pro 307 -----PTFD----T---E--QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-- 370 (508) Q Consensus 307 -----~~~~----~---~--~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-- 370 (508) ..+. . + .-++.....+.+++..++.++......++.+..+...++|....|++|..+|+..++. T Consensus 248 ~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n 327 (542) T protein:vir:41 248 RTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLG 327 (542) T ss_pred HHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccc Confidence 0000 0 0 0011111112222223444444444556677777778899999999999998865432 Q ss_pred -chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 371 -KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 371 -~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) .++++.. ..-...++.-+.+.++..|...+ .... ...+.+.|+.++-+..|. . T Consensus 328 ~sn~Eq~~--~~f~~~tL~P~~~~ie~~ln~~L------------~~~~---------~~~~~~~f~~~~ll~~d~---~ 381 (542) T protein:vir:41 328 GNFAEVTR--RTYYESVVRPQQNIISSILTDFF------------QVKF---------NPKTRFKFNDETLLESDS---V 381 (542) T ss_pred cccHHHHH--HHHHHHHHHHHHHHHHHHHHhhc------------cccc---------CCceEEEecchhhcchHH---H Confidence 2332221 11112233333333444333221 1000 012344444444444443 3 Q ss_pred HHHHHHHhCCCCCHHHHHHhcCCCCHHH-H--------HHHHHHHHHh-c--------cCCCCCCcccccC-------CC Q lcl|Aclame:pro 450 EEDAKVLAIGALSKQTFLQRNYGMTDEQ-A--------AEELAKIQSE-A--------PTDTFEGGRSAIL-------NG 504 (508) Q Consensus 450 ~~~~~~~~~Gi~s~et~l~~~~~~~dee-a--------~~e~~ri~~E-~--------~~~~~~~~~~~~~-------~~ 504 (508) +....++++|+|+..+++.++++++.-+ . .+.++..+.+ + .-....++..... .. T Consensus 382 ~~~~~~v~~GilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~ 461 (542) T protein:vir:41 382 RNCALLVQSGVLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKLSAEE 461 (542) T ss_pred HHHHHHHhCCCCCHHHHHHhhCCCCCCCccccccccccccccccCCcCCCCCchhhhhhcccccCccccccccccccchh Confidence 3455678899999999987665554310 0 0000000000 0 0000000000000 00 Q ss_pred CCCC Q lcl|Aclame:pro 505 GDGE 508 (508) Q Consensus 505 ~~g~ 508 (508) ..|+ T Consensus 462 ~~~~ 465 (542) T protein:vir:41 462 KKKK 465 (542) T ss_pred hccc Confidence 0111 No 164 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=97.76 E-value=2.2e-05 Score=46.17 Aligned_cols=460 Identities=12% Similarity=0.036 Sum_probs=196.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCcccc---Ccc---CCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIH---YQA---SDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~---~~~---~~~~~~~~~~~~~ 74 (508) |+= + -.+.. +.|++-.+ .+..++..-...|+.+|.---|... ... .....+...++-= T Consensus 1 m~~-d-~~~~~----------~~l~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~d 64 (549) T protein:vir:10 1 MTN-D-DAKIL----------QALNADHG----RMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMFD 64 (549) T ss_pred CCc-c-hHHHH----------HHHHHHHH----HHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCccccccccccc Confidence 221 1 01111 11111111 2233455556777777754433221 001 1111111122222 Q ss_pred chHHHHHHHHHHhhhcC--c-----ceEeeCCcH-----HHHHHHHH-------HH--HhhhHHHHHHHHHHHHhhcCCE Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNE--K-----AEIHVKDNN-----EADKFLND-------VL--EDNDFKNKFEEALEKGVALGGF 133 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e--~-----~~i~~~~~~-----~~~~~l~~-------~l--~~n~f~~~~~~~~~~a~~~G~~ 133 (508) .-+...++.+|+.|++- | .++.+.+.+ ...++|++ ++ ..++|...+.++..+...+|.+ T Consensus 65 stg~~a~~~LAs~l~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta 144 (549) T protein:vir:10 65 STAPLALRNFVAAMDSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPG 144 (549) T ss_pred chHHHHHHHHHHHHHhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcce Confidence 45666666666666543 1 234443321 22344443 22 2467999999999999999999 Q ss_pred EEEEEEeC-CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEE-EEE-------e-ec--------CCcEEEEEEEEEEEeC Q lcl|Aclame:pro 134 AMRPYIDG-NHIKIAWVRADQFYPLQSN-TNDISEAAIASR-TQR-------T-ES--------NQTKYYTLLEFHQWQD 194 (508) Q Consensus 134 ~~~~~~d~-~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~-~~~-------~-~~--------~~~~~yt~lE~h~~~~ 194 (508) .+.+--|. +.+++..+|-.+++- ..| +|++ ..+|... +.. + +. .+.+.+.. T Consensus 145 ~l~~~~~~~~~~~f~~~pl~~~~v-~~d~~G~v-d~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~-------- 214 (549) T protein:vir:10 145 ALMIEHDVGKGIVYRNVPMQRLWF-AENNSGLI-DKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKS-------- 214 (549) T ss_pred eeEEeecCCCeeEEEEEEcCeEEE-eeCCCCCe-EEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCce-------- Confidence 87766665 456888999999874 455 4455 4444321 100 0 00 00011111 Q ss_pred CceEEEEEEEEecCCccc--c-CccccccccccccCCCccee--ecCCCcceEEEecCCccccccCCCcCCcchhhhHHH Q lcl|Aclame:pro 195 NGSYQITNELYKSDSPDI--V-GNQVPLSTLPVYKELAPQVT--ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKH 269 (508) Q Consensus 195 ~g~~~I~~~ly~~~~~~~--l-G~~v~l~~~~~~~~l~~~~~--~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~ 269 (508) +.|.+.+|...+.+. . +.-.|+..+ |-....... ..|...-+|..++ =+...++.+|+|-...+.+ T Consensus 215 ---~~v~~~V~pr~~~~~~~~~~~~~pf~sv--~~e~~~~~il~esg~~e~P~~~~R----w~~~~ge~YGrgp~~~~l~ 285 (549) T protein:vir:10 215 ---AIFYHAVEPRADRDPRKLDGRNMQFASY--WLDEGRDRIVQNSGFRTFPFAIGR----FYVGTDDVYGGSPAYDAMP 285 (549) T ss_pred ---EEEEEEeecCCCCCccccccccCceEEE--EEEecCCEeeccCCcccCCcceee----eeecCCCccccchHHHHHH Confidence 222222222111100 0 011111111 000000000 0122111222111 1233467899999999999 Q ss_pred HHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHH Q lcl|Aclame:pro 270 VLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHF 348 (508) Q Consensus 270 lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~ 348 (508) -++.|+..--...... ...++.+.||++..-. + ..+.++...+......+ ...+..+...-+.......++.+ T Consensus 286 D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~-~---~~l~pgg~~~~~~~~~~--~~~~~pl~~~~~~~~~~~~i~~~ 359 (549) T protein:vir:10 286 DVRMANDMAKTNIRGAQKLVDPPLLANEDGVLD-G---FDLRSGALNWGGLNDKG--EEMVKPLLTGKQAQIGIEFAQDT 359 (549) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeccccccc-c---ceeccCCccccccCCCC--ccceeeeccccchhHHHHHHHHH Confidence 9999998766666655 4567777787653211 1 01111111222211111 12233332222334444556666 Q ss_pred HHHHHHHhCCCchhccc-cccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccccccccccc Q lcl|Aclame:pro 349 IKEFEVQIGLSTGTFSY-SNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDS 426 (508) Q Consensus 349 l~~i~~~~g~s~~~~~~-~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~ 426 (508) .+.|....-.+. |+. ..+...|||||....+...+...-.-..+ ..-|..||.-++.+....++++.. .-.. T Consensus 360 ~~rI~~af~~d~--~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~----p~~l 433 (549) T protein:vir:10 360 RQTINQWFYVTL--FQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDM----PQEL 433 (549) T ss_pred HHHHHHHHhhhh--hhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----Chhh Confidence 555544331111 111 23345899999999999988887755444 456777877777776655544321 1111 Q ss_pred ccCcceEEEEeCCCccCC-HHHHH---HHHHHHHh--CCC-------CCHHHHH---HhcCCC------CHHHHHHHHHH Q lcl|Aclame:pro 427 ASQPLDIECHFDDGVFVN-KDKQL---EEDAKVLA--IGA-------LSKQTFL---QRNYGM------TDEQAAEELAK 484 (508) Q Consensus 427 ~~~~~ei~i~f~d~i~~d-~~~e~---~~~~~~~~--~Gi-------~s~et~l---~~~~~~------~deea~~e~~r 484 (508) ..+..++.|++--.+... ....+ .+.++.+. +++ +....++ ....|+ |++|++++-+. T Consensus 434 ~~~~~~~~i~yis~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~ 513 (549) T protein:vir:10 434 IDAGADVDVEYDSPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAA 513 (549) T ss_pred hcCCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHH Confidence 112234555553322221 01111 12222221 111 2222222 233454 44555443322 Q ss_pred HHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 485 IQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 485 i~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .++.+.. ...-.+....+++.-+ T Consensus 514 ~~~qqq~-~~~~~~a~~a~~~a~~ 536 (549) T protein:vir:10 514 EAQAAQM-QQMLAAAPVAAGAIKD 536 (549) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHh Confidence 1111110 0000000000000001 No 165 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=97.73 E-value=2.4e-05 Score=45.89 Aligned_cols=406 Identities=11% Similarity=0.123 Sum_probs=164.5 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHH---HHHHHhcCCC-ccccCccCCCccccccccccchHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQ---TDLDYYSDKL-QYIHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~---~~~~~Y~g~~-~~~~~~~~~~~~~~~~~~~~n~~~ 78 (508) || +..+++...- +++++. +.+.++.+.. .|+. .+.+-....+-..+..... T Consensus 1 ~~--------------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-pp~~~~~La~~~~~n~~v~ 55 (540) T protein:vir:41 1 MF--------------NYHLSIKSLE----------KYRAIKGDTDSQALKEDRFEEYVE-PKVHPLVLLSLLQVNPYHA 55 (540) T ss_pred CC--------------CcccChhhcc----------chhhhhccccccccccCCCCcccc-CCCCHHHHHHHHHhcHHHH Confidence 11 1112211110 000111 1112222111 1110 0011000011111234556 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYP 156 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~P 156 (508) ..|+.+|+.+-+-|..+...+.. +.+++-.- ...+...+..++.+.+..|.+++.+..+. |++ .+.+++|..+-+ T Consensus 56 scI~~ia~~ia~~~~~i~~~~~~-~~~~lpN~--~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v 132 (540) T protein:vir:41 56 SACSIKANDILRTGYLIDGDDGG-VEELLRAC--RPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRV 132 (540) T ss_pred HHHHHHHHHHhcCCceEecCccc-hhhhccCC--CCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEE Confidence 77888888888888777754433 22222111 11234455566777888899988777764 554 678888888765 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) . .+..+. +...++ ...+| ...+. + ...+ ...+ |. ....++. T Consensus 133 ~-~~~~~~--------~~~~d~-~~~~~--~~~~~------~--~~~~-~~~~----g~--------------~~~~~~~ 173 (540) T protein:vir:41 133 H-RDGSRY--------MQTWDG-IHVTY--FKDYR------Y--EGEV-NPDN----GE--------------DQDGVGA 173 (540) T ss_pred e-EcCcee--------EeeecC-ceeee--eeccc------c--ccee-eccc----cc--------------cceeecc Confidence 3 222211 000111 11111 00000 0 0000 0000 00 0000000 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceee--echHHhcCCCCC-------C Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIA--VQPGMLRFDDEH-------K 306 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~--v~~~~~~~~~~~-------~ 306 (508) --..++|.+-+ .+..+|+|.+..+...|.....+-....+-|+.| .+..+ ++..+.+....+ . T Consensus 174 ---~eViHir~~~~----~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~ 246 (540) T protein:vir:41 174 ---NEIIFIHLPSP----ICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGR 246 (540) T ss_pred ---cceEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHH Confidence 01234443321 2345799988877766665544333334445654 34322 332221110000 0 Q ss_pred ccCC-----------ccc--ceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc--- Q lcl|Aclame:pro 307 PTFD-----------TEQ--NVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV--- 370 (508) Q Consensus 307 ~~~~-----------~~~--~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~--- 370 (508) ..+. .+. -++.......+++..++.++......++.+..+...+.|....|++|..+|...++. T Consensus 247 ~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~ 326 (540) T protein:vir:41 247 TVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGG 326 (540) T ss_pred HHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCc Confidence 0000 000 011111112223334555555555567778888888999999999999998764332 Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 371 KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLE 450 (508) Q Consensus 371 ~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~ 450 (508) .++++....+ .-.++.-....++..|...+. ... ... +.|.|+..-....+ .++ T Consensus 327 sn~eq~~~~f--~~~tL~P~~~~ie~~ln~~L~------------~~~---------~~~--~~i~f~~~~ll~~D-~~~ 380 (540) T protein:vir:41 327 NFAEVARRTY--YESVVRPQQEIVSSVLTDFIQ------------LKL---------DPG--ARFVFNEEILMESE-FVH 380 (540) T ss_pred ccHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh------------hcc---------CCc--eEEEecchhhcchH-HHH Confidence 2333322222 123333344444444443221 000 012 33455554444332 344 Q ss_pred HHHHHHhCCCCCHHHHHHhcCCCC---HHH------HHHHHHHHHHhccCCCCCC--c--------------ccccCCCC Q lcl|Aclame:pro 451 EDAKVLAIGALSKQTFLQRNYGMT---DEQ------AAEELAKIQSEAPTDTFEG--G--------------RSAILNGG 505 (508) Q Consensus 451 ~~~~~~~~Gi~s~et~l~~~~~~~---dee------a~~e~~ri~~E~~~~~~~~--~--------------~~~~~~~~ 505 (508) .+..++.+|+|+.-+++.+.+++. |.- ....++..+.+.+...+.. . .+...+.. T Consensus 381 ~~~~lv~~G~lT~NE~Re~L~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 460 (540) T protein:vir:41 381 NYALLVQCGVLTPSEVREKLFGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDK 460 (540) T ss_pred HHHHHHhCCCCCHHHHHHHhCcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCccccccccccc Confidence 456678999999999987655443 210 0111111111000000000 0 00000000 Q ss_pred CCC Q lcl|Aclame:pro 506 DGE 508 (508) Q Consensus 506 ~g~ 508 (508) .++ T Consensus 461 ~~~ 463 (540) T protein:vir:41 461 KKK 463 (540) T ss_pred ccc Confidence 011 No 166 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=97.57 E-value=4.4e-05 Score=44.49 Aligned_cols=401 Identities=12% Similarity=0.082 Sum_probs=164.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccc-c-chHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNT-I-NMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~-~-n~~~ 78 (508) |+ ..+.|...++ ..++.+.++. .+..+.. ..|. .+.|.... ....+..... .+++ + .--. T Consensus 1 ~~------~~~~~~~~~~--~~~~~~~~g~-~~s~~~~-----~~~~-~~~~~~~~-~g~~v~~~~a--l~~~~v~~ci~ 62 (437) T protein:vir:10 1 MK------QGKQRALGRI--KSSFLKWLGV-PISLTDG-----SFWS-AWGGMGSS-SGETVTADSA--LQLSAVWSCVR 62 (437) T ss_pred CC------cchhhhhhhh--HHhhhhhcCC-cccCCch-----hHHH-hhcccccC-CCceechHhh--hccHHHHHHHH Confidence 33 2222222221 1222233331 2333221 1122 22232211 0111111000 0110 0 0113 Q ss_pred HHHHHHHHhhhcCcceEee-CCc--H--HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHV-KDN--N--EADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIA 147 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~-~~~--~--~~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~ 147 (508) .|++..|++ |+.+-- +.+ . ..+-.+..+|.. .....-.+.++..++-.|.+++.+..+.|++ .+. T Consensus 63 ~Ia~~ia~l----p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g~~~~L~ 138 (437) T protein:vir:10 63 LIAETIATL----PLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAGVLIGLE 138 (437) T ss_pred HHHHHHhhC----ceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEE Confidence 455555543 443311 110 0 001122333321 1223334455667788899988877777765 466 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) .++|+.+-+....++.+ .|+. . .. +|. . ..| +-. T Consensus 139 ~l~p~~v~i~~~~~g~~------------------~y~~---~-~~-~g~-~---~~~------------~~~------- 172 (437) T protein:vir:10 139 LMLPQRTTVKRLTSGAL------------------QYTY---R-NV-DGT-V---STL------------AED------- 172 (437) T ss_pred EEcCcceEEEECCCCeE------------------EEEE---E-ec-Cce-E---EEE------------ccc------- Confidence 67777766542222211 1110 0 00 010 0 000 000 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech-HHhcCCCCC Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP-GMLRFDDEH 305 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~-~~~~~~~~~ 305 (508) + ..+++.+-. +...|+|.+.-+...|......-....+-|+. +++.-++.- ..+ +++. T Consensus 173 ---d----------Iih~r~~~~-----d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l--~~e~ 232 (437) T protein:vir:10 173 ---D----------VFHVRGFSL-----DGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQIL--QKEK 232 (437) T ss_pred ---c----------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC--CHHH Confidence 0 223442211 23579998887777776655444444555565 455555421 001 1111 Q ss_pred CccCCcc-cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHH Q lcl|Aclame:pro 306 KPTFDTE-QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSN 379 (508) Q Consensus 306 ~~~~~~~-~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~ 379 (508) ...+... ...|.+.. .+ -+++..++.++......++.+..+...+.|....|++|..+|+...+..+.+.+... T Consensus 233 ~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~ 312 (437) T protein:vir:10 233 RAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQ 312 (437) T ss_pred HHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHH Confidence 0000000 00111100 00 012223555555545556677777778899999999999998765543333323322 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .... ++.+|..++..|....+.. ++.... .....+.|+++.-+..|.++.++...+++.+| T Consensus 313 ~~~f----------~~~tl~P~~~~ie~~l~~k-ll~~~e--------~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G 373 (437) T protein:vir:10 313 TLGF----------LTFTLRPWLTRIEQAARRS-LLRPGE--------RDQFYAEFSVEGLLRADSAGRAAFYSTMTQNG 373 (437) T ss_pred HHHH----------HHHHHHHHHHHHHHHHHhh-ccCccc--------cCceEEEEechhhhccCHHHHHHHHHHHHhCC Confidence 2222 2233333333222111110 111110 01234667777767789999999999999999 Q ss_pred CCCHHHHHHhc--CCCCHHH----HHHHHHHHHHhccCCCCCCcccccCCC--------CCCC Q lcl|Aclame:pro 460 ALSKQTFLQRN--YGMTDEQ----AAEELAKIQSEAPTDTFEGGRSAILNG--------GDGE 508 (508) Q Consensus 460 i~s~et~l~~~--~~~~dee----a~~e~~ri~~E~~~~~~~~~~~~~~~~--------~~g~ 508 (508) +|+.-+++... +-+.... +..-+..+..-.....+..+..+..++ ++.| T Consensus 374 ~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 436 (437) T protein:vir:10 374 LMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEKTRATQE 436 (437) T ss_pred CcCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCcCCCcchhccccccCCCCCCCCcccc Confidence 99999988753 2222111 010111111111111111111111111 1111 No 167 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=97.46 E-value=6.3e-05 Score=43.63 Aligned_cols=401 Identities=9% Similarity=0.016 Sum_probs=157.6 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--HHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--KTA 80 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~~i 80 (508) |.+.|.+.+|+....- + .....|.+|.... +...+..+.... ....++.| -.. T Consensus 1 ~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~g~~---~~~~~~~~~~~~-~~~a~~~~~v~~~ 55 (460) T protein:vir:10 1 MANRIIRALRELTGLD-----------------N----KFNDAFIKYIGQT---FTKYDNNGKTYL-EQGYNINPDVYSC 55 (460) T ss_pred CchhHHHHHhhhhccC-----------------C----CchHHHHHhhccc---cCCCccchhhhh-HHHHhcchHHHHH Confidence 7777777665443220 0 0122344444322 111111111100 00111222 223 Q ss_pred HHHHHHhhhcCcceEeeCCcHH-H-------------------------------HHHHHHHHHh-h---hHHHHHHHHH Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNE-A-------------------------------DKFLNDVLED-N---DFKNKFEEAL 124 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~-~-------------------------------~~~l~~~l~~-n---~f~~~~~~~~ 124 (508) ++.+|+-+-+=|..+--...+. . ...+..++.. | ......+.++ T Consensus 56 v~~ia~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~ 135 (460) T protein:vir:10 56 ISQMAAKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYK 135 (460) T ss_pred HHHHHHhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHH Confidence 3444444433344432111100 0 0011111111 1 1223344556 Q ss_pred HHHhhcCCEEEEEEEeC-----Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceE Q lcl|Aclame:pro 125 EKGVALGGFAMRPYIDG-----NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSY 198 (508) Q Consensus 125 ~~a~~~G~~~~~~~~d~-----~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~ 198 (508) ...+..|.+++.+..+. |.+ .+..++|+.+-+...+++.... +.+ ....|+ +..+|.. T Consensus 136 ~~lll~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~----~~~------~~~~~~------~~~~g~~ 199 (460) T protein:vir:10 136 TYMRLNGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLLS----TDS------PIKSYM------LIQGDQF 199 (460) T ss_pred HHHhhcCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCceee----eee------eeeEEE------EecCcee Confidence 67888898887666532 444 4667888887765333332210 000 000010 1111110 Q ss_pred EEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCC-cCCcchhhhHHHHHHHHHHH Q lcl|Aclame:pro 199 QITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIES-PLGLGVVDNAKHVLDDINDT 277 (508) Q Consensus 199 ~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~s-plG~S~~~~~~~lid~lD~~ 277 (508) ..++-. -..|+|.+-+++...++ ..|+|.+.-+...|...... T Consensus 200 ----------------~~~~~~--------------------evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~~~ 243 (460) T protein:vir:10 200 ----------------IEFNED--------------------EVIHTKYANPNFDLQGSHLYGMSPIRAILRNINSQNST 243 (460) T ss_pred ----------------EEeccc--------------------ceEEEecCCCCcccccCccccccHHHHHHHHHHHHHHH Confidence 000000 02345554444433333 36999988888777776655 Q ss_pred HHHHHHHHHhc-cceeeec-hHHhcCCCCCCcc----CC----cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHH Q lcl|Aclame:pro 278 HDQFIWEIRLG-QKHIAVQ-PGMLRFDDEHKPT----FD----TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDH 347 (508) Q Consensus 278 ~s~~~~e~~~~-~~~i~v~-~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~ 347 (508) -....+-|+.| .+..++. ..-+ +++.... |. ...+....+.. +++..++.++......+..+..+. T Consensus 244 ~~~~~~~f~ng~~~~~i~~~~~~l--~~e~~~~~~~~~~~~~~g~~n~g~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~ 319 (460) T protein:vir:10 244 IDNNVKTMQNGGVFGFIHGGSTGL--TQPQADSLKQRLTEMDKSPDRLSQIAGA--SGEIAFTKISLNTDELKPFDYLKY 319 (460) T ss_pred HHHHHHHHhcCCCcceeeecCCCC--CHHHHHHHHHHHHHHhcCccccCCceec--CCCceEEEccCChhHHHHHHHHHH Confidence 54445556664 3333321 1100 1111000 10 00011111111 122235555544445567777778 Q ss_pred HHHHHHHHhCCCchhccccccccchHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc Q lcl|Aclame:pro 348 FIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDS 426 (508) Q Consensus 348 ~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~ 426 (508) ..++|....|++|..+|...++..+...+....... ..++.-+...++..|..-+ +... . T Consensus 320 ~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl------------~~~~-------~ 380 (460) T protein:vir:10 320 DQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKF------------IKRF-------K 380 (460) T ss_pred HHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cCcc-------c Confidence 888999999999999987654332211111111111 1233333333443333211 1111 0 Q ss_pred ccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHhccC-CCCCCcccccCC Q lcl|Aclame:pro 427 ASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAEELAKIQSEAPT-DTFEGGRSAILN 503 (508) Q Consensus 427 ~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea~~e~~ri~~E~~~-~~~~~~~~~~~~ 503 (508) ....+.|.++|+. +.. ..+.......++..|+|+..+++... |-++++...+-+--.. -++. ...+....+..+ T Consensus 381 ~~~~~~i~~d~~~-l~~-l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n-~~~~~~~~~~~~~~~~n 457 (460) T protein:vir:10 381 GYENAVIEWDISE-LPE-MQTDMVAMASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSN-KVRIDDVSNNLIDSAFN 457 (460) T ss_pred ccCCceEEeecch-hhh-HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeeccc-ccchhhcccccCCCccc Confidence 1122345555544 222 12233344556788999999888653 3333222211110000 0000 000000000000 Q ss_pred CCC Q lcl|Aclame:pro 504 GGD 506 (508) Q Consensus 504 ~~~ 506 (508) .+- T Consensus 458 q~~ 460 (460) T protein:vir:10 458 QNQ 460 (460) T ss_pred CCC Confidence 000 No 168 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=97.41 E-value=7.3e-05 Score=43.25 Aligned_cols=452 Identities=11% Similarity=0.086 Sum_probs=186.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |-=-++ ..+. ..++++-.+ .+..++..-...|+.+|.--.|-+-............++-=.-+... T Consensus 1 m~~~~~--~~~~--------~~~~~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a 66 (532) T protein:vir:99 1 MAEVEK--TGFA--------ADGAAAAYN----RLKNDRGAYETRAEDCATYTIPSVFPSATADGSTSYTTPWQSIGARG 66 (532) T ss_pred Ccchhh--cccc--------HHHHHHHHH----HHHHHhhHHHHHHHHHHHHhhhcccCCCCCcchhhccccccchHHHH Confidence 111110 0000 011111111 11223333355566666533332211111111111122222445556 Q ss_pred HHHHHHhhhcC--c-----ceEeeCCc------------HHHHHHH-------HHHHHhhhHHHHHHHHHHHHhhcCCEE Q lcl|Aclame:pro 81 ARRIASVVFNE--K-----AEIHVKDN------------NEADKFL-------NDVLEDNDFKNKFEEALEKGVALGGFA 134 (508) Q Consensus 81 v~~~A~ll~~e--~-----~~i~~~~~------------~~~~~~l-------~~~l~~n~f~~~~~~~~~~a~~~G~~~ 134 (508) ++.+|+.|++- | +++.+++. +..+++| ...+..++|...+.++..+..+.|.+. T Consensus 67 ~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ 146 (532) T protein:vir:99 67 LNNLASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVL 146 (532) T ss_pred HHHHHHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEe Confidence 66666655433 1 23333221 1123333 445667899999999999999999998 Q ss_pred EEEEEeC----CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEee------------cCCcEEEEEEEEEE---EeC Q lcl|Aclame:pro 135 MRPYIDG----NHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRTE------------SNQTKYYTLLEFHQ---WQD 194 (508) Q Consensus 135 ~~~~~d~----~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~~------------~~~~~~yt~lE~h~---~~~ 194 (508) +.+-.++ ....+..+|-.+++ +..| +|++..+++..++.... ..+++.+..+++++ +.+ T Consensus 147 l~~~~~~~~~~~~~~f~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~ 225 (532) T protein:vir:99 147 LYIPSTEQVEGQSNAPKLYKLHNFV-VERDAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDP 225 (532) T ss_pred EEecccccccCcccceEEEEcCeEE-EeeCCCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecC Confidence 7554432 34568888888866 4444 56665655433322100 00112233333322 222 Q ss_pred Cce-EEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 195 NGS-YQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 195 ~g~-~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) ++. |...+++ + |..+.+... .| .+...|-..+.| +...++.+|+|--..+.+-++. T Consensus 226 ~~~~~~~~~~~----~----g~~~~~~~~-~~-------~~~e~P~~~~Rw-------~~~~ge~YGrgp~~~~l~D~k~ 282 (532) T protein:vir:99 226 EAMVFRSYQEI----D----GEIVAGTEG-EY-------PLDSCPWIPVRL-------IKMPNEDYGRSFVEEYLGDLKS 282 (532) T ss_pred CCCeeEEEEee----c----Cceeccccc-cc-------ccccCCceeeee-------eecCCCccccchHHHHHHHHHH Confidence 221 2211111 1 111111110 00 011111111222 2334678999999999999999 Q ss_pred HHHHHHHHHH-HHHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 INDTHDQFIW-EIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEF 352 (508) Q Consensus 274 lD~~~s~~~~-e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i 352 (508) |+..--.... .....++...|+++.+. ++. ...+.....+++ .. .+..++..+...-+.....+.++.+.+.| T Consensus 283 L~~l~~~~l~~~~~a~~~~~lv~p~g~~-~~~--~~~~~~~g~~v~--g~-~~~i~~~~~~~~~~~~~~~~~i~~~~~rI 356 (532) T protein:vir:99 283 LENLYEAIVKMSMISSKVLFFVNPNGVT-QIR--RVAKANTGDFVA--GR-KQDVEVFQLEKYNDFQVAKATADDIEKRL 356 (532) T ss_pred HHHHHHHHHHHHHHHcCCCceecccccc-chh--hhccCCCcceec--CC-cccceeeecccccchhHHHHHHHHHHHHH Confidence 9976444444 33456666666543221 000 011111112221 11 11111211122223444556666665555 Q ss_pred HHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcc Q lcl|Aclame:pro 353 EVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPL 431 (508) Q Consensus 353 ~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 431 (508) ....=+.. +....+...|||||....+.......-.-.. -..-|..||.-++.+....++.+..-.. -+ T Consensus 357 ~~af~~~~--~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~--------~~ 426 (532) T protein:vir:99 357 SYAFMLNS--AVQRGGDRVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKE--------AV 426 (532) T ss_pred HHHHhhhh--cccCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChh--------hc Confidence 43331111 2223344579999999999988888764333 3445566777766666544444321110 11 Q ss_pred eEEEEeCCCc-cCCHHHHHHHHHHHHh--CCC-------CCHHHHH---HhcCCC-------CHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 432 DIECHFDDGV-FVNKDKQLEEDAKVLA--IGA-------LSKQTFL---QRNYGM-------TDEQAAEELAKIQSEAPT 491 (508) Q Consensus 432 ei~i~f~d~i-~~d~~~e~~~~~~~~~--~Gi-------~s~et~l---~~~~~~-------~deea~~e~~ri~~E~~~ 491 (508) ++.+.- ++ +..+.+.++..++... +.+ +....++ ....|+ ++||++++.++.+..+.. T Consensus 427 ~~~iv~--~is~Laraq~~~~l~~~~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~ 504 (532) T protein:vir:99 427 EPAIAT--GLEALGRGHDLNKLNVFIDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGM 504 (532) T ss_pred ccceee--cchHHHHHHHHHHHHHHHHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHH Confidence 122111 11 1122222222221110 111 1122222 233454 335555555443322211 Q ss_pred CC--CCCccc---------ccCCCCCCC Q lcl|Aclame:pro 492 DT--FEGGRS---------AILNGGDGE 508 (508) Q Consensus 492 ~~--~~~~~~---------~~~~~~~g~ 508 (508) .. .+.++. ..-++-|-+ T Consensus 505 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 505 VTAGQQMGAAGGQAAAAMMQQQAGMPTQ 532 (532) T ss_pred HHHHHHHHHHHHHhcchhHHhhcCCCCC Confidence 00 000000 000111111 No 169 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=97.33 E-value=9.2e-05 Score=42.70 Aligned_cols=367 Identities=9% Similarity=0.054 Sum_probs=150.0 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhc-CCCccccCccCCCccc-cccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYS-DKLQYIHYQASDGIKK-KRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~-g~~~~~~~~~~~~~~~-~~~~~~~n~~~ 78 (508) ||+|+++..- . .....+. . . ++. ..+..+.. ...+... .+......--. T Consensus 1 Mglf~~~~~~------~-------------~~~~~~~---~---~---~~~~~~~~~~~~-~~~~~~v~~~~al~~~~V~ 51 (384) T protein:vir:49 1 MPIFNITNLA------T-------------ESPPSNQ---D---S---FFDITDPEFLDA-LNGSEWVSAETALKNSDLF 51 (384) T ss_pred CccccccccC------c-------------ccccccc---h---h---hccccchhhccc-ccCCceechhhhhccHHHH Confidence 9998753210 0 0000000 0 0 000 00001110 0001000 00001111112 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYP 156 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~P 156 (508) ..++.+|+-+-+=|+.+. +... +..+.+--.......-...++...+..|.+++.+..|. |++ .+..++|+.+-+ T Consensus 52 ~~i~~Ia~~ia~l~~~~~--~~~~-~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v 128 (384) T protein:vir:49 52 SIISQLSNDLATAKITTS--RKQL-QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSF 128 (384) T ss_pred HHHHHHHHHHhhCceeee--cchh-hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEE Confidence 334555554443344443 2221 22222111111233445556777888899988777764 543 577788888766 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) +..+++.. ..|+ +. ..+ +. .|..+. ++. .+ T Consensus 129 ~~~~~~~~-----------------~~y~-~~---~~~-~~---------------~~~~~~---~~~-----~e----- 158 (384) T protein:vir:49 129 NRLDNQNG-----------------LYYN-IT---FDD-PR---------------IPPKQH---VPQ-----GD----- 158 (384) T ss_pred EEcCCCce-----------------EEEE-EE---ecC-cc---------------ccceeE---ecC-----cc----- Confidence 43222211 0111 00 000 00 000000 000 00 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCcc----C Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPT----F 309 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~----~ 309 (508) ..+++.+-++ +...|+|.+.-+...|+....+.....+-|+. +++..++ |..+.. ++.... . T Consensus 159 -----Vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~--~~~~~~~~~~~ 227 (384) T protein:vir:49 159 -----ILHFRLLSVD----GGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLL--DFKTKQSRSRQ 227 (384) T ss_pred -----EEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCh--HHHHHHHHHHH Confidence 2344432221 23468998888877776555444444555664 4555444 211110 000000 0 Q ss_pred CcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhHH Q lcl|Aclame:pro 310 DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTRS 388 (508) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~~ 388 (508) ....+....+-. +++..++.++......+..+..+...++|....|++|..++....+..|++.+...+...+ .++. T Consensus 228 ~~~~n~~~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~ 305 (384) T protein:vir:49 228 AMKQMQGGPLVL--DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLR 305 (384) T ss_pred hcccCCccceec--CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHH Confidence 000001111111 1222355555555556667778888899999999999999886655556555544333222 1222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~ 468 (508) -+...++.+|..-+. + +.......+..........+..+|++++.+++. T Consensus 306 pi~~~i~~~l~~~l~----~---------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~ 354 (384) T protein:vir:49 306 PFVSELSKKLSCEVD----A---------------------------DILPAVDPTGSNYIGLINSMVKTGTLAQNQGLY 354 (384) T ss_pred HHHHHHHHHhchhhh----h---------------------------hhhhhhhccchHHHHHHHHHhhcCcccHHHHHH Confidence 233333333221100 0 000001111122223344567788999888765 Q ss_pred hc--CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 469 RN--YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 469 ~~--~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .. .|+...|+.+. +. ..+..|+|.+ T Consensus 355 ~l~~~g~~~ne~r~~------~~---------~~p~~gGd~~ 381 (384) T protein:vir:49 355 VLQQAEILPKDLPEG------ET---------DSTLKGGETN 381 (384) T ss_pred HHhhCCCCChhHHHH------cC---------CCCCCCCCCC Confidence 42 34444444332 11 1112333333 No 170 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=97.24 E-value=0.00012 Score=42.08 Aligned_cols=433 Identities=12% Similarity=0.129 Sum_probs=181.4 Q ss_pred HHHhhhhh-----hhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhh Q lcl|Aclame:pro 14 GAAATGVT-----GSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVV 88 (508) Q Consensus 14 ~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll 88 (508) |-..|++. +.+++-.+ .+..++..-...|+.+|.---|.+-.. ++......++-=.-+...++.+|+-| T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~----~L~~~R~~~e~~w~e~a~~~lP~~~~~--~~~~~~~~~~~dstg~~a~~~LAa~l 74 (516) T protein:vir:96 1 MKQSIDLEYGGKRSKIPKLWE----KFSNKRSSFLDRAKHYSKLTLPYLMND--KGDNETSQNGWQGVGAQATNHLANKL 74 (516) T ss_pred CcchhhhhhhhhHHHHHHHHH----HHHHHhhHHHHHHHHHHHhhcccccCC--CCCccccCCcccchHHHHHHHHHHHH Confidence 11111111 22222221 223344455667777765444422111 12111222222234555566666555 Q ss_pred hcC--c-----ceEeeCCc------------HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCC Q lcl|Aclame:pro 89 FNE--K-----AEIHVKDN------------NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN 142 (508) Q Consensus 89 ~~e--~-----~~i~~~~~------------~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~ 142 (508) .+- | +++++++. ...+++ +...+..++|...+.++..+....|.+.+ |.|.. T Consensus 75 ~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~d~~ 152 (516) T protein:vir:96 75 AQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCML--YKPSK 152 (516) T ss_pred HhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeE--EecCC Confidence 433 1 23333221 112333 44466678899999999999999998764 45543 Q ss_pred eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEE---------E-----------eecCCcEEEEEEEEEEEeCCceEEEE Q lcl|Aclame:pro 143 HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQ---------R-----------TESNQTKYYTLLEFHQWQDNGSYQIT 201 (508) Q Consensus 143 ~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~---------~-----------~~~~~~~~yt~lE~h~~~~~g~~~I~ 201 (508) . .+..+|-.+++ +..| +|++..+++..+.. . .....-..|+++++ .+++.+ T Consensus 153 ~-~~~~~pl~~y~-v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~---~~~~~~--- 224 (516) T protein:vir:96 153 G-AISAIPMHHYV-VNRDTNGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKY---LGDGFW--- 224 (516) T ss_pred C-CEEEEEcCeEE-EeeCCCCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeee---eCCcee--- Confidence 2 25567777765 4445 45665544322100 0 00011234555543 233322 Q ss_pred EEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 NELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF 281 (508) Q Consensus 202 ~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~ 281 (508) .+|..-+...+|. ...| .+...|-..+.|. ...++.+|+|--..+.+-++.|+..--.. T Consensus 225 -~~~~~~d~~~~~~------es~~-------~~~e~P~~~~Rw~-------~~~ge~YGrgp~~~~L~D~k~L~~l~~~~ 283 (516) T protein:vir:96 225 -ELKQSADDIPVGK------VSKI-------KSEKLPFIPLTWK-------RSYGEDWGRPLAEDYSGDLFVIQFLSEAV 283 (516) T ss_pred -EEEEEeCceeecc------cccc-------ccccCCeeeeeee-------ecCCCCcccchHHHhhHHHHHHHHHHHHH Confidence 2222222211111 0001 0111121222222 23467899999999999999999655544 Q ss_pred HHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 282 IWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFIKEFEVQIGL 358 (508) Q Consensus 282 ~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l~~i~~~~g~ 358 (508) .... ...++...||++.+.. +. ...+.....+. .... ..+..++ +..+.......++.+.+.|....=+ T Consensus 284 l~~~~~a~~~~~lv~p~g~~~-~~--~l~~~~~g~i~--~g~~---~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~ 355 (516) T protein:vir:96 284 ARGAALMADIKYLIRPGAQTD-VD--HFVNSGTGEVV--TGVE---EDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMM 355 (516) T ss_pred HHHHHHhcCCccccCcccccc-hh--hhccCCCceee--cCCc---ccceeeecCcccchhHHHHHHHHHHHHHHHHHhh Confidence 4443 4566666775543211 10 01111111221 1111 1233333 3233455556666666666443312 Q ss_pred CchhccccccccchHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 359 STGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTM-VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 359 s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~-~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) +. +....+...|||||....+...+...-.-.. -..-|..|+.-++... . +. . +...+.++. T Consensus 356 ~~--l~~r~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~------~---p~----l--p~~~v~~~~ 418 (516) T protein:vir:96 356 ET--MTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEA------G---ES----F--TSDLVDPVI 418 (516) T ss_pred hh--hccCCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc------C---CC----C--cccccccee Confidence 21 2222334479999999998888877763322 2233445554433221 1 11 1 111122222 Q ss_pred CCCccC-CHHHHHH---HHHHHHh--CCC-------CCHHHHH---HhcCCC------CHHHHHHHHHHHHHhccCCCCC Q lcl|Aclame:pro 438 DDGVFV-NKDKQLE---EDAKVLA--IGA-------LSKQTFL---QRNYGM------TDEQAAEELAKIQSEAPTDTFE 495 (508) Q Consensus 438 ~d~i~~-d~~~e~~---~~~~~~~--~Gi-------~s~et~l---~~~~~~------~deea~~e~~ri~~E~~~~~~~ 495 (508) -.++.. -+...++ +..+.++ +++ +....++ ....|+ ++||++++.+..++.++..+-. T Consensus 419 vs~l~~l~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a 498 (516) T protein:vir:96 419 ITGIEALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLE 498 (516) T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHH Confidence 112211 1111111 1222211 111 1112222 222333 4466655554433332211111 Q ss_pred CcccccCCCCCCC Q lcl|Aclame:pro 496 GGRSAILNGGDGE 508 (508) Q Consensus 496 ~~~~~~~~~~~g~ 508 (508) .+......+.-|+ T Consensus 499 ~~~~~~~~~~~~~ 511 (516) T protein:vir:96 499 EGVAKAVPGVIQQ 511 (516) T ss_pred HHhhhhhhHHhhc Confidence 1111111111122 No 171 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=97.24 E-value=0.00012 Score=42.07 Aligned_cols=439 Identities=12% Similarity=0.149 Sum_probs=187.3 Q ss_pred HHhhhhhhhhHHhhcccc---ccCCHHHHHHHHHH-HHHhcCCCccccCccCCCcccc---ccccccchHHHHHHHHHHh Q lcl|Aclame:pro 15 AAATGVTGSLSKITDDPR---ISIDPDEYVRIQTD-LDYYSDKLQYIHYQASDGIKKK---RLKNTINMAKTAARRIASV 87 (508) Q Consensus 15 ~~~~~~~~~~~~~~~~~~---i~~~~~~~~~i~~~-~~~Y~g~~~~~~~~~~~~~~~~---~~~~~~n~~~~iv~~~A~l 87 (508) ++++| -.+|++..+.++ .+.+...-.+...- -.||....+ +...-......- |.....+-....++..++= T Consensus 1 m~~lf-g~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~-~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVne 78 (533) T protein:vir:10 1 MSQLF-GFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVD-FDGQVRNEYQLISRYREMVLQPECDSAVDDIVNE 78 (533) T ss_pred Ccccc-ccccccccccccCCCCCCCCcccccceeecccccceeee-cccccchHHHHHHHHHHHhhccchhhHHHHhhcc Confidence 33332 112222211111 11111000000000 012211111 110000000000 0011112223333443332 Q ss_pred hh-----cCcceEeeCC---cHH----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEEc Q lcl|Aclame:pro 88 VF-----NEKAEIHVKD---NNE----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWVR 150 (508) Q Consensus 88 l~-----~e~~~i~~~~---~~~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v~ 150 (508) +. .+|+.+.+++ ++. ..+..+.++.--+|.++..+.+.....-|..+||..+|. |-..+.+++ T Consensus 79 aiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr~lD 158 (533) T protein:vir:10 79 TICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLIELRYID 158 (533) T ss_pred eeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCCCccccceeeeecc Confidence 21 2356666543 111 233455666666899999999999999999999999984 445688899 Q ss_pred CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCC---ccccCccccccccccccC Q lcl|Aclame:pro 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDS---PDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 151 a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~---~~~lG~~v~l~~~~~~~~ 227 (508) |.++-|+..- .....++. .+..+..... +...++.+|.-.. +..-|.++|-+.+ T Consensus 159 Pr~i~~vr~i-------------~~~~~~~~-~~~~~~~~v~----~~~~eyf~Ynp~g~~~~~~~~vkI~~dAI----- 215 (533) T protein:vir:10 159 PRKIRKINET-------------EQKRPEQL-RGLPLNQQLS----PKSAEYFLYDPKGLKNSTTQGLKIAPDSI----- 215 (533) T ss_pred ccceeeeeee-------------eccCCCcc-ceeecchhhh----ccceeeeeeccccccccCCCceecchhhe----- Confidence 9998876321 00000110 0111000000 1111222332110 0011222221111 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch-------- Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP-------- 296 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~-------- 296 (508) .+.-+|+ .+.....=+|-+.+|.--...|=-.-+.+ .+--|.-..|||- .- T Consensus 216 ---~y~hSGl---------------~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KA 277 (533) T protein:vir:10 216 ---CYVHSGI---------------MDLNKNMTLSHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKA 277 (533) T ss_pred ---eeeeccc---------------eeCCCCceeccchHhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhH Confidence 0001221 01111112344444444333333222322 2223455566663 11 Q ss_pred -HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 297 -GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIG 357 (508) Q Consensus 297 -~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g 357 (508) .+++ ||..++.. .+++.+..+. -+++.+.-|+++..--.. .-+..++-+.+.++...+ T Consensus 278 eqYlr~iM~k~KNklVYDa~TGev--~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnL-gem~DV~YF~kKLY~aLn 354 (533) T protein:vir:10 278 EQYLREVMGRYRNKLVYDANTGEI--KDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNL-GELEDVKYFQKKLYKSLN 354 (533) T ss_pred HHHHHHHHHhccceEEEeccCcee--cccchhhhhHhhhcccccCCCCccceeeccccCCc-ChHHHHHHHHHHHHHHhC Confidence 1110 23333332 1222222221 122233346665543222 234667777888888888 Q ss_pred CCchhccccccc-cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEE Q lcl|Aclame:pro 358 LSTGTFSYSNDG-VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECH 436 (508) Q Consensus 358 ~s~~~~~~~~~~-~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~ 436 (508) .+.+-+..+++- ..-++||.-..-....-+..++..|..-|.++++.=|.|-. .+. .-.+..... .|.++ T Consensus 355 VP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKg---iit----~eeW~~i~~--~I~~~ 425 (533) T protein:vir:10 355 VPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLKG---VIS----IEEWDQMKE--HIQYD 425 (533) T ss_pred CCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCC----HHHHHHHhh--cceEe Confidence 888877665432 33456777666555666666777777777777665443311 111 111111122 24444 Q ss_pred eC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCccc-------- Q lcl|Aclame:pro 437 FD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRS-------- 499 (508) Q Consensus 437 f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~-------- 499 (508) |. ....+=.+.++-+.+. +. ..+ ..|.+++.++....||+|.+++-++|++|....-..++.. T Consensus 426 f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~ 505 (533) T protein:vir:10 426 YIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAA 505 (533) T ss_pred eeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcC Confidence 44 3333333333322211 11 112 4599998899999999999999999999864322111111 Q ss_pred -c-cCCCCCCC Q lcl|Aclame:pro 500 -A-ILNGGDGE 508 (508) Q Consensus 500 -~-~~~~~~g~ 508 (508) . ..+|..+| T Consensus 506 ~~~~~~~~~~~ 516 (533) T protein:vir:10 506 GDPDAGGAPAE 516 (533) T ss_pred CCCCcCCcccc Confidence 1 11222222 No 172 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=97.23 E-value=0.00012 Score=42.04 Aligned_cols=376 Identities=11% Similarity=0.100 Sum_probs=160.6 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) =|||.++|.||++.... ..... ...+ .++ +..++.|. .+.. ...+..+ T Consensus 14 ~g~~~~~~~~~~~~~~~-~~~~~--~~~~----~~~---------~~~~~~~~-------~v~~------~~al~~~~v~ 64 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLV-TPNQG--SQTG----PVS---------AHGHLGDS-------SIND------ERILQISTVW 64 (424) T ss_pred CchHHHHHhhhcccccc-ccccc--cccc----ccc---------cccccccc-------cccH------HHhhccHHHH Confidence 79999999999643211 10000 0000 000 00011111 0000 0011111 Q ss_pred ---HHHHHHHHHhhhcCcceEe-e-CCcH--H--HHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-C Q lcl|Aclame:pro 78 ---KTAARRIASVVFNEKAEIH-V-KDNN--E--ADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-N 142 (508) Q Consensus 78 ---~~iv~~~A~ll~~e~~~i~-~-~~~~--~--~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~ 142 (508) ..|++..|++ |+.+- . .+.. . .+--|..+|.. | ....-.+.++...+-.|.+++.+..+. | T Consensus 65 ~cv~~Ia~~iA~l----p~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G 140 (424) T protein:vir:18 65 RCVSLISTLTACL----PLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAG 140 (424) T ss_pred HHHHHHHHhhccC----ceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC Confidence 2344444433 33331 1 1100 0 01112233321 1 112233445667777898888777664 4 Q ss_pred e-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccc Q lcl|Aclame:pro 143 H-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLST 221 (508) Q Consensus 143 ~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~ 221 (508) + +.+..++|..+-+. .+++.+ .|+ + ..+|.. . .|.. T Consensus 141 ~~~~L~pl~~~~V~v~-~~~~~~------------------~y~---~---~~~g~~-~---~~~~-------------- 177 (424) T protein:vir:18 141 DVISLLPLQSANMDVK-LVGKKV------------------VYR---Y---QRDSEY-A---DFSQ-------------- 177 (424) T ss_pred cEEEEEEecCcceEEE-EcCCeE------------------EEE---E---EeCCeE-E---Eecc-------------- Confidence 4 35666777776542 333221 111 0 001110 0 0100 Q ss_pred cccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHH-HHHHh-ccceeee--chH Q lcl|Aclame:pro 222 LPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFI-WEIRL-GQKHIAV--QPG 297 (508) Q Consensus 222 ~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~-~e~~~-~~~~i~v--~~~ 297 (508) .+ ..++|.+-. +...|+|.+.-+...|+... ...++. +-|+. +++..++ |.. T Consensus 178 --------~e----------Iih~r~~~~-----dg~~G~spi~~~~~~i~~~~-a~~~~~~~~f~ng~~p~gil~~~~~ 233 (424) T protein:vir:18 178 --------KE----------IFHLKGFGF-----TGLVGLSPIAFACKSAGVAV-AMEDQQRDFFANGAKSPQILSTGEK 233 (424) T ss_pred --------cc----------EEEecCcCC-----CCcccccHHHHHHHHHHHHH-HHHHHHHHHHHccCCcceEEEeCCc Confidence 00 123332211 23468898887777765533 344443 34554 4565444 222 Q ss_pred HhcCCCCCCccCCcc-cceEeeecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccch Q lcl|Aclame:pro 298 MLRFDDEHKPTFDTE-QNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKT 372 (508) Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 372 (508) ++. ++....+... .+.+.+-+.+. +++..++.++......+..+..+...++|....|++|..+++...+..+ T Consensus 234 ~l~--~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~ 311 (424) T protein:vir:18 234 VLT--EQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSW 311 (424) T ss_pred CCC--HHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccc Confidence 211 1111001000 01111100000 1222355555554555677777788889999999999999876654432 Q ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 373 ATEVVSNNSMT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE 451 (508) Q Consensus 373 Atei~~~~~~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~ 451 (508) ++.+....... ..++.-....++.+|..- ++.... .....+.|+++.-+..|..+.++. T Consensus 312 ~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~------------L~~~~~--------~~~~~~~fd~~~llr~d~~~r~~~ 371 (424) T protein:vir:18 312 GSGIEQQNLGFLQYTLQPYISRWENSIQRW------------LIPAKD--------VGRIHAEHNLDGLLRGDSASRAAF 371 (424) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cCCccc--------cCCeEEEEechhhhccCHHHHHHH Confidence 22222222111 223333333333333321 111100 012457777777778899999999 Q ss_pred HHHHHhCCCCCHHHHHHhcCCCCH-HHHHHHH-----HHHHHhccCCCCCCcccccCCCC Q lcl|Aclame:pro 452 DAKVLAIGALSKQTFLQRNYGMTD-EQAAEEL-----AKIQSEAPTDTFEGGRSAILNGG 505 (508) Q Consensus 452 ~~~~~~~Gi~s~et~l~~~~~~~d-eea~~e~-----~ri~~E~~~~~~~~~~~~~~~~~ 505 (508) ..+++.+|+|+.-+++... |+++ +..++-+ ..+. +.....++. .+|+ T Consensus 372 ~~~~~~~G~~T~NE~R~~~-gl~pi~gGD~~~~~~n~~~l~--~~~~~~~p~----~~ga 424 (424) T protein:vir:18 372 MKAMGEAGLRTINEMRRTD-NLPPLPGGDVAMRQSQYVPIT--DLGTNKEPR----NNGA 424 (424) T ss_pred HHHHHhCCCcCHHHHHHHh-CCCCCCCcCeeeeccCccchH--hhhccCCCc----cCCC Confidence 9999999999999988753 3322 1111100 0000 000011111 1111 No 173 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=97.18 E-value=0.00014 Score=41.69 Aligned_cols=377 Identities=12% Similarity=0.070 Sum_probs=154.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+++++..++.... .. ..+..++.+.... ....+ +.. .-......... T Consensus 1 Mg~f~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~v~~~ 51 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIR-----------------AD-------TGYVGLFMSGEDV-SFLVP-GYV---RLSDNPEVRMA 51 (406) T ss_pred Ccchhhhcccccccccc-----------------cc-------chhhhhhccCccc-Ccccc-CHH---HHhhcHHHHHH Confidence 99998765543221110 00 0111122211110 00000 000 00111233445 Q ss_pred HHHHHHhhhcCcceEee-CCc--HHHHHHHHHHH-H----hhhHHHHHHHHHHHHhhcCCE--EEEEEEeC-Cee-EEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHV-KDN--NEADKFLNDVL-E----DNDFKNKFEEALEKGVALGGF--AMRPYIDG-NHI-KIAW 148 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~-~~~--~~~~~~l~~~l-~----~n~f~~~~~~~~~~a~~~G~~--~~~~~~d~-~~~-~i~~ 148 (508) ++.+|+-+-.=|..+-- .++ ......+...| . .......++.++...+..|.+ ++.+-.+. |.+ .+-. T Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~ 131 (406) T protein:vir:95 52 VHKIADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVP 131 (406) T ss_pred HHHHHHhhccCceEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEE Confidence 55555555444444411 111 01111111112 1 112233445556666666644 33444443 333 4555 Q ss_pred EcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCC Q lcl|Aclame:pro 149 VRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKEL 228 (508) Q Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l 228 (508) ++|+.+-++. +.+ + |.+++ . |..++..+ T Consensus 132 i~~~~v~~~~-~~~------------------~----------------~~~~~---~-------~~~~~~~e------- 159 (406) T protein:vir:95 132 LTPSKVNFLD-TPD------------------G----------------YQVLY---G-------GQTFNYDE------- 159 (406) T ss_pred EcCceeEEEE-cCC------------------e----------------EEEEe---c-------cEEEchhH------- Confidence 6666655431 111 0 11110 0 00111000 Q ss_pred CcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCC Q lcl|Aclame:pro 229 APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEH 305 (508) Q Consensus 229 ~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~ 305 (508) ..+++.+. .....-.|+|.+.-+...++....+......-|+.| .+.-++ +..+ +++. T Consensus 160 -------------vih~~~~~---~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l---~~e~ 220 (406) T protein:vir:95 160 -------------VLHFIYNP---DPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAAT---AELS 220 (406) T ss_pred -------------EEEeeccC---CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC---CHHH Confidence 12333211 111123589988888888777766544445555544 444333 2111 1111 Q ss_pred CccCCcc-cceEeeec------CCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 306 KPTFDTE-QNVYVGVL------SDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 306 ~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) ...+... ...|.+.. .-..++..++.+++ .....+..+..+...+.|....|++|..+|..... + T Consensus 221 ~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~-----~-- 293 (406) T protein:vir:95 221 SEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEFN-----R-- 293 (406) T ss_pred HHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCch-----H-- Confidence 1111000 01111110 00011111222221 22334566777777889999999999888643211 1 Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLA 457 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~ 457 (508) ... ...++.+|..++..|-...+.. ++. ...+.+.+++++-+..|..+.++...+++. T Consensus 294 ~~~----------~~~~~~~l~P~~~~ie~~l~~~-l~~-----------~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~ 351 (406) T protein:vir:95 294 DEY----------NNFINSTILPIAKGIEQELTRK-LLI-----------SPDLYFKFNPRSLYAYDLKELAEVGSNMYV 351 (406) T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHh-cCC-----------CCCcEEEeechhhhcCCHHHHHHHHHHHHh Confidence 111 1234555555555544332211 111 123457788888777899999999999999 Q ss_pred CCCCCHHHHHHhcCCCCHH-HHHHHHHHHHHhccCCC--CCCcccccCCC-CCCC Q lcl|Aclame:pro 458 IGALSKQTFLQRNYGMTDE-QAAEELAKIQSEAPTDT--FEGGRSAILNG-GDGE 508 (508) Q Consensus 458 ~Gi~s~et~l~~~~~~~de-ea~~e~~ri~~E~~~~~--~~~~~~~~~~~-~~g~ 508 (508) +|+|+..+++... |+++- ..++-+-.. .-.+... .....-+++++ .+|+ T Consensus 352 ~G~~t~NE~R~~~-gl~p~~~gd~~~~~~-n~~~~~~~~~~~~~k~g~~~~~~~~ 404 (406) T protein:vir:95 352 RGIMEGNEVRDWL-GLSPKEGLSELVILE-NYIPLDKIGDQSKLKGGDNSGADGQ 404 (406) T ss_pred CCCcCHHHHHHHh-CCCCCCCcceeeecc-CccchhhcccccccCCCCCCCCCCC Confidence 9999999988753 44321 111111000 0000000 00001111111 2222 No 174 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=97.18 E-value=0.00014 Score=41.68 Aligned_cols=405 Identities=15% Similarity=0.126 Sum_probs=160.2 Q ss_pred CCh-HHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHH-H--HhcCCCc-cccCccCCC----ccccccc Q lcl|Aclame:pro 1 MGL-IQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDL-D--YYSDKLQ-YIHYQASDG----IKKKRLK 71 (508) Q Consensus 1 m~~-~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~-~--~Y~g~~~-~~~~~~~~~----~~~~~~~ 71 (508) -++ |=++.+.+||. +|.++=.. +...|. + -+.+... .+. ...+. ....... T Consensus 60 ~~~~~~~~~~~~kk~-----------------~i~~pfkk--k~~~~~~d~f~~s~es~s~vt-sls~pdaf~~vnVs~~ 119 (945) T protein:vir:10 60 YSIIIFRKNQVLKKE-----------------KIIVPYNH--QEPPFKFNLFEYSPESLMYLP-SISDPDAFFLINLFRK 119 (945) T ss_pred eeeeeehhhhHHHhh-----------------cccccccc--cccchhhhhhhccCccceecc-cccCccceeeehhhhh Confidence 111 11122332221 11111000 000000 0 1222111 000 00000 0000001 Q ss_pred cccc--hHHHHHHHHHHhhhcCcceEe--eCCcH--------HHHHHHHHHHHh-------hhHHHHH-HHHHHHHhhcC Q lcl|Aclame:pro 72 NTIN--MAKTAARRIASVVFNEKAEIH--VKDNN--------EADKFLNDVLED-------NDFKNKF-EEALEKGVALG 131 (508) Q Consensus 72 ~~~n--~~~~iv~~~A~ll~~e~~~i~--~~~~~--------~~~~~l~~~l~~-------n~f~~~~-~~~~~~a~~~G 131 (508) ..++ .-...++.+|+-+-+=|+.+- ..+.. .....+..++.. .+|+..+ +.++.+.+..| T Consensus 120 ~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~G 199 (945) T protein:vir:10 120 YRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTID 199 (945) T ss_pred hhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcC Confidence 1111 122334444444444355441 11110 001123334432 1344433 44567788889 Q ss_pred CEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCC Q lcl|Aclame:pro 132 GFAMRPYID-GNHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDS 209 (508) Q Consensus 132 ~~~~~~~~d-~~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~ 209 (508) .+++.+..+ +|++ .+..++|.++-|...+++.. .|.. ....+|...+ .|.. T Consensus 200 NAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~------------------~y~Y----v~~idG~~~~---~v~a-- 252 (945) T protein:vir:10 200 RGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI------------------VVGY----VQEVDGAIVA---HFDK-- 252 (945) T ss_pred CeEEEEEECCCCcEEEEEEECCcceEEEEcCCCcE------------------EEEE----EEecCCceEE---EecC-- Confidence 998877775 4554 57778888887764443332 1100 0000111110 0000 Q ss_pred ccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hc Q lcl|Aclame:pro 210 PDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LG 288 (508) Q Consensus 210 ~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~ 288 (508) .+ . .-+++.+-++ ....++|+|.+.-+...|.....+-....+-|. .| T Consensus 253 --------------------~D-------v--Ilhirn~s~D--G~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNG 301 (945) T protein:vir:10 253 --------------------RD-------V--VLFRQNLTPD--VYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) T ss_pred --------------------Cc-------e--EEEeccCCCC--cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 00 0 0112222121 112346888877766666554333333334453 33 Q ss_pred -cceeee--chHHhcCCCCCCccCCcc-----c----ceEeeecCC----CCCCCcceEeeccCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 -QKHIAV--QPGMLRFDDEHKPTFDTE-----Q----NVYVGVLSD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEF 352 (508) Q Consensus 289 -~~~i~v--~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i 352 (508) +|+-++ +.... .+......+.+. + ..+.+.+.+ -+++..++.++......+..+..+...++| T Consensus 302 a~PsGILsvkg~~~-~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeI 380 (945) T protein:vir:10 302 SIPEGILAIEPPSY-KEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) T ss_pred CccceEEEecCccc-cccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 444232 21111 000011111100 0 011110000 012223555555555666777788888899 Q ss_pred HHHhCCCchhccccccccc-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcc Q lcl|Aclame:pro 353 EVQIGLSTGTFSYSNDGVK-TATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPL 431 (508) Q Consensus 353 ~~~~g~s~~~~~~~~~~~~-TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 431 (508) ....|++|..+|+.++... ++.+....+ ...++.-+...++..|...+ .. ..... T Consensus 381 ArAFGVPP~lLG~~e~st~SNiEqq~~~F--v~~tL~Pil~~IEqeLNrkL------------l~----------~~eg~ 436 (945) T protein:vir:10 381 CAVYQVSPQDVGILEGSNKATAEVMASLT--KAKGLEPLMATISKGFDEVV------------SE----------FRNEK 436 (945) T ss_pred HHHhCCCHHHcccCCCCCcchHHHHHHHH--HHHHHHHHHHHHHHHHHHhc------------cc----------cccCc Confidence 9999999999987654332 222211111 11233334444444443321 00 01123 Q ss_pred eEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCH-HHH----H-----HHHHHHHH-hcc--CCCCCC Q lcl|Aclame:pro 432 DIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTD-EQA----A-----EELAKIQS-EAP--TDTFEG 496 (508) Q Consensus 432 ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~d-eea----~-----~e~~ri~~-E~~--~~~~~~ 496 (508) .+.+.|+.....|.++.++...+++..|+|+.-+++... |-++. ++. . .+....+. .++ ...... T Consensus 437 ~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~ 516 (945) T protein:vir:10 437 DIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMA 516 (945) T ss_pred eeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCC Confidence 577888888888989999999999999999999988763 22211 000 0 00000000 000 000111 Q ss_pred cccccCCCCCCC Q lcl|Aclame:pro 497 GRSAILNGGDGE 508 (508) Q Consensus 497 ~~~~~~~~~~g~ 508 (508) ++....+|++.| T Consensus 517 dqp~~kGGe~dE 528 (945) T protein:vir:10 517 DQPSQQGGGVDE 528 (945) T ss_pred CCCCCCCCCCCC Confidence 111112211111 No 175 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=97.12 E-value=0.00016 Score=41.33 Aligned_cols=385 Identities=12% Similarity=0.132 Sum_probs=159.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||.+.+. +. +..+..- ...|-....|-.. .....+.... . .+++ ... .. T Consensus 1 Mg~f~~~~~---r~------------------~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~-a-l~~~-~v~-~c 51 (416) T protein:vir:45 1 MGIFYKNEK---RD------------------LQYNEDD---LQMMVQTLPGFQG-TKLRQYKDIE-A-IRHS-DIF-TA 51 (416) T ss_pred CCccccccc---cc------------------ccCCCcc---hhHHHHHhccccc-cCccccchhh-h-hcch-HHH-HH Confidence 999864221 00 0000000 0011111111000 0000000000 0 0000 011 12 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--hh---HHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCe Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--ND---FKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQ 153 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n~---f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~ 153 (508) |+.+|+-+-.=|+.+.-++....+..+..+|.. |. ...-.+.++...+..|.+++.+..+. |++ .+..++|++ T Consensus 52 v~~Ia~~iA~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~ 131 (416) T protein:vir:45 52 VMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSE 131 (416) T ss_pred HHHHHHhhccCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 333333333335555432222222223333321 21 12234445666778899888777764 554 577788888 Q ss_pred EEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 154 FYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) +-++..+++++ +|+. . .....+ +... ..|.. . + T Consensus 132 v~v~~~~~g~~------------------~~~~-~--~~~~~~-~~~~-~~~~~------------~----------e-- 164 (416) T protein:vir:45 132 IELKSDARGRL------------------YYFH-Q--RIDSNG-NNIE-RNVKF------------E----------D-- 164 (416) T ss_pred eEEEECCCccE------------------EEEE-E--EecCCC-ceeE-EEEcc------------c----------c-- Confidence 87653333332 1110 0 000000 0000 00100 0 0 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCC Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFD 310 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~ 310 (508) ..+++.+ .. +...|+|.+.-+...|+.....-....+-|+. +.+..++ |..+. +++....+. T Consensus 165 --------vihir~~---~~--d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~--~~~~~~~~~ 229 (416) T protein:vir:45 165 --------MLDIKFY---SL--DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD--NKKARDRAR 229 (416) T ss_pred --------EEEeccC---CC--CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCC--CHHHHHHHH Confidence 1233321 11 23468998888887776544333333344554 4455444 22111 111110000 Q ss_pred c-ccceEee-------ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 311 T-EQNVYVG-------VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 311 ~-~~~~~~~-------~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) . -...|.+ +-. +++..++.++.+....++.+..+...++|....|++|..++.+.++. +.++....+ T Consensus 230 ~~~~~~~~g~~nag~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-~~~~~~~~~-- 304 (416) T protein:vir:45 230 EEFHKSFSGTKQAGKVVVL--DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDY-- 304 (416) T ss_pred HHHHHHhcCccccCceeec--CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHH-- Confidence 0 0001111 111 12223555555555556777777778899999999999988654432 122222211 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) ..++.-+...++..|... ++.. ...+++.|+++.-...|.++.++....++..|+|+ T Consensus 305 -~~~l~P~~~~ie~~ln~~------------l~~~----------~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T 361 (416) T protein:vir:45 305 -LSTLKPYITCVCAELNFK------------FNDE----------YVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMN 361 (416) T ss_pred -HHHHHHHHHHHHHHHhhh------------cccc----------ccCceEEEechhhhccCHHHHHHHHHHHHhCCCcC Confidence 112222223333322221 1110 12346777777767779999999999999999999 Q ss_pred HHHHHHhc--CCCCHHHHHH-H-------HHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRN--YGMTDEQAAE-E-------LAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~--~~~~deea~~-e-------~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-+++... |-+++-+... . ++-+.+.+. ....... -...+|| T Consensus 362 ~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~--~~~~~~~--~~~kgGe 413 (416) T protein:vir:45 362 IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQM--NKSRATD--KKLKGGE 413 (416) T ss_pred HHHHHHHhCCCCCCCCCcceEeecccccccccccccCc--ccccccc--cccCCCC Confidence 99988763 2222211100 0 011101111 1111111 1122333 No 176 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=97.12 E-value=0.00016 Score=41.33 Aligned_cols=385 Identities=12% Similarity=0.132 Sum_probs=159.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||.+.+. +. +..+..- ...|-....|-.. .....+.... . .+++ ... .. T Consensus 1 Mg~f~~~~~---r~------------------~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~-a-l~~~-~v~-~c 51 (416) T protein:vir:81 1 MGIFYKNEK---RD------------------LQYNEDD---LQMMVQTLPGFQG-TKLRQYKDIE-A-IRHS-DIF-TA 51 (416) T ss_pred CCccccccc---cc------------------ccCCCcc---hhHHHHHhccccc-cCccccchhh-h-hcch-HHH-HH Confidence 999864221 00 0000000 0011111111000 0000000000 0 0000 011 12 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--hh---HHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCe Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--ND---FKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQ 153 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n~---f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~ 153 (508) |+.+|+-+-.=|+.+.-++....+..+..+|.. |. ...-.+.++...+..|.+++.+..+. |++ .+..++|++ T Consensus 52 v~~Ia~~iA~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~ 131 (416) T protein:vir:81 52 VMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSE 131 (416) T ss_pred HHHHHHhhccCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 333333333335555432222222223333321 21 12234445666778899888777764 554 577788888 Q ss_pred EEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 154 FYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) +-++..+++++ +|+. . .....+ +... ..|.. . + T Consensus 132 v~v~~~~~g~~------------------~~~~-~--~~~~~~-~~~~-~~~~~------------~----------e-- 164 (416) T protein:vir:81 132 IELKSDARGRL------------------YYFH-Q--RIDSNG-NNIE-RNVKF------------E----------D-- 164 (416) T ss_pred eEEEECCCccE------------------EEEE-E--EecCCC-ceeE-EEEcc------------c----------c-- Confidence 87653333332 1110 0 000000 0000 00100 0 0 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCC Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFD 310 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~ 310 (508) ..+++.+ .. +...|+|.+.-+...|+.....-....+-|+. +.+..++ |..+. +++....+. T Consensus 165 --------vihir~~---~~--d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~--~~~~~~~~~ 229 (416) T protein:vir:81 165 --------MLDIKFY---SL--DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD--NKKARDRAR 229 (416) T ss_pred --------EEEeccC---CC--CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCC--CHHHHHHHH Confidence 1233321 11 23468998888887776544333333344554 4455444 22111 111110000 Q ss_pred c-ccceEee-------ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 311 T-EQNVYVG-------VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 311 ~-~~~~~~~-------~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) . -...|.+ +-. +++..++.++.+....++.+..+...++|....|++|..++.+.++. +.++....+ T Consensus 230 ~~~~~~~~g~~nag~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-~~~~~~~~~-- 304 (416) T protein:vir:81 230 EEFHKSFSGTKQAGKVVVL--DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDY-- 304 (416) T ss_pred HHHHHHhcCccccCceeec--CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHH-- Confidence 0 0001111 111 12223555555555556777777778899999999999988654432 122222211 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) ..++.-+...++..|... ++.. ...+++.|+++.-...|.++.++....++..|+|+ T Consensus 305 -~~~l~P~~~~ie~~ln~~------------l~~~----------~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T 361 (416) T protein:vir:81 305 -LSTLKPYITCVCAELNFK------------FNDE----------YVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMN 361 (416) T ss_pred -HHHHHHHHHHHHHHHhhh------------cccc----------ccCceEEEechhhhccCHHHHHHHHHHHHhCCCcC Confidence 112222223333322221 1110 12346777777767779999999999999999999 Q ss_pred HHHHHHhc--CCCCHHHHHH-H-------HHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRN--YGMTDEQAAE-E-------LAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~--~~~~deea~~-e-------~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-+++... |-+++-+... . ++-+.+.+. ....... -...+|| T Consensus 362 ~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~--~~~~~~~--~~~kgGe 413 (416) T protein:vir:81 362 IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQM--NKSRATD--KKLKGGE 413 (416) T ss_pred HHHHHHHhCCCCCCCCCcceEeecccccccccccccCc--ccccccc--cccCCCC Confidence 99988763 2222211100 0 011101111 1111111 1122333 No 177 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=97.11 E-value=0.00017 Score=41.31 Aligned_cols=375 Identities=10% Similarity=0.056 Sum_probs=153.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|+ +|++.-... ...+..... ...+ -..+..++.+... ..+.. +.-+...--... T Consensus 3 m~~~~----~~~~~~~~~-~~~~~~~~~----~~~~------~~~~~~~~~~~~g----~~v~~----~~al~~~~v~~~ 59 (392) T protein:vir:74 3 LPILN----FINQTNDPP-EAGSVQSYF----PDGN------DAQIMESLLGDNN----EWVSA----RAALRNSDLFSI 59 (392) T ss_pred chhhh----hhhcccCcc-ccccccccc----ccCc------hhhhhhhccCCCC----cccch----hhhhcchHHHHH Confidence 77765 444321110 000000000 0000 0111122222211 01110 000111112233 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQ 158 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~ 158 (508) |+.+|+-+-.=|+.+. ... .+..+..-.....-..-.+.++...+..|.+++.+..+. |++ .+..++|+++-+.. T Consensus 60 v~~ia~~ia~lp~~~~--~~~-~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~ 136 (392) T protein:vir:74 60 ILQLSSDLAIVKINAE--KKK-NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHHhhccCceeec--cch-hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 4444444433243333 222 122222211111122334445667888899887777664 554 67778888776542 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) ...+.. .+.++.. .+ +..... ..|.. .+ T Consensus 137 ~~~~~~------------------~~y~~~~---~~-~~~~~~-~~~~~----------------------~e------- 164 (392) T protein:vir:74 137 FEYENG------------------MYYNITF---DD-PKIEPI-LQAPQ----------------------SD------- 164 (392) T ss_pred cCCCce------------------EEEEEEe---cC-Ccccee-EEEcC----------------------cc------- Confidence 222211 1111100 00 000000 00000 00 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCcc----CCc Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPT----FDT 311 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~----~~~ 311 (508) ..+++.+-.+ +...|+|-+.-+...|+....+-....+-|+.+ .+.-++ |......+ +.... +.. T Consensus 165 ---vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~-~~~~~~~~~~~~ 236 (392) T protein:vir:74 165 ---LIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-KDKASRSRSFMK 236 (392) T ss_pred ---EEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH-HHHHHHHHHHhc Confidence 2334332221 234699998888888855554433334455654 444333 22211100 00000 100 Q ss_pred ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 312 EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~ 391 (508) ..+....+-. +++..++.++.+....+..+..+...++|....|++|..+|+......++++..+- T Consensus 237 ~~n~g~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~~~~------------ 302 (392) T protein:vir:74 237 RSRSGGPVVL--DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM------------ 302 (392) T ss_pred cccCCCeeec--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHH------------ Confidence 0000000101 12334666665555667778888888899999999999998754433323222221 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh-- Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR-- 469 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~-- 469 (508) ++.+|..+++.|..-.+.. +.. .+.+++..-+-.|..+.+..+..++.+|+++..+++.. T Consensus 303 --~~~~l~p~~~~ie~~l~~~-l~~---------------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~ 364 (392) T protein:vir:74 303 --YASALNRYLRPAISELEYK-LSD---------------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQ 364 (392) T ss_pred --HHHHHHHHHHHHHHHHHHh-ccc---------------hhcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHH Confidence 2222333332221111100 000 11222222234566777888888999999999887653 Q ss_pred cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 ~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-|+...|+.+ .|.- .+..|+|+. T Consensus 365 ~~g~~pne~r~------~enl---------~~~~~Gd~~ 388 (392) T protein:vir:74 365 EAGYIPKDLPA------PENT---------NKKTTGQSN 388 (392) T ss_pred hCCCCccccch------hcCC---------CCCCCCCCC Confidence 34554443321 1111 112222333 No 178 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=97.11 E-value=0.00017 Score=41.30 Aligned_cols=388 Identities=12% Similarity=0.087 Sum_probs=161.7 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) |+...-+++-. ...+. ++ ..|..++.+..+......+.... -+.+.---..++.+|+-+-.=|+.+-- T Consensus 1 ~~f~~~f~r~~-~~~~~-~~------~~~~~~~~~~~~~~~g~~v~~~~----~l~~~~v~~~i~~Ia~~iA~~p~~~~~ 68 (413) T protein:vir:48 1 MFFSGLFQRKS-DAPVT-TP------AELAEAIGLSYDTYTGKRISSQR----AMRLTAVYSCVRVLAESVGMLPCSLYK 68 (413) T ss_pred CccchhhccCc-cCCcc-ch------HHHHHhhhcCcccccCceechhh----hhccHHHHHHHHHHHHhhhhCceEEEE Confidence 11111111111 01111 11 12223333322211111111110 011111223344444444333444321 Q ss_pred CCcH---H-HHHHHHHHHHh-----hhHHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEEEcCCeEEEEEEcCCCeEEE Q lcl|Aclame:pro 98 KDNN---E-ADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDGNHI-KIAWVRADQFYPLQSNTNDISEA 167 (508) Q Consensus 98 ~~~~---~-~~~~l~~~l~~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~v~a~~~~Pi~~d~~~~~~~ 167 (508) .+++ . .+.-+..+|.. .....-.+.++...+..|.+++.+..+.|++ .+-.++|+.+-+. .+.+.. T Consensus 69 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g~~~~L~~l~~~~v~~~-~~~~~~--- 144 (413) T protein:vir:48 69 ISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPK-LNSQWQ--- 144 (413) T ss_pred ecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCCcEEEEEEEcCceEEEE-EcCCce--- Confidence 1111 0 01112333321 1223345556777788899988877776764 4566777776654 222110 Q ss_pred EEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecC Q lcl|Aclame:pro 168 AIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKT 247 (508) Q Consensus 168 ~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~ 247 (508) ..|. +. ..+ |... .|.. .+ +.+++. T Consensus 145 --------------~~y~-~~---~~~-g~~~----~~~~----------------------~e----------vih~~~ 169 (413) T protein:vir:48 145 --------------PVYQ-VT---FPD-GSVD----VLTQ----------------------DE----------IWHVRT 169 (413) T ss_pred --------------EEEE-EE---ecC-ceEE----EEcc----------------------cc----------EEEecC Confidence 0110 00 011 1100 0000 00 223432 Q ss_pred CccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeech-HHhcCCCCCCccCCcc-cceEeeec-CC- Q lcl|Aclame:pro 248 PGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQP-GMLRFDDEHKPTFDTE-QNVYVGVL-SD- 322 (508) Q Consensus 248 ~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~- 322 (508) +-. +...|+|.+.-+...|+.....-....+-|+. +.++.++.- ..+ +++....+... ...|.+.. .+ T Consensus 170 ~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~--~~e~~~~~~~~~~~~~~g~~n~g~ 242 (413) T protein:vir:48 170 LTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKL--TPDAYERLKKDFEERHTGLGNAHR 242 (413) T ss_pred cCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC--CHHHHHHHHHHHHHHhcCccccCc Confidence 211 23469999888888887666554444445664 456555421 000 11111111000 11111110 00 Q ss_pred ---CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHH Q lcl|Aclame:pro 323 ---DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAI 398 (508) Q Consensus 323 ---~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al 398 (508) -+++..++.++......+..+..+...+.|....|++|..++...++. .++++.... .++.+| T Consensus 243 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~-------------f~~~~i 309 (413) T protein:vir:48 243 PMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLG-------------FINYSL 309 (413) T ss_pred ceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHH-------------HHHHHH Confidence 012223555555444556677777888899999999999998754432 223222211 223334 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH-HH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD-EQ 477 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d-ee 477 (508) ..++..+....+. .++.... ...+.+.|+++.-+..|.++.++...+++.+|+|+.-+++... |+++ +. T Consensus 310 ~P~~~~ie~~l~~-~L~~~~~--------~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~~p~~g 379 (413) T protein:vir:48 310 VPYLTRIEQRINT-GLVRESK--------QGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLE-DMNPRPG 379 (413) T ss_pred HHHHHHHHHHHHh-hccCccc--------cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCC Confidence 4443333222111 1111100 0124577777776677999999999999999999999988642 4432 11 Q ss_pred HHHHHHHHHHhccCCCCCCccc-ccCCCCCCC Q lcl|Aclame:pro 478 AAEELAKIQSEAPTDTFEGGRS-AILNGGDGE 508 (508) Q Consensus 478 a~~e~~ri~~E~~~~~~~~~~~-~~~~~~~g~ 508 (508) .++-+.. ..........+.. ...++++.| T Consensus 380 gD~~~~~--~n~~~~~~~~~~~~~~~~~~~~~ 409 (413) T protein:vir:48 380 GDVYLTP--MNMTTSPSAGDDNGKKKESGDAD 409 (413) T ss_pred cceeecc--ccccccccccccCCCCCCCCCcc Confidence 1111111 0101000011100 111111222 No 179 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=97.06 E-value=0.00019 Score=41.02 Aligned_cols=376 Identities=11% Similarity=0.126 Sum_probs=149.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|+++++++.+... .+.. +.. ++.+. .+.....+... .-+.+.-.... T Consensus 1 MGl~~~~~~~~~~~~~--------------~~~~--------~~~---~~~~~-~~~~~~~vt~~----~al~~~~v~~~ 50 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAE--------------KRGY--------LDN---VLGKS-IRYSGVYVTDS----NILQSSDVYEL 50 (394) T ss_pred CchhhhhhhhccCCCC--------------chhh--------hhh---hhhcc-cccCccccChh----hhhccHHHHHH Confidence 9999987765421110 0000 000 11111 11110000000 00111222333 Q ss_pred HHHHHHhhhcCcceEeeCCcHH-HHHHHHHHHHh-h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNE-ADKFLNDVLED-N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFY 155 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~-~~~~l~~~l~~-n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~ 155 (508) ++.+|+-+-.=|+.+.-.+.++ .+..+..++.. | ....-...++...+..|.+++. +++..+. .+..+. T Consensus 51 i~~Ia~~iA~lp~~v~~~~g~~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~--i~~~~~~----~~~~~~ 124 (394) T protein:vir:62 51 LQDISNQMVLADIVVEDEFGNEIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPI--LNGAQIH----LASNVF 124 (394) T ss_pred HHHHHHhhcccceEEEcCCCcccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEE--Eecceee----ccccce Confidence 3444443333344443222111 11122223322 1 1122333455666667777654 3322111 112222 Q ss_pred EEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeec Q lcl|Aclame:pro 156 PLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTIS 235 (508) Q Consensus 156 Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~ 235 (508) |. .+ ..+ .| + +..+ |..++-.+ T Consensus 125 ~~-~~------------------~~~-~~----~--~~~~------------------~~~~~~~e-------------- 146 (394) T protein:vir:62 125 TE-LD------------------DNL-VE----H--FNIG------------------GHEIPPCM-------------- 146 (394) T ss_pred EE-EC------------------Cce-EE----E--EeeC------------------CEEechhh-------------- Confidence 21 10 000 00 0 0000 11111000 Q ss_pred CCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeec-hHHhcCCCCCCccCCc-c Q lcl|Aclame:pro 236 GLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQ-PGMLRFDDEHKPTFDT-E 312 (508) Q Consensus 236 g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~-~~~~~~~~~~~~~~~~-~ 312 (508) +.+++.+-.+ ...|+|.+.-+...|......-.....-|+. +.+.-++- +..+..+.+....+.. - T Consensus 147 ------iih~r~~~~d-----~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~ 215 (394) T protein:vir:62 147 ------IRHVKNIGAD-----HLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAI 215 (394) T ss_pred ------eEEecCcCCC-----CccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHH Confidence 2344432121 2358999888888777666555545555665 45554441 1111111110001100 0 Q ss_pred cceEeeecC-CC----CCCCcce--EeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHh Q lcl|Aclame:pro 313 QNVYVGVLS-DD----NNGLGVK--DMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) Q Consensus 313 ~~~~~~~~~-~~----~~~~~i~--~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~ 385 (508) .+.|.+... +. ..+.+++ .++......+..+..+...++|....|++|..++.... .++++.. T Consensus 216 ~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--sn~e~~~-------- 285 (394) T protein:vir:62 216 LDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELIK--EDIEKAM-------- 285 (394) T ss_pred HHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC--cCHHHHH-------- Confidence 011211100 00 1122344 34444445567777777788999999999999874322 1221111 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et 465 (508) ...++.+|..++..+....+.. ++.. .....+.|.|+..-..+.++.++...+++.+|+|+.-+ T Consensus 286 -----~~~~~~~l~P~~~~ie~~l~~k-ll~~----------~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE 349 (394) T protein:vir:62 286 -----MYIHNKAVRPIMKNFEDHLSLL-FYAQ----------NSGKRIKFKINILDFVTYSNKTNIGYNLVRTAITSPDN 349 (394) T ss_pred -----HHHHHHHHHHHHHHHHHHHhhh-hcCc----------cccCceEEEechhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 1123333444444332222110 1110 01124678888777788788888888899999999999 Q ss_pred HHHh--cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 466 FLQR--NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 466 ~l~~--~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ++.. ++-+++++.........- .+............+|.+.| T Consensus 350 ~R~~~gl~p~~~~~gd~~~~~~n~-~~~~~~~~~~~~~kgge~~e 393 (394) T protein:vir:62 350 VADMLGFPKQNTKESQAIYISNDV-TEIGKKEATDGSLGGGEENE 393 (394) T ss_pred HHHHhCCCCCCCCCCCeeeccccc-ccccccccccccCCCCCCCC Confidence 8865 333333333222111000 00011111112222222222 No 180 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=97.05 E-value=0.00019 Score=40.96 Aligned_cols=344 Identities=9% Similarity=0.077 Sum_probs=140.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--H Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--K 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~ 78 (508) ||||.+.++ + . +.++. .-|..+..+. .+.....+... ..+..+ - T Consensus 1 M~~~~~f~~---r-~------------------~~~~~-----~~~~~~~~~~-~~~~~~~v~~~------~al~~~av~ 46 (359) T protein:vir:10 1 MSILNPFER---R-S------------------SITPN-----NYYPFMVQNG-SIVPNSLVDAT------EALKNSDLY 46 (359) T ss_pred Ccccchhhc---c-c------------------cCCCC-----cchhhhhccc-cccCCcccCHH------HhhcchHHH Confidence 999875332 1 0 00110 0011111111 11111111110 011222 1 Q ss_pred HHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYP 156 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~P 156 (508) ..|+.+|+-+-+-|. . ++......+.+--..-.-..-...++...+-.|.+++.+..+. |.+ .+..++|+.+-+ T Consensus 47 ~cv~~ia~~ia~~p~--~--~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i 122 (359) T protein:vir:10 47 AVTSLISSDIAGTRF--I--GNQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITI 122 (359) T ss_pred HHHHHHHHhhhcCcc--c--cchHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEE Confidence 223334433333332 1 2222222222211000111123334555666788877776654 543 466777777654 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) . .+++.+ + +.+.. .+++.. ..| + . .+ T Consensus 123 ~-~~~~~~----~-y~~~~-----------------~~~~~~----~~~------------~-----~-----~e----- 148 (359) T protein:vir:10 123 D-LTDDTL----T-YEVNQ-----------------FDDYPS----AKY------------N-----A-----SE----- 148 (359) T ss_pred E-EcCCeE----E-EEEEe-----------------cCCceE----EEE------------c-----c-----cc----- Confidence 2 232211 1 11100 000000 000 0 0 00 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc- Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE- 312 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~- 312 (508) ..+++.+-.+....+.-.|+|.+.-+...|.....+-....+-|+.| ++.-++ |+..+ +++....+... T Consensus 149 -----vih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l--~~e~~~~~~~~~ 221 (359) T protein:vir:10 149 -----MIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTL--SSEAKDSIRKEF 221 (359) T ss_pred -----eEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC--CHHHHHHHHHHH Confidence 12344332222222233588988888877776665555555566654 444333 22111 11111111100 Q ss_pred cceEeeecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhH Q lcl|Aclame:pro 313 QNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTR 387 (508) Q Consensus 313 ~~~~~~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~ 387 (508) .+.+.+-+.+. +++..++.++......++.+..+.....|....|++|..++..+....|...+...+...+ .++ T Consensus 222 ~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l 301 (359) T protein:vir:10 222 EKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFI 301 (359) T ss_pred HHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHH Confidence 00111000000 1222345444443344567777777889999999999999865444445555544443321 233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 388 SSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFL 467 (508) Q Consensus 388 ~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l 467 (508) .-++.+++.+|..-+ .++.+.-+..|.+.......+++.+|+|+.-+++ T Consensus 302 ~p~~~~l~~~l~~~~-------------------------------~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R 350 (359) T protein:vir:10 302 EPLISELRIKCDSSI-------------------------------GVDMSPITDYSNSVFKADILNWVKEGIIEPTEAK 350 (359) T ss_pred HHHHHHHHHHhhhhh-------------------------------cccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHH Confidence 333333333322110 0111111222334445556667788888888877 Q ss_pred Hhc--CCCC Q lcl|Aclame:pro 468 QRN--YGMT 474 (508) Q Consensus 468 ~~~--~~~~ 474 (508) ... +.+= T Consensus 351 ~~l~~~pv~ 359 (359) T protein:vir:10 351 TLLESKGII 359 (359) T ss_pred HHhCCCCCC Confidence 642 2222 No 181 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=97.00 E-value=0.00022 Score=40.66 Aligned_cols=395 Identities=10% Similarity=0.037 Sum_probs=157.1 Q ss_pred HhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCC--CccccccccccchHHHHHHHHHHhhhcCcceEeeCCcH-- Q lcl|Aclame:pro 26 KITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASD--GIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNN-- 101 (508) Q Consensus 26 ~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~--~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~-- 101 (508) -.+.+-.+..+|++-+....-...|.+.+. ...... ..-........+.-...|+.+|+-+-+=|+.+--.+++ T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~ 78 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPA--VGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTE 78 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccce--eceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcc Confidence 012223333344333322211122222211 110000 00000000001111233444444443334444221111 Q ss_pred --HHHHHHHHHHHh-hh---HHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEE Q lcl|Aclame:pro 102 --EADKFLNDVLED-ND---FKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISEAAIASRT 173 (508) Q Consensus 102 --~~~~~l~~~l~~-n~---f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~ 173 (508) ..+..+..++.. |. ...-.+.++...+..|.+++.+..+. |++ .+..++|+.+-+.....+.. T Consensus 79 ~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~--------- 149 (518) T protein:vir:78 79 TEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGR--------- 149 (518) T ss_pred ccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCE--------- Confidence 001122233332 21 12234445666777898888777664 443 56677787776542211111 Q ss_pred EEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccc Q lcl|Aclame:pro 174 QRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI 253 (508) Q Consensus 174 ~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~ 253 (508) ++..+. ...+.+. ..+ .++. .+ ..+++.+-++ T Consensus 150 ---------~~y~~~----~~~~~~~---------------~~~---~~~~-----~e----------IiHir~~~~d-- 181 (518) T protein:vir:78 150 ---------YEYYFQ----AGAGVGT---------------QLV---SFAD-----DE----------VVPIRFFNPD-- 181 (518) T ss_pred ---------EEEEEE----ecCCccc---------------eeE---EecC-----Cc----------EEEecCCCCC-- Confidence 100000 0000000 000 0000 00 2234432222 Q ss_pred cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCcc-cceEeeec-CC----CC Q lcl|Aclame:pro 254 NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVL-SD----DN 324 (508) Q Consensus 254 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~----~~ 324 (508) +...|+|.+.-+...|.....+-....+-|+. +.+..++ +..+ +++....+... .+.|.+.. .+ -+ T Consensus 182 --g~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~l---s~e~~~~~k~~~~~~~~G~~nag~~~vL~ 256 (518) T protein:vir:78 182 --GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL---SPEAQQRLREQFDRAHAGSSNTGKTMVVE 256 (518) T ss_pred --cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC---CHHHHHHHHHHHHHHhcCcccCCceeEcC Confidence 22358888887777766665554444555665 4554443 2111 11111001000 00111100 00 01 Q ss_pred CCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 NGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQ 403 (508) Q Consensus 325 ~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~ 403 (508) ++..++.++.+....++.+..+.....|....|++|..+++...+. .++++....+ ...++.-....++..|...+ T Consensus 257 ~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f--~~~tL~P~~~~ie~eln~~L- 333 (518) T protein:vir:78 257 EGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF--YRDTMAIPIARIQSAMDKYV- 333 (518) T ss_pred CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH--HHHHHHHHHHHHHHHHHHhh- Confidence 2223555554444456667777778899999999999998765432 2222211111 11122223333333332211 Q ss_pred HHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHHHHH Q lcl|Aclame:pro 404 SIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAEE 481 (508) Q Consensus 404 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea~~e 481 (508) ... + ...+.+.|+.+.-+..|.++.++...+++..|+|+.-+++... +-+++....+. T Consensus 334 -----------~~~----~-----~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~~ 393 (518) T protein:vir:78 334 -----------GQY----W-----VRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADEL 393 (518) T ss_pred -----------ccc----c-----cCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee Confidence 100 0 0123466666676788999999999999999999999988653 22322122211 Q ss_pred -----HHHHH--------HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 482 -----LAKIQ--------SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 482 -----~~ri~--------~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..+. .++++. ++.+.....+++|-+ T Consensus 394 ~v~~n~~pl~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 432 (518) T protein:vir:78 394 YANSALQPLGATPDGAVEGEEAPA-PKRPASTPVASLDQS 432 (518) T ss_pred eecccceecccccccccCCCCCCC-CCCCCcccccccccC Confidence 11110 000111 111111111111110 No 182 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=96.93 E-value=0.00025 Score=40.30 Aligned_cols=369 Identities=11% Similarity=0.067 Sum_probs=148.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+++..- + . ....-..+ .+. ..+-+ .+.....+.... .....--... T Consensus 1 Mg~f~~~~~~--~---------~-----~~~~~~~~-----~~~---~~~~~--~~~~~~~v~~~~----~l~~~~v~~~ 50 (382) T protein:vir:48 1 MPIFNLATES--P---------P-----DNQGGFFD-----VVD---SDFLA--SLKGNEWVSAET----ALRNSDLFSI 50 (382) T ss_pred CccccccccC--C---------c-----cccccccc-----chh---hhccc--cccCCcccchHh----hhccHHHHHH Confidence 9998764321 0 0 00000000 000 00000 011111111000 0011111233 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQ 158 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~ 158 (508) ++.+|+-+-+=|+.+. +.. .+..+.+--..-....-++.++...+..|.+++.+.-|. |++ .+.+++|+.+-++. T Consensus 51 i~~ia~~ia~~~~~~~--~~~-~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~ 127 (382) T protein:vir:48 51 INQLSNDLATVKLITS--RKK-LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNR 127 (382) T ss_pred HHHHHHhhccCceeee--cch-hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 4444444433343333 222 122222211111223445556667788898888777664 543 67778888876543 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) .+.+... .|. ++ ..+ . ..|..+. ++. .+ T Consensus 128 ~~~~~~~-----------------~y~---~~-~~~--~--------------~~~~~~~---~~~-----~e------- 155 (382) T protein:vir:48 128 LDNKDGI-----------------YYN---IT-FDD--P--------------RIPPKQH---VPQ-----ND------- 155 (382) T ss_pred cCCCCeE-----------------EEE---EE-ecC--c--------------cccceeE---EcC-----cc------- Confidence 3322210 110 00 000 0 0011100 000 00 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCc---- Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDT---- 311 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~---- 311 (508) +.+++.+-+ .+...|.|-+.-+...|+.....-.....-|+. +.+..++ +..+ +++....+.. T Consensus 156 ---vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~---~~e~~~~~~~~~~~ 225 (382) T protein:vir:48 156 ---VLHFRLLSV----DGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGG---LLDFKTKLSRSRQA 225 (382) T ss_pred ---EEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC---ChHHHHHHHHHHHh Confidence 234443322 234579999888888886655444444555665 4555444 2111 0110000000 Q ss_pred -ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 312 -EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 312 -~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) ..+....+-. +++..++.++.....-+..+..+...++|....|++|..+|...+...++.+...- ...++.-. T Consensus 226 ~~~n~g~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~~~~~~~---~~~~l~p~ 300 (382) T protein:vir:48 226 MKQMQGGPLVL--DDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSSLEMSSDL---YSKAVSRY 300 (382) T ss_pred hccCCCCeeEc--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHH---HHHHHHHH Confidence 0000111111 12223555655555556677788888899999999999998654432222211111 11222222 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh- Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR- 469 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~- 469 (508) .+.++..|...+ +.... .+....++ .+.......+.++..+|++++-+++.. T Consensus 301 ~~~i~~~l~~~l------------~~~~~---------~~~~~~~~------~~~~~~~~~~~~l~~~g~~t~~e~r~~l 353 (382) T protein:vir:48 301 LRPFLSELSQKL------------SCDVD---------ADIFPAVD------PTGSNYISRINSLVKTGTLAQNQGLYIL 353 (382) T ss_pred HHHHHHHHHHHh------------cChhh---------hhhhhhhc------cchhHHHHHHHHHhhcCccCHHHHHHHH Confidence 333333332221 00000 00011111 223444555667788899999888754 Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 -NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 -~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..|+..+++ .+ .++..+...+| ++ +++ T Consensus 354 ~~~g~~~~~~----~~--~~~~~~~~~GG----d~--~~~ 381 (382) T protein:vir:48 354 QQAEILPKEL----PN--GENPNSTLKGG----EE--DGQ 381 (382) T ss_pred hhCCCCCcch----hh--hhcCCCCCCCC----CC--CCC Confidence 234433332 21 12221111111 11 111 No 183 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=96.87 E-value=0.00029 Score=40.00 Aligned_cols=437 Identities=12% Similarity=0.149 Sum_probs=185.0 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAAR 82 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~ 82 (508) |=+.++.-+ ++ ..+.+++-.+ .+..++..-...|+.++.---|.+-... +......++-=.-+...++ T Consensus 1 ~~~~~~~~~--~~----~~~~l~~r~~----~L~~~R~~~e~~w~e~a~~~lP~~~~~~--~~~~~~~~~~dstg~~a~~ 68 (516) T protein:vir:10 1 MKQSTDLEY--GG----KRSKIPKLWE----KFSTKRSSFLDRAKHYSKLTLPYLMNDK--GDNETSQNGWQGVGAQATN 68 (516) T ss_pred CCchhhHhh--hh----HHHHHHHHHH----HHHHhhhHHHHHHHHHHHhhcccccCCC--CCcccccccccchHHHHHH Confidence 101110000 00 0122222222 2233444456677777754444321111 1111122222234455556 Q ss_pred HHHHhhhcC--c-----ceEeeCCc------------HHHHHHH-------HHHHHhhhHHHHHHHHHHHHhhcCCEEEE Q lcl|Aclame:pro 83 RIASVVFNE--K-----AEIHVKDN------------NEADKFL-------NDVLEDNDFKNKFEEALEKGVALGGFAMR 136 (508) Q Consensus 83 ~~A~ll~~e--~-----~~i~~~~~------------~~~~~~l-------~~~l~~n~f~~~~~~~~~~a~~~G~~~~~ 136 (508) .+|+-|.+- | .++.+++. ...+++| ...+..++|...+.++..+....|.+.+ T Consensus 69 ~LAa~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l- 147 (516) T protein:vir:10 69 HLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCML- 147 (516) T ss_pred HHHHHHHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeE- Confidence 665555433 1 23333221 1133333 3456678899999999999999999864 Q ss_pred EEEeCCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe--------------------ecCCcEEEEEEEEEEEeCC Q lcl|Aclame:pro 137 PYIDGNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT--------------------ESNQTKYYTLLEFHQWQDN 195 (508) Q Consensus 137 ~~~d~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~--------------------~~~~~~~yt~lE~h~~~~~ 195 (508) |.|... .+..+|-.+++ +..| +|++..+++..++... ....-..||++++ .++ T Consensus 148 -~~d~~~-~~~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~---~~~ 221 (516) T protein:vir:10 148 -YKPSKG-AISAIPMHHYV-VNRDTNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKY---LGE 221 (516) T ss_pred -EecCCC-CeEEEEcCeEE-EeeCCCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEe---cCC Confidence 556432 25567777766 4444 5666665543321110 0011134444443 223 Q ss_pred ceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHH Q lcl|Aclame:pro 196 GSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIN 275 (508) Q Consensus 196 g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD 275 (508) +.+. +|...+...+ .....| .+...|-..+.| +...++.+|+|--..+.+-++.|+ T Consensus 222 ~~~~----~~~~~d~~~~------~~~s~~-------~~~e~P~~~~Rw-------~~~~ge~YGrgp~~~~L~D~k~L~ 277 (516) T protein:vir:10 222 GFWE----LKQSADDIPV------GKVSKI-------KSEKLPFIPLTW-------KRSYGEDWGRPLAEDYSGDLFVIQ 277 (516) T ss_pred CceE----EEEeeCceee------cccccc-------ccccCCeeeeee-------eecCCCCcccchHHHhhHHHHHHH Confidence 2221 1111111111 111100 011112112222 233467899999999999999999 Q ss_pred HHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 DTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFIKEF 352 (508) Q Consensus 276 ~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l~~i 352 (508) ..--...... ...++...||++.+.. + ....+.....+. ... . ..+..++ +..+.......++.+.+.| T Consensus 278 ~l~~~~l~~~~~a~~~~~lv~p~g~~~-~--~~l~~~~~g~~~--~g~-~--~~v~~~q~~~~~d~~~~~~~i~~~~~rI 349 (516) T protein:vir:10 278 FLSEAVARGAALMADIKYLIRPGAQTD-V--DHFVNSGTGEVV--TGV-E--EDIHIVQLGKYADLTPISAVLEVYTRRI 349 (516) T ss_pred HHHHHHHHHHHHhcCCCcccCcccccc-h--hhhccCCCceee--cCC-c--ccceeeecCcccchHHHHHHHHHHHHHH Confidence 6555444433 4567777775543211 0 011111112222 111 1 1233333 3234455556666666666 Q ss_pred HHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccccccccccccCcc Q lcl|Aclame:pro 353 EVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMV-EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPL 431 (508) Q Consensus 353 ~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~-~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 431 (508) ....=++. +.-..+...|||||....+.+.+...-.-..+ ..-|..|+.-++ .....-.+ ..-+ T Consensus 350 ~~af~~~~--l~~rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~--~~~~p~~P-----------~~lv 414 (516) T protein:vir:10 350 GVVFMMET--MTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGL--LEAGDSFT-----------SDLV 414 (516) T ss_pred HHHHhhhh--hhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhhCCCCC-----------hhhc Confidence 44332221 12223345799999999988888777633322 223334443322 11111111 0111 Q ss_pred eEEEEeCCCccC-CHHHHHH---HHHHHHh--CCCCCHH-----------HHHHhcCC------CCHHHHHHHHHHHHHh Q lcl|Aclame:pro 432 DIECHFDDGVFV-NKDKQLE---EDAKVLA--IGALSKQ-----------TFLQRNYG------MTDEQAAEELAKIQSE 488 (508) Q Consensus 432 ei~i~f~d~i~~-d~~~e~~---~~~~~~~--~Gi~s~e-----------t~l~~~~~------~~deea~~e~~ri~~E 488 (508) .+++. .++.. -+.++++ +..+.++ +++ ++. ..+....| -++||++++.++.++. T Consensus 415 ~~~~v--~~i~~L~raq~~~~i~~~~q~i~~~~q~-~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~ 491 (516) T protein:vir:10 415 DPVII--TGIEALGRMAELDKLANFAQYMSLPLQW-PEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQA 491 (516) T ss_pred Cccee--hhHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHH Confidence 11111 11110 1111111 1122221 111 111 11122222 2557777666555444 Q ss_pred ccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 489 APTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 489 ~~~~~~~~~~~~~~~~~~g~ 508 (508) ++..+....+....+|.-|+ T Consensus 492 q~~~~~~~~~~~~~~~~~~~ 511 (516) T protein:vir:10 492 QQAQMLEEGVAKAVPGVIQQ 511 (516) T ss_pred HHHHHHHHHhhhcccchhhh Confidence 43333333334444555555 No 184 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=96.83 E-value=0.00031 Score=39.81 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=156.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCH-HHHHHHHHHHHHhc-------CCCc----ccc-Cc-cCCCcc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDP-DEYVRIQTDLDYYS-------DKLQ----YIH-YQ-ASDGIK 66 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~i~~~~~~Y~-------g~~~----~~~-~~-~~~~~~ 66 (508) -.+|++++= +...+..++ ..|..|.=+. .....|+..-.+|. ++.+ ++- -. ...+.+ T Consensus 2 ~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (563) T protein:vir:95 2 ADLFKQFRL-----GKDYGNNST----IAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFR 72 (563) T ss_pred hhhhhhhhc-----ccccccccc----cceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccccc Confidence 223332221 111111111 2222220000 12222333222221 1110 000 00 000000 Q ss_pred cc-------------cccc-ccchHHHHH----HHHHHhhhc----C---cceEeeC-----CcHH---HHHHHHHHHH- Q lcl|Aclame:pro 67 KK-------------RLKN-TINMAKTAA----RRIASVVFN----E---KAEIHVK-----DNNE---ADKFLNDVLE- 112 (508) Q Consensus 67 ~~-------------~~~~-~~n~~~~iv----~~~A~ll~~----e---~~~i~~~-----~~~~---~~~~l~~~l~- 112 (508) .+ .+.. ...+...++ +..|.|.+. + ...|.+. .... ....|...|. T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~ 152 (563) T protein:vir:95 73 DKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVN 152 (563) T ss_pred ccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhh Confidence 00 0000 012333333 344433221 1 0112111 1111 1122333332 Q ss_pred ---h-----hhHHHHHHHHHHHHhhcCCEEEEEEEe---CCe-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCC Q lcl|Aclame:pro 113 ---D-----NDFKNKFEEALEKGVALGGFAMRPYID---GNH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQ 180 (508) Q Consensus 113 ---~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d---~~~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~ 180 (508) + ..|...+..++...+..|.+++.+.+. .|+ +.+..++|..+.++..+++.+.. . T Consensus 153 ~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~-------------~ 219 (563) T protein:vir:95 153 TGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIK-------------G 219 (563) T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceec-------------c Confidence 1 135566677788889999888776653 244 36778899988876433332210 0 Q ss_pred cEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCC Q lcl|Aclame:pro 181 TKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLG 260 (508) Q Consensus 181 ~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG 260 (508) ...|.. ..+ |.... .| + ..++ .+ ++++|..+ ....++| T Consensus 220 ~~~y~~-----~~~-g~~~~---~~------------~----------~~ev-------I~--~~~~~~~d--~~~~~~G 257 (563) T protein:vir:95 220 GKRFVQ-----VVD-KRVVA---SF------------T----------SREL-------AM--GIRNPRTE--LSSSGYG 257 (563) T ss_pred ceeEEE-----EeC-CceeE---Ee------------c----------Ccce-------EE--EeccCCCC--cccCccc Confidence 001110 000 10000 00 0 0000 00 12222111 1124579 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceEeeecCC------CCCCCcce Q lcl|Aclame:pro 261 LGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSD------DNNGLGVK 330 (508) Q Consensus 261 ~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~i~ 330 (508) +|.+.-+...|.....+.....+-|+.| .+.-++ +... .-+++....+... ...|.+.... -+++..++ T Consensus 258 ~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~-~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~ 336 (563) T protein:vir:95 258 LSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQ-QQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFV 336 (563) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-CCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEE Confidence 9998888887766555544455556654 555333 2111 0011110000000 0011111000 01223355 Q ss_pred EeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH-HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 331 DMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE-VVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFEL 408 (508) Q Consensus 331 ~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte-i~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l 408 (508) .++.+....++++..+...+.|....|++|..+|+...+..+++. ..+.. ..++.. ....++.+|..++..+... T Consensus 337 ~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~---~sn~e~~~~~f~~~tL~P~l~~ie~~ 413 (563) T protein:vir:95 337 NMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLN---EADPGKKQQQSQNKGLQPLLRFIEDL 413 (563) T ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchh---hccHHHHHHHHHHHHHHHHHHHHHHH Confidence 555555566778888888999999999999999886544322111 11111 111111 1223444444444443322 Q ss_pred HhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH-HHHHH------- Q lcl|Aclame:pro 409 ANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD-EQAAE------- 480 (508) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d-eea~~------- 480 (508) .+.. ++.. + ...+.+.|...-..++ .++....+++.+|+|+.-+++..+ |+.+ +.... T Consensus 414 ln~~-L~~~----~-------~~~~~~~f~r~D~~~~-~e~~~~~~~~~~G~lT~NE~R~~~-gl~Pi~gGD~~~~~~~~ 479 (563) T protein:vir:95 414 VNRH-IISE----Y-------GDKYTFQFVGGDTKSA-TDKLNILKLETQIFKTVNEAREEQ-GKKPIEGGDIILDASFL 479 (563) T ss_pred HHhh-hchh----c-------ccccEEEeccCCHHHH-HHHHHHHHHhcCCccCHHHHHHHh-CCCCCCCcceeeccccc Confidence 2211 1110 0 1234566765433332 223234456788999999988753 2211 00000 Q ss_pred -------------------HHHHHHH--hccCCCCC--CcccccCCC-CCCC Q lcl|Aclame:pro 481 -------------------ELAKIQS--EAPTDTFE--GGRSAILNG-GDGE 508 (508) Q Consensus 481 -------------------e~~ri~~--E~~~~~~~--~~~~~~~~~-~~g~ 508 (508) -.+..+. +.+...++ ++..+..++ ..|+ T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (563) T protein:vir:95 480 QGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGT 531 (563) T ss_pred ccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccc Confidence 0000000 00000000 110000000 0000 No 185 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=96.83 E-value=0.00031 Score=39.81 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=156.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCH-HHHHHHHHHHHHhc-------CCCc----ccc-Cc-cCCCcc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDP-DEYVRIQTDLDYYS-------DKLQ----YIH-YQ-ASDGIK 66 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~i~~~~~~Y~-------g~~~----~~~-~~-~~~~~~ 66 (508) -.+|++++= +...+..++ ..|..|.=+. .....|+..-.+|. ++.+ ++- -. ...+.+ T Consensus 2 ~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (563) T protein:vir:99 2 ADLFKQFRL-----GKDYGNNST----IAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFR 72 (563) T ss_pred hhhhhhhhc-----ccccccccc----cceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccccc Confidence 223332221 111111111 2222220000 12222333222221 1110 000 00 000000 Q ss_pred cc-------------cccc-ccchHHHHH----HHHHHhhhc----C---cceEeeC-----CcHH---HHHHHHHHHH- Q lcl|Aclame:pro 67 KK-------------RLKN-TINMAKTAA----RRIASVVFN----E---KAEIHVK-----DNNE---ADKFLNDVLE- 112 (508) Q Consensus 67 ~~-------------~~~~-~~n~~~~iv----~~~A~ll~~----e---~~~i~~~-----~~~~---~~~~l~~~l~- 112 (508) .+ .+.. ...+...++ +..|.|.+. + ...|.+. .... ....|...|. T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~ 152 (563) T protein:vir:99 73 DKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVN 152 (563) T ss_pred ccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhh Confidence 00 0000 012333333 344433221 1 0112111 1111 1122333332 Q ss_pred ---h-----hhHHHHHHHHHHHHhhcCCEEEEEEEe---CCe-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCC Q lcl|Aclame:pro 113 ---D-----NDFKNKFEEALEKGVALGGFAMRPYID---GNH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQ 180 (508) Q Consensus 113 ---~-----n~f~~~~~~~~~~a~~~G~~~~~~~~d---~~~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~ 180 (508) + ..|...+..++...+..|.+++.+.+. .|+ +.+..++|..+.++..+++.+.. . T Consensus 153 ~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~-------------~ 219 (563) T protein:vir:99 153 TGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIK-------------G 219 (563) T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceec-------------c Confidence 1 135566677788889999888776653 244 36778899988876433332210 0 Q ss_pred cEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCC Q lcl|Aclame:pro 181 TKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLG 260 (508) Q Consensus 181 ~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG 260 (508) ...|.. ..+ |.... .| + ..++ .+ ++++|..+ ....++| T Consensus 220 ~~~y~~-----~~~-g~~~~---~~------------~----------~~ev-------I~--~~~~~~~d--~~~~~~G 257 (563) T protein:vir:99 220 GKRFVQ-----VVD-KRVVA---SF------------T----------SREL-------AM--GIRNPRTE--LSSSGYG 257 (563) T ss_pred ceeEEE-----EeC-CceeE---Ee------------c----------Ccce-------EE--EeccCCCC--cccCccc Confidence 001110 000 10000 00 0 0000 00 12222111 1124579 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceEeeecCC------CCCCCcce Q lcl|Aclame:pro 261 LGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSD------DNNGLGVK 330 (508) Q Consensus 261 ~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~i~ 330 (508) +|.+.-+...|.....+.....+-|+.| .+.-++ +... .-+++....+... ...|.+.... -+++..++ T Consensus 258 ~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~-~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~ 336 (563) T protein:vir:99 258 LSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQ-QQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFV 336 (563) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-CCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEE Confidence 9998888887766555544455556654 555333 2111 0011110000000 0011111000 01223355 Q ss_pred EeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH-HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 331 DMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE-VVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFEL 408 (508) Q Consensus 331 ~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte-i~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l 408 (508) .++.+....++++..+...+.|....|++|..+|+...+..+++. ..+.. ..++.. ....++.+|..++..+... T Consensus 337 ~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~---~sn~e~~~~~f~~~tL~P~l~~ie~~ 413 (563) T protein:vir:99 337 NMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLN---EADPGKKQQQSQNKGLQPLLRFIEDL 413 (563) T ss_pred eccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchh---hccHHHHHHHHHHHHHHHHHHHHHHH Confidence 555555566778888888999999999999999886544322111 11111 111111 1223444444444443322 Q ss_pred HhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH-HHHHH------- Q lcl|Aclame:pro 409 ANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD-EQAAE------- 480 (508) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d-eea~~------- 480 (508) .+.. ++.. + ...+.+.|...-..++ .++....+++.+|+|+.-+++..+ |+.+ +.... T Consensus 414 ln~~-L~~~----~-------~~~~~~~f~r~D~~~~-~e~~~~~~~~~~G~lT~NE~R~~~-gl~Pi~gGD~~~~~~~~ 479 (563) T protein:vir:99 414 VNRH-IISE----Y-------GDKYTFQFVGGDTKSA-TDKLNILKLETQIFKTVNEAREEQ-GKKPIEGGDIILDASFL 479 (563) T ss_pred HHhh-hchh----c-------ccccEEEeccCCHHHH-HHHHHHHHHhcCCccCHHHHHHHh-CCCCCCCcceeeccccc Confidence 2211 1110 0 1234566765433332 223234456788999999988753 2211 00000 Q ss_pred -------------------HHHHHHH--hccCCCCC--CcccccCCC-CCCC Q lcl|Aclame:pro 481 -------------------ELAKIQS--EAPTDTFE--GGRSAILNG-GDGE 508 (508) Q Consensus 481 -------------------e~~ri~~--E~~~~~~~--~~~~~~~~~-~~g~ 508 (508) -.+..+. +.+...++ ++..+..++ ..|+ T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (563) T protein:vir:99 480 QGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGT 531 (563) T ss_pred ccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccc Confidence 0000000 00000000 110000000 0000 No 186 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=96.80 E-value=0.00033 Score=39.68 Aligned_cols=432 Identities=11% Similarity=0.089 Sum_probs=162.8 Q ss_pred CChHHHHHHHHHHHHHh-hhhhhhhHHhhccccccCCHHHHHH-HHHHHHHhcCCC----ccccC-------ccCCCccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAA-TGVTGSLSKITDDPRISIDPDEYVR-IQTDLDYYSDKL----QYIHY-------QASDGIKK 67 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-i~~~~~~Y~g~~----~~~~~-------~~~~~~~~ 67 (508) .|+=+.--.=||+.... |.....=+++. |... .+.+.+++ +..-..-|.... ++-.. ++....+. T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (574) T protein:vir:80 9 LGIEKSSIEETRNMENYKMHLREIDTNVV-NNEP-YSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHK 86 (574) T ss_pred hccchhhHHHHHhhhhhccccchhhhhhh-hccC-CCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHH Confidence 44433322224444444 44333322222 1110 01111111 110001111111 00000 00000000 Q ss_pred c-ccccccchHHHHHHHHHHhhh------cC-----cceEeeCCc--------HHHHHHHHHHHHh---------hhHHH Q lcl|Aclame:pro 68 K-RLKNTINMAKTAARRIASVVF------NE-----KAEIHVKDN--------NEADKFLNDVLED---------NDFKN 118 (508) Q Consensus 68 ~-~~~~~~n~~~~iv~~~A~ll~------~e-----~~~i~~~~~--------~~~~~~l~~~l~~---------n~f~~ 118 (508) . +....-.+...+++..++-+. .+ |..|-..+. ......|..++.+ ..|.. T Consensus 87 ~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~e 166 (574) T protein:vir:80 87 TLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTT 166 (574) T ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHH Confidence 0 000011122222232222221 11 233322111 0112234455532 12344 Q ss_pred HHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCc Q lcl|Aclame:pro 119 KFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNG 196 (508) Q Consensus 119 ~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g 196 (508) .+..++...+..|.+++.+..+. |++ .+..++|..+.+.....+... ..+..|.. ..+++ T Consensus 167 f~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~-------------~~~~~y~~-----~~~g~ 228 (574) T protein:vir:80 167 FCKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLI-------------KNGERFVQ-----VIDNR 228 (574) T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccc-------------cCceEEEE-----EeCCc Confidence 55666777888899988777764 554 577788888887532222110 01111110 01111 Q ss_pred eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHH Q lcl|Aclame:pro 197 SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIND 276 (508) Q Consensus 197 ~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~ 276 (508) . .. .| + ..+ ..|++.. ++......++|+|.+.-+...|..... T Consensus 229 ~-~~---~~-----------------~-----~~e----------iih~~~~-~~~~~~~~~~G~spi~~a~~~i~~~~~ 271 (574) T protein:vir:80 229 I-VA---KF-----------------N-----ERE----------LAFAVRN-PRADIEVGQYGYPELEIALKQFIAHEN 271 (574) T ss_pred e-EE---EE-----------------c-----ccc----------EEEEecc-CCCCcccccccccHHHHHHHHHHHHHH Confidence 0 00 00 0 000 1223211 111112345799998888888776665 Q ss_pred HHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceEee--------ecCCCCCCCcceEeeccCCHHHHHHH Q lcl|Aclame:pro 277 THDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVG--------VLSDDNNGLGVKDMTTPIRTVQYKDA 344 (508) Q Consensus 277 ~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~i~~~~~dir~e~~~~~ 344 (508) +-....+-|+.| .+.-++ +... .-+++....+... ...|.+ +-. +++..++.++......++.+. T Consensus 272 a~~~~~~~f~ng~~p~gil~~~~~~-~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~--~~G~~~~~l~~s~~D~qfle~ 348 (574) T protein:vir:80 272 TEVFNDRFFSHGGTTRGILHVKTGQ-QQSQQALDIFRREWRSSLAGINGSWQIPVVS--AEDVKFVNMTPSANDMQFEKW 348 (574) T ss_pred HHHHHHHHHhccCCCceEEEeCCCC-CCCHHHHHHHHHHHHHHhccccccccceeec--CCCceEEEccCChhHHHHHHH Confidence 544445556654 455333 1100 0011100000000 011111 111 122235555555555667777 Q ss_pred HHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhccccccccccc Q lcl|Aclame:pro 345 IDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFELANAGALFDDGKPLFT 423 (508) Q Consensus 345 l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~ 423 (508) .+...+.|....|++|..+|+...+..+++.+.+.+ +.++.. ....++.+|..++..+....+.. ++.. + T Consensus 349 ~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n---~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~-Ll~~----~- 419 (574) T protein:vir:80 349 LNYLINVISALYGIDPAEINFPNNGGATGSKGGSLN---EGNSKEKMQASQNKGLQPLLRFIEDTVNTY-IVAE----F- 419 (574) T ss_pred HHHHHHHHHHHhCCCHHHhccccccccccccccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhh----c- Confidence 888889999999999999988655433222221111 111111 11223334444444333222211 1100 0 Q ss_pred cccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHH-------------H------HHHH Q lcl|Aclame:pro 424 LDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQ-------------A------AEEL 482 (508) Q Consensus 424 ~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~dee-------------a------~~e~ 482 (508) ...+.+.|+..-..+ ..+.....+++.+|+|+.-+++... +-+..-+ . +.+- T Consensus 420 ------~~~~~~~f~~~d~~~-~~~~~~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~ 492 (574) T protein:vir:80 420 ------GEKYQFQFRGGDLSA-QLDKLKIIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQR 492 (574) T ss_pred ------CCceEEEecccchhh-HHHHHHHHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccc Confidence 112445566544444 3344455667788999999988763 2221100 0 0000 Q ss_pred HHHHHhc-----cCCCCCCccccc-CCCCCCC Q lcl|Aclame:pro 483 AKIQSEA-----PTDTFEGGRSAI-LNGGDGE 508 (508) Q Consensus 483 ~ri~~E~-----~~~~~~~~~~~~-~~~~~g~ 508 (508) ++....+ ...+..++.+.+ ....|.+ T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 524 (574) T protein:vir:80 493 SQDRLNRLLELSGGDVEQPEPEEPKDSQNDTD 524 (574) T ss_pred hhccccccccccCCCCCCCCCCCCCCcccccc Confidence 0000000 000000000000 0001111 No 187 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=96.75 E-value=0.00036 Score=39.45 Aligned_cols=437 Identities=11% Similarity=0.149 Sum_probs=179.5 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAAR 82 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~ 82 (508) |-+.+ ++-++ ..+++++-.+ .+..++..-...|+.++.--.|.+-.....+.+ ..++-=.-+...++ T Consensus 1 ~~~~~---~~~~~----~~~~l~~r~~----~Lk~~R~~~e~~w~e~~~~tlP~~~~~~~~~~~--~~~~~dstg~~a~~ 67 (515) T protein:vir:70 1 MQDTI---LEYGG----QRSKIPKLWE----KFSKKRSPYLDRAKHFAKLTLPYLMNNKGDNET--SQNGWQGVGAQATN 67 (515) T ss_pred Ccchh---hhhcC----CHHHHHHHHH----HHHHhhhHHHHHHHHHHHHhcccccCCCCCccc--ccccccchHHHHHH Confidence 11110 00000 1122222221 222334444556766665444422111111111 11111134445555 Q ss_pred HHHHhhhcC--c-----ceEeeCCc----------H--HHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEE Q lcl|Aclame:pro 83 RIASVVFNE--K-----AEIHVKDN----------N--EADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMR 136 (508) Q Consensus 83 ~~A~ll~~e--~-----~~i~~~~~----------~--~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~ 136 (508) .+|+-|.+- | +++++++. + ..+++ +...+..++|...+.++..+....|.+.+ T Consensus 68 ~LAa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l- 146 (515) T protein:vir:70 68 HLANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLL- 146 (515) T ss_pred HHHHHHHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEE- Confidence 555554432 1 23333221 1 12223 33346678899999999999999998864 Q ss_pred EEEeCCeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEe--------------------ecCCcEEEEEEEEEEEeCC Q lcl|Aclame:pro 137 PYIDGNHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRT--------------------ESNQTKYYTLLEFHQWQDN 195 (508) Q Consensus 137 ~~~d~~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~--------------------~~~~~~~yt~lE~h~~~~~ 195 (508) |.|... .+.++|-.+++ +..| +|++..+++..++... ....-.+|+++++ .+. T Consensus 147 -~~d~~~-~~~~~pl~~y~-v~~d~~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~---~~~ 220 (515) T protein:vir:70 147 -YKPSKG-AMSAVPMHHYV-VNRDTNGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQY---AGE 220 (515) T ss_pred -EEeCCC-CeEEEEcCeEE-EeeCCCcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEe---cCC Confidence 455432 25667777766 4445 5566555443322110 0011134444433 222 Q ss_pred ceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHH Q lcl|Aclame:pro 196 GSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDIN 275 (508) Q Consensus 196 g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD 275 (508) +.+. +|..-+...+| .+ ..| .+...|-..+.| +...++.+|+|--..+.+-++.|+ T Consensus 221 ~~~~----~~~e~d~~~~~-----~e-s~y-------~~~e~P~~~~Rw-------~~~~ge~YGrgp~~~~l~D~k~L~ 276 (515) T protein:vir:70 221 GFWK----INQSADDIPVG-----KE-SRI-------KSEKLPFIPLTW-------KRSYGEDWGRPLAEDYSGDLFVIQ 276 (515) T ss_pred CceE----EEEecCceeec-----cc-ccc-------ccccCCceeeee-------eecCCCCcccchHHHhhHHHHHHH Confidence 2222 12111111111 00 000 011112112222 233467799999999999999999 Q ss_pred HHHHHHHHHH-HhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEee--ccCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 DTHDQFIWEI-RLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMT--TPIRTVQYKDAIDHFIKEF 352 (508) Q Consensus 276 ~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~dir~e~~~~~l~~~l~~i 352 (508) ..--...... ...++...||++.+.. +.. ..+.....+. ... .+ .+..++ ...+.......++.+.+.| T Consensus 277 ~l~~~~l~~~~~a~~p~~lv~~~g~~~-~~~--l~~~~~g~iv--~g~-~~--~v~~~~~~~~~d~~~~~~~i~~~~~rI 348 (515) T protein:vir:70 277 FLSEAMARGAALMADIKYLIRPGSQTD-VDH--FVNSGTGEVI--TGV-AE--DIHIVQLGKYADLTPISAVLEVYTRRI 348 (515) T ss_pred HHHHHHHHHHHHhcCCCeeeCcccccc-hhh--ccccCCceee--cCC-cc--cceeeecCcccchhHHHHHHHHHHHHH Confidence 7655555533 5667777776543311 100 0111111221 111 11 233333 3233455556666666666 Q ss_pred HHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccccccccccccCcc Q lcl|Aclame:pro 353 EVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVE-KAIDELCQSIFELANAGALFDDGKPLFTLDSASQPL 431 (508) Q Consensus 353 ~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~-~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 431 (508) ....=++. +.-..+...|||||....+...+...-.-..++ .-|..|+..++ .. ..+. .+... T Consensus 349 ~~af~~~~--l~~rd~~rvTAtEV~~r~~E~~~~LGpv~srL~~Ell~Pli~r~~--~~---~~p~--------~P~~~- 412 (515) T protein:vir:70 349 GVIFMMET--MTRRDAERVTAVEIQRDALEIEQNMGGVYSLFAMTMQTPIAMWGL--QE---AGDS--------FTSEL- 412 (515) T ss_pred HHHHhhhh--hhccCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--Hh---hCCC--------CChhh- Confidence 43331221 111223347999999999888877765332222 22333333221 11 1110 11111 Q ss_pred eEEEEeCCCccC-CHHHHHHHH---HHHHh--CCC-------CCHHHHH---HhcCC----C--CHHHHHHHHHHHHHhc Q lcl|Aclame:pro 432 DIECHFDDGVFV-NKDKQLEED---AKVLA--IGA-------LSKQTFL---QRNYG----M--TDEQAAEELAKIQSEA 489 (508) Q Consensus 432 ei~i~f~d~i~~-d~~~e~~~~---~~~~~--~Gi-------~s~et~l---~~~~~----~--~deea~~e~~ri~~E~ 489 (508) +.++.-.++.. -+...++.+ .+.++ +++ +....++ ....| + |+||++++.++.++.+ T Consensus 413 -v~~~~vs~l~~L~r~q~~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~ 491 (515) T protein:vir:70 413 -VDPVIVTGIEALGRMAELDKLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQ 491 (515) T ss_pred -cccceehhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHH Confidence 22222112211 111122211 22221 111 1111111 11222 2 6677777665544333 Q ss_pred cCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 490 PTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 490 ~~~~~~~~~~~~~~~~~g~ 508 (508) ....-..+.....++.-|| T Consensus 492 ~~~~~~~~~~~a~~~~~~~ 510 (515) T protein:vir:70 492 QEAMLNEGVAKAVPGVIQQ 510 (515) T ss_pred HHHHHHHhhhhhcccchhh Confidence 2222222222223333333 No 188 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=96.71 E-value=0.00039 Score=39.27 Aligned_cols=374 Identities=10% Similarity=0.043 Sum_probs=151.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+++++.-+ . ........ .. +... ...+..++.|.. ...+... .-+...--... T Consensus 3 m~~f~~~~~~~~----~----~~~~~~~~---~~-~~~~---~~~~~~~~~~~~----~~~v~~~----~al~~~~v~~~ 59 (392) T protein:vir:10 3 LPILNFINQTND----P----PEVGSVQS---YF-PDGN---DAQIMESLLGDN----NEWVSAR----AALRNSDLFSI 59 (392) T ss_pred chhhhhhhcccc----c----cccccccc---cc-ccCc---hhhhhhhhcCCC----CceechH----HhhccHHHHHH Confidence 999886554210 0 00000000 00 0000 000111111110 0011000 00011112333 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQ 158 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~ 158 (508) ++.+|+-+-.=| +.+.+... +..+.+--..-....-.+.++...+..|.+++.+..|. |++ .+.+++|+.+-+.. T Consensus 60 i~~ia~~ia~lp--~~~~~~~~-~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~ 136 (392) T protein:vir:10 60 ILQLSSDLAIVK--INAEKKKN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHHhhccCc--eeeccchh-hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 444444443324 33333221 12222111111122334455667888899987777664 554 67778888776543 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) ...+.. ..|+ +. ..+ +.+... ..|. ..+ T Consensus 137 ~~~~~~-----------------~~y~-~~---~~~-~~~~~~-~~~~----------------------~~e------- 164 (392) T protein:vir:10 137 FEYENG-----------------MYYN-IT---FDD-PKIEPI-LQAP----------------------QSD------- 164 (392) T ss_pred cCCCce-----------------EEEE-EE---ecC-ccccee-EEEc----------------------ccc------- Confidence 222221 0111 00 000 000000 0000 000 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCcccce Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDTEQNV 315 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~~~~~ 315 (508) ..+++.+-+ .+...|+|-+.-+...|+....+-.....-|+. +.+.-++ +......+ +....+. .. T Consensus 165 ---iih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~-~~~~~~~---~~ 233 (392) T protein:vir:10 165 ---LIHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-KDKASRS---RS 233 (392) T ss_pred ---EEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH-HHHHHHH---HH Confidence 223332211 123469999988888885555443334445564 4555443 22111000 0000000 01 Q ss_pred Eeee-cCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 316 YVGV-LSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 316 ~~~~-~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) |.+. +.+. +++..++.++......+..+..+...++|....|++|..+|+......+.++..+- ...++.-. T Consensus 234 ~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f---~~~~l~P~ 310 (392) T protein:vir:10 234 FMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM---YASALNRY 310 (392) T ss_pred HhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHH---HHHHHHHH Confidence 1110 0000 12234555555545556777777788899999999999998654433222222111 11222222 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh- Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR- 469 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~- 469 (508) ...++.+|...+ .. .+.++...-+-.|..+.+..+.+++.+|+++..+++.. T Consensus 311 ~~~ie~~l~~~L------------~~---------------~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l 363 (392) T protein:vir:10 311 LRPAISELEYKL------------SD---------------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVL 363 (392) T ss_pred HHHHHHHHHHhc------------cc---------------cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHH Confidence 222333222211 00 11122222233456677777888999999999887643 Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 -NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 -~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-|+...|+.+ .|.- .+..|+|+- T Consensus 364 ~~~g~~p~e~r~------~e~l---------~~~~~Gd~~ 388 (392) T protein:vir:10 364 QEAGYIPKDLPA------PENT---------NKKTTGQSN 388 (392) T ss_pred HhcCCCccccch------hcCC---------CCCCCCCCC Confidence 24554433321 1111 111222222 No 189 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=96.71 E-value=0.00039 Score=39.27 Aligned_cols=374 Identities=10% Similarity=0.043 Sum_probs=151.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||||+++++.-+ . ........ .. +... ...+..++.|.. ...+... .-+...--... T Consensus 3 m~~f~~~~~~~~----~----~~~~~~~~---~~-~~~~---~~~~~~~~~~~~----~~~v~~~----~al~~~~v~~~ 59 (392) T protein:vir:39 3 LPILNFINQTND----P----PEVGSVQS---YF-PDGN---DAQIMESLLGDN----NEWVSAR----AALRNSDLFSI 59 (392) T ss_pred chhhhhhhcccc----c----cccccccc---cc-ccCc---hhhhhhhhcCCC----CceechH----HhhccHHHHHH Confidence 999886554210 0 00000000 00 0000 000111111110 0011000 00011112333 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQ 158 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~ 158 (508) ++.+|+-+-.=| +.+.+... +..+.+--..-....-.+.++...+..|.+++.+..|. |++ .+.+++|+.+-+.. T Consensus 60 i~~ia~~ia~lp--~~~~~~~~-~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~ 136 (392) T protein:vir:39 60 ILQLSSDLAIVK--INAEKKKN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHHhhccCc--eeeccchh-hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 444444443324 33333221 12222111111122334455667888899987777664 554 67778888776543 Q ss_pred EcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCC Q lcl|Aclame:pro 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) Q Consensus 159 ~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~ 238 (508) ...+.. ..|+ +. ..+ +.+... ..|. ..+ T Consensus 137 ~~~~~~-----------------~~y~-~~---~~~-~~~~~~-~~~~----------------------~~e------- 164 (392) T protein:vir:39 137 FEYENG-----------------MYYN-IT---FDD-PKIEPI-LQAP----------------------QSD------- 164 (392) T ss_pred cCCCce-----------------EEEE-EE---ecC-ccccee-EEEc----------------------ccc------- Confidence 222221 0111 00 000 000000 0000 000 Q ss_pred cceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCcccce Q lcl|Aclame:pro 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDTEQNV 315 (508) Q Consensus 239 ~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~~~~~ 315 (508) ..+++.+-+ .+...|+|-+.-+...|+....+-.....-|+. +.+.-++ +......+ +....+. .. T Consensus 165 ---iih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~-~~~~~~~---~~ 233 (392) T protein:vir:39 165 ---LIHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-KDKASRS---RS 233 (392) T ss_pred ---EEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH-HHHHHHH---HH Confidence 223332211 123469999988888885555443334445564 4555443 22111000 0000000 01 Q ss_pred Eeee-cCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 316 YVGV-LSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 316 ~~~~-~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~ 390 (508) |.+. +.+. +++..++.++......+..+..+...++|....|++|..+|+......+.++..+- ...++.-. T Consensus 234 ~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f---~~~~l~P~ 310 (392) T protein:vir:39 234 FMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM---YASALNRY 310 (392) T ss_pred HhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHH---HHHHHHHH Confidence 1110 0000 12234555555545556777777788899999999999998654433222222111 11222222 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh- Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR- 469 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~- 469 (508) ...++.+|...+ .. .+.++...-+-.|..+.+..+.+++.+|+++..+++.. T Consensus 311 ~~~ie~~l~~~L------------~~---------------~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l 363 (392) T protein:vir:39 311 LRPAISELEYKL------------SD---------------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVL 363 (392) T ss_pred HHHHHHHHHHhc------------cc---------------cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHH Confidence 222333222211 00 11122222233456677777888999999999887643 Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 470 -NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 470 -~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .-|+...|+.+ .|.- .+..|+|+- T Consensus 364 ~~~g~~p~e~r~------~e~l---------~~~~~Gd~~ 388 (392) T protein:vir:39 364 QEAGYIPKDLPA------PENT---------NKKTTGQSN 388 (392) T ss_pred HhcCCCccccch------hcCC---------CCCCCCCCC Confidence 24554433321 1111 111222222 No 190 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=96.67 E-value=0.00043 Score=39.07 Aligned_cols=391 Identities=11% Similarity=0.116 Sum_probs=158.7 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHH-HHHhcCCCccccCccCCCccccccccccchH---- Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTD-LDYYSDKLQYIHYQASDGIKKKRLKNTINMA---- 77 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~-~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~---- 77 (508) ||+..|+. - ++.... -.+++.-...+-.| ..-|.| ....|.... ....+..+ T Consensus 1 ~~~~~~~~----~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~g-------~~~~g~~v~-~~~al~~~~V~~ 57 (454) T protein:vir:93 1 MWNLLRRT----R------KNQKSG-----RDVREAGWTSLFQAVAEPFAG-------AWQQGVKAD-PEAVLSFHAVFA 57 (454) T ss_pred CCCccccC----c------cccccc-----ccccchhhhhhhhhhhhhhcc-------hhhcCcccC-hHHhhccHHHHH Confidence 55532221 0 110100 01111101111111 111211 111111100 00112221 Q ss_pred --HHHHHHHHHhhhcCcceEeeCC--c--H-HHHHHHHHHHHh-h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 78 --KTAARRIASVVFNEKAEIHVKD--N--N-EADKFLNDVLED-N---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI- 144 (508) Q Consensus 78 --~~iv~~~A~ll~~e~~~i~~~~--~--~-~~~~~l~~~l~~-n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~- 144 (508) ..|++..|++ |+.+--.+ . . ..+-.+..++.. | ....-.+.++.+.+..|.+++.+..+. |++ T Consensus 58 ~v~~Ia~~iA~l----p~~~~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~ 133 (454) T protein:vir:93 58 CISLISQDIAKM----RLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK 133 (454) T ss_pred HHHHHHHhhccC----ceEEEEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEE Confidence 3344445544 54442111 0 0 111112223322 1 122344555667888899998887764 554 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~ 224 (508) .+-.++|+++-++..++|.+ + +++.... ..+.+. ...| + T Consensus 134 ~L~~i~~~~v~v~~~~~g~~----~-y~~~~~~----------------~~~~~~--~~~~------------~------ 172 (454) T protein:vir:93 134 ELRILDWNRVEPLVADDGEV----F-YRITPDR----------------NCGITE--AVTV------------P------ 172 (454) T ss_pred EEEEEcCcceEEEEcCCCcE----E-EEEEecc----------------ccccce--eEEe------------c------ Confidence 57778888877654333322 0 1110000 000000 0000 0 Q ss_pred ccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcC Q lcl|Aclame:pro 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRF 301 (508) Q Consensus 225 ~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~ 301 (508) ..+ ..+++.+.. .+...|+|.+..+...|.....+-....+-|+. +++.-++ |..+ T Consensus 173 ----~~e----------ViH~k~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l--- 231 (454) T protein:vir:93 173 ----ARE----------VIHDRFNCF----FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI--- 231 (454) T ss_pred ----Ccc----------eEEeccCCC----CCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCC--- Confidence 000 223432211 123468999888887777555444444445565 3444433 2211 Q ss_pred CCCCCccCCcc-cceEeeecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHH Q lcl|Aclame:pro 302 DDEHKPTFDTE-QNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATE 375 (508) Q Consensus 302 ~~~~~~~~~~~-~~~~~~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAte 375 (508) +++....+... ...+.+-+.+. +++..++.++......++.+..+.....|....|++|..++...++. .++++ T Consensus 232 ~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~ 311 (454) T protein:vir:93 232 TEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) T ss_pred CHHHHHHHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHH Confidence 11111001000 01111111100 12234555555444556677777778899999999999998765432 12221 Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 376 VVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKV 455 (508) Q Consensus 376 i~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~ 455 (508) .. +..++.+|..++..+-...+.. +.. .....+.|++++-+..|.++.++...++ T Consensus 312 ~~-------------~~f~~~~l~P~~~~ie~~ln~~-L~~-----------~~~~~~~f~~~~ll~~D~~~r~~~~~~~ 366 (454) T protein:vir:93 312 LE-------------QQYYSQCLQTLIESIELLLDEA-LET-----------GENESTEFDVTTLLRMDSERRMKTLGDA 366 (454) T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHh-hcC-----------CCCcEEEeechhhhccCHHHHHHHHHHH Confidence 11 1112333333333322111110 110 0123577777777788999999999999 Q ss_pred HhCCCCCHHHHHHhcCCCCH-HHHHH--------HHHHHH----HhccCCCCCCcccccCCC--CCCC Q lcl|Aclame:pro 456 LAIGALSKQTFLQRNYGMTD-EQAAE--------ELAKIQ----SEAPTDTFEGGRSAILNG--GDGE 508 (508) Q Consensus 456 ~~~Gi~s~et~l~~~~~~~d-eea~~--------e~~ri~----~E~~~~~~~~~~~~~~~~--~~g~ 508 (508) +..|+|+.-+++... |+++ +..++ -+..+. .+++....+.....+... .||. T Consensus 367 ~~~G~~T~NE~R~~~-gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) T protein:vir:93 367 VKNTLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) T ss_pred HhCCCcCHHHHHHHh-CCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccCCCCCCCCCCCCCC Confidence 999999999988653 2221 00000 011111 111111111111111111 1111 No 191 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=96.63 E-value=0.00046 Score=38.90 Aligned_cols=393 Identities=10% Similarity=0.030 Sum_probs=153.8 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC--CCccccccccccchHHHHHHHHHHhhhcCcceE Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS--DGIKKKRLKNTINMAKTAARRIASVVFNEKAEI 95 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i 95 (508) |- +.+-++-.+|...+..-.-...|.+.+. ..... ...-.........--...|+.+|+-+-.=|+.+ T Consensus 1 ~~--------~~~~~~~~~p~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l 70 (518) T protein:vir:10 1 ML--------LANGQTLSAPAMAELSPQMQDSYYYAPA--VGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKC 70 (518) T ss_pred Cc--------ccCceeecCchhhhhhhhhhcccccccc--cceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEE Confidence 11 1111111122111111111112222111 00000 000000000000111233333333332223333 Q ss_pred eeC--Cc--HHHHHHHHHHHHh-hh---HHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeE Q lcl|Aclame:pro 96 HVK--DN--NEADKFLNDVLED-ND---FKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDIS 165 (508) Q Consensus 96 ~~~--~~--~~~~~~l~~~l~~-n~---f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~ 165 (508) --. +. ...+..+..++.. |. ...-.+.++...+..|.+++.+..+. |++ .+..++|+.+-+.....+.. T Consensus 71 ~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~- 149 (518) T protein:vir:10 71 MFTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGR- 149 (518) T ss_pred EEEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCE- Confidence 111 10 0111122233332 11 12234445666777898888777764 554 57777787776542211111 Q ss_pred EEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEe Q lcl|Aclame:pro 166 EAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYF 245 (508) Q Consensus 166 ~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~ 245 (508) ++ ++.....+.+. ..+ .++. .+ ..++ T Consensus 150 -----------------~~----y~~~~~~~~~~---------------~~~---~~~~-----~e----------ViHi 175 (518) T protein:vir:10 150 -----------------YE----YYFQAGAGVGT---------------QLV---SFAD-----DE----------VVPI 175 (518) T ss_pred -----------------EE----EEEEecCCccc---------------eEE---EecC-----Cc----------EEEe Confidence 10 00000000000 000 0000 00 2334 Q ss_pred cCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCCCCCccCCcc-cceEee--- Q lcl|Aclame:pro 246 KTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVG--- 318 (508) Q Consensus 246 ~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~--- 318 (508) +.+-++ +...|+|.+.-+...|.....+-....+-|+. +.+..++ |..+ +++....+... ...|.+ T Consensus 176 r~~s~d----g~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l---s~e~~~~~k~~~~~~~~G~~n 248 (518) T protein:vir:10 176 RFFNPD----GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL---SEAAQQRLREQFDRAHSGSSN 248 (518) T ss_pred cCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC---CHHHHHHHHHHHHHHhcCccc Confidence 433222 22358898887777776666555555555665 4555444 1111 11111001000 001111 Q ss_pred ----ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 319 ----VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 319 ----~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~ 393 (508) +-. +++..++.++......++.+..+.....|....|++|..+++...+. .++++....+ ...++.-..+. T Consensus 249 ag~v~vL--~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~~f--~~~tL~P~l~~ 324 (518) T protein:vir:10 249 TGKTMVV--EEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF--YRDTMAIPIAR 324 (518) T ss_pred cCcceEc--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH--HHHHHHHHHHH Confidence 001 12223555554444456777777778899999999999998765432 2222211111 11222223333 Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--C Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--Y 471 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~ 471 (508) ++..|...+ .... ...+.+.|+.+.-+..|.++.++...+++.+|+|+.-+++... + T Consensus 325 ie~~ln~~L------------~~~~---------~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~ 383 (518) T protein:vir:10 325 IQSAMDKYV------------GQYW---------VRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLP 383 (518) T ss_pred HHHHHHHhh------------cccc---------cCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Confidence 333332221 1000 0123466666676778999999999999999999999988653 2 Q ss_pred CCCHHHHHHH-----HHHHH--------HhccCCCCCCcccccCCCCC----CC Q lcl|Aclame:pro 472 GMTDEQAAEE-----LAKIQ--------SEAPTDTFEGGRSAILNGGD----GE 508 (508) Q Consensus 472 ~~~deea~~e-----~~ri~--------~E~~~~~~~~~~~~~~~~~~----g~ 508 (508) -++++...+. +..+. .++++ .++.++....++.| +. T Consensus 384 pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 436 (518) T protein:vir:10 384 RSDDPKADELYANSALQPLGATPDGAVEGEEAP-APKRPASTPVASLDQSPPTS 436 (518) T ss_pred CCCCCCCCeeeecccceecccccccccCCCCCC-CCCCCCcccccccccccccc Confidence 2322222221 11110 00000 01111111111110 00 No 192 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=96.57 E-value=0.0005 Score=38.68 Aligned_cols=434 Identities=12% Similarity=0.077 Sum_probs=176.9 Q ss_pred HHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCC--ccccccccccchHHHHHHHHHHhh Q lcl|Aclame:pro 11 FWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDG--IKKKRLKNTINMAKTAARRIASVV 88 (508) Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~--~~~~~~~~~~n~~~~iv~~~A~ll 88 (508) ++.-..+++. ..++..-...|+.++.--.|.+-....++ ...+..+.-=.-+...++.+|+-| T Consensus 1 m~~~~~~l~~---------------k~~R~~~e~~w~e~a~~~lP~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l 65 (514) T protein:vir:80 1 MRQQASAMWA---------------EYRDSTAIRKAEDFAKFTIASLMVDPLDKTHQAEVVEYDFQSAGAFLVNNLTAKL 65 (514) T ss_pred CccchHHHHH---------------HhhcchHHHHHHHHHHHhcccccCCCCCCcccccccccccchhHHHHHHHHHHHH Confidence 1111111110 11233345667776654444221111111 111111111123445555555555 Q ss_pred hcC--c-----ceEeeCCc------------HHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCC Q lcl|Aclame:pro 89 FNE--K-----AEIHVKDN------------NEADKF-------LNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN 142 (508) Q Consensus 89 ~~e--~-----~~i~~~~~------------~~~~~~-------l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~ 142 (508) ++- | .++++++. ...+++ +...+..++|...+.++..+....|.+.+ |.+++ T Consensus 66 ~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~~~~ 143 (514) T protein:vir:80 66 ALTLFPPGRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALF--YREPG 143 (514) T ss_pred HhhhcCCCCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--EEecC Confidence 432 1 23443321 112333 34456678899999999999999998764 45655 Q ss_pred eeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEee------------------cCCcEEEEEEEEEEEeCCceEEEEEE Q lcl|Aclame:pro 143 HIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRTE------------------SNQTKYYTLLEFHQWQDNGSYQITNE 203 (508) Q Consensus 143 ~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~~------------------~~~~~~yt~lE~h~~~~~g~~~I~~~ 203 (508) .-.+..+|-.+++ +..| +|++..+++..++.... ...-.+|+++++.. .+++++. . T Consensus 144 ~~~~~~~pl~~y~-v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~-~~~~~~~---s 218 (514) T protein:vir:80 144 TGKMLVWTMQSYT-VRRTSHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYTVIEWQP-TPNGKRC---A 218 (514) T ss_pred CCcEEEEEcCeEE-EeeCCCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEEEEEeec-CCCCeEE---E Confidence 4456677777766 4445 56666555443322100 01113455554432 1122221 2 Q ss_pred EEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 LYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW 283 (508) Q Consensus 204 ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~ 283 (508) +|..-+...+|. + ..|. ++ +.| |..++ =+...++.+|+|--..+.+-++.|+..--.... T Consensus 219 v~~e~~g~~i~~-----e-s~y~-------~~--e~P-~i~~R----w~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~ 278 (514) T protein:vir:80 219 VWHELEGKRVGP-----E-SSYP-------AH--LCP-YVPVA----WNVPDGEHYGRGYVEEYSGDFARLSILSERLGL 278 (514) T ss_pred EEEeccceeecc-----c-Cccc-------cc--cCC-eeeee----eEecCCCCcccchHHHHHHHHHHHHHHHHHHHH Confidence 222212111111 0 0010 01 112 22111 123346789999999999999999975444433 Q ss_pred H-HHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeecc--CCHHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 284 E-IRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTP--IRTVQYKDAIDHFIKEFEVQIGLST 360 (508) Q Consensus 284 e-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--ir~e~~~~~l~~~l~~i~~~~g~s~ 360 (508) . ....++...|+++.+. .+.. ..+.....++ ... ...+..++.. .+.....+.++.+.+.|....=+.. T Consensus 279 ~~~~a~~~~~~v~~~g~~-~~~~--l~~~~~g~~v--~g~---~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aFml~~ 350 (514) T protein:vir:80 279 YEFEALSLLNLVDEAKGG-AVDD--YRDAETGDFV--PGQ---VGSVASYERGDYNKIAQASASVESIVMRLNRAFMYTG 350 (514) T ss_pred HHHHhcCCCceeCccccc-chhh--hcccCCceee--cCC---CccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhc Confidence 3 3456666666553221 0000 0111111121 111 1224444322 2344445666666666643321211 Q ss_pred hhccccccccchHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhh--hccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 361 GTFSYSNDGVKTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANA--GALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 361 ~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) .. ..+...|||||....+...+...-.- +.-..-|..|+.-++.+... .+..+. . ++..+.+++ T Consensus 351 -~~--rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~--------~--p~~l~~~~~ 417 (514) T protein:vir:80 351 -QV--RDAERVTVEEIRTVAEEAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLG--------I--AQGVYRPSI 417 (514) T ss_pred -cC--CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--------C--Cchhhccee Confidence 11 12234699999999998888777633 22333445565555554421 111111 0 111122222 Q ss_pred CCCc-cCCHHHHHH---HHHHHHhC--CC-------CCHHHHH---HhcCCCCH-------HHHHHHHHHHHHhccCCCC Q lcl|Aclame:pro 438 DDGV-FVNKDKQLE---EDAKVLAI--GA-------LSKQTFL---QRNYGMTD-------EQAAEELAKIQSEAPTDTF 494 (508) Q Consensus 438 ~d~i-~~d~~~e~~---~~~~~~~~--Gi-------~s~et~l---~~~~~~~d-------eea~~e~~ri~~E~~~~~~ 494 (508) --++ ...+..+++ +..+.++. +. +....++ ....|++- |+++...+|.++.+++ +. T Consensus 418 vs~la~l~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~-~~ 496 (514) T protein:vir:80 418 ITGIPALTRNIETANILRATQEASAIVPALVQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQ-QL 496 (514) T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHH-HH Confidence 1121 111222222 22222211 11 1122222 22345542 3333333332221111 10 Q ss_pred CCcccccCCCCCCC Q lcl|Aclame:pro 495 EGGRSAILNGGDGE 508 (508) Q Consensus 495 ~~~~~~~~~~~~g~ 508 (508) ...+....++...= T Consensus 497 ~~~~~~~~~~~~~~ 510 (514) T protein:vir:80 497 DVASGALAAETSAG 510 (514) T ss_pred HHHHHHHHHhhhcc Confidence 11111111110000 No 193 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=96.57 E-value=0.0005 Score=38.68 Aligned_cols=417 Identities=8% Similarity=-0.019 Sum_probs=153.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcccc-ccCCHH------HHHHHHHHHHHhcCCCccccCccCCCccc-ccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPR-ISIDPD------EYVRIQTDLDYYSDKLQYIHYQASDGIKK-KRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~------~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~-~~~~~ 72 (508) ||||++++..++... + ++++....... ...+.. -..++. .+..|....+... .+... ..... T Consensus 1 M~~~~~l~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~--~g~~v~~~~a~ 70 (466) T protein:vir:81 1 MRLIDRLLSTRGAAP-R----MSIDDYAQMLNEFAFNGIGYGFGGGVPRIQ---QTLAGPSTELAPD--TFVGLATQAYQ 70 (466) T ss_pred CchhHHHhhccCccc-c----cchhhhhhhhhhhhccccccccccccHHHH---HhhccccccccCc--cccccchhhhh Confidence 999999998765321 1 12111110000 000000 000111 2222221111100 11111 11111 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCcH----HHHHHHHHHHHh-h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDNN----EADKFLNDVLED-N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH 143 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~~----~~~~~l~~~l~~-n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~ 143 (508) .+.-....++.+|+-+-.=|+.+.-.++. ..+..+-.++.. | ....-.+.++..++..|.+++.+..++ +. T Consensus 71 ~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~ 150 (466) T protein:vir:81 71 ANGPVFACMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVR 150 (466) T ss_pred ccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccc Confidence 22333444555555554445555422211 011122233332 1 222334455667788898888776653 21 Q ss_pred ---------eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccC Q lcl|Aclame:pro 144 ---------IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVG 214 (508) Q Consensus 144 ---------~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG 214 (508) +.+..++|+++.+....++.. +..+.++. ++. .. .... T Consensus 151 l~~~~~g~~~~l~~l~~~~v~~~~~~~~~~-------------------~~~y~~~~---~~~------~~-----~~~~ 197 (466) T protein:vir:81 151 MRPDWVDVVVEERMVRGGRGELGGGQLGWR-------------------KVGYLYTE---GGR------QS-----GNES 197 (466) T ss_pred cccccCcceeEEEEecCcceEEEEcCCCce-------------------EEEEEEEe---cCc------cc-----ccce Confidence 223334444443321111100 00000000 000 00 0000 Q ss_pred ccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceee Q lcl|Aclame:pro 215 NQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIA 293 (508) Q Consensus 215 ~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~ 293 (508) ..++.. + ..++|.. .|. .+...|+|.+.-+...|......-.....-|+. +++.-+ T Consensus 198 ~~~~~~----------d----------viHir~~-~~~--~d~~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng~~p~gi 254 (466) T protein:vir:81 198 VGFLAE----------D----------VVHFAPI-PDP--LASYRGMSWLTPILREIRADQAMSKHQAKFFDNGATVNLV 254 (466) T ss_pred eeeccc----------c----------EEEEcCC-CCc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceE Confidence 000000 0 1233311 011 123358998888887775544333333444564 344443 Q ss_pred ec-hHHhcCCCCCCccCCcc-cceEee-------ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcc Q lcl|Aclame:pro 294 VQ-PGMLRFDDEHKPTFDTE-QNVYVG-------VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) Q Consensus 294 v~-~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 364 (508) +. +..+ +++....+... ...|.+ +-. +++..++.++......+..+..+...++|....|++|..+| T Consensus 255 l~~~~~l--~~e~~~~~~~~~~~~~~g~~n~g~~~vl--~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG 330 (466) T protein:vir:81 255 IKHNPMA--DPAAVKKWADEVNSKHAGVDNAWKNLNL--YPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVG 330 (466) T ss_pred EecCCCC--CHHHHHHHHHHHHHHhcCccccccceEc--CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcc Confidence 31 0011 11111111000 011111 111 12234565665555566777778888999999999999998 Q ss_pred cccc-ccchHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCcc Q lcl|Aclame:pro 365 YSND-GVKTATEVVSNNSM-TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVF 442 (508) Q Consensus 365 ~~~~-~~~TAtei~~~~~~-l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~ 442 (508) ...+ +..|...+...... ...++.-+...++.+|...+ .... ......+.++...-+- T Consensus 331 ~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L------------~~~~--------~~~~~~~~f~~~~llr 390 (466) T protein:vir:81 331 LSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVM------------PDMG--------PDVRLWYDADDVPFLR 390 (466) T ss_pred cccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCcc--------cCcceEEEecchhhhc Confidence 7643 22332222222211 12333334444444333221 1100 0011233344344344 Q ss_pred CCHHHHHHH-------HHHHHhCCCCCHHHHHHhcCCCCHH----HHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 443 VNKDKQLEE-------DAKVLAIGALSKQTFLQRNYGMTDE----QAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 443 ~d~~~e~~~-------~~~~~~~Gi~s~et~l~~~~~~~de----ea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .|..+..+. ...++.+|+ ++.+.+....+-+.. .-..-++.+...+......+......++.+|+ T Consensus 391 ~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 391 EDEKDAADIQKVRAETINTLITAGY-EPESVVAAVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDNGN 466 (466) T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCC-ChhhccccccCCccccccCCCcchhhhcccccccccCCCCcccCCCCcCCC Confidence 565444332 344566775 666655433221110 00000111111111111111111122334444 No 194 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=96.38 E-value=0.00068 Score=37.95 Aligned_cols=397 Identities=9% Similarity=0.068 Sum_probs=163.8 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--HHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--KTA 80 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~~i 80 (508) |.+.+.+.+.+..... ..++.... ..-+.+++.. -|..|..+... ....+... ..+..+ -.. T Consensus 1 ~~~~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~-----~~~~~~g~~~~--~g~~v~~~------~al~~~~V~~~ 64 (434) T protein:vir:43 1 MSKSLGKVLSSATSAP--RSSLFGWG-GKTIRLTDGA-----FWSQFLGRESS--SGKKVTVD------KAMKLSAVWAC 64 (434) T ss_pred Cccchhhhhhhccccc--chhhhccc-ccccccCchH-----HHHHHhcCCcc--CCceechh------hhhccHHHHHH Confidence 5555555443322221 11111111 1222222211 23333322111 11111100 012221 123 Q ss_pred HHHHHHhhhcCcceEe-eC-CcH--H-HHHHHHHHHH--hhh---HHHHHHHHHHHHhhcCCEEEEEEEeCCee-EEEEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIH-VK-DNN--E-ADKFLNDVLE--DND---FKNKFEEALEKGVALGGFAMRPYIDGNHI-KIAWV 149 (508) Q Consensus 81 v~~~A~ll~~e~~~i~-~~-~~~--~-~~~~l~~~l~--~n~---f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~i~~v 149 (508) ++.+|+-+-.=|+.+- .+ +.. . .+-.+..+|. -|. -..-.+.++...+-.|.+++.+..++|++ .+..+ T Consensus 65 i~~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~~~~L~~l 144 (434) T protein:vir:43 65 VRLISTSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGRPAALDFL 144 (434) T ss_pred HHHHHHhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEE Confidence 3444444333344441 11 110 0 1112334442 122 22344455667788899888777777765 56678 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-|...+++.+ +|.. . ...|. .+. ++. T Consensus 145 ~p~~v~~~~~~~g~~------------------~y~~----~-~~~g~------------------~~~---~~~----- 175 (434) T protein:vir:43 145 LPSRVDLECDENGRL------------------KYFY----T-TKKGA------------------RRE---IER----- 175 (434) T ss_pred cCcceEEEEcCCCeE------------------EEEE----E-ecCce------------------EEE---Ecc----- Confidence 888876643222221 1100 0 00110 000 000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHK 306 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~ 306 (508) .+ ..+++.+-. +...|+|.+.-+...|......-....+-|+.| ++..++ |..+ +++.. T Consensus 176 ~e----------Vih~~~~~~-----dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l---~~e~~ 237 (434) T protein:vir:43 176 TN----------MLHIPAFTL-----DGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRIL---QPAQR 237 (434) T ss_pred cc----------EEEecCcCC-----CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCC---CHHHH Confidence 00 123332211 123588888877776665553333333445543 444333 2111 11111 Q ss_pred ccCCcccceEe-eecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHH Q lcl|Aclame:pro 307 PTFDTEQNVYV-GVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNS 381 (508) Q Consensus 307 ~~~~~~~~~~~-~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~ 381 (508) ..+....+.+. +-+.+. +++..++.++......+..+..+...++|....|++|..++....+..+.+.+..... T Consensus 238 ~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~ 317 (434) T protein:vir:43 238 EEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQML 317 (434) T ss_pred HHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHH Confidence 11111000011 001000 1222355555444555677777778889999999999998876544322222222221 Q ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 382 MT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGA 460 (508) Q Consensus 382 ~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi 460 (508) .. ..++.-....++.+|..-+ +... ....+.+.|++++-+..|..+.++...+++..|+ T Consensus 318 ~f~~~~L~P~~~~ie~~ln~kL------------~~~~--------~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~ 377 (434) T protein:vir:43 318 AFLTFSISSITNQIQQCVNKRL------------LTAP--------ERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGF 377 (434) T ss_pred HHHHHHHHHHHHHHHHHHHhhc------------CChh--------hhcCceEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 11 1223333333333333211 1100 0012456677777677899999999999999999 Q ss_pred CCHHHHHHhcCCCCH-HHHHH--------HHHHHHHhccCC------CCCCcccccCC Q lcl|Aclame:pro 461 LSKQTFLQRNYGMTD-EQAAE--------ELAKIQSEAPTD------TFEGGRSAILN 503 (508) Q Consensus 461 ~s~et~l~~~~~~~d-eea~~--------e~~ri~~E~~~~------~~~~~~~~~~~ 503 (508) |+.-+++... |+++ +..++ -++.+.+.+... ..+.++-.+.. T Consensus 378 ~T~NE~R~~~-gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 378 MTRNEGRRKE-NLPELPGGDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred cCHHHHHHHh-CCCCCCCCCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 9999988752 2221 00100 011111111100 00011111111 No 195 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=96.38 E-value=0.00068 Score=37.93 Aligned_cols=411 Identities=13% Similarity=0.118 Sum_probs=158.2 Q ss_pred hHHHHHHHHHHHHHh---hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHH Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAA---TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKT 79 (508) Q Consensus 3 ~~~~ik~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~ 79 (508) |=+|+--.+...... -+...+|..... .+..+ |-+.|..|+ .+..+.+.. ....+.+-.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~----glg~~---r~~~~~~~g--~~~~~~~~~-----l~~~Yr~~~ia~~ 66 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTM----GLDNK---RHSAWCEYG--FPELVTYEN-----LYSLYRRGGIAHG 66 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHh----cCCcc---cchhhhhcC--CcccCCHHH-----HHHHHhcCchhHH Confidence 222211111000000 000111111110 00000 111232331 111111000 0011123368899 Q ss_pred HHHHHHHhhhcCcceEeeCCcH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCC Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVKDNN-------EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRAD 152 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~~~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~ 152 (508) ||+..|+-+..+-+.|.-.++. .....+++++. .+++..+.++...+.-+|++++.+-+++++..- T Consensus 67 iVd~~~d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~-~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~------ 139 (449) T protein:vir:10 67 AVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWN------ 139 (449) T ss_pred HHHhhhhhhhhcCcccccCccccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCcEEEEEEecCCCCCC------ Confidence 9999999887665555422111 11233455544 478888999999888888888777675543211 Q ss_pred eEEEEEEcCCCeEEEEEEEEEEEeec-----CCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 153 QFYPLQSNTNDISEAAIASRTQRTES-----NQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 153 ~~~Pi~~d~~~~~~~~f~~~~~~~~~-----~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) -|+. ..+++..+..+++....-. -....|-.=+ .|+|...+. |... T Consensus 140 --~Pl~-~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P~--------~y~v~~~~~--------g~~~---------- 190 (449) T protein:vir:10 140 --LPAT-KGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPK--------LWKYTERLP--------NGSS---------- 190 (449) T ss_pred --cccc-cCcceeeEEeeccccCChhhhhcCCCCCCCCCce--------EEEEeeecc--------CCCc---------- Confidence 1331 1223333322222110000 0000000001 111111100 0000 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHH-----HHHHh----ccceeee--ch Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFI-----WEIRL----GQKHIAV--QP 296 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~-----~e~~~----~~~~i~v--~~ 296 (508) ..+.++ -.|. +.+.-.| .-|+|.+..+-+-+-.++.+-.... +..+- ...++-+ -. T Consensus 191 --~~~~iH-~SRl-~~~~~~~---------~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~ 257 (449) T protein:vir:10 191 --RRVDIH-PDRV-FILGDYS---------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA 257 (449) T ss_pred --cceeec-ccee-EeecCCC---------CCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhh Confidence 000000 0111 1110001 1166776666555544444321111 11110 0001100 01 Q ss_pred HHhcCCCCCCc-cCCc-----ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchh-ccccccc Q lcl|Aclame:pro 297 GMLRFDDEHKP-TFDT-----EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDG 369 (508) Q Consensus 297 ~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~ 369 (508) .++..+-+... .+.. ++... .+..+.+ ..+++++-. .......++...+.+...+|++..- ||...+| T Consensus 258 ~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~i~~~--~d~~~~~~~--~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~g 332 (449) T protein:vir:10 258 SLYGVSIDELQDKFNEVAGEINRGND-VLMTTQG--ATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAE 332 (449) T ss_pred HHhhCCchHHHHHHHHHHHHHhccch-heeecCC--cceEEEecc--cCChhHHHHHHHHHHHHHhCCCeeeeeccCccc Confidence 11111111000 0100 00000 1111211 125555443 3455567777888888888887664 5555555 Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 370 VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 370 ~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) .. +|+ ..+-.|..+...|..++..|+.|+..++...- +.. +.+++|.|+.--..+..+.+ T Consensus 333 ln-st~---D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~-------------g~~---~~d~~i~f~pL~~~t~kEkA 392 (449) T protein:vir:10 333 RS-STE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELKI-------------IDA---VAKKAVIWDDLNEQTGTEKL 392 (449) T ss_pred cc-cch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-------------CCC---CCceeEEeCCCCCCCHHHHH Confidence 54 343 23335677777777788899998887654421 111 23799999987777766665 Q ss_pred HHHHHHHhCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 450 EEDAKVLAIGALSKQTFLQR--NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 450 ~~~~~~~~~Gi~s~et~l~~--~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +...+...+ ..+++.. ..=++.+|+.+.+. .+.+...+.+...+.+.+...| T Consensus 393 ei~k~~A~a----~~~~~~ag~~~~~~~~EiR~~~~---~~~~~~~~~~~e~~de~~~~~d 446 (449) T protein:vir:10 393 TNAKTMGEI----NQTMLGSGDNPAFSREEIRTAAG---YDNDDEEPLGEEDGDEEDKATD 446 (449) T ss_pred HHHHHHHHH----HHHHHHccccCCcCHHHHHHHhc---ccCCCCCCCCCCCCccccccCC Confidence 433222110 1111110 11235555544331 1211111112222222222223 No 196 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=96.36 E-value=0.0007 Score=37.89 Aligned_cols=383 Identities=13% Similarity=0.105 Sum_probs=164.0 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH----HHHHHHHHHhhhcCcc Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA----KTAARRIASVVFNEKA 93 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~----~~iv~~~A~ll~~e~~ 93 (508) |+..+.+++-. ..+.+++. .+. .|..+.+... .+... .-+...-. ..|++..|++ |+ T Consensus 1 m~f~~~~~~~~--~~~~~~~~---~~~---~~~g~~~~~~---~v~~~----~al~~~~v~~~i~~ia~~ia~l----p~ 61 (409) T protein:vir:10 1 MLFRKGFKNQS--QEISIDDK---KIL---EWLGINPSET---YVNGK----SCLKQATVFGCIRILSDNISKL----PI 61 (409) T ss_pred CcccccccCcC--CCCCCChH---HHH---HHhcCCcCcc---eechh----hhhccHHHHHHHHHHHHhhhhC----ce Confidence 22222222211 11233321 112 2332222111 11100 00111111 3445555543 44 Q ss_pred eEeeCCcH---HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEEEcCCC Q lcl|Aclame:pro 94 EIHVKDNN---EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYPLQSNTND 163 (508) Q Consensus 94 ~i~~~~~~---~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~Pi~~d~~~ 163 (508) .+--..+. ..+.-+..+|.. | ....-.+.++...+..|.+++.+..+. |. +.+..++|+.+-++..+.+. T Consensus 62 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~ 141 (409) T protein:vir:10 62 KIYQKKDGIKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGL 141 (409) T ss_pred EEEEecCCeeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCcc Confidence 33111111 011122333321 1 222345556777888899988887765 44 35777888887665322221 Q ss_pred eEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEE Q lcl|Aclame:pro 164 ISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFA 243 (508) Q Consensus 164 ~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~ 243 (508) ... .....|.. + ...| ... .++. . -.. T Consensus 142 ~~~------------~~~~~y~~----~-~~~g------------------~~~---~~~~-----~----------evi 168 (409) T protein:vir:10 142 LNS------------ENNVWYLY----T-DDLG------------------QRH---KFMS-----D----------EIL 168 (409) T ss_pred ccc------------cceEEEEE----E-eCCc------------------eeE---Eecc-----c----------cEE Confidence 100 00001100 0 0011 000 0000 0 023 Q ss_pred EecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeeec--hHHhcCCCCCCccCCcc-cceEeee Q lcl|Aclame:pro 244 YFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQ--PGMLRFDDEHKPTFDTE-QNVYVGV 319 (508) Q Consensus 244 ~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~--~~~~~~~~~~~~~~~~~-~~~~~~~ 319 (508) +++.+-+ +...|+|.+.-+...|+.....-....+-|+. +++.-++. ..+ +++....+... .+.+.+. T Consensus 169 h~r~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l---~~e~~~~~~~~~~~~~~g~ 240 (409) T protein:vir:10 169 HFKGLTA-----DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDL---NPEAEEVFKENFERMSSGL 240 (409) T ss_pred EecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCC---CHHHHHHHHHHHHHHhccc Confidence 3443222 23469999888888777755544444455665 44554431 111 11111100000 0111111 Q ss_pred c-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 320 L-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTM 393 (508) Q Consensus 320 ~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~ 393 (508) . .+ -+++..++.++......+..+..+...++|....|++|..++...++. .++++.. ... T Consensus 241 ~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~-------------~~f 307 (409) T protein:vir:10 241 KNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQN-------------REF 307 (409) T ss_pred cccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHH-------------HHH Confidence 1 00 012234555555555566777778888899999999999998765442 2222211 112 Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCC Q lcl|Aclame:pro 394 VEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGM 473 (508) Q Consensus 394 ~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~ 473 (508) ++.+|..++..|....+.. ++... .....+.+.|++++-...|..+.++...+++.+|+|+.-+++... |+ T Consensus 308 ~~~~l~P~~~~ie~~ln~k-L~~~~-------~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~l-gl 378 (409) T protein:vir:10 308 YIDTLQSILNMYELEINYK-LFLIS-------EIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELE-ED 378 (409) T ss_pred HHHHHHHHHHHHHHHHHHh-hcCch-------hccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CC Confidence 3334444444432221111 11110 011234577778777778999999999999999999999988653 44 Q ss_pred CH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 474 TD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 474 ~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+ +...+-+. ... ...-+..+.-...+|| T Consensus 379 ~p~~ggD~~~~--~~n----~~~~~~~~~~~~kgGe 408 (409) T protein:vir:10 379 EPLEGGDVLLI--NGN----MIPVKMAGEQYSKGGE 408 (409) T ss_pred CCCCCcCeeee--ccC----ccchhhccccccccCC Confidence 32 11111000 000 0000111111123344 No 197 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=96.30 E-value=0.00076 Score=37.68 Aligned_cols=371 Identities=12% Similarity=0.149 Sum_probs=157.6 Q ss_pred HHHhcCCCcccc--CccCC------------------------------------Ccc--ccccccccchH--HHHHHHH Q lcl|Aclame:pro 47 LDYYSDKLQYIH--YQASD------------------------------------GIK--KKRLKNTINMA--KTAARRI 84 (508) Q Consensus 47 ~~~Y~g~~~~~~--~~~~~------------------------------------~~~--~~~~~~~~n~~--~~iv~~~ 84 (508) -+||.-+..++. .++.+ +.. .......+..+ -..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 122222111000 00000 000 00000011111 0123333 Q ss_pred HHhhhcCcceEeeCCcHHHHHHHHHHHH--hhhH---HHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEE Q lcl|Aclame:pro 85 ASVVFNEKAEIHVKDNNEADKFLNDVLE--DNDF---KNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPL 157 (508) Q Consensus 85 A~ll~~e~~~i~~~~~~~~~~~l~~~l~--~n~f---~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi 157 (508) |+-+-.=|+.+.-++.......+-.+|. -|.+ ..-.+.++...+..|.+++.+..+. |++ .+..++|+++-+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:94 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 3333333555432221111122233332 1211 2334455667788899988877764 554 6778889888765 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) ..+++++ +|+ .+. ....+. .+. ..|.. .+ T Consensus 161 ~d~~g~~------------------~~~-~~~--~~~~~~-~~~-~~~~~----------------------~d------ 189 (441) T protein:vir:94 161 SDARGRL------------------YYF-HQR--IDSNGN-NIE-RNVKF----------------------ED------ 189 (441) T ss_pred ECCCccE------------------EEE-EEE--eccCCc-eeE-EEEcc----------------------cc------ Confidence 3233322 111 000 000000 000 01100 00 Q ss_pred CcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH-HHHh-ccceeee--chHHhcCCCCCCccCCc-c Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW-EIRL-GQKHIAV--QPGMLRFDDEHKPTFDT-E 312 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~-~ 312 (508) +.+++.+- .+...|+|.+.-+...|+.. .....+.. -|+. +.+..++ |..+. +++....+.. - T Consensus 190 ----vih~k~~~-----~dg~~G~spl~~~~~~i~~~-~~~~~~~~~~f~ng~~p~gil~~~~~~~--~~e~~e~~r~~~ 257 (441) T protein:vir:94 190 ----MLDIKFYS-----LDGINGLSLLDTLSRTIESD-NNGKDFLNNFLRNGTHAGGILKMKGVLD--NKKARDRAREEF 257 (441) T ss_pred ----EEEeccCC-----CCCccccCHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcEEEEcCCCCC--CHHHHHHHHHHH Confidence 12333211 11236899888888777643 34444444 3555 3455444 22111 1111100000 0 Q ss_pred cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhH Q lcl|Aclame:pro 313 QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTR 387 (508) Q Consensus 313 ~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~ 387 (508) ...|.+.. .+ -+++..++.++......++.+..+...++|....|++|..++.+..+. +.++....+ ..++ T Consensus 258 ~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-s~~q~~~~~---~~tl 333 (441) T protein:vir:94 258 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDY---LSTL 333 (441) T ss_pred HHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHH---HHHH Confidence 01111110 00 012223555555555556777777888899999999999998654432 222222211 1233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 388 SSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFL 467 (508) Q Consensus 388 ~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l 467 (508) .-..+.++.+|...+ ... ...+.+.|+++.-...|.++.++...+++.+|+|+..+++ T Consensus 334 ~P~~~~ie~eln~kl------------~~~----------~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R 391 (441) T protein:vir:94 334 KPYITCVCAELNFKF------------NDE----------YVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIR 391 (441) T ss_pred HHHHHHHHHHHhhhc------------ccc----------ccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 333333333332211 110 1134677777777778999999999999999999999988 Q ss_pred HhcCCCCH---HHH-HHH-------HHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 468 QRNYGMTD---EQA-AEE-------LAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 468 ~~~~~~~d---eea-~~e-------~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ... |+++ -+. .-. ++.+ .+.....+......+.+|.++| T Consensus 392 ~~~-gl~Pi~ggd~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 392 QRD-GLAPIPGGNGSIHRVDLNHVNIELV-DEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHh-CCCCCCCCCcceEeecccccccccc-cccccccccccccccCCCCCCC Confidence 753 3322 110 000 0000 1111111111122233444444 No 198 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=96.30 E-value=0.00076 Score=37.68 Aligned_cols=371 Identities=12% Similarity=0.149 Sum_probs=157.6 Q ss_pred HHHhcCCCcccc--CccCC------------------------------------Ccc--ccccccccchH--HHHHHHH Q lcl|Aclame:pro 47 LDYYSDKLQYIH--YQASD------------------------------------GIK--KKRLKNTINMA--KTAARRI 84 (508) Q Consensus 47 ~~~Y~g~~~~~~--~~~~~------------------------------------~~~--~~~~~~~~n~~--~~iv~~~ 84 (508) -+||.-+..++. .++.+ +.. .......+..+ -..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 122222111000 00000 000 00000011111 0123333 Q ss_pred HHhhhcCcceEeeCCcHHHHHHHHHHHH--hhhH---HHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEE Q lcl|Aclame:pro 85 ASVVFNEKAEIHVKDNNEADKFLNDVLE--DNDF---KNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPL 157 (508) Q Consensus 85 A~ll~~e~~~i~~~~~~~~~~~l~~~l~--~n~f---~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi 157 (508) |+-+-.=|+.+.-++.......+-.+|. -|.+ ..-.+.++...+..|.+++.+..+. |++ .+..++|+++-+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:79 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 3333333555432221111122233332 1211 2334455667788899988877764 554 6778889888765 Q ss_pred EEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCC Q lcl|Aclame:pro 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) Q Consensus 158 ~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~ 237 (508) ..+++++ +|+ .+. ....+. .+. ..|.. .+ T Consensus 161 ~d~~g~~------------------~~~-~~~--~~~~~~-~~~-~~~~~----------------------~d------ 189 (441) T protein:vir:79 161 SDARGRL------------------YYF-HQR--IDSNGN-NIE-RNVKF----------------------ED------ 189 (441) T ss_pred ECCCccE------------------EEE-EEE--eccCCc-eeE-EEEcc----------------------cc------ Confidence 3233322 111 000 000000 000 01100 00 Q ss_pred CcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH-HHHh-ccceeee--chHHhcCCCCCCccCCc-c Q lcl|Aclame:pro 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW-EIRL-GQKHIAV--QPGMLRFDDEHKPTFDT-E 312 (508) Q Consensus 238 ~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v--~~~~~~~~~~~~~~~~~-~ 312 (508) +.+++.+- .+...|+|.+.-+...|+.. .....+.. -|+. +.+..++ |..+. +++....+.. - T Consensus 190 ----vih~k~~~-----~dg~~G~spl~~~~~~i~~~-~~~~~~~~~~f~ng~~p~gil~~~~~~~--~~e~~e~~r~~~ 257 (441) T protein:vir:79 190 ----MLDIKFYS-----LDGINGLSLLDTLSRTIESD-NNGKDFLNNFLRNGTHAGGILKMKGVLD--NKKARDRAREEF 257 (441) T ss_pred ----EEEeccCC-----CCCccccCHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcEEEEcCCCCC--CHHHHHHHHHHH Confidence 12333211 11236899888888777643 34444444 3555 3455444 22111 1111100000 0 Q ss_pred cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhH Q lcl|Aclame:pro 313 QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTR 387 (508) Q Consensus 313 ~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~ 387 (508) ...|.+.. .+ -+++..++.++......++.+..+...++|....|++|..++.+..+. +.++....+ ..++ T Consensus 258 ~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-s~~q~~~~~---~~tl 333 (441) T protein:vir:79 258 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDY---LSTL 333 (441) T ss_pred HHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHH---HHHH Confidence 01111110 00 012223555555555556777777888899999999999998654432 222222211 1233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 388 SSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFL 467 (508) Q Consensus 388 ~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l 467 (508) .-..+.++.+|...+ ... ...+.+.|+++.-...|.++.++...+++.+|+|+..+++ T Consensus 334 ~P~~~~ie~eln~kl------------~~~----------~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R 391 (441) T protein:vir:79 334 KPYITCVCAELNFKF------------NDE----------YVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIR 391 (441) T ss_pred HHHHHHHHHHHhhhc------------ccc----------ccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 333333333332211 110 1134677777777778999999999999999999999988 Q ss_pred HhcCCCCH---HHH-HHH-------HHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 468 QRNYGMTD---EQA-AEE-------LAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 468 ~~~~~~~d---eea-~~e-------~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ... |+++ -+. .-. ++.+ .+.....+......+.+|.++| T Consensus 392 ~~~-gl~Pi~ggd~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 392 QRD-GLAPIPGGNGSIHRVDLNHVNIELV-DEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHh-CCCCCCCCCcceEeecccccccccc-cccccccccccccccCCCCCCC Confidence 753 3322 110 000 0000 1111111111122233444444 No 199 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=96.16 E-value=0.00093 Score=37.20 Aligned_cols=381 Identities=12% Similarity=0.099 Sum_probs=160.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--H Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--K 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--~ 78 (508) =|||.++|+||++.- +...... ..+. .++ +..|..|. .+.. +..+..+ . T Consensus 14 ~g~~~~~~~~f~~~~-~~~~~~~--~~~~----~~~---------~~~~~~~~-------~v~~------~~al~~~~v~ 64 (424) T protein:vir:18 14 NGWWARLKSWFVGGR-LVTPNQG--SQTG----PVS---------AHGYLGDS-------SIND------ERILQISTVW 64 (424) T ss_pred CchHHHHHhhccccc-cccccch--hhcc----ccc---------cccccccc-------cccH------HHhhccHHHH Confidence 688888888885432 1111000 0000 000 11111111 1100 0011111 1 Q ss_pred HHHHHHHHhhhcCcceEe-e-CCcH--H--HHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIH-V-KDNN--E--ADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IK 145 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~-~-~~~~--~--~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~ 145 (508) ..++.+|+-+-+=|+.+- . .+.. . .+--+..+|.. | ....-.+.++...+-.|.+++.+..+. |+ +. T Consensus 65 ~cv~~Ia~~iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~ 144 (424) T protein:vir:18 65 RCVSLISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVIS 144 (424) T ss_pred HHHHHHHHhhccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEE Confidence 233333333333244431 1 1110 0 11112333321 1 112224445667788898888776654 44 35 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +..++|..+-+. .+++.+ ++++ ..+|.. . .|.. T Consensus 145 L~~l~~~~v~v~-~~~~~~-----~y~~-------------------~~~g~~-~---~~~~------------------ 177 (424) T protein:vir:18 145 LLPLQSANMDVK-LVGKKV-----VYRY-------------------QRDSEY-A---DFSQ------------------ 177 (424) T ss_pred EEEecCcceEEE-EcCCeE-----EEEE-------------------EeCCeE-E---Eecc------------------ Confidence 666777776542 333221 0111 001110 0 0100 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFD 302 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~ 302 (508) .+ ..+++.+-. +...|+|.+.-+...|......-....+-|+. +++.-++ |..++. T Consensus 178 ----~e----------Vihir~~~~-----dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~-- 236 (424) T protein:vir:18 178 ----KE----------IFHLKGFGF-----TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLT-- 236 (424) T ss_pred ----cc----------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCC-- Confidence 00 123332211 22468888877776665543333333344554 3554444 222211 Q ss_pred CCCCccCCcc-cceEeeecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 303 DEHKPTFDTE-QNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 303 ~~~~~~~~~~-~~~~~~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) ++....+... .+.+.+-+.+. +++..++.++......++.+..+...++|....|++|..+++...+..+++.+. T Consensus 237 ~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e 316 (424) T protein:vir:18 237 EQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIE 316 (424) T ss_pred HHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHH Confidence 1111001000 00111000000 122235555544445566777777788999999999999987765544333222 Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 378 SNNSMT-YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 378 ~~~~~l-~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) ...... ..++.-....++.+|..- ++.... .....+.|+++.-+..|..+.++...+++ T Consensus 317 q~~~~f~~~tl~P~~~~ie~~ln~~------------L~~~~~--------~~~~~~~fd~~~llr~d~~~r~~~~~~~~ 376 (424) T protein:vir:18 317 QQNLGFLQYTLQPYISRWENSIQRW------------LIPSKD--------VGRLHAEHNLDGLLRGDSASRAAFMKAMG 376 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------------cCCccc--------cCCeEEEEechhhhccCHHHHHHHHHHHH Confidence 222111 122222333333333221 111100 01245778888878889999999999999 Q ss_pred hCCCCCHHHHHHhcCCCCH-HHHHHH-----HHHHHHhccCCCCCCcccccCCCC Q lcl|Aclame:pro 457 AIGALSKQTFLQRNYGMTD-EQAAEE-----LAKIQSEAPTDTFEGGRSAILNGG 505 (508) Q Consensus 457 ~~Gi~s~et~l~~~~~~~d-eea~~e-----~~ri~~E~~~~~~~~~~~~~~~~~ 505 (508) ..|+|+.-+++... |+++ +..++- +..+.. .....++. .+|+ T Consensus 377 ~~G~~T~NE~R~~~-gl~pi~ggD~~~~~~n~~~l~~--~~~~~~~~----~n~a 424 (424) T protein:vir:18 377 ESGLRTINEMRRTD-NMPPLPGGDVAMRQAQYVPITD--LGTNKEPR----NNGA 424 (424) T ss_pred hCCCcCHHHHHHHh-CCCCCCCcCeeeeccCccchhh--hhccCCcc----ccCC Confidence 99999999988753 3322 111110 001100 00001111 1111 No 200 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=96.12 E-value=0.00098 Score=37.09 Aligned_cols=371 Identities=12% Similarity=0.133 Sum_probs=157.6 Q ss_pred HHHhcCCCccccCc--cC---------------------------------------CCccccccccccchH--HHHHHH Q lcl|Aclame:pro 47 LDYYSDKLQYIHYQ--AS---------------------------------------DGIKKKRLKNTINMA--KTAARR 83 (508) Q Consensus 47 ~~~Y~g~~~~~~~~--~~---------------------------------------~~~~~~~~~~~~n~~--~~iv~~ 83 (508) -+||.-+..++..+ .. .+.. ......+..+ -..|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~~~V~acv~~ 79 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQ-YKDIEAIRHSDIFTAVMM 79 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccc-cchhhhhccHHHHHHHHH Confidence 12332211111000 00 0000 0000011111 112344 Q ss_pred HHHhhhcCcceEeeCCcHHHHHHHHHHHH--hhh---HHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEE Q lcl|Aclame:pro 84 IASVVFNEKAEIHVKDNNEADKFLNDVLE--DND---FKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYP 156 (508) Q Consensus 84 ~A~ll~~e~~~i~~~~~~~~~~~l~~~l~--~n~---f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~P 156 (508) +|+-+-.=|+.+.-++....+..+-.+|. -|. ...-.+.++..++..|.+++.+..+. |+ +.+-.++|+.+.+ T Consensus 80 Ia~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v 159 (441) T protein:vir:98 80 IASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIEL 159 (441) T ss_pred HHHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEE Confidence 44444333555542222111222233332 121 11334555677788899988877764 44 4577888998877 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) ...++|++ +|.. .. ....+. .+. ..|.. . + T Consensus 160 ~~~~~g~~------------------~~~~-~~--~~~~~~-~~~-~~~~~------------~----------d----- 189 (441) T protein:vir:98 160 KLDARGRL------------------YYFH-QR--IDSNGN-NIE-RNVKF------------E----------D----- 189 (441) T ss_pred EECCCCcE------------------EEEE-EE--eccCcc-eee-EEEcc------------c----------c----- Confidence 53333322 1110 00 000000 000 00100 0 0 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHH-HHHhc-cceeee--chHHhcCCCCCCccCCcc Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIW-EIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE 312 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~ 312 (508) ..+++.+-. +...|+|.+.-+...|+... ...++.. -|+.| .+..++ |..+. +++....+... T Consensus 190 -----viHir~~~~-----dg~~G~spi~~~~~~i~~~~-a~~~~~~~~f~ng~~~~gil~~~~~~~--~~e~~~~~~~~ 256 (441) T protein:vir:98 190 -----MLDIKFYSL-----DGINGLSLLDTLSRTIESDN-NGKDFLNNFLRNGTHAGGILKMKGVLD--NKKARDRAREE 256 (441) T ss_pred -----EEEeccCCC-----CCccccCHHHHHHHHHHHHH-HHHHHHHHHHhccCCCcEEEEeCCCCC--CHHHHHHHHHH Confidence 123332111 12358888887777775544 3344443 45653 444443 22221 11111111000 Q ss_pred -cceEeeec-CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhh Q lcl|Aclame:pro 313 -QNVYVGVL-SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQT 386 (508) Q Consensus 313 -~~~~~~~~-~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~ 386 (508) ...|.+.. .+ -+++..++.++......+..+..+...++|....|++|..++.+..+. +.++....+ ..+ T Consensus 257 ~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~-s~~q~~~~y---~~t 332 (441) T protein:vir:98 257 FHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDY---LST 332 (441) T ss_pred HHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHH---HHH Confidence 01111110 00 012234555555555556777778888899999999999998654332 222222221 123 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) +.-+...++.+|...+ ... ...+.+.|+.+.-+..|.++.++...+++..|+|++.++ T Consensus 333 l~P~~~~ie~~ln~~L------------~~~----------~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~ 390 (441) T protein:vir:98 333 LKPYITCVCAELNFKF------------NDE----------YVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEI 390 (441) T ss_pred HHHHHHHHHHHHHhhc------------ccc----------ccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 3333333333332211 110 113456777777677899999999999999999999998 Q ss_pred HHhc--CCCCHHH--H---HH---HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 467 LQRN--YGMTDEQ--A---AE---ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 467 l~~~--~~~~dee--a---~~---e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +... |-+..-+ . .. -++.+.+.+. ..+........||.++| T Consensus 391 R~~~gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~-~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 391 RQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQM-NKSRATDKKLKGGEENE 441 (441) T ss_pred HHHhCCCCCCCCCcceEeeccccccccccccccc-ccccccccccCCCCCCC Confidence 8653 2221111 0 00 0011111111 11111112223333344 No 201 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=95.52 E-value=0.0019 Score=35.48 Aligned_cols=452 Identities=13% Similarity=0.078 Sum_probs=194.4 Q ss_pred CCh------H---H-HHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccc Q lcl|Aclame:pro 1 MGL------I---Q-RIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRL 70 (508) Q Consensus 1 m~~------~---~-~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 70 (508) |+= - + --|+|.+..-. .-.|. ...-.+++...+.|.+.... .++....-+ T Consensus 1 m~~~~~~~~~~tpe~la~~W~~~I~~----------a~~~~-----~~~h~r~~~~~k~y~~~~~~-----~~~~~~r~n 60 (663) T protein:vir:34 1 MNESQPTDFADTPQGWAQRWQEEMSA----------AREPL-----EKWHTQGKEIVKRYRDERDS-----AHDAETRWN 60 (663) T ss_pred CCccccccchhcchhHHHHHHHHHHH----------HHhcc-----chHHHHHHHHHHHhhccccC-----CCccccccc Confidence 110 0 0 01222111000 00000 12334555666666553211 111111222 Q ss_pred ccccchHHHHHHHHHHhhhcCcceEeeC----C-cH----HHHHHHHHHH------HhhhHHHHHHHHHHHHhhcCCEEE Q lcl|Aclame:pro 71 KNTINMAKTAARRIASVVFNEKAEIHVK----D-NN----EADKFLNDVL------EDNDFKNKFEEALEKGVALGGFAM 135 (508) Q Consensus 71 ~~~~n~~~~iv~~~A~ll~~e~~~i~~~----~-~~----~~~~~l~~~l------~~n~f~~~~~~~~~~a~~~G~~~~ 135 (508) .+|.|+-..+-. +.+.+|.++|. + ++ .+-+.+...+ ++++|...+...+.+++-+|.+.+ T Consensus 61 l~~sni~~i~P~-----iYar~P~p~V~~rf~d~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll~~rG~~ 135 (663) T protein:vir:34 61 LFSTNIQTQMAS-----LYGQTPKVSVSRRFADADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLLPGFGLC 135 (663) T ss_pred hhhhhHHHHhhh-----hhcCCCcceeeecccCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccceE Confidence 333343333333 33355666552 1 11 1233444444 556799999999999999997777 Q ss_pred EEEEeC------------------C--------------eeEEEEEcCCeEE--EEEEcCCCeEEEEEEEEEEEee---- Q lcl|Aclame:pro 136 RPYIDG------------------N--------------HIKIAWVRADQFY--PLQSNTNDISEAAIASRTQRTE---- 177 (508) Q Consensus 136 ~~~~d~------------------~--------------~~~i~~v~a~~~~--Pi~~d~~~~~~~~f~~~~~~~~---- 177 (508) ++.|.. + +++|++|.-..|. | ......+.-++|.-..++.+ T Consensus 136 ~v~Ye~~~~~~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~dfl~~p-Ar~W~ev~wva~r~~mtk~e~~~r 214 (663) T protein:vir:34 136 RIRYEVEWEEVAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDVLWSP-ARVWHEVRWLAFRNLLDMREFNAR 214 (663) T ss_pred EEEeecccchhccccccCCCccccchhcccccchhhcccceeeeeechhhcccch-hhccccccceeeeccCCHHHHHHh Confidence 777621 1 4667777666654 2 11122333333322111100 Q ss_pred ---------------------cCCc---E---EEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCc Q lcl|Aclame:pro 178 ---------------------SNQT---K---YYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) Q Consensus 178 ---------------------~~~~---~---~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 230 (508) ..++ . .--..|+ |... ++++|.--. |-.+.|..-|. T Consensus 215 f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~VwEI--WdK~-----~~~V~w~~e----g~~~~L~~~~p------ 277 (663) T protein:vir:34 215 FDADGSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVWEI--WDKG-----GRKVDWYVE----GYSAVLDTQPD------ 277 (663) T ss_pred hcCChhhhhhhhccCcCCccccCCCCCcchhcCcceeEE--EecC-----CcEEEEEEc----CcceecccCCC------ Confidence 0000 0 0011122 2221 122221101 11222222111 Q ss_pred ceeecCCCcceEEEecCCc--cccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCcc Q lcl|Aclame:pro 231 QVTISGLQRPLFAYFKTPG--ANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPT 308 (508) Q Consensus 231 ~~~~~g~~~~~f~~~~~~~--~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~ 308 (508) .....| |||.|. ..+...+|-..+++|.-++.+++++|..-.++.--.+.-+++-+.|.+. ++.-+.. T Consensus 278 ~lgl~~-------ffPcPrpl~~~~~~ds~ipvpd~~~y~~~~~E~n~~t~Rin~l~d~ikv~gvy~~~~---g~~i~~~ 347 (663) T protein:vir:34 278 PLGLES-------FFPCPKPLLANWTTDKVVPRPDFVLAQDLYKEIDLVSTRITLLERAIRVVGVYDKSS---GLTIGRL 347 (663) T ss_pred CCCCCC-------CCCCcccccceecCCCeecCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhceeecccc---chhHHHH Confidence 111222 333332 2334445667899999999999999998888766556677777775322 1111111 Q ss_pred C-CcccceEeeecC----CCCCC--CcceEeeccCCHHHHHHHH----HHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 309 F-DTEQNVYVGVLS----DDNNG--LGVKDMTTPIRTVQYKDAI----DHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 309 ~-~~~~~~~~~~~~----~~~~~--~~i~~~~~dir~e~~~~~l----~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) + ..-++.+..+.. .+.++ ..|..+..+ ++.+.+..| ..+...+++.+|++.-.=| .....+||||-. T Consensus 348 l~~a~~n~lvpV~~~~~~~~~gg~~k~I~~~pi~-~~~~aI~~l~~~r~qir~d~~qITGiaDi~Rg-a~~a~ETatAQ~ 425 (663) T protein:vir:34 348 LSEAAQNDLIPVENWLTFADKGGLRGVVDWFPLE-PVVAALTSLRDYRRELVDALHQVTGMADIMRG-ASDPRETAMAQG 425 (663) T ss_pred HHHhhCCCceecchhhhhhhhcCccchhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc-ccCcchhhHHHH Confidence 1 111222333321 11121 113332222 122222222 2223456788898843322 222457888877 Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc-----------------cccCcceEEEEeCCC Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLD-----------------SASQPLDIECHFDDG 440 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~ei~i~f~d~ 440 (508) .+.+-+-.++..++.++++.+.++++....+.... +...-.....+. .....+.|.|.=+-. T Consensus 426 IKsq~gS~RIqe~qdevqR~arDi~ql~AEIl~~~-~~~etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT 504 (663) T protein:vir:34 426 VKAKFGSIRLQRLQDEVARFASDIQRLKAEVIAEH-YDVASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAV 504 (663) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCC Confidence 77788889999999999999999999876664311 111000000111 111445677777888 Q ss_pred ccCCHHHHHHHHHHHHhC-C-CC------------CHHHHHH-hc---CCCCH----HHHHHHHHHHHHhccC--CCCCC Q lcl|Aclame:pro 441 VFVNKDKQLEEDAKVLAI-G-AL------------SKQTFLQ-RN---YGMTD----EQAAEELAKIQSEAPT--DTFEG 496 (508) Q Consensus 441 i~~d~~~e~~~~~~~~~~-G-i~------------s~et~l~-~~---~~~~d----eea~~e~~ri~~E~~~--~~~~~ 496 (508) +..|..++.+.++..+.+ + ++ ....... .+ -+++. +.|...+....++.+. ..+.+ T Consensus 505 ~~~D~~~eK~~~~E~l~~i~~~~qq~~pl~~q~p~~~p~l~Ellk~~~~~f~~~~qie~ai~~~~~~~e~aa~~~~~~~p 584 (663) T protein:vir:34 505 SLQDFAALRNEKMEVLSGIASFMQGVAPLAQQVPGSAPFLLQMLKWSVSGLRGSSTIEGVLDKAIAAAEEAQKQAAQQSP 584 (663) T ss_pred CcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCChhhhHHHHHHHHHhhhHHHhhccCCCCc Confidence 888887776655544322 1 11 1111000 00 01111 2233333222221111 11111 Q ss_pred cccccCCCCCCC Q lcl|Aclame:pro 497 GRSAILNGGDGE 508 (508) Q Consensus 497 ~~~~~~~~~~g~ 508 (508) ...-...-..++ T Consensus 585 a~~~~~~k~~~~ 596 (663) T protein:vir:34 585 APQQPDPKVVAQ 596 (663) T ss_pred ccchhhHHHHHH Confidence 110000001111 No 202 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=95.19 E-value=0.0009 Score=37.27 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=79.9 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHH Q lcl|Aclame:pro 263 VVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYK 342 (508) Q Consensus 263 ~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~ 342 (508) +|. .++|-+.++.--..+.. |+- + +...+.++.++..+..+ ..++.++.++ .... T Consensus 1 V~k-~~~l~~~~~~~~~~~~~-------r~~----~----------~~~~~~~~~~~~ld~~~-e~~e~~~~~l--sGl~ 55 (201) T protein:vir:10 1 MWK-AKGLADLCDDSDGAARL-------RLA----Q----------VDNNSGVGQAIGIDADS-EEYNVLNSDI--GGID 55 (201) T ss_pred Ccc-chHHHHHhcCChHHHHH-------HHH----H----------HHHhhhhhhhheeecCC-cceeeeecCc--CChH Confidence 111 11111111100000000 000 0 00111111111112111 1366555443 5566 Q ss_pred HHHHHHHHHHHHHhCCCchh-cccccccc-chHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccc Q lcl|Aclame:pro 343 DAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGK 419 (508) Q Consensus 343 ~~l~~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~~-~~~~~al~~li~~i~~l~~~~~~~~~~~ 419 (508) ..+......|...+|++... ||...+|. +|+..-...| |..+..+| ..++..|+.|+..+.. T Consensus 56 d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~ny---yd~i~~~Qe~~l~p~le~l~~~~~~------------ 120 (201) T protein:vir:10 56 TFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETF---YGYVDRKRKAELLPLLEFLLPFIVT------------ 120 (201) T ss_pred HHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC------------ Confidence 67777778888888876553 55555564 3554333333 55555555 5677777776653220 Q ss_pred cccccccccCcceEEEEeCCCccCCHHHHHH-------HHHHHHhCCCCCHHHHHHhc------CCCCHHHHHHHHHHHH Q lcl|Aclame:pro 420 PLFTLDSASQPLDIECHFDDGVFVNKDKQLE-------EDAKVLAIGALSKQTFLQRN------YGMTDEQAAEELAKIQ 486 (508) Q Consensus 420 ~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~-------~~~~~~~~Gi~s~et~l~~~------~~~~deea~~e~~ri~ 486 (508) +-+++|.|+.-...+..+.++ .+.+++.+|++|...++..+ .+..+..++.++.... T Consensus 121 ----------~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e 190 (201) T protein:vir:10 121 ----------EQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVKIGEGSIQTEVVINE 190 (201) T ss_pred ----------CCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCCCCCCccccccc Confidence 236889999877777555544 33445566777666554321 1122222222222111 Q ss_pred HhccCCCCCCc Q lcl|Aclame:pro 487 SEAPTDTFEGG 497 (508) Q Consensus 487 ~E~~~~~~~~~ 497 (508) .+.++..+.+. T Consensus 191 ~~dp~~~~~~~ 201 (201) T protein:vir:10 191 SEDPLDVSANN 201 (201) T ss_pred cCCCCCCCCCC Confidence 11111111111 No 203 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=95.18 E-value=0.0026 Score=34.76 Aligned_cols=453 Identities=11% Similarity=0.136 Sum_probs=182.7 Q ss_pred HHhhhhhhhhHHhhccccccC-CHHH---HHHHHHHHHHhcCCCccccCccCCCccc----cccccccchHHHHHHHHHH Q lcl|Aclame:pro 15 AAATGVTGSLSKITDDPRISI-DPDE---YVRIQTDLDYYSDKLQYIHYQASDGIKK----KRLKNTINMAKTAARRIAS 86 (508) Q Consensus 15 ~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~i~~~~~~Y~g~~~~~~~~~~~~~~~----~~~~~~~n~~~~iv~~~A~ 86 (508) +.++|.. +|++.......++ .+.+ ...|.. .||.-..+............ -|.....+-....++..++ T Consensus 1 m~~lfgf-~i~~~~~~~~~S~vpp~~~~~~~~i~~--g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIVn 77 (564) T protein:vir:10 1 MSQLFGF-LINEKEGQKGQSPVPPNDEASVSTVAG--GYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIVN 77 (564) T ss_pred Ccchhcc-eeeeeccCCCCCcccCCcCCChhhhhc--cccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhhc Confidence 2333211 1111111111111 0000 011111 12111111100000000000 0001111222223333332 Q ss_pred hh-h----cCcceEeeCCc---H----HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEE Q lcl|Aclame:pro 87 VV-F----NEKAEIHVKDN---N----EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWV 149 (508) Q Consensus 87 ll-~----~e~~~i~~~~~---~----~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v 149 (508) =+ + .+|+++.+++- + ...+..+.++.--+|.++..+.+.....-|..+||..+|. |-..+.++ T Consensus 78 eaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~eLr~l 157 (564) T protein:vir:10 78 EFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVIDLDNPKKGILELRYI 157 (564) T ss_pred ceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeeCCChhhhhhhhhhh Confidence 21 1 22556655431 1 1234456667667899999999999999999999999984 33468889 Q ss_pred cCCeEEEEEEc---CC-CeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 150 RADQFYPLQSN---TN-DISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 150 ~a~~~~Pi~~d---~~-~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +|.++=+++.. .+ ..+.+.--... .-.+....|++.+.. +-|.+......|..+ + T Consensus 158 DPr~i~~vr~i~~~~~~~~~~v~k~~~~------~~~y~~~~Eyy~Ynp--------~~~~g~~~~~~~~~~-------~ 216 (564) T protein:vir:10 158 DSLKIRKVRQKLKDVDPNRKEIEKGTAL------QYDYGDFIEYYIYNP--------KGFAGNIPMVTGSMD-------W 216 (564) T ss_pred cccceeeeeeeccccccccceeeeeeee------eccccccccceeecc--------ccccCcccccccccc-------c Confidence 99987776421 11 11111100000 000111122222111 111111111111100 0 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch------ Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP------ 296 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~------ 296 (508) +.- ..+.+ ++--++|...-+. +.....=+|-+.+|.--+..|=-.-+.+ .+--|.-..|||- .- T Consensus 217 ~~~-~~ikI---~~daI~y~hSGL~---d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~ 289 (564) T protein:vir:10 217 SNQ-EGIKI---ASDAIAQSTSGLM---DLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKV 289 (564) T ss_pred ccc-cceee---chhhcceecccce---eCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCch Confidence 000 00000 0000111100000 0011111334444443333332222222 2223455566663 11 Q ss_pred ---HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 ---GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQ 355 (508) Q Consensus 297 ---~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~ 355 (508) .+++ ||..++..- +++.+..+. -++..+.-|+++..--.. .-+..++-+.+.++.. T Consensus 290 KAeqYlr~iM~k~KNklVYDa~TGevr--ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnL-gem~DV~YF~kKLY~a 366 (564) T protein:vir:10 290 KAEQYLRDVMSRYRNKLVYDGQTGEIR--DDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNL-GELKDVEYFKKKLYNS 366 (564) T ss_pred hHHHHHHHHHHhcCceEEEeccCceec--ccchhhhhHhhhcccccCCCcccceeeccccCCc-chHHHHHHHHHHHHHH Confidence 1111 233333321 222222221 122233346665543221 2345667777888888 Q ss_pred hCCCchhccccccc--cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceE Q lcl|Aclame:pro 356 IGLSTGTFSYSNDG--VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDI 433 (508) Q Consensus 356 ~g~s~~~~~~~~~~--~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei 433 (508) .+++.+-+..++++ ..-++||.-..-....-+..++..|..-|.++++.=|.|-. .+. .-.+........+ T Consensus 367 LnVP~SRl~~e~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKg---iit----~eeW~~i~~~I~~ 439 (564) T protein:vir:10 367 LNLPPSRLTDDNKAFNLGKSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKG---IIT----PEDWDDMEEHIQY 439 (564) T ss_pred hCCCcccccCCCceeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCC----HHHHHHHhhcceE Confidence 88888777766432 22355666655555556666666677767776665443311 111 1111111222233 Q ss_pred EEEeCCCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-------cc Q lcl|Aclame:pro 434 ECHFDDGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-------RS 499 (508) Q Consensus 434 ~i~f~d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-------~~ 499 (508) .+..+....+=.+.++-+.+. +. ... ..|.+++.++....||+|.+++-++|++|.......++ .. T Consensus 440 ~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~ 519 (564) T protein:vir:10 440 DFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDM 519 (564) T ss_pred EeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCc Confidence 333333333333333322211 11 112 45999989999999999999999999998754322211 11 Q ss_pred ccCC-------CCC-CC Q lcl|Aclame:pro 500 AILN-------GGD-GE 508 (508) Q Consensus 500 ~~~~-------~~~-g~ 508 (508) ...+ .+. |+ T Consensus 520 ~~~~~~~~p~~~~~~~~ 536 (564) T protein:vir:10 520 EKQNQAFAPELQAAQDD 536 (564) T ss_pred cCCCCcCCcchhhhccc Confidence 1111 111 11 No 204 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=94.88 E-value=0.0033 Score=34.22 Aligned_cols=434 Identities=12% Similarity=0.070 Sum_probs=159.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccC-CHHHHHHHHHHHH----------HhcCCCccccCccCCCccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISI-DPDEYVRIQTDLD----------YYSDKLQYIHYQASDGIKKKR 69 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~i~~~~~----------~Y~g~~~~~~~~~~~~~~~~~ 69 (508) ||---.+..+=-.-...--...-|-+..+ .++.. ++-..++...... ||.+. -++.|....- T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~F~Gy~~la~----- 118 (698) T protein:vir:10 46 MGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSNYTPRERRAASYALDFNGTSMDALSFVTSS-GFPGFPTLVL----- 118 (698) T ss_pred hcccccccccccccccCCCccccccccce-eccccCCccccchhhhhhcccccccccchhhhcc-CcchHHHHHH----- Confidence 44210000000000000000000001111 11111 1111111111111 12111 0000000000 Q ss_pred cccccchHHHHHHHHHHhhhcCcceEeeC--------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 70 LKNTINMAKTAARRIASVVFNEKAEIHVK--------------------DNNEADKFLNDVLEDNDFKNKFEEALEKGVA 129 (508) Q Consensus 70 ~~~~~n~~~~iv~~~A~ll~~e~~~i~~~--------------------~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~ 129 (508) ..-++....++...|.-+..+=..++.. +.++ .+.|..-++.-+.+..+++.++.+-. T Consensus 119 -laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dq-i~~L~~e~erl~V~~~l~eai~~aRl 196 (698) T protein:vir:10 119 -LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ-LKQINDEIERLRIRDAVRTTVIHDQA 196 (698) T ss_pred -HhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHH-HHHHHHHHHHHHHHHHHHHHHHhccc Confidence 0001112333444444443332222211 1122 35678888888899999999999999 Q ss_pred cCCEEEEEEEeCCe--eEEEEEc-CCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEe Q lcl|Aclame:pro 130 LGGFAMRPYIDGNH--IKIAWVR-ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYK 206 (508) Q Consensus 130 ~G~~~~~~~~d~~~--~~i~~v~-a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~ 206 (508) +|+++...-+++.. ..-..++ +.. ..-|.+.....+.++...-. .|. ....-++ .+|+ T Consensus 197 fGGa~~~i~I~gdd~~l~~PL~~~~~~-----I~kGslKGL~ViDp~~vtP~----~~n-----~~dP~sp-----dfgk 257 (698) T protein:vir:10 197 FGRAHPYFKIKGDDQIMDTPLVPRPYT-----VPKGSFQGLRVVEPYWVTPN----NYN-----SINPVAD-----DFYK 257 (698) T ss_pred ccceEEEEEeecCcccccccccccccc-----ccCccceeeeeecccccccc----hhh-----hccchhh-----ccCC Confidence 99998655554421 1101111 111 01122222222222211000 000 0000000 0000 Q ss_pred cCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 207 SDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR 286 (508) Q Consensus 207 ~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~ 286 (508) -....-.|.+|..+.+ +.+.|. |+--.+|+ .. +-.|+|....+.+-+++.+.+......-+. T Consensus 258 P~~y~V~G~~IH~SRL---------~~~vg~--pvpd~LKp-~y------~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~ 319 (698) T protein:vir:10 258 PSTWWMIGSEVHATRL---------HTIVSR--PVGDMLKP-TY------SFAGISMTQLAMPYIDNWLRTRQSVSDIVK 319 (698) T ss_pred CceEEEecceecceeE---------EEecCC--Cchhhhcc-hh------ccCCccHHHHHHHHHHHHHHHhhhHHHHHH Confidence 0000001222111111 011111 11011111 11 123899999999999999887655554332 Q ss_pred hccceeeechHHhcCCCCCCc--------cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 287 LGQKHIAVQPGMLRFDDEHKP--------TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGL 358 (508) Q Consensus 287 ~~~~~i~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~ 358 (508) ...-..+ ..+|-.--.+++. .+..-+..+..+-.|. +...++.+ +......-..+..+..++.-.+++ T Consensus 320 ~~~~~~l-~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq~--st~lSGLddVi~qf~q~VAgaa~I 395 (698) T protein:vir:10 320 QFSVSGI-LMDLAQALTPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQF--NTPLSGLDALQAQAQEQMSAVSHI 395 (698) T ss_pred HhhHHHH-HHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEec-CCcceEEE--ecCcCCHHHHHHHHHHHHHhhhcC Confidence 2111111 1122111111110 0111111222222221 11235544 445566666777777777777777 Q ss_pred Cchh-cccccccc-chHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEE Q lcl|Aclame:pro 359 STGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIEC 435 (508) Q Consensus 359 s~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i 435 (508) +... ||...+|. +|++.=...| |..+..+ ++.++..|+.|+..|..- .. |.. +.+|++ T Consensus 396 PltkLfGqSPkGlNATGE~D~rnY---YD~I~s~Qe~~L~p~L~rl~~ii~rS--~~-----------G~i---dp~i~~ 456 (698) T protein:vir:10 396 PLIKLLGITPTGLNASSEGEIRVW---YDYVRAYQRNALQQLMNDVIVMIQLS--LF-----------GAV---DPSIKW 456 (698) T ss_pred chhhhhccCCcccCccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--hc-----------CCC---CCcceE Confidence 6553 66666675 6665333334 4444444 467888888877665322 11 111 236888 Q ss_pred EeC--CCccCCHHHHH-----HHHHHHHhCCCCCHHHHHHhcC-----CCCH-HHHHHHHHHHHHhccCCCCCCcc---- Q lcl|Aclame:pro 436 HFD--DGVFVNKDKQL-----EEDAKVLAIGALSKQTFLQRNY-----GMTD-EQAAEELAKIQSEAPTDTFEGGR---- 498 (508) Q Consensus 436 ~f~--d~i~~d~~~e~-----~~~~~~~~~Gi~s~et~l~~~~-----~~~d-eea~~e~~ri~~E~~~~~~~~~~---- 498 (508) .|+ ..+...+.+++ +++..++..|+++....+.+.- ++.. .+++.+- ..++++...+. T Consensus 457 ~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p-----~~~~~~~~~~~~~~~ 531 (698) T protein:vir:10 457 QWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDP-----GAPADDDIDGVLTYV 531 (698) T ss_pred EeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccC-----CCCCCCcchHHHhhh Confidence 898 33333222222 2334445667777776654431 1110 0111100 00011111111 Q ss_pred -cccCCCCCCC Q lcl|Aclame:pro 499 -SAILNGGDGE 508 (508) Q Consensus 499 -~~~~~~~~g~ 508 (508) ...++|..|+ T Consensus 532 ~~~~~~~~~~~ 542 (698) T protein:vir:10 532 QRMAEGGDTGA 542 (698) T ss_pred cCCcCCCCccc Confidence 1222333333 No 205 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=94.70 E-value=0.0037 Score=33.90 Aligned_cols=426 Identities=12% Similarity=0.089 Sum_probs=162.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhH-Hhhc----cccccCCHHHHHHHHHHHHHhc------CCCccccCccCCCccc-- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLS-KITD----DPRISIDPDEYVRIQTDLDYYS------DKLQYIHYQASDGIKK-- 67 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~-~~~~----~~~i~~~~~~~~~i~~~~~~Y~------g~~~~~~~~~~~~~~~-- 67 (508) |-+++-+++.|- .-+.+.+.- ++.+ ...-++.+-+.+. ++.+. +.+..++.++...... T Consensus 1 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 72 (535) T protein:vir:10 1 MAILKDLRNAFS----LSNKKSTSYIELGDYDKDIVNKAIRPGRASA----RDTVDGIDIADGNVAGQYSVASISDVLST 72 (535) T ss_pred ChhhHHHHHHHH----hhhhhhhhhHHHhhhhHHHHHhhhhhhhhhh----hccccccccccCCcccccccCccccccCH Confidence 998888877763 111111111 1110 0000222222221 11111 1111111111100000 Q ss_pred -cccccc--cchHHHH----HHHHHHhhh---------cCcceEeeC---Cc--H-HHHHHHHHHHHh--h------hHH Q lcl|Aclame:pro 68 -KRLKNT--INMAKTA----ARRIASVVF---------NEKAEIHVK---DN--N-EADKFLNDVLED--N------DFK 117 (508) Q Consensus 68 -~~~~~~--~n~~~~i----v~~~A~ll~---------~e~~~i~~~---~~--~-~~~~~l~~~l~~--n------~f~ 117 (508) .-.+.. ..+...+ ++..|.|-+ +=|+.+.-. .. . .....|..+|.. | +|+ T Consensus 73 ~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~ 152 (535) T protein:vir:10 73 KKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTF 152 (535) T ss_pred HHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHH Confidence 000000 0111222 233332211 112222101 11 1 111234444431 2 233 Q ss_pred H-HHHHHHHHHhhcCCE-EEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEe Q lcl|Aclame:pro 118 N-KFEEALEKGVALGGF-AMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQ 193 (508) Q Consensus 118 ~-~~~~~~~~a~~~G~~-~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~ 193 (508) . .+..++..++.+|+. ++.+..+. |++ .+..++|+++.+.....+.. ...+|. ... T Consensus 153 ~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~---------------~~~~~~-----~~~ 212 (535) T protein:vir:10 153 PRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKD---------------QPRKFE-----QFV 212 (535) T ss_pred HHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCcccc---------------CceEEE-----EEe Confidence 3 455566777777764 55555553 554 57788888887642211110 001110 001 Q ss_pred CCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 194 DNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 194 ~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) +++. . ..++-. + +.|++.. +........+|+|.+.-+...|.. T Consensus 213 ~~~~-~---------------~~~~~~-----------------e---iih~~~~-~~~~~~~~~~G~Spi~~~~~~i~~ 255 (535) T protein:vir:10 213 SETK-S---------------VKFSER-----------------N---LTFINYW-NLSDTDRRGYGYSPVEASIPLIRA 255 (535) T ss_pred cCce-e---------------EEECcc-----------------c---EEEEecc-CCCCcccccccccHHHHHHHHHHH Confidence 1110 0 000000 0 1233211 011112245799998888887777 Q ss_pred HHHHHHHHHHHHHhc-cceeee--chHHhc-CCCCCCccCCcc-cceEee--------ecCCCCCCCcceEeeccCCHHH Q lcl|Aclame:pro 274 INDTHDQFIWEIRLG-QKHIAV--QPGMLR-FDDEHKPTFDTE-QNVYVG--------VLSDDNNGLGVKDMTTPIRTVQ 340 (508) Q Consensus 274 lD~~~s~~~~e~~~~-~~~i~v--~~~~~~-~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~i~~~~~dir~e~ 340 (508) ....-....+-|+.| .+.-++ |..+-. .+++....+... ...|.+ +..+ .+..++.++......+ T Consensus 256 ~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~--~g~~~~~l~~~~~D~q 333 (535) T protein:vir:10 256 IYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAA--KDAKFVNMTQNSRDME 333 (535) T ss_pred HHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccC--CCceEEecCCChhHHH Confidence 665544445556764 443332 211000 000000001000 011111 1111 1223444454445566 Q ss_pred HHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccc Q lcl|Aclame:pro 341 YKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTRSS-YLTMVEKAIDELCQSIFELANAGALFDDG 418 (508) Q Consensus 341 ~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~~~-~~~~~~~al~~li~~i~~l~~~~~~~~~~ 418 (508) +.+..+...+.|....|++|..+|+...+..+. +....+.++ .++.. ....++.+|..++..+-...+.. ++.. T Consensus 334 fle~~~~~~~eIa~afgVPp~~lG~~~~at~sn--~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~-Ll~~- 409 (535) T protein:vir:10 334 FDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTG--KSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDK-IMRY- 409 (535) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhccccCccccc--chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccc- Confidence 777778888999999999999998865543211 011111111 11111 22234445555555544332221 1110 Q ss_pred ccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHHH-------HHHHHHHHH-h Q lcl|Aclame:pro 419 KPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQA-------AEELAKIQS-E 488 (508) Q Consensus 419 ~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~deea-------~~e~~ri~~-E 488 (508) ....+.|.|+.....|..+.. +..++..+|.|+.-+++... |-+..-++ ...+.-... + T Consensus 410 ----------~~~~~~f~f~~l~~~d~~~r~-~~~~~~~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~ 478 (535) T protein:vir:10 410 ----------VDTDYRFSFTLGDAQDKLQEE-QVWKLKLANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQ 478 (535) T ss_pred ----------cCCeEEEEeccccccCHHHHH-HHHHHHHcCCCCHHHHHHHhCCCCCCCccccccccchhhccccccccc Confidence 123477889887777766554 44455667789999988753 22211111 000000000 0 Q ss_pred ccCCCC----------CCccccc-------CCCCCCC Q lcl|Aclame:pro 489 APTDTF----------EGGRSAI-------LNGGDGE 508 (508) Q Consensus 489 ~~~~~~----------~~~~~~~-------~~~~~g~ 508 (508) ...+.+ ...+... .+..||+ T Consensus 479 ~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~ 515 (535) T protein:vir:10 479 PNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPK 515 (535) T ss_pred ccCCCCCCCccccCCccccCcccccccccccCCCCCC Confidence 000000 0000000 0011111 No 206 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=94.52 E-value=0.0042 Score=33.62 Aligned_cols=386 Identities=11% Similarity=0.078 Sum_probs=149.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) |++|.| .+++++....+ +.+... ..+ +. ...+-.|. +. .+..+... ......-- T Consensus 1 m~~~~~-~~~~~~~~~~~-----~~~~~~-~~~--~~-----~~~~~~~~-~~----~~~~v~~~----~a~~~~~v~~~ 57 (412) T protein:vir:26 1 MNVIAK-ENIVTRIKKKL-----IDNWID-QST--SK-----LYDFSPWK-NR----SFWGVINN----TLETNETIFSA 57 (412) T ss_pred Cccchh-hhhhhhhhhhH-----hhhhhc-ccc--cc-----cccccccC-Cc----cccccchh----hhhccHHHHHH Confidence 999865 22222111110 001110 000 00 00000000 00 00000000 00111111 Q ss_pred -HHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEE Q lcl|Aclame:pro 78 -KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWV 149 (508) Q Consensus 78 -~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v 149 (508) ..|++..|.+ |+.+--.. +..+..+..+|. -| ....-.+.++...+..|.+++.+..+. |+ ..+..+ T Consensus 58 i~~ia~~iA~l----p~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l 132 (412) T protein:vir:26 58 ITKLSNSMASL----PLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLL 132 (412) T ss_pred HHHHHHhHhhC----ceeEeecc-ccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEE Confidence 3344444443 44432111 111122223332 12 122334556777888899887776653 44 356677 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-+...+.+.. ..|. +. .. +|. ...|.. T Consensus 133 ~~~~v~v~~~~~~~~-----------------~~y~-~~---~~-~g~----~~~~~~---------------------- 164 (412) T protein:vir:26 133 NPDVVEMLIENQSRE-----------------LYYS-IH---AA-TGN----KLIVHN---------------------- 164 (412) T ss_pred cCceeEEEEeCCCcE-----------------EEEE-EE---cC-Cce----EEEEcc---------------------- Confidence 888877653322211 0110 00 00 010 000100 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-hccc-eeeechHHhcCCCCCCc Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQK-HIAVQPGMLRFDDEHKP 307 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~-~i~v~~~~~~~~~~~~~ 307 (508) .+ ..+++.+-. .+...|+|.+.-+...|+-.... ..+ .+. .+.+ .+++ ..++.-.. T Consensus 165 ~e----------vih~~~~~~----~~~~~G~s~i~~~~~~i~~~~a~-~~~--~~~~~~~~~~~i~-----~~~~~l~~ 222 (412) T protein:vir:26 165 MD----------MLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTF--NLTEMQKPDSFML-----KYGSNVGK 222 (412) T ss_pred cc----------EEEeCCCCC----CCCcccccHHHHHHHHHHHHHHH-HHH--HHHhcCCCCceEE-----ecCCCCCH Confidence 00 233432211 12345888877666665543332 222 122 2221 1111 11111000 Q ss_pred -cCCcccceEeeecC--C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHH Q lcl|Aclame:pro 308 -TFDTEQNVYVGVLS--D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) Q Consensus 308 -~~~~~~~~~~~~~~--~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~ 379 (508) ....-.+.+..... + -+++..++.++......++.+..+...++|....|++|..++...++. .++++.... T Consensus 223 e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~ 302 (412) T protein:vir:26 223 EKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRF 302 (412) T ss_pred HHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 00000001100000 0 012223454544444456677777778899999999999988754432 233322211 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) + ...++.-+...++.+|..- ++... .......+.+++++-+..|..+.++.+.+++.+| T Consensus 303 f--~~~~l~P~~~~ie~~ln~k------------Ll~~~-------~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G 361 (412) T protein:vir:26 303 Y--LQHTLLPIVKQYEEEFNRK------------LLTKT-------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSG 361 (412) T ss_pred H--HHHHHHHHHHHHHHHHHhh------------cCCcc-------cccCcceEEeechhhhccCHHHHHHHHHHHHhCC Confidence 1 1122222333333333221 11000 0011234666666666789999999999999999 Q ss_pred CCCHHHHHHhcCCCCHH-HHHHHHHHHHHhccCCCCCCccccc----CCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRNYGMTDE-QAAEELAKIQSEAPTDTFEGGRSAI----LNGGDG 507 (508) Q Consensus 460 i~s~et~l~~~~~~~de-ea~~e~~ri~~E~~~~~~~~~~~~~----~~~~~g 507 (508) +|+.-+++... |+++- ..++-+-. ..-.+.+.+...+... .+..+| T Consensus 362 ~~t~NE~R~~~-gl~p~~ggD~~~~~-~n~~~~~~~~~~~~~~~gG~~n~~e~ 412 (412) T protein:vir:26 362 YYTINDIREWE-DLPPVEGGDKPLIS-GDLYPIDTPLELRKSLKGGDKNVNES 412 (412) T ss_pred CcCHHHHHHHh-CCCCCCCcCeeeec-ccccccccchhhcccccCCCCCcCCC Confidence 99999988753 43331 11110100 0000111111111111 111111 No 207 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=94.46 E-value=0.0043 Score=33.53 Aligned_cols=419 Identities=11% Similarity=0.053 Sum_probs=158.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccC-CHHHHHHHHHHHH----------HhcCCCccccCccCCCccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISI-DPDEYVRIQTDLD----------YYSDKLQYIHYQASDGIKKKR 69 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~i~~~~~----------~Y~g~~~~~~~~~~~~~~~~~ 69 (508) ||---.+..+=-.-...--...-|-+..+ .++.. ++-..++...... ||.+. -++.|....- T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~F~Gy~~la~----- 118 (695) T protein:vir:78 46 MGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSNYTPRERRAASYALDFNGTSMDALSFVTSS-GFPGFPTLVL----- 118 (695) T ss_pred hcccccccccccccccCCCcccccceece-eccccCCccccchhhhhhcccccccccchhhhcc-CcchHHHHHH----- Confidence 44210000000000000000000000110 11111 1111111111111 12111 0000000000 Q ss_pred cccccchHHHHHHHHHHhhhcCcceEeeC--------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 70 LKNTINMAKTAARRIASVVFNEKAEIHVK--------------------DNNEADKFLNDVLEDNDFKNKFEEALEKGVA 129 (508) Q Consensus 70 ~~~~~n~~~~iv~~~A~ll~~e~~~i~~~--------------------~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~ 129 (508) ..-++....++...|.-+..+=..++.. +.++ .+.|..-+++-+.+..+++.++.+-. T Consensus 119 -laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dq-i~~L~~e~erL~V~~~l~eaik~aRl 196 (695) T protein:vir:78 119 -LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ-LKQINDEIERLRIRDAVRTTVIHDQA 196 (695) T ss_pred -HhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 0001112333444444443332222211 1122 35678888888899999999999999 Q ss_pred cCCEEEEEEEeCCe--eEEEEEc-CCeEEEEEEcCCCeEEEEEEEEEEEe------------ecCCcEEEEEEEEEEEeC Q lcl|Aclame:pro 130 LGGFAMRPYIDGNH--IKIAWVR-ADQFYPLQSNTNDISEAAIASRTQRT------------ESNQTKYYTLLEFHQWQD 194 (508) Q Consensus 130 ~G~~~~~~~~d~~~--~~i~~v~-a~~~~Pi~~d~~~~~~~~f~~~~~~~------------~~~~~~~yt~lE~h~~~~ 194 (508) +|+++...-.++.. ..-..++ +.. ..-|.+.....+.++... +-.+.++|.. T Consensus 197 fGGa~~~i~i~gdd~~l~~PL~~~~~~-----I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V-------- 263 (695) T protein:vir:78 197 FGRAHPYFKIKGDDQIMDTPLVPRPYT-----VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM-------- 263 (695) T ss_pred ccceEEEEEeccCcccccccccccccc-----ccCcceeeeEeecccccccchhhhccchhhccCCCceEEE-------- Confidence 99998655554321 1000000 000 001222222222221110 0001112211 Q ss_pred CceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHH Q lcl|Aclame:pro 195 NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDI 274 (508) Q Consensus 195 ~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~l 274 (508) .|++|--+.+ +.+.|. |+.-.+|+. . +-.|+|....+.+-+++. T Consensus 264 ------------------~G~kIH~SRL---------~~f~g~--plPd~LKp~-y------~~~GiSv~q~~~e~V~~~ 307 (695) T protein:vir:78 264 ------------------IGTEVHATRL---------HTIVSR--PVGDMLKPT-Y------SFAGISMTQLAMPYIDNW 307 (695) T ss_pred ------------------eceEEeeeeE---------EEecCC--Cchhhhhcc-c------ccCcccHHHHHHHHHHHH Confidence 0111111111 011111 111112211 1 123899999999999998 Q ss_pred HHHHHHHHHHHHhccceeeechHHhcC--CCCCCc------cCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHH Q lcl|Aclame:pro 275 NDTHDQFIWEIRLGQKHIAVQPGMLRF--DDEHKP------TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAID 346 (508) Q Consensus 275 D~~~s~~~~e~~~~~~~i~v~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~ 346 (508) +.+......-+...+-.++ -.+|... ++.... .+..-+..+..+..|. +...++.+ ++.....-..+. T Consensus 308 ~rT~~~v~~Li~~~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq~--stslSGLddVi~ 383 (695) T protein:vir:78 308 LRTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQF--NTPLSGLDALQA 383 (695) T ss_pred HHHHhHHHHHHHhhhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEec-CCcceEEE--ecccCCHHHHHH Confidence 8876555443322111211 1112111 111100 0111122222222231 11235544 455566777777 Q ss_pred HHHHHHHHHhCCCchh-cccccccc-chHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccc Q lcl|Aclame:pro 347 HFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFELANAGALFDDGKPLFT 423 (508) Q Consensus 347 ~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~ 423 (508) .+..++...++++... ||...+|. +|++.=...| |..+..+ ++.++..|+.|+..|..- .. T Consensus 384 qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnY---YD~I~s~Qe~~L~p~L~rl~~ii~rS--~~----------- 447 (695) T protein:vir:78 384 QAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVW---YDYVRAYQRNALQQLMNDVIVMIQLS--LF----------- 447 (695) T ss_pred HHHHHHHhhhcCchhhhhccCCccccccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--hc----------- Confidence 7777787778776654 66666675 6665433344 4444443 467888888887765322 11 Q ss_pred cccccCcceEEEEeC--CCccCCHHHH-----HHHHHHHHhCCCCCHHHHHHhcC-----CCCH-HHHHHHHHHHHHhcc Q lcl|Aclame:pro 424 LDSASQPLDIECHFD--DGVFVNKDKQ-----LEEDAKVLAIGALSKQTFLQRNY-----GMTD-EQAAEELAKIQSEAP 490 (508) Q Consensus 424 ~~~~~~~~ei~i~f~--d~i~~d~~~e-----~~~~~~~~~~Gi~s~et~l~~~~-----~~~d-eea~~e~~ri~~E~~ 490 (508) |.. +.++++.|+ ..+...+.++ ++.+..++..|+|+....+.+.- +... .+++ +.+ T Consensus 448 G~i---dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~--------d~p 516 (695) T protein:vir:78 448 GAV---DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDAN--------DDP 516 (695) T ss_pred CCC---CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccc--------cCC Confidence 111 236888888 3333322222 23344555678888777665421 1100 0010 011 Q ss_pred CCCCCC-----------cccccCCCCCCC Q lcl|Aclame:pro 491 TDTFEG-----------GRSAILNGGDGE 508 (508) Q Consensus 491 ~~~~~~-----------~~~~~~~~~~g~ 508 (508) .....+ ...++.-|..|. T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (695) T protein:vir:78 517 GVPADDDIDGVLTYVQRLAEGGDTGAPGG 545 (695) T ss_pred CcCccchhhhhHhhhcCcccccccCCCCC Confidence 100111 011111111111 No 208 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=94.46 E-value=0.0044 Score=33.53 Aligned_cols=331 Identities=13% Similarity=0.084 Sum_probs=128.8 Q ss_pred HHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEE Q lcl|Aclame:pro 84 IASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYP 156 (508) Q Consensus 84 ~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~P 156 (508) +|++ |+.+.-++ +..+.-+..+|.. | ....-.+..+...+..|.+++.+..+. |.+ .+-.++|+.+-+ T Consensus 1 ia~l----p~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~ 75 (348) T protein:vir:93 1 MASL----PLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (348) T ss_pred Cccc----ceEeEecC-cCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEE Confidence 1111 12221000 0011111122210 1 111123334556677898888777654 443 455666666554 Q ss_pred EEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecC Q lcl|Aclame:pro 157 LQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISG 236 (508) Q Consensus 157 i~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g 236 (508) +..+++.. ..|+ ++ ...| ..+. ++. .+ T Consensus 76 ~~~~~~~~-----------------~~y~-~~----~~~g------------------~~~~---~~~-----~e----- 102 (348) T protein:vir:93 76 LIENQSRE-----------------LYYS-IH----AATG------------------NKLI---VHN-----MD----- 102 (348) T ss_pred EEeCCCcE-----------------EEEE-EE----cCCC------------------eEEE---Ecc-----cc----- Confidence 32222211 0111 00 0001 0000 000 00 Q ss_pred CCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcc-cce Q lcl|Aclame:pro 237 LQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTE-QNV 315 (508) Q Consensus 237 ~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~~~ 315 (508) ..+++.+.+. +...|+|.+.-+...++..+.+-......+..+..-++.+...+ +++....+... ... T Consensus 103 -----iih~r~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l--~~e~~~~~~~~~~~~ 171 (348) T protein:vir:93 103 -----MLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNV--STEKRQQVLEDFKQY 171 (348) T ss_pred -----EEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCC--CHHHHHHHHHHHHHH Confidence 1234322111 23358887777766665444332221222111111111111111 11100000000 000 Q ss_pred Ee---eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 316 YV---GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYL 391 (508) Q Consensus 316 ~~---~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~ 391 (508) +. ++..- +++..++.++......++.+..+...+.|....|++|..++...++. .++.+.... T Consensus 172 ~~n~~~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~~~~------------ 238 (348) T protein:vir:93 172 YEENGGILFQ-EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRF------------ 238 (348) T ss_pred hhcCCCeeec-CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH------------ Confidence 10 00000 12223555554444446677777778899999999999887654432 222221111 Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcC Q lcl|Aclame:pro 392 TMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNY 471 (508) Q Consensus 392 ~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~ 471 (508) .++.+|..++..|-...+. .++.... ......+.|+++.-+..|.++.++...+++.+|+|+.-+++... T Consensus 239 -~~~~~l~P~~~~ie~~l~~-~l~~~~~-------~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~- 308 (348) T protein:vir:93 239 -YLQHTLLPIVKQYEEEFNR-KLLTKTD-------REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE- 308 (348) T ss_pred -HHHHHHHHHHHHHHHHHHH-hhCCccc-------ccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh- Confidence 1222333333332211111 0111100 01123466666666677999999999999999999999998753 Q ss_pred CCCHH-HHHHHHHHHHHhccCCCCCCccc----ccCCCCCC Q lcl|Aclame:pro 472 GMTDE-QAAEELAKIQSEAPTDTFEGGRS----AILNGGDG 507 (508) Q Consensus 472 ~~~de-ea~~e~~ri~~E~~~~~~~~~~~----~~~~~~~g 507 (508) |+.+- ..++-+-. ..-.+.+.....+. |..++.+| T Consensus 309 g~~p~~ggD~~~~~-~n~~~~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 309 DLPPVEGGDKPLIS-GDLYPIDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred CCCCCCCcCeEeec-ccccccccchhhcccccCCCCCcCCC Confidence 44321 11110100 00000011110000 11111222 No 209 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=93.99 E-value=0.0057 Score=32.88 Aligned_cols=384 Identities=13% Similarity=0.085 Sum_probs=150.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) |+++.|+|+.+-..... .+ + +. ...|..| .+. .+..+.... .....-- T Consensus 4 ~~~~~~~k~~~~~~~~~----~~---~--------~~-----~~~~~~~-~~~----~~~~v~~~~----a~~~~~V~~c 54 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWID----QS---A--------SK-----LYDFSPW-KNK----SFWGVINNT----LETNETIFSA 54 (409) T ss_pred ccchhhhhhHHhhhhhc----cc---c--------cc-----ccccccc-cCc----cccccchhh----HhhhHHHHHH Confidence 88999888875211110 00 0 10 0001111 111 000000000 0000111 Q ss_pred -HHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEE Q lcl|Aclame:pro 78 -KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWV 149 (508) Q Consensus 78 -~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v 149 (508) ..|++..|++ |+.+--..+ ..+..+..+|.. | .-..-...++...+..|.+++.+..+. |+ ..+-.+ T Consensus 55 i~~ia~~ia~l----p~~~~~~~~-~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l 129 (409) T protein:vir:96 55 ITKLSNSMASL----PLKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLL 129 (409) T ss_pred HHHHHHhhhhC----ceEEeeccc-ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEE Confidence 2344444443 333321111 111122233321 1 122234556677788899988777664 44 355567 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-++..+.+.. .+|+ +. ...|..+ .|.. T Consensus 130 ~~~~v~v~~~~~~~~-----------------~~y~-~~----~~~g~~~----~~~~---------------------- 161 (409) T protein:vir:96 130 NPDVVEMLIENQSRE-----------------LYYS-IH----AATGNKL----IVHN---------------------- 161 (409) T ss_pred cCceeEEEEeCCCcE-----------------EEEE-EE----cCCceEE----EEcc---------------------- Confidence 777765542222111 0111 00 0001000 0000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTF 309 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~ 309 (508) .+ ..+++.+.+ .+...|+|.+.-+...++...............+..-++.+...+ +++....+ T Consensus 162 ~e----------vih~r~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l--~~e~~~~~ 225 (409) T protein:vir:96 162 MD----------MLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNV--STEKRQQV 225 (409) T ss_pred cc----------EEEeCCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCC--CHHHHHHH Confidence 00 123332111 123358888777766665443322222221111111122211111 01100000 Q ss_pred Ccc-cceEe---eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHH Q lcl|Aclame:pro 310 DTE-QNVYV---GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTY 384 (508) Q Consensus 310 ~~~-~~~~~---~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~ 384 (508) ... ...+. ++..- +++..++.++......++.+..+...++|....|++|..++....+. .++++.... T Consensus 226 ~~~~~~~~~n~g~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~----- 299 (409) T protein:vir:96 226 LEDFKQYYEENGGILFQ-EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRF----- 299 (409) T ss_pred HHHHHHHhhcCCCeeec-CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH----- Confidence 000 00000 00000 12223555555555556777777778899999999999998654432 233222211 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ 464 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e 464 (508) .++.+|..++..|-...+.. ++... .....+.+.++.+.-+..|..+.++.+.+++..|+|+.- T Consensus 300 --------f~~~~l~P~~~~ie~~l~~~-Ll~~~-------~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~N 363 (409) T protein:vir:96 300 --------YLQHTLLPIVKQYEEEFNRK-LLTKT-------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIN 363 (409) T ss_pred --------HHHHHHHHHHHHHHHHHHhh-cCCcc-------cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHH Confidence 12223333333322111110 11100 001123455665665667889999999999999999999 Q ss_pred HHHHhcCCCCHH-HHHHHHHHHHHhc-cCCCCCCcccccCC----CCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDE-QAAEELAKIQSEA-PTDTFEGGRSAILN----GGDG 507 (508) Q Consensus 465 t~l~~~~~~~de-ea~~e~~ri~~E~-~~~~~~~~~~~~~~----~~~g 507 (508) +++... |+.+- ..++-+- .... +.+.....+....| ..+| T Consensus 364 E~R~~~-g~~pi~ggD~~~~--~~n~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:96 364 DIREWE-DLPPVEGGDKPLI--SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred HHHHHh-CCCCCCCcceeee--cccccccccchhhcccccCCCCCcCCC Confidence 988753 43321 1111110 0010 11111111111111 1112 No 210 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=93.96 E-value=0.0058 Score=32.84 Aligned_cols=419 Identities=12% Similarity=0.064 Sum_probs=157.6 Q ss_pred CChH-----HH-HHHHHHHHHH-hhh------hhhh--hHHhhccccccC-CHHHHHHHHHHHH----------HhcCCC Q lcl|Aclame:pro 1 MGLI-----QR-IKDLFWKGAA-ATG------VTGS--LSKITDDPRISI-DPDEYVRIQTDLD----------YYSDKL 54 (508) Q Consensus 1 m~~~-----~~-ik~~~~~~~~-~~~------~~~~--~~~~~~~~~i~~-~~~~~~~i~~~~~----------~Y~g~~ 54 (508) -.+- +- --+|-|++.. .+- ...+ |-+..+ .++.. ++-..++...... ||.+. T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 108 (695) T protein:vir:36 31 ATIATAAAAQPVPADFARRGALNALDAAPVVEPSPSLRLARQFE-VDVSNYTPRERRAASYALDFNGTSMDALSFVTSS- 108 (695) T ss_pred hhhhhhccccccchhhhhcccccccccccccCCCcccccceece-ecccccCccccchhhhhhcccccccccchhhhcc- Confidence 0000 00 0011111110 000 0000 000000 11110 1111111111111 22211 Q ss_pred ccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEeeC--------------------CcHHHHHHHHHHHHhh Q lcl|Aclame:pro 55 QYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVK--------------------DNNEADKFLNDVLEDN 114 (508) Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~--------------------~~~~~~~~l~~~l~~n 114 (508) -++.|....- ..-++....++...|.-+..+=..++.. +.++ -+.|+.-+++- T Consensus 109 ~F~Gy~~la~------laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dq-ik~L~~e~erL 181 (695) T protein:vir:36 109 GFPGFPTLVL------LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ-LKQINDEIERL 181 (695) T ss_pred CcchHHHHHH------HhhccchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHH-HHHHHHHHHHH Confidence 0000000000 0001112233444444443332222211 1122 35688888888 Q ss_pred hHHHHHHHHHHHHhhcCCEEEEEEEeCCe--eEEEEEc-CCeEEEEEEcCCCeEEEEEEEEEEEe------------ecC Q lcl|Aclame:pro 115 DFKNKFEEALEKGVALGGFAMRPYIDGNH--IKIAWVR-ADQFYPLQSNTNDISEAAIASRTQRT------------ESN 179 (508) Q Consensus 115 ~f~~~~~~~~~~a~~~G~~~~~~~~d~~~--~~i~~v~-a~~~~Pi~~d~~~~~~~~f~~~~~~~------------~~~ 179 (508) +.+..+++.++.+-.+|+++...-.++.. ..-..++ +.. ..-|.+.....+.++... +-. T Consensus 182 ~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~-----I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfg 256 (695) T protein:vir:36 182 RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT-----VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFY 256 (695) T ss_pred HHHHHHHHHHHhhccccceEEEEEeccCcccccccccccccc-----ccCcceeeeEeecccccccchhhhccchhhccC Confidence 89999999999999999998655554321 1000000 001 001222222222221110 000 Q ss_pred CcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcC Q lcl|Aclame:pro 180 QTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPL 259 (508) Q Consensus 180 ~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~spl 259 (508) +.++|.. .|++|--+.+ +.+.|. |+.-.+|+. . +-. T Consensus 257 kP~~y~V--------------------------~G~kIH~SRL---------~~f~g~--plPd~LKp~-y------~~~ 292 (695) T protein:vir:36 257 KPSTWWM--------------------------IGTEVHATRL---------HTIVSR--PVGDMLKPT-Y------SFA 292 (695) T ss_pred CCceEEE--------------------------eceEEeeeeE---------EEecCC--Cchhhhhcc-c------ccC Confidence 1112211 0111111111 011111 111112211 1 123 Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcC--CCCCCc------cCCcccceEeeecCCCCCCCcceE Q lcl|Aclame:pro 260 GLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRF--DDEHKP------TFDTEQNVYVGVLSDDNNGLGVKD 331 (508) Q Consensus 260 G~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~ 331 (508) |+|....+.+-+++.+.+-.....-+....-.++ -.+|... ++.... .+..-+..+..+..|. +...++. T Consensus 293 GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~l-k~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq 370 (695) T protein:vir:36 293 GISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQ 370 (695) T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEec-CCcceEE Confidence 8999999999999988866555443321111111 1112111 111100 0111122222222231 1123554 Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHhCCCchh-cccccccc-chHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 332 MTTPIRTVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFEL 408 (508) Q Consensus 332 ~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l 408 (508) + ++.....-..+..+..++...++++... ||...+|. +|++.=...| |..+..+ ++.++..|+.|+..|..- T Consensus 371 ~--stslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnY---YD~I~s~Qe~~L~p~L~rl~~ii~rS 445 (695) T protein:vir:36 371 F--NTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVW---YDYVRAYQRNALQQLMNDVIVMIQLS 445 (695) T ss_pred E--ecccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4 4555667777777777787777776654 66666675 6665333344 4444443 467888888887765322 Q ss_pred HhhhccccccccccccccccCcceEEEEeC--CCccCCHHHH-----HHHHHHHHhCCCCCHHHHHHhcC-----CCCH- Q lcl|Aclame:pro 409 ANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQ-----LEEDAKVLAIGALSKQTFLQRNY-----GMTD- 475 (508) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e-----~~~~~~~~~~Gi~s~et~l~~~~-----~~~d- 475 (508) .. |.. +.++++.|+ ..+...+.++ ++.+..++..|+|+....+.+.- +... T Consensus 446 --~~-----------G~i---dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~ 509 (695) T protein:vir:36 446 --LF-----------GAV---DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) T ss_pred --hc-----------CCC---CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccc Confidence 11 111 236888888 3333322222 23344555678888777665421 1100 Q ss_pred HHHHHHHHHHHHhccCCCCCC-----------cccccCCCCCCC Q lcl|Aclame:pro 476 EQAAEELAKIQSEAPTDTFEG-----------GRSAILNGGDGE 508 (508) Q Consensus 476 eea~~e~~ri~~E~~~~~~~~-----------~~~~~~~~~~g~ 508 (508) .+++ +.+....++ ...++.-|..|. T Consensus 510 ~D~~--------d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (695) T protein:vir:36 510 LDAN--------DDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG 545 (695) T ss_pred cccc--------cCCCcCccchhhhhHhhhcCcccccccCCCCc Confidence 0010 111100111 011111111111 No 211 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=93.56 E-value=0.0071 Score=32.35 Aligned_cols=444 Identities=12% Similarity=0.104 Sum_probs=187.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHH--HH------HHHHHhcCCCccccCccCCCccc-cccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVR--IQ------TDLDYYSDKLQYIHYQASDGIKK-KRLK 71 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--i~------~~~~~Y~g~~~~~~~~~~~~~~~-~~~~ 71 (508) |+|.+-.+-|.+.--... .+.+++-. .-++.+...-.+ |+ .+-.+|....+. .. ...+.+. -+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~--~~~~~~~~--~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~-~~-~~~~~~~LI~~Y 74 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEY--DERLKQGH--ESIATPKKDDGATEIEAREGESSYNALMQQFFGI-DN-NISGTKDLINTY 74 (516) T ss_pred CCchHhcccccchhhHHH--HhhhcCCC--CcccCCCCccCceeeecCcccccccceeeeeecc-cC-ccccHHHHHHHH Confidence 888776555443211110 11111000 000000000000 00 000111111110 00 0000000 0000 Q ss_pred cc---cchHHHHHHHHHHhhh-----cCcceEeeCCc---H----HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEE Q lcl|Aclame:pro 72 NT---INMAKTAARRIASVVF-----NEKAEIHVKDN---N----EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMR 136 (508) Q Consensus 72 ~~---~n~~~~iv~~~A~ll~-----~e~~~i~~~~~---~----~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~ 136 (508) .+ .+=....++..++=+. .+|+++.+++- + ...+..+.++.--+|.++..+.+.....-|..+|| T Consensus 75 R~ma~~pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fh 154 (516) T protein:vir:10 75 RQLTNNPEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFH 154 (516) T ss_pred HHhhhccchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEE Confidence 00 1111223333332221 23566665442 1 12334556666668999999999999999999999 Q ss_pred EEEeC---CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEE-EEEEEEEEeCCceEE-EEEEEEecCCcc Q lcl|Aclame:pro 137 PYIDG---NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYY-TLLEFHQWQDNGSYQ-ITNELYKSDSPD 211 (508) Q Consensus 137 ~~~d~---~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~y-t~lE~h~~~~~g~~~-I~~~ly~~~~~~ 211 (508) -+.|+ |-..+..++|.++-++..- .+.+.++...+ ...|++.+..+..++ +.-+.|.. + T Consensus 155 Kiid~~k~GI~elr~lDPr~i~~vR~i-------------~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~---~ 218 (516) T protein:vir:10 155 KIMPNPKEGIVELRRLDPRHVEYYREI-------------VTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEP---N 218 (516) T ss_pred EEecCcccceeeeeeeCCcceeeEEee-------------ecccCcchhhhhceeeeeeeecCccceeccccccCC---C Confidence 88885 5567889999998876321 11111111010 011222111000111 00011110 0 Q ss_pred ccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--HHHHHhcc Q lcl|Aclame:pro 212 IVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQ 289 (508) Q Consensus 212 ~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~ 289 (508) + +-++|-+.+ .+..+|+-- . |. ..=+|-+.+|.--...|=-.-+.+ .+--|.-. T Consensus 219 ~-~ikI~~daI--------~y~hSGl~d-------~---~~-----~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPe 274 (516) T protein:vir:10 219 T-RIKIPRSAI--------VYAHSGLQD-------C---SD-----RGIVGYLHNAVKPANQLKLLEDALVIYRITRAPE 274 (516) T ss_pred C-ceecchhhe--------eeeecCccc-------C---CC-----CceeceehhhhHhHHhhHHHHhhHHHHhhhcccc Confidence 0 111111110 000112110 0 00 001233344433333332222222 22234555 Q ss_pred ceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCcceEeeccCCHHHH Q lcl|Aclame:pro 290 KHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTTPIRTVQY 341 (508) Q Consensus 290 ~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~dir~e~~ 341 (508) .|||- .- .+++ +|..++.. .+++.+..+. -+++.+.-|+++..--.. .- T Consensus 275 RRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev--~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnl-ge 351 (516) T protein:vir:10 275 RRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTV--KNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTM-GE 351 (516) T ss_pred ceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee--ccchhhhhhHhhhcccccCCCcccceeeccccCCc-Ch Confidence 66663 11 1110 24433332 1222222221 122233346665543222 23 Q ss_pred HHHHHHHHHHHHHHhCCCchhccccccc-c--chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc Q lcl|Aclame:pro 342 KDAIDHFIKEFEVQIGLSTGTFSYSNDG-V--KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDG 418 (508) Q Consensus 342 ~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~ 418 (508) +..++-+.+.++...+.+.+-+..+++. . .-++||.-..-....-+..++..|..-+.++++.=|.|-. .+. T Consensus 352 m~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKg---Iit-- 426 (516) T protein:vir:10 352 MDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKK---IIL-- 426 (516) T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCC-- Confidence 4667777888889888888877655442 2 3456776665555556666666666666666665443311 111 Q ss_pred ccccccccccCcceEEEEeCC--CccCCHHHHHHHHH-----HHH--hCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 419 KPLFTLDSASQPLDIECHFDD--GVFVNKDKQLEEDA-----KVL--AIGALSKQTFLQRNYGMTDEQAAEELAKIQSEA 489 (508) Q Consensus 419 ~~~~~~~~~~~~~ei~i~f~d--~i~~d~~~e~~~~~-----~~~--~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~ 489 (508) .-.+..... .|.++|.. ...+=.+.++-+.+ ++. -+..+|.+++.++....||+|.+++-++|++|. T Consensus 427 --~eeW~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~ 502 (516) T protein:vir:10 427 --ESEWEEQIN--NIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQIEKEA 502 (516) T ss_pred --HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhHHHHHHHHHHHhh Confidence 111111112 34455543 33333333322211 111 235789999999999999999999999999997 Q ss_pred cCCCCC-CcccccC Q lcl|Aclame:pro 490 PTDTFE-GGRSAIL 502 (508) Q Consensus 490 ~~~~~~-~~~~~~~ 502 (508) ...-.. ++...-+ T Consensus 503 ~~~~~~~p~~e~~f 516 (516) T protein:vir:10 503 NVKRFQNPENEDDF 516 (516) T ss_pred hCCCCCCCCccccC Confidence 653221 2212222 No 212 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=93.46 E-value=0.0075 Score=32.23 Aligned_cols=388 Identities=14% Similarity=0.120 Sum_probs=156.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhh---HH-hhccccccCCHHHHHHHHHH----HHHhcCCCccccCccCCCcccccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSL---SK-ITDDPRISIDPDEYVRIQTD----LDYYSDKLQYIHYQASDGIKKKRLKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~i~~~----~~~Y~g~~~~~~~~~~~~~~~~~~~~ 72 (508) =+++..=.++++....+-.....+ .+ +..|.--.+.+.... +... .+.|+ .. . . T Consensus 3 ~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~-il~~~~~~~~~y~---------~m-----~---~ 64 (491) T protein:vir:79 3 KGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDP-VLKALGKDIRVYR---------EL-----R---A 64 (491) T ss_pred CeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhH-HHhhccCCHHHHH---------HH-----h---h Confidence 011111111111100000000000 00 001111111111111 1100 01110 00 0 0 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CCee---EE Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVK-DNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID--GNHI---KI 146 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~-~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~~~---~i 146 (508) ..-+...+-. -..-|++.+..|... ++++..+++.+++++-+|...+..++ .|..+|-+++-..|+ +|.+ ++ T Consensus 65 D~~i~s~l~~-Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 142 (491) T protein:vir:79 65 DAHVGGCVRR-RKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDV 142 (491) T ss_pred ChHHHHHHHH-HHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEee Confidence 0123333333 334455666777653 33445578999998878888777665 588899888877775 3332 34 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .++++..|.. ...+++ .++ . .+...-|.++ T Consensus 143 ~~r~~~~f~~--d~~~~l------------------~l~-----~----------------~~~~~~g~~l--------- 172 (491) T protein:vir:79 143 VGKPADWFVY--DPENQL------------------RFR-----S----------------KEHWVQGEEL--------- 172 (491) T ss_pred eeecccceee--ccCCce------------------EEe-----e----------------cCCCCCceee--------- Confidence 4555544331 001111 000 0 0000001111 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCC- Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDE- 304 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~- 304 (508) |++.|+- ...+...++|+|.|.+..|....--=+..+..|+.=+ +.|.|..++ +++.. T Consensus 173 -------------p~~k~i~--~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~ig-----ky~~~a 232 (491) T protein:vir:79 173 -------------PARKFLV--PRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG-----KHPRSA 232 (491) T ss_pred -------------cCCCeEE--EEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEE-----ecCCCC Confidence 1111110 0122334678899999987654433333344444434 457765544 22211 Q ss_pred C---CccCCcc-----cceEeeecCCCCCCCcceEeeccC---CHHHHHHHHHHHHHHHHHHhCCCchhccccccccchH Q lcl|Aclame:pro 305 H---KPTFDTE-----QNVYVGVLSDDNNGLGVKDMTTPI---RTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTA 373 (508) Q Consensus 305 ~---~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~di---r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TA 373 (508) . +..+-.. ..-...+. .+..|+.++... ..+.|.+.++.+=++|+..+ ++...-++.+++-+.| T Consensus 233 ~~~ek~~l~~al~~~~~~a~~viP----~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i-LGqtlTt~~~gs~a~~ 307 (491) T protein:vir:79 233 SDAETNLLLDRLEDMVQDAVAVIP----DDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL-LGQNQTTEATSTRASA 307 (491) T ss_pred CHHHHHHHHHHHHHHhcCeEEEec----CCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH-hhhhhccCcccchhhH Confidence 1 1110000 00111111 122355554332 22345555555555554433 3322112222222212 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHH Q lcl|Aclame:pro 374 TEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDA 453 (508) Q Consensus 374 tei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~ 453 (508) ++-.. -....+..-.+.+...|.+||+-++.+.. + . ...+.+.|.+.- ...+..++.+. T Consensus 308 -~vh~~--v~~~i~~~D~~~i~~tln~li~~l~~~N~-------~--------~--~~~p~f~~~e~e-e~~~~~a~~~~ 366 (491) T protein:vir:79 308 -QAGLE--VTDDIRDGDKAIVVEAMNMLIRWICDLNF-------D--------G--AARPVFDMWEQE-QVDEIQAGRDE 366 (491) T ss_pred -HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C--------C--CCcceEeecCcC-chhHHHHHHHH Confidence 22211 12333444566677888888887665421 1 0 012346665532 22244566778 Q ss_pred HHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 454 KVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 454 ~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +++..|+--.+.++.+.+|+++.+..++.......+ ..+..........++ T Consensus 367 ~L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~ 417 (491) T protein:vir:79 367 KLTRAGARFTPAYFKRAYNLQDGDLDERPLPVSAVD----AVGAASFAEFEAPDQ 417 (491) T ss_pred HHHhCCCccCHHHHHHHhCCCCCCCCccccCcCccc----ccccccccccCCCCC Confidence 899999866777888888986533222211111111 111111111111111 No 213 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=93.37 E-value=0.0078 Score=32.14 Aligned_cols=354 Identities=14% Similarity=0.120 Sum_probs=114.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcc--ccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDD--PRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~ 78 (508) ||+|.+++.+-+... . ...+..+.- ..+++.. ..+. .--. T Consensus 1 Mg~f~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~---~~v~------------------------------~~i~ 42 (378) T protein:vir:16 1 MNLFGKVVSFSRGKL-N----NDTQRVTAWQNEAVEYTS---AFVT------------------------------NIHN 42 (378) T ss_pred Cccchhhhhhhcccc-c----CCcceeeecccchhhHHH---HHHH------------------------------HHHH Confidence 999999998533211 1 111111110 0000000 0000 0112 Q ss_pred HHHHHHHHhhhcCcceE-eeCCc--------HHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEI-HVKDN--------NEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHI 144 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i-~~~~~--------~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~ 144 (508) .|++..|++ |+.+ .-..+ ...+.-|..+|.. | ....-....+...+-.|.+++.+.+|+..- T Consensus 43 ~Ia~~iA~l----~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g 118 (378) T protein:vir:16 43 KIANEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTG 118 (378) T ss_pred HHHhhhhhC----ceeEEEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCc Confidence 233333333 2211 00000 0011122333321 1 112223334556677788887666664211 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~ 224 (508) ++ +++...++. ..|..=| -.++.+- |.... | .-++...-+ T Consensus 119 ~~--------~~l~~~~~~------------------~~~~~~d--------iih~r~~-~~~~~----~-~s~l~~~~~ 158 (378) T protein:vir:16 119 EL--------LDLLFADDK------------------KEYKPEE--------LVRLTSP-FYINE----D-TSILDNALA 158 (378) T ss_pred eE--------EEEEecCCe------------------eEecccc--------eEEecCc-cCccc----h-hHHHHHHHH Confidence 11 111111111 0110000 0011000 00000 0 000000000 Q ss_pred ccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCC Q lcl|Aclame:pro 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDE 304 (508) Q Consensus 225 ~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~ 304 (508) .+... ...| .+. ++++.|. .++. +..+. ...++...++. ....+.. T Consensus 159 --~i~~~-~~~~--~~~-g~l~~~~----------~l~~-~~~~~-------~~~~~~~~~~~----------~~~~~~~ 204 (378) T protein:vir:16 159 --SIQTK-LEQG--KLR-GLLKINA----------FLDI-DNTQE-------YREKALTTIKN----------MQEGSSY 204 (378) T ss_pred --HHHHH-HhcC--ccc-eeeEeCC----------cCCH-HHHHH-------HHHHHHHHHHH----------hhccccc Confidence 00000 0001 010 1111110 0000 00111 11122111111 0000000 Q ss_pred CCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 305 HKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY 384 (508) Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~ 384 (508) ++..+ . +++..++.++.+....+ +..++.+.++|....|++|..++. |..|... ..-.. T Consensus 205 g~~~v-----------l--~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~g------~~~e~~~-~~f~~ 263 (378) T protein:vir:16 205 NGLTP-----------V--DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TASQEQQ-IYFYN 263 (378) T ss_pred ccceE-----------c--CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhcC------CchHHHH-HHHHH Confidence 11100 0 11112333333322222 344556667899999999987731 1112111 11111 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ 464 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e 464 (508) .++.-....++.+|..-+ +...... .+........+.|+++.-...|.++.++...+++..|+|+.- T Consensus 264 ~tl~P~~~~ie~~l~~kL------------l~~~e~~-~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~N 330 (378) T protein:vir:16 264 STIIPLLIQLEKELTYKL------------ISTNRRR-VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQN 330 (378) T ss_pred HHHHHHHHHHHHHHHhhc------------CChhhhh-hhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHH Confidence 223333333333332211 1000000 000000123466777887888999999999999999999999 Q ss_pred HHHHhcCCCCH-HHHHH-----HHHHHHHhccCCCCCCcccccCCC--CCCC Q lcl|Aclame:pro 465 TFLQRNYGMTD-EQAAE-----ELAKIQSEAPTDTFEGGRSAILNG--GDGE 508 (508) Q Consensus 465 t~l~~~~~~~d-eea~~-----e~~ri~~E~~~~~~~~~~~~~~~~--~~g~ 508 (508) +++... |+.+ +..++ -+..+ ++.. ..+++..+.-.+ .++| T Consensus 331 E~R~~~-g~~p~~ggD~~~~~~n~~~~--~~~~-~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 331 QLLVKM-GEQPIEGGDVYIANLNAVAV--KNLS-DLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHHHHh-CCCCCCCCCeEeeccccccc--cchh-hhcCccCCCCCCCCCCCC Confidence 988753 3222 11111 01110 0000 011111111111 2222 No 214 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=93.33 E-value=0.008 Score=32.09 Aligned_cols=382 Identities=13% Similarity=0.080 Sum_probs=159.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) |.+.+ +| + ..+-++|.. .-|..+..+-.-... ..|.... ....+..| T Consensus 1 m~~~~----~~-------------~----~~~~~~s~~-----~~w~~~~~~~~~~~~---~~g~~vt-~~~al~~~~v~ 50 (421) T protein:vir:10 1 MFIPQ----MF-------------E----GKKRSVSGG-----GFWEAMLGGVRSSHS---KAGVMIT-PETALALSAVR 50 (421) T ss_pred CCCcc----hh-------------c----ccccccCcc-----hhhHHHhhhhccCcc---cCCceec-hHHhhccHHHH Confidence 33222 22 1 112223321 124334332211110 0111100 00112222 Q ss_pred ---HHHHHHHHHhhhcCcceEee-C-CcH--H-HHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce Q lcl|Aclame:pro 78 ---KTAARRIASVVFNEKAEIHV-K-DNN--E-ADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-NH 143 (508) Q Consensus 78 ---~~iv~~~A~ll~~e~~~i~~-~-~~~--~-~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~ 143 (508) ..|++..|++ |+.+-- + +.. . .+--+..+|. -| ....-.+..+...+..|.+++.+..+. |+ T Consensus 51 ~~i~~Ia~~iA~l----p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~ 126 (421) T protein:vir:10 51 ACVTLLAESVAQL----PVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGY 126 (421) T ss_pred HHHHHHHHhhccC----ceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc Confidence 4455555543 444321 1 110 0 0111233332 11 122334455667788898887777664 45 Q ss_pred e-EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccc Q lcl|Aclame:pro 144 I-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTL 222 (508) Q Consensus 144 ~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~ 222 (508) + .+-.++|+.+-|+..+++. .+|. +... |..+|..+ T Consensus 127 ~~~L~~l~~~~v~v~~~~~g~------------------~~y~------~~~~------------------g~~~~~~e- 163 (421) T protein:vir:10 127 PKELIPINPKKVIVLKGPDGM------------------PYYE------IPEI------------------GETLPMRM- 163 (421) T ss_pred EEEEEEecCceEEEEECCCce------------------EEEE------EcCC------------------CcEEchhh- Confidence 4 4666778877764222111 1111 0000 11111000 Q ss_pred ccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHh Q lcl|Aclame:pro 223 PVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGML 299 (508) Q Consensus 223 ~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~ 299 (508) +.+++.+-. +...|+|.+.-+...|+.....-....+-|+. +++.-++ |..+- T Consensus 164 -------------------iih~~~~~~-----d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~ 219 (421) T protein:vir:10 164 -------------------MHHVKVFSL-----DGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAP 219 (421) T ss_pred -------------------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccC Confidence 123332211 12458898888877776544333333444565 4555444 11110 Q ss_pred cC-CCCCCccCCc-ccceEeeecC-CC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-c Q lcl|Aclame:pro 300 RF-DDEHKPTFDT-EQNVYVGVLS-DD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-K 371 (508) Q Consensus 300 ~~-~~~~~~~~~~-~~~~~~~~~~-~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~ 371 (508) .. +++....+.. -.+.|.+... +. +++..++.++......++.+..+...++|....|++|..+++...+. . T Consensus 220 ~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~s 299 (421) T protein:vir:10 220 AIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNN 299 (421) T ss_pred ccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccc Confidence 00 0000000100 0111211110 00 22334666666556667777778888899999999999988765432 2 Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 372 TATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE 451 (508) Q Consensus 372 TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~ 451 (508) ++++....+ ...++.-+...++.+|..- ++.... .....+.|+++.-+..|..+.++. T Consensus 300 n~e~~~~~f--~~~tl~P~~~~ie~~ln~k------------L~~~~~--------~~~~~v~fd~~~l~~~d~~~~~~~ 357 (421) T protein:vir:10 300 NIEHQGLQF--VMYTLLAWLKRHEGALQRD------------LLLPSE--------RRDLYIEFNVSGLLRGDQKSRYES 357 (421) T ss_pred cHHHHHHHH--HHHHHHHHHHHHHHHHhhh------------ccCccc--------cCCeEEEEechhhhccCHHHHHHH Confidence 222211111 1112222333333332221 111100 112346677777667899999999 Q ss_pred HHHHHhCCCCCHHHHHHhcCCCCH-HHHHHHHHHHH---HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 452 DAKVLAIGALSKQTFLQRNYGMTD-EQAAEELAKIQ---SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 452 ~~~~~~~Gi~s~et~l~~~~~~~d-eea~~e~~ri~---~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..+++.+|+|+.-+++... |+++ +...+-+.... .++. .+.++......+++.| T Consensus 358 ~~~~~~~G~~T~NE~R~~~-gl~p~~ggD~~~~~~n~~~~~~~--~~~~~~~~~~~~~e~d 415 (421) T protein:vir:10 358 YALGRQWGWLSVNDIRRME-NLPPIAGGDKYLTPLNMVDSAQI--IPGDKKPTAQQMAEID 415 (421) T ss_pred HHHHHhCCCcCHHHHHHHh-CCCCCCCcceeeecccccccccc--ccCCCCcccccCcccc Confidence 9999999999999998753 3322 11111111000 0111 1111111122222233 No 215 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=93.25 E-value=0.0082 Score=32.01 Aligned_cols=414 Identities=10% Similarity=0.052 Sum_probs=158.1 Q ss_pred CC-------hHHHHHHHHHHHHHhhhh--hhhhHHhhccccccC-CHHHHHHHHHHH----------HHhcCCCccccCc Q lcl|Aclame:pro 1 MG-------LIQRIKDLFWKGAAATGV--TGSLSKITDDPRISI-DPDEYVRIQTDL----------DYYSDKLQYIHYQ 60 (508) Q Consensus 1 m~-------~~~~ik~~~~~~~~~~~~--~~~~~~~~~~~~i~~-~~~~~~~i~~~~----------~~Y~g~~~~~~~~ 60 (508) |. -+...|- ..--.. ..-|.+..+ .++.. ++-..++..... .||.+. -++.|. T Consensus 41 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~F~Gy~ 113 (694) T protein:vir:10 41 VPADFARRGALNALDA-----APVAEPSPSLRLARQFE-VDVSNYTPRERRAASYALDFNGTSMDALSFVTSS-GFPGFP 113 (694) T ss_pred ccCCccccccchhhcc-----cccCCCCcchhhhhhcc-ccccCCCccccchhhhhhccCcccccchhhhhcc-CcchHH Confidence 22 1111110 000000 000111111 11111 111111111100 122211 000000 Q ss_pred cCCCccccccccccchHHHHHHHHHHhhhcCcceEeeC--------------------CcHHHHHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 61 ASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVK--------------------DNNEADKFLNDVLEDNDFKNKF 120 (508) Q Consensus 61 ~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~--------------------~~~~~~~~l~~~l~~n~f~~~~ 120 (508) ...- ..-++....++...|.-+..+=..++.. +.++ -+.|..-+++-+.+..+ T Consensus 114 ~la~------laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dq-i~~L~~e~erl~V~~~l 186 (694) T protein:vir:10 114 TLVL------LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ-LKQINDEIERLRIRDAV 186 (694) T ss_pred HHHH------HhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHH-HHHHHHHHHHHHHHHHH Confidence 0000 0001112233444444443332222211 1122 35678888888899999 Q ss_pred HHHHHHHhhcCCEEEEEEEeCCe--eEEEEEc-CCeEEEEEEcCCCeEEEEEEEEEEEe------------ecCCcEEEE Q lcl|Aclame:pro 121 EEALEKGVALGGFAMRPYIDGNH--IKIAWVR-ADQFYPLQSNTNDISEAAIASRTQRT------------ESNQTKYYT 185 (508) Q Consensus 121 ~~~~~~a~~~G~~~~~~~~d~~~--~~i~~v~-a~~~~Pi~~d~~~~~~~~f~~~~~~~------------~~~~~~~yt 185 (508) +++++.+-.+|+++...-.++.. ..-..++ +.. ..-|.+.....+.++... +-.+.++|. T Consensus 187 ~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~-----I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~ 261 (694) T protein:vir:10 187 RTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT-----VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW 261 (694) T ss_pred HHHHHhhccccceEEEEEeecCcccccccccccccc-----ccCcceeeeEeecccccccchhhhccchhhccCCCceEE Confidence 99999999999998655554321 1000000 000 001222222222221110 000111221 Q ss_pred EEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhh Q lcl|Aclame:pro 186 LLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVD 265 (508) Q Consensus 186 ~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~ 265 (508) . .|++|--+.+ +.+.|. |+.-.+|+. . +-.|+|... T Consensus 262 V--------------------------~G~~IH~SRL---------~~f~g~--plPd~LKp~-y------~~~G~Sv~q 297 (694) T protein:vir:10 262 M--------------------------IGTEVHATRL---------HTIVSR--PVGDMLKPT-Y------SFAGISMTQ 297 (694) T ss_pred E--------------------------eceEEeeeeE---------EEecCC--Cchhhhhcc-c------ccCcccHHH Confidence 1 0111111111 011111 111112211 1 123899999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcC--CCCCCc------cCCcccceEeeecCCCCCCCcceEeeccCC Q lcl|Aclame:pro 266 NAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRF--DDEHKP------TFDTEQNVYVGVLSDDNNGLGVKDMTTPIR 337 (508) Q Consensus 266 ~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~dir 337 (508) .+.+-+++.+.+......-+...+-.++ -.+|... ++.... .+..-+..+..+..|. +...++.+ ++. T Consensus 298 ~~~e~V~~~~rT~~~v~~Li~~~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq~--sts 373 (694) T protein:vir:10 298 LAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQF--NTP 373 (694) T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEec-CCcceEEE--ecc Confidence 9999999988876555443322111111 1112111 111100 0111122222222231 11235544 455 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchh-cccccccc-chHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 338 TVQYKDAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSY-LTMVEKAIDELCQSIFELANAGAL 414 (508) Q Consensus 338 ~e~~~~~l~~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~~~~~~l~~~~~~~-~~~~~~al~~li~~i~~l~~~~~~ 414 (508) ....-..+..+..++...+|++... ||...+|. +|++.=...| |..+..+ ++.++..|+.|+..|..- .. T Consensus 374 lSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnY---YD~I~s~Qe~~L~p~L~rl~~ii~rS--~~-- 446 (694) T protein:vir:10 374 LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVW---YDYVRAYQRNALQQLMNDVIVMIQLS--LF-- 446 (694) T ss_pred cCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--hc-- Confidence 5667777777777787778776654 66666675 6665433344 4444443 467888888887765322 11 Q ss_pred ccccccccccccccCcceEEEEeC--CCccCCHHHH-----HHHHHHHHhCCCCCHHHHHHhcC-----CCCH-HHHHHH Q lcl|Aclame:pro 415 FDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQ-----LEEDAKVLAIGALSKQTFLQRNY-----GMTD-EQAAEE 481 (508) Q Consensus 415 ~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e-----~~~~~~~~~~Gi~s~et~l~~~~-----~~~d-eea~~e 481 (508) |.. +.++++.|+ ..+...+.++ ++.+..++..|+++....+.+.- +... .+++ T Consensus 447 ---------G~i---dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~-- 512 (694) T protein:vir:10 447 ---------GAV---DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDAN-- 512 (694) T ss_pred ---------CCC---CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccc-- Confidence 111 236888888 3333322222 23344555678888777665421 1100 0010 Q ss_pred HHHHHHhccCCCCCC-----------cccccCCCCCCC Q lcl|Aclame:pro 482 LAKIQSEAPTDTFEG-----------GRSAILNGGDGE 508 (508) Q Consensus 482 ~~ri~~E~~~~~~~~-----------~~~~~~~~~~g~ 508 (508) +.+.....+ ...++..|..|. T Consensus 513 ------d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (694) T protein:vir:10 513 ------DDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG 544 (694) T ss_pred ------cCCCcCccchhhhhHhhhcCcccccccCCCCc Confidence 111100111 011111111111 No 216 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=93.07 E-value=0.0089 Score=31.83 Aligned_cols=426 Identities=13% Similarity=0.123 Sum_probs=191.9 Q ss_pred CChHHHHHHHHHHHHHhhh--hhhhhHHhhc-c-cc----ccC-----------------CH---HHHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATG--VTGSLSKITD-D-PR----ISI-----------------DP---DEYVRIQTDLDYYSD 52 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~--~~~~~~~~~~-~-~~----i~~-----------------~~---~~~~~i~~~~~~Y~g 52 (508) |+|.+-.+-|.+.--...- ......++.- + .+ |.. ++ ...+-|++++.++ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma-- 78 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLI-- 78 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHh-- Confidence 8887766655542221100 0001111110 0 00 000 00 0111222222221 Q ss_pred CCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 53 KLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDNDFKNKF 120 (508) Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~f~~~~ 120 (508) ..+-....++..++=+. .+|+++.+++-+ ...+..+.++.--+|.++. T Consensus 79 --------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~ 138 (516) T protein:vir:10 79 --------------------NNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKL 138 (516) T ss_pred --------------------hccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhh Confidence 11222223333332221 235566654322 1234456666666899999 Q ss_pred HHHHHHHhhcCCEEEEEEEeC---CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE-EEEEEEEeCCc Q lcl|Aclame:pro 121 EEALEKGVALGGFAMRPYIDG---NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT-LLEFHQWQDNG 196 (508) Q Consensus 121 ~~~~~~a~~~G~~~~~~~~d~---~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt-~lE~h~~~~~g 196 (508) .+.+.....-|..+||-..|+ |-..+..++|.++-++..- ...+.++...+. ..|++.+..+. T Consensus 139 ~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i-------------~~~~~~~~~v~~~~~e~~~Y~~~~ 205 (516) T protein:vir:10 139 DTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYREI-------------VTSDIGGTTIVKGYREFFIYTTGN 205 (516) T ss_pred hHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEeee-------------cccccccchhhhhhhheeeeccCc Confidence 999999999999999988885 5567889999998876331 111111111111 01222111000 Q ss_pred -eEEEEEEEEecCCccccCccccccccccccCCCcceee--cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 197 -SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI--SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 197 -~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~--~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) .|.+.-+.|.. +++|. +|. ..+++ +|+ +.. | ...=+|-+.+|.--... T Consensus 206 ~~~~~~g~~~~~------~~~ik---I~~-----dAI~y~hSGL-------~d~---~-----~~~i~syLhkAiKp~NQ 256 (516) T protein:vir:10 206 EGYSYNGRIFEP------NTRIK---IPR-----SAVVYASSGL-------MDC---S-----DRGIIGYLHNAVKPANQ 256 (516) T ss_pred cccccccceeCC------Cccee---ech-----hheeeecccc-------eeC---C-----CCceeeeehhhhHhHHh Confidence 11111111111 11110 110 01111 111 000 0 00113444444433333 Q ss_pred HHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CCC Q lcl|Aclame:pro 274 INDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDD 323 (508) Q Consensus 274 lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~ 323 (508) |=-.-+.+ .+--|.-..|||- .- .+++ +|..++.. .+++.+..+. -++ T Consensus 257 Lkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev--~ddrk~msMlEDyWLpRReG 334 (516) T protein:vir:10 257 LKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV--KNQKRNLSMTEDYWLMRRDG 334 (516) T ss_pred hHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee--ccchhhhhhHhhhcccccCC Confidence 32222222 2223455556663 11 1110 23433332 1222222221 122 Q ss_pred CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc-c--chHHHHHHHHHHHHhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG-V--KTATEVVSNNSMTYQTRSSYLTMVEKAIDE 400 (508) Q Consensus 324 ~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~~~~~~l~~~~~~~~~~~~~al~~ 400 (508) +.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..+++. . .-++||.-..-....-+..++..|..-|.+ T Consensus 335 grgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~ 413 (516) T protein:vir:10 335 KSVTEVSSLPGAQTM-GDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLD 413 (516) T ss_pred CCccceeeccccCCc-ChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 233346665543222 234667777888889888888877665442 2 346677666555556666677777777777 Q ss_pred HHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-----HHH--hCCCCCHHHHHHhcC Q lcl|Aclame:pro 401 LCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-----KVL--AIGALSKQTFLQRNY 471 (508) Q Consensus 401 li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-----~~~--~~Gi~s~et~l~~~~ 471 (508) +++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ ++. -+..+|.+++.++.. T Consensus 414 ~L~~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~IL 484 (516) T protein:vir:10 414 PLKTNLIYKR---IIT----EDEWDEQIN--NIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNIL 484 (516) T ss_pred HHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHh Confidence 7665443311 111 111111112 3445554 333333333332211 111 235789999999999 Q ss_pred CCCHHHHHHHHHHHHHhccCCCCCC-cccccC Q lcl|Aclame:pro 472 GMTDEQAAEELAKIQSEAPTDTFEG-GRSAIL 502 (508) Q Consensus 472 ~~~deea~~e~~ri~~E~~~~~~~~-~~~~~~ 502 (508) ..||+|.++|-++|++|....-... +...-+ T Consensus 485 r~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 485 QMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred cCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 9999999999999999976542221 111222 No 217 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=93.07 E-value=0.0089 Score=31.83 Aligned_cols=426 Identities=13% Similarity=0.123 Sum_probs=191.9 Q ss_pred CChHHHHHHHHHHHHHhhh--hhhhhHHhhc-c-cc----ccC-----------------CH---HHHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATG--VTGSLSKITD-D-PR----ISI-----------------DP---DEYVRIQTDLDYYSD 52 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~--~~~~~~~~~~-~-~~----i~~-----------------~~---~~~~~i~~~~~~Y~g 52 (508) |+|.+-.+-|.+.--...- ......++.- + .+ |.. ++ ...+-|++++.++ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma-- 78 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLI-- 78 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHh-- Confidence 8887766655542221100 0001111110 0 00 000 00 0111222222221 Q ss_pred CCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 53 KLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDNDFKNKF 120 (508) Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~f~~~~ 120 (508) ..+-....++..++=+. .+|+++.+++-+ ...+..+.++.--+|.++. T Consensus 79 --------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~ 138 (516) T protein:vir:10 79 --------------------NNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKL 138 (516) T ss_pred --------------------hccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhh Confidence 11222223333332221 235566654322 1234456666666899999 Q ss_pred HHHHHHHhhcCCEEEEEEEeC---CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE-EEEEEEEeCCc Q lcl|Aclame:pro 121 EEALEKGVALGGFAMRPYIDG---NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT-LLEFHQWQDNG 196 (508) Q Consensus 121 ~~~~~~a~~~G~~~~~~~~d~---~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt-~lE~h~~~~~g 196 (508) .+.+.....-|..+||-..|+ |-..+..++|.++-++..- ...+.++...+. ..|++.+..+. T Consensus 139 ~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i-------------~~~~~~~~~v~~~~~e~~~Y~~~~ 205 (516) T protein:vir:10 139 DTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYREI-------------VTSDIGGTTIVKGYREFFIYTTGN 205 (516) T ss_pred hHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEeee-------------cccccccchhhhhhhheeeeccCc Confidence 999999999999999988885 5567889999998876331 111111111111 01222111000 Q ss_pred -eEEEEEEEEecCCccccCccccccccccccCCCcceee--cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHH Q lcl|Aclame:pro 197 -SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI--SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) Q Consensus 197 -~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~--~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~ 273 (508) .|.+.-+.|.. +++|. +|. ..+++ +|+ +.. | ...=+|-+.+|.--... T Consensus 206 ~~~~~~g~~~~~------~~~ik---I~~-----dAI~y~hSGL-------~d~---~-----~~~i~syLhkAiKp~NQ 256 (516) T protein:vir:10 206 EGYSYNGRIFEP------NTRIK---IPR-----SAVVYASSGL-------MDC---S-----DRGIIGYLHNAVKPANQ 256 (516) T ss_pred cccccccceeCC------Cccee---ech-----hheeeecccc-------eeC---C-----CCceeeeehhhhHhHHh Confidence 11111111111 11110 110 01111 111 000 0 00113444444433333 Q ss_pred HHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CCC Q lcl|Aclame:pro 274 INDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDD 323 (508) Q Consensus 274 lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~ 323 (508) |=-.-+.+ .+--|.-..|||- .- .+++ +|..++.. .+++.+..+. -++ T Consensus 257 Lkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev--~ddrk~msMlEDyWLpRReG 334 (516) T protein:vir:10 257 LKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV--KNQKRNLSMTEDYWLMRRDG 334 (516) T ss_pred hHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee--ccchhhhhhHhhhcccccCC Confidence 32222222 2223455556663 11 1110 23433332 1222222221 122 Q ss_pred CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc-c--chHHHHHHHHHHHHhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG-V--KTATEVVSNNSMTYQTRSSYLTMVEKAIDE 400 (508) Q Consensus 324 ~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~~~~~~l~~~~~~~~~~~~~al~~ 400 (508) +.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..+++. . .-++||.-..-....-+..++..|..-|.+ T Consensus 335 grgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~ 413 (516) T protein:vir:10 335 KSVTEVSSLPGAQTM-GDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLD 413 (516) T ss_pred CCccceeeccccCCc-ChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 233346665543222 234667777888889888888877665442 2 346677666555556666677777777777 Q ss_pred HHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-----HHH--hCCCCCHHHHHHhcC Q lcl|Aclame:pro 401 LCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-----KVL--AIGALSKQTFLQRNY 471 (508) Q Consensus 401 li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-----~~~--~~Gi~s~et~l~~~~ 471 (508) +++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ ++. -+..+|.+++.++.. T Consensus 414 ~L~~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~IL 484 (516) T protein:vir:10 414 PLKTNLIYKR---IIT----EDEWDEQIN--NIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNIL 484 (516) T ss_pred HHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHh Confidence 7665443311 111 111111112 3445554 333333333332211 111 235789999999999 Q ss_pred CCCHHHHHHHHHHHHHhccCCCCCC-cccccC Q lcl|Aclame:pro 472 GMTDEQAAEELAKIQSEAPTDTFEG-GRSAIL 502 (508) Q Consensus 472 ~~~deea~~e~~ri~~E~~~~~~~~-~~~~~~ 502 (508) ..||+|.++|-++|++|....-... +...-+ T Consensus 485 r~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 485 QMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred cCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 9999999999999999976542221 111222 No 218 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=92.49 E-value=0.011 Score=31.28 Aligned_cols=384 Identities=15% Similarity=0.125 Sum_probs=161.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) |+-.+ +...+..+. .....+|.-..+.+.....|.... .|...- +... ....-+... T Consensus 15 ~~~~~--~~~~~~ia~-------~~~~~~~~~~~~~~~~~~~iLr~~---~~~~~~--y~~m--------~~D~~i~s~- 71 (491) T protein:vir:10 15 FGEPD--KSLSSQIAT-------RARSIDFFALGMYLPNPDPVLKAL---GKDIRV--YREL--------RADAHVGGC- 71 (491) T ss_pred cccCC--hHHHHHHHh-------hhcccccccccCCccchHHHHHhc---CCCHHH--HHHH--------hhChHHHHH- Confidence 11100 000000000 000111111112222222221100 000000 0000 000112222 Q ss_pred HHHHHHhhhcCcceEeeC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CCee---EEEEEcCCeE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVK-DNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID--GNHI---KIAWVRADQF 154 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~-~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~~~---~i~~v~a~~~ 154 (508) .++-..-|++.+..|... +++...+++.++++.-.|...+..++ .|..+|-+++-..|. +|.+ ++.++++..| T Consensus 72 l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f 150 (491) T protein:vir:10 72 VRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWF 150 (491) T ss_pred HHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccce Confidence 333344556667777653 34445678999998878888888776 688899888877775 3332 3444555443 Q ss_pred EEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceee Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI 234 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~ 234 (508) .+ ...+++ .| ...+...-|.++ |.+ T Consensus 151 ~~--d~~~~l------------------~~---------------------~~~~~~~~g~~l-----~~~--------- 175 (491) T protein:vir:10 151 VY--DPENQL------------------RF---------------------RSKDHWMQGEEL-----PAR--------- 175 (491) T ss_pred ee--ccCCce------------------EE---------------------ecCCCCCCccee-----cCC--------- Confidence 32 001111 00 000000001111 110 Q ss_pred cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCC-C---CccC Q lcl|Aclame:pro 235 SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDE-H---KPTF 309 (508) Q Consensus 235 ~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~-~---~~~~ 309 (508) -|..++ .+...++|+|.|.+..|....---+..+..|+.-+ +.|.|.+++ +++.. . +..+ T Consensus 176 ------k~i~~~----~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig-----ky~~~a~~~ek~~l 240 (491) T protein:vir:10 176 ------KFLVPR----QEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG-----KHPRSASDGEKNLL 240 (491) T ss_pred ------CEEEEE----ecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-----ecCCCCCHHHHHHH Confidence 022221 22334678999999988765555555555555444 467776665 22211 1 1100 Q ss_pred Ccc-----cceEeeecCCCCCCCcceEeeccC---CHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHH Q lcl|Aclame:pro 310 DTE-----QNVYVGVLSDDNNGLGVKDMTTPI---RTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNS 381 (508) Q Consensus 310 ~~~-----~~~~~~~~~~~~~~~~i~~~~~di---r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~ 381 (508) -.. .+-...+. .+..|+.++... ..+.|.+.++.+=++|+..+ ++ ++++-+.+|...+.++-..- T Consensus 241 ~~al~~~~~~a~~viP----~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i-LG-qtlTt~~~gs~a~~~vh~~v- 313 (491) T protein:vir:10 241 LDCLEDMVQDAVAVVP----DDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL-LG-QNQTTEATSTRASAQAGLEV- 313 (491) T ss_pred HHHHHHHhcCcEEEec----CCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH-hh-hhcccCcccchhHHHHHHHH- Confidence 000 00011111 122366665432 22346555655555554333 33 23332222222122222211 Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 382 MTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGAL 461 (508) Q Consensus 382 ~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~ 461 (508) ....++.-.+.+...|.+||+-++.+. .+ . . + .+.+.|... ..+.++.++.+.+++..|+- T Consensus 314 -~~di~~~D~~~i~~tln~li~~l~~~N-------~~------~--~-~-~p~f~~~~~-~e~~~~~a~~~~~L~~~G~~ 374 (491) T protein:vir:10 314 -TDDIRDGDKAVVSEAMNMLIRWICDLN-------FD------G--A-D-RPVFDMWEQ-EQVDEIQAGRDQKLTQAGAR 374 (491) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC------C--C-C-cceEEecCc-CchhHHHHHHHHHHHhCCCc Confidence 223333445667778888888766542 01 0 0 1 234667653 33335567778889999986 Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 462 SKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 462 s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) -.+.++.+.+|+++.+-.+.... .+.....+..........+. T Consensus 375 i~~~~i~e~~Gip~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 417 (491) T protein:vir:10 375 FTPAYFKRAYNLQDGDLDERPLP----VSAVDTVGAASFAEFEAPDQ 417 (491) T ss_pred CCHHHHHHHhCCCCCCcCccccc----cCCCCCcccccccccCCCCC Confidence 67788888889866432222111 11111111111111111111 No 219 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=92.39 E-value=0.012 Score=31.20 Aligned_cols=429 Identities=11% Similarity=0.137 Sum_probs=189.3 Q ss_pred CCh--HHHHHHHHHHHHHhhh--hhhhhHHhh-cc-----ccc--cCCH-------------------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MGL--IQRIKDLFWKGAAATG--VTGSLSKIT-DD-----PRI--SIDP-------------------DEYVRIQTDLDY 49 (508) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~--~~~~~~~~~-~~-----~~i--~~~~-------------------~~~~~i~~~~~~ 49 (508) |.+ .+-++-|.+.--.... ......++. .| .-| .++. ...+-|++++.+ T Consensus 1 m~~~~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~m 80 (521) T protein:vir:10 1 MNPIFLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSL 80 (521) T ss_pred CCcchhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHH Confidence 443 1212222221111100 000000110 00 000 0000 011112222222 Q ss_pred hcCCCccccCccCCCccccccccccchHHHHHHHHHHhh-----hcCcceEeeCCc---HH----HHHHHHHHHHhhhHH Q lcl|Aclame:pro 50 YSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVV-----FNEKAEIHVKDN---NE----ADKFLNDVLEDNDFK 117 (508) Q Consensus 50 Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll-----~~e~~~i~~~~~---~~----~~~~l~~~l~~n~f~ 117 (508) + ..+-....++..++=+ ..+|+.+.+++- +. ..+..+.++.--+|. T Consensus 81 a----------------------~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~ 138 (521) T protein:vir:10 81 S----------------------KYHEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFE 138 (521) T ss_pred h----------------------hccchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccc Confidence 1 1122233333333322 123566665431 22 234456666666899 Q ss_pred HHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE-EEEEEE Q lcl|Aclame:pro 118 NKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT-LLEFHQ 191 (508) Q Consensus 118 ~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt-~lE~h~ 191 (508) ++..+.+.....-|..+||..+|. |-..+..++|.++-++.-.... +..+...++ ..|++. T Consensus 139 ~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~-------------~~~~~~v~~~~~e~f~ 205 (521) T protein:vir:10 139 REGKRHFRRWYVDSRIYFHKMIDPARPKDGIKELRLLDPRNVEYYRVNLKS-------------NENGNDVYKGVKEFFT 205 (521) T ss_pred hhhhHHHhhheeeeeEEEEEEeeCCCccccceeeeeeCCcceeeeeeecCC-------------CCCcchhhccceeeee Confidence 999999999999999999999984 4456888888887555221111 111100110 012222 Q ss_pred EeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHH Q lcl|Aclame:pro 192 WQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVL 271 (508) Q Consensus 192 ~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~li 271 (508) +...+. .-|...++..-|.++|-+ .+++... +. .+...+..+|-+.+|.--. T Consensus 206 Y~~~~~-----~~~~~~g~~~~~vkI~~d----------aI~y~hS-----GL--------~d~~~~~i~syLhkAiKp~ 257 (521) T protein:vir:10 206 YGATED-----NRYNISGNSNNLVQIPID----------AIVYSHS-----GK--------VDIDGKTIVGYLHNVIKPA 257 (521) T ss_pred eccCCC-----ceecCCCCCCcceeechh----------heeeecc-----cc--------eeCCCCceeccchhhhHhH Confidence 211110 011111111111111111 1111110 00 1222345567666666555 Q ss_pred HHHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------C Q lcl|Aclame:pro 272 DDINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------S 321 (508) Q Consensus 272 d~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~ 321 (508) ..|=-.-+.+ .+--|.-..|||- .- .+++ +|..++..- +++.+..+. - T Consensus 258 NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~--ddrk~msMlEDyWLpRR 335 (521) T protein:vir:10 258 NQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVK--NSSNNLAMTEDYWLMRR 335 (521) T ss_pred HhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceec--cchhhhhhHhhhccccc Confidence 5554333333 2223555666663 11 1111 344433221 122222221 1 Q ss_pred CCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc--cchHHHHHHHHHHHHhhHHHHHHHHHHHHH Q lcl|Aclame:pro 322 DDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG--VKTATEVVSNNSMTYQTRSSYLTMVEKAID 399 (508) Q Consensus 322 ~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~--~~TAtei~~~~~~l~~~~~~~~~~~~~al~ 399 (508) +++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+...++| ..-++||.-..-....-+..++..|..-|. T Consensus 336 eGgrgTEI~TLpggqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~~f~ 414 (521) T protein:vir:10 336 DGKATTEVSTLPGAQSM-GEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFTKYIRGLQQQFEPIFL 414 (521) T ss_pred CCCCccceeeccccCCc-ChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHHHHHHHHHHHHHHHHH Confidence 22233346665543222 234667777888888888888777665432 223456665555555566666666766666 Q ss_pred HHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-HHH--hCC------CCCHHHHHH Q lcl|Aclame:pro 400 ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-KVL--AIG------ALSKQTFLQ 468 (508) Q Consensus 400 ~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-~~~--~~G------i~s~et~l~ 468 (508) ++++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ .+. ..+ .+|.+++.+ T Consensus 415 ~~L~~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k 485 (521) T protein:vir:10 415 NPLRTNLMLKG---KMS----VSEWEEQAE--NIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMK 485 (521) T ss_pred HHHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccchHHHHH Confidence 66665443311 111 111111122 2444444 333333333332221 111 123 778888889 Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 469 RNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 469 ~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) +....||+|.+++-++|++|....-...+....++= T Consensus 486 ~ILr~tDeeik~~~k~I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 486 NILRMSDEDIKTEREKIDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred HHhcCCHhHHHHHHHHHHHhhhCCCCCCCcchhhcC Confidence 999999999999999999998654222221111111 No 220 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=92.05 E-value=0.013 Score=30.92 Aligned_cols=377 Identities=11% Similarity=0.069 Sum_probs=140.5 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhc--CCCccccCccCCCccccccccccchH--HHHHHHHHHhhhcCcc Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYS--DKLQYIHYQASDGIKKKRLKNTINMA--KTAARRIASVVFNEKA 93 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~--g~~~~~~~~~~~~~~~~~~~~~~n~~--~~iv~~~A~ll~~e~~ 93 (508) |.+...+.... +. .|...+. |-.+......+ .. ..+..+ -..++.+|+-+-.=|+ T Consensus 1 m~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~~g~~~-----~~--~Al~~~~V~~cv~~ia~~iA~lp~ 59 (417) T protein:vir:38 1 MKLFRGLATEV-------DP-------HWADHLLDSGVIPSFRGGYL-----GI--SALRNSDVLTAVSIVSGDVSRFPL 59 (417) T ss_pred CccccccccCC-------Cc-------cchhhhcccccccccCCcee-----ch--hhcccHHHHHHHHHHHHhhccCee Confidence 11111111111 10 0211111 11111111110 00 011221 1223444444433355 Q ss_pred eEeeCCcH-HH-HHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC--Cee-EEEEEcCCeEEEEEEcCCC Q lcl|Aclame:pro 94 EIHVKDNN-EA-DKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG--NHI-KIAWVRADQFYPLQSNTND 163 (508) Q Consensus 94 ~i~~~~~~-~~-~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~-~i~~v~a~~~~Pi~~d~~~ 163 (508) .+.-.+.+ .. +..+..+|.. | ....-....+..++-.|.+++.+..|. +.+ .+.+++|+.+.+...+.++ T Consensus 60 ~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~ 139 (417) T protein:vir:38 60 VITDSSTDEVIDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDN 139 (417) T ss_pred EEEEcCCcceeccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCe Confidence 54322111 00 1122333321 1 122233445666777898887777653 433 4667888887664333332 Q ss_pred eEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEE Q lcl|Aclame:pro 164 ISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFA 243 (508) Q Consensus 164 ~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~ 243 (508) + .|+. +..+++ .. ..|.. .+ .. T Consensus 140 ~------------------~y~~----~~~~~~-~~---~~~~~----------------------~d----------vi 161 (417) T protein:vir:38 140 I------------------IYRF----TPYNSS-MQ---KVCGF----------------------ED----------VI 161 (417) T ss_pred E------------------EEEE----EEcCCc-EE---EEecC----------------------cc----------eE Confidence 1 1110 000111 00 00000 00 12 Q ss_pred EecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeeech-HHhcCCCCCCccCCcc-cceEeeec Q lcl|Aclame:pro 244 YFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAVQP-GMLRFDDEHKPTFDTE-QNVYVGVL 320 (508) Q Consensus 244 ~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 320 (508) +++.+-. +...|+|.+.-+...|......-....+-|+.| .+..++.. ..+ +++....+... .+.|.+.+ T Consensus 162 H~r~~~~-----d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l--~~e~~~~~~~~~~~~~~g~n 234 (417) T protein:vir:38 162 HWKFFSY-----DTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRL--SAEARQKIREDFERAQAGAD 234 (417) T ss_pred EecCCCC-----CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCC--CHHHHHHHHHHHHHHhcccc Confidence 3332211 123588988877777765554444444455653 45444311 111 11111111000 01111111 Q ss_pred CCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 321 SDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 321 ~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) .+. +++..++.++......++++..+...+.|....|++|..++...+ ..++++.... .++. T Consensus 235 ~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~-~s~~e~~~~~-------------~~~~ 300 (417) T protein:vir:38 235 AGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSP-NQSVKQLADD-------------YIRN 300 (417) T ss_pred cCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCCc-chhHHHHHHH-------------HHHH Confidence 110 122234444433333355666666678899999999999974322 2223222211 1233 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHh--cCCCC Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR--NYGMT 474 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~--~~~~~ 474 (508) +|..++..|..-.+.. ++... ......|.|+..- .+ ...++...+++.+|+|+.-+++.. +|-++ T Consensus 301 tl~P~~~~ie~~l~~~-Ll~~~----------~~~~~~~~fd~~~-l~-~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~ 367 (417) T protein:vir:38 301 DLPFYFEPITSEFELK-LLDDA----------QRHQYCIGFDTKS-VN-GLPIADVNTAVNGGLWTGNEGRAELGKKPLK 367 (417) T ss_pred HHHHHHHHHHHHHHhh-hcChh----------hcccceEEechhh-hh-HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 3333333332111110 11100 0012345565332 12 223445667788999999998875 33333 Q ss_pred HHHHHHH--------HHHHHHhc---cCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 475 DEQAAEE--------LAKIQSEA---PTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 475 deea~~e--------~~ri~~E~---~~~~~~~~~~~~~~~~~g~ 508 (508) +.++.+- +....+++ ..+.. ++.....++..++ T Consensus 368 ~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~k-gg~~~~~~~~~~~ 411 (417) T protein:vir:38 368 DPNMDRIQSTLNTVFLDQKEAYQAEHAAELK-GGDTNAKGNQNGS 411 (417) T ss_pred CCCCCeeeecccccccccccccccccccccC-CCCCCCCCCCcCC Confidence 2221110 11111111 11111 1211222221222 No 221 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=91.85 E-value=0.014 Score=30.75 Aligned_cols=380 Identities=13% Similarity=0.116 Sum_probs=158.9 Q ss_pred CChHHHHH---H--HHHHHHHhhhhhhhhHHhh-ccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc Q lcl|Aclame:pro 1 MGLIQRIK---D--LFWKGAAATGVTGSLSKIT-DDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) Q Consensus 1 m~~~~~ik---~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~ 74 (508) |..+.-+| + ||++.-+.... .+..... -...+..+ ...|.....+. +.. .-... T Consensus 1 ~~~~~~~~~~~~m~~F~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------~~~---~~~~~ 60 (413) T protein:vir:96 1 MPGVSEIRKDKNLKFFNNKRSPTEE-SKAKDEIPKAPQVVMT------LPNFFKELISD----------GYT---KLSDS 60 (413) T ss_pred CCccchhhhhhcCCccccCCCcchh-hhhhcccccccccccc------chhhHhhhccc----------hhH---HHhhc Confidence 55554433 2 22211100000 0000000 00001111 11111111111 000 00112 Q ss_pred chHHHHHHHHHHhhhcCcceEeeCC---cHHHHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeC-C-ee Q lcl|Aclame:pro 75 NMAKTAARRIASVVFNEKAEIHVKD---NNEADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-N-HI 144 (508) Q Consensus 75 n~~~~iv~~~A~ll~~e~~~i~~~~---~~~~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~-~~ 144 (508) ......++.+|+-+-.=|+.+--.+ .......+..+|. -| ....-++.++...+..|.+++.+..+. | .+ T Consensus 61 ~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~ 140 (413) T protein:vir:96 61 PEVRMAVDCIADLVSNMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKI 140 (413) T ss_pred hHHHHHHHHHHHhhccCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCce Confidence 3334455666666555455542111 1111112233332 12 223445666778888899988887764 3 33 Q ss_pred -EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccc Q lcl|Aclame:pro 145 -KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLP 223 (508) Q Consensus 145 -~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~ 223 (508) .+..++|+.+-+. .+.+.+ .|.. +..++.|.. T Consensus 141 ~~L~~l~~~~v~~~-~~~~~~------------------~y~~------------~~~~~~~~~---------------- 173 (413) T protein:vir:96 141 IGLTPISPYKVTFN-VSDDDL------------------DYSI------------TFDNKEYDP---------------- 173 (413) T ss_pred EEEEEecCceeEEE-EcCCeE------------------EEEE------------eecCcEEch---------------- Confidence 5777888887653 222211 1100 000000100 Q ss_pred cccCCCcceeecCCCcceEEEecC-CccccccCCCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHH Q lcl|Aclame:pro 224 VYKELAPQVTISGLQRPLFAYFKT-PGANNINIESP-LGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGM 298 (508) Q Consensus 224 ~~~~l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~sp-lG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~ 298 (508) .+ ..++|. +.+ .++ .|.|.+.-+...|......-.....-|+.| .+.-++ +..+ T Consensus 174 ------~e----------vih~k~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l 232 (413) T protein:vir:96 174 ------ST----------LLHFVLNPSI-----ERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDS 232 (413) T ss_pred ------hh----------EEEEeccCCC-----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC Confidence 00 123331 111 122 488888877777766655544444455653 444333 2211 Q ss_pred hcCCCCCCccCCcc-cceEee-------ecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc Q lcl|Aclame:pro 299 LRFDDEHKPTFDTE-QNVYVG-------VLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG 369 (508) Q Consensus 299 ~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 369 (508) +++....+... ...|.+ +-.. .++..++.+.+ .....+.++..+...++|....|++|..+|.... T Consensus 233 ---~~e~~~~~~~~~~~~~~g~~n~g~~~vl~-~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~- 307 (413) T protein:vir:96 233 ---DELSDEEGRENFEEMYLKRKEAGKPWIIP-EGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGTY- 307 (413) T ss_pred ---CHHHHHHHHHHHHHHhcCccccCceeeec-CCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCcc- Confidence 11111000000 001111 0111 11112222221 2223455566667778999999999999864321 Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 370 VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 370 ~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) ++-. . ...++.+|..++..|....+.. ++. ....+.|++++-+..|.++.+ T Consensus 308 ----~~~~--~----------~~~~~~~l~P~~~~ie~~ln~~-ll~------------~~~~~~fd~~~ll~~d~~~~~ 358 (413) T protein:vir:96 308 ----NKDE--F----------NNFINTKIMSIAQVIQQTYNKL-IVE------------EDMYFSLNPRSLYNYSLTEMV 358 (413) T ss_pred ----hHHH--H----------HHHHHHHHHHHHHHHHHHHHHh-hCC------------CCcEEEEechhhhccCHHHHH Confidence 1111 1 1134444555544443332211 111 134577888887788999999 Q ss_pred HHHHHHHhCCCCCHHHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 450 EEDAKVLAIGALSKQTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 450 ~~~~~~~~~Gi~s~et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +...+++.+|+|+.-+++... |.++ +..++-+-. .-..+.+...+.-....|| T Consensus 359 ~~~~~~~~~G~~t~NE~R~~~-g~~p~~~gd~~~~~-----~n~~~~~~~~~~~~~~~~d 412 (413) T protein:vir:96 359 SAGAQMTQLNALRRNEFRNWV-GMPPDAEMDDLLVL-----ENYLQQKDLVNQKKLIQDE 412 (413) T ss_pred HHHHHHHhCCCcCHHHHHHHh-CCCCCCCcceeeec-----ccccchhhcccccCCCCCC Confidence 999999999999999988753 4433 112111100 0000111111222233444 No 222 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=91.47 E-value=0.016 Score=30.48 Aligned_cols=372 Identities=14% Similarity=0.132 Sum_probs=144.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhcccccc--CCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRIS--IDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~ 78 (508) |||++-++..+..+- ++ ...++......+.. .+.+.+ ..+-..| .=-. T Consensus 1 mg~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~t~~~~---~~~~~v~------------------------~cv~ 50 (403) T protein:vir:10 1 MGFKSWITEKLNPGQ-RI--IRDMEPVSHRTNRKPFTTGQAY---SKIEILN------------------------RTAN 50 (403) T ss_pred Ccchhhhhhccchhh-hh--hhcccccccccCCcccccHHHH---HHHHHHH------------------------HHHH Confidence 998875555432111 10 11111111111100 011000 0000000 0012 Q ss_pred HHHHHHHHhhhcCcceEee-----CCcH-HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHV-----KDNN-EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKIA 147 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~-----~~~~-~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~ 147 (508) .|++..|++ |..+.- .+.+ ....-+..+|.. | ....-.+.++..++-.|.+++. .+... +- T Consensus 51 ~Ia~~ia~~----p~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~--~~~~~--l~ 122 (403) T protein:vir:10 51 MVIDSAAEC----SYTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIY--WDGTS--LY 122 (403) T ss_pred HHHHHHhhC----ceeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEE--EeCce--eE Confidence 344444443 222210 0100 001112223321 1 1122233345566667877643 33322 33 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) .++++.+-+ ..+.+.. +|. ..+ .. .++ |.. . T Consensus 123 ~l~~~~~~v-~~~~~~~------------------~~~-~~~---~~----~~~---~~~------------~------- 153 (403) T protein:vir:10 123 HVPAALMQV-EADANKF------------------IKK-FIF---NN----QIN---YRV------------D------- 153 (403) T ss_pred eecCcceEE-EEcCCce------------------EEE-EEe---cC----cee---ecc------------c------- Confidence 455555332 2222211 110 000 00 000 000 0 Q ss_pred CCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhcc-ceeee--chHHhcCCCC Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQ-KHIAV--QPGMLRFDDE 304 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~v--~~~~~~~~~~ 304 (508) + ..+++.........+...|+|.+.-+...++..........+-|+.|. +..++ |..+ +++ T Consensus 154 ---e----------iih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l---~~e 217 (403) T protein:vir:10 154 ---E----------IIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEIL---NKK 217 (403) T ss_pred ---c----------eEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC---CHH Confidence 0 011121110001112346889888887777766555444455566653 33222 1111 111 Q ss_pred CCccCCcc-cceEee-------ecCCCCCCCcceEeecc--CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHH Q lcl|Aclame:pro 305 HKPTFDTE-QNVYVG-------VLSDDNNGLGVKDMTTP--IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTAT 374 (508) Q Consensus 305 ~~~~~~~~-~~~~~~-------~~~~~~~~~~i~~~~~d--ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 374 (508) ....+... ...|.+ +-.+ ++-.++.++.. ....+..+..+...+.|....|++|..++.... .+.+ T Consensus 218 ~~~~~~~~~~~~~~g~~n~g~~~vl~--~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--sn~e 293 (403) T protein:vir:10 218 LRERKQEELQLDYNPSTGQSSVLILD--GGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGNN--ANIR 293 (403) T ss_pred HHHHHHHHHHHHhCCcccCcceeecC--CCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC--cCHH Confidence 10000000 001111 1111 12224444422 223356677777788999999999999864322 2222 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCC--ccCCHHHHHHHH Q lcl|Aclame:pro 375 EVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDG--VFVNKDKQLEED 452 (508) Q Consensus 375 ei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~--i~~d~~~e~~~~ 452 (508) +.. .+....++.-....++..|...+ ...+.++++.- +..|.++.++.+ T Consensus 294 ~~~--~~f~~~tl~P~~~~ie~~l~~~L---------------------------~~~~~~d~~~~~~l~~D~~~~~~~~ 344 (403) T protein:vir:10 294 PNI--ELFYYMTIIPMLNKLTSSLTFFF---------------------------GYKITPNTKEVAALTPDKEAEAKHL 344 (403) T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhc---------------------------CceeeeccchhhhcccCHHHHHHHH Confidence 211 11111222223333333332211 02344555532 456888888888 Q ss_pred HHHHhCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHhcc-CCCCCCcccccCCCCCCC Q lcl|Aclame:pro 453 AKVLAIGALSKQTFLQR--NYGMTDEQAAEELAKIQSEAP-TDTFEGGRSAILNGGDGE 508 (508) Q Consensus 453 ~~~~~~Gi~s~et~l~~--~~~~~deea~~e~~ri~~E~~-~~~~~~~~~~~~~~~~g~ 508 (508) .+++..|+|+.-+++.. .+-++++.+.+-+--..-... ....+++..+..++..|| T Consensus 345 ~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~~~~~~~~~e~~~~~~~~~g~ 403 (403) T protein:vir:10 345 TSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVAGSATGVSGQEGGRPKGSTEGD 403 (403) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCcccccccccccccccccccCCCCcCCCCCCCcCCC Confidence 88999999999998876 444544454443321111111 112222222334445555 No 223 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=91.46 E-value=0.016 Score=30.47 Aligned_cols=375 Identities=13% Similarity=0.120 Sum_probs=161.3 Q ss_pred hHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCcc-------CCCcccc-cc-ccccchHHHHHHHHHHhhhcCcce Q lcl|Aclame:pro 24 LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA-------SDGIKKK-RL-KNTINMAKTAARRIASVVFNEKAE 94 (508) Q Consensus 24 ~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-------~~~~~~~-~~-~~~~n~~~~iv~~~A~ll~~e~~~ 94 (508) ++ ++ +++. ....+..+..++.+.+..+.... ..|.-.. .. ..-.-+.. ..++-..-|++-+.. T Consensus 1 v~----~~--~l~~-e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~~D~~i~s-~l~~rk~av~~~~w~ 72 (488) T protein:vir:99 1 ME----KP--ALGR-EIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEILSDAQVKT-VWGQRQLAVVSREWK 72 (488) T ss_pred CC----cc--chhH-HHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHhhChHHHH-HHHHHHHHHhcCCce Confidence 00 00 1111 11223333444433222111000 0000000 00 00001222 234444556666777 Q ss_pred EeeCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEe--CCee---EEEEEcCCeEEEEEEcCCCeE Q lcl|Aclame:pro 95 IHVKDNN----EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYID--GNHI---KIAWVRADQFYPLQSNTNDIS 165 (508) Q Consensus 95 i~~~~~~----~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d--~~~~---~i~~v~a~~~~Pi~~d~~~~~ 165 (508) |...+++ ..-+++.++|++-+|...+..++ .|..+|-+++-..|. +|.+ ++.++++..|.+ ...+++ T Consensus 73 i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~--d~~~~l- 148 (488) T protein:vir:99 73 VEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRY--DQDGGL- 148 (488) T ss_pred EEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccceee--cCCCce- Confidence 7643322 22367888998878888887776 578899888877774 3432 344444443321 011110 Q ss_pred EEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcce-EEE Q lcl|Aclame:pro 166 EAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPL-FAY 244 (508) Q Consensus 166 ~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~-f~~ 244 (508) ++. ..+...-|.++| .|. |.+ T Consensus 149 ---------------------------------~~~-----~~~~~~~g~~lp--------------------~~~~~i~ 170 (488) T protein:vir:99 149 ---------------------------------RLL-----TPNNMFEGEPCP--------------------APYFWHF 170 (488) T ss_pred ---------------------------------EEe-----ccCCCCCccccc--------------------cCceEEE Confidence 000 000000011111 111 111 Q ss_pred ecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCCC-----CccCCcc-----c Q lcl|Aclame:pro 245 FKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDEH-----KPTFDTE-----Q 313 (508) Q Consensus 245 ~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~~-----~~~~~~~-----~ 313 (508) . ..+...++|+|.|.+..|....--=+..+..|+.=+ +.|.|..++ ++++.+ +..+... . T Consensus 171 ~----~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig-----ky~~~~a~~~ek~~l~~av~~~~~ 241 (488) T protein:vir:99 171 S----TGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVG-----RYDDKTATPEDKAKLLAALHAIQT 241 (488) T ss_pred E----eecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeee-----ecCCCCCCHHHHHHHHHHHHHHhc Confidence 1 112234688999999988764333233333343333 357775544 233211 1100000 0 Q ss_pred ceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 314 NVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) Q Consensus 314 ~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~ 392 (508) .-...++. +..|+.++.. -..+.|.+.++.+=++|+..+ ++...-+++++|...+-++. ..-....+..-.+ T Consensus 242 ~~~~viP~----~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~i-LGqtlts~~~~Gs~a~~~vh--~~v~~d~~~aDa~ 314 (488) T protein:vir:99 242 DSAIIMPA----GMQAELLEAGRSGTADYKTLHDTMDATIAKVG-LGQVASTQGTPGRLGNDDLQ--ADVRLDLVKADAD 314 (488) T ss_pred CcEEEecC----CceeEEeecCCCChHHHHHHHHHHHHHHHHHH-hhhhhcccccccchhhHHHH--HHHHHHHHHHHHH Confidence 01111111 1235555432 233446666666666664443 33322233333221111121 1222344445566 Q ss_pred HHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhC-CCCCHHHHHHhc Q lcl|Aclame:pro 393 MVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAI-GALSKQTFLQRN 470 (508) Q Consensus 393 ~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~-Gi~s~et~l~~~ 470 (508) .+...|. +|++.++.+. ++. .....+.|+..-+.|.++.++.+.+++.. |+--.+.++.+. T Consensus 315 ~i~~tln~~li~~l~~~N-----~~~------------~~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~ 377 (488) T protein:vir:99 315 LICESFNLGPARWLTEWN-----FPG------------AQPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQET 377 (488) T ss_pred HHHHHHHHHHHHHHHHhC-----cCC------------cCCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHH Confidence 6777774 5887766551 110 01134567766778888888888898875 876677888888 Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCC-C Q lcl|Aclame:pro 471 YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDG-E 508 (508) Q Consensus 471 ~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g-~ 508 (508) +|++.++-.+.+ ....+...........+. + T Consensus 378 ~Gip~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 409 (488) T protein:vir:99 378 YGVEVESTQAEA-------TAPTPSTEFAEGDQPSDPAA 409 (488) T ss_pred cCCCCccccccc-------ccCCCcccCCCCCCCCCchH Confidence 898764322211 111111111111111111 1 No 224 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=90.93 E-value=0.018 Score=30.10 Aligned_cols=378 Identities=10% Similarity=0.010 Sum_probs=157.3 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH------HHHHHHHHHhhhcC Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA------KTAARRIASVVFNE 91 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~------~~iv~~~A~ll~~e 91 (508) |+...-+++ .. . .+...|..+..+-.. .....|... .....+..+ ..|++..|++ T Consensus 1 m~~~~~~~~----~~-~------~~~~~~~~~~~~~~~---~~~~~g~~v-~~~~al~~~~v~~~i~~ia~~ia~l---- 61 (419) T protein:vir:57 1 MFIPQFWKG----RP-S------ENRVNWQVVPGGMRS---SSSQAGVII-TPETALALSAVRACVTLLAESVAQL---- 61 (419) T ss_pred Ccchhhhcc----CC-c------ccccccccccccccc---ccccCCcee-chHHhhccHHHHHHHHHHHHhhccC---- Confidence 332222211 10 0 001112111111100 000111110 000011112 3445555543 Q ss_pred cceEe-e--CCc-HH-HHHHHHHHHH-----hhhHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEEE Q lcl|Aclame:pro 92 KAEIH-V--KDN-NE-ADKFLNDVLE-----DNDFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQFYPLQS 159 (508) Q Consensus 92 ~~~i~-~--~~~-~~-~~~~l~~~l~-----~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~~~Pi~~ 159 (508) |+.+- . ++. .. .+-.|..+|. ......-.+..+...+..|.+++.+..+. |+ +.+..++|..+-+... T Consensus 62 p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~ 141 (419) T protein:vir:57 62 PCVLYRRTENGGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKG 141 (419) T ss_pred ceEEEEEcCCCceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEEC Confidence 44431 1 111 00 1112333342 11233344556677788898888777764 54 3667778877765422 Q ss_pred cCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCc Q lcl|Aclame:pro 160 NTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQR 239 (508) Q Consensus 160 d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~ 239 (508) .++ ..|. ...+.| ..+|..+ T Consensus 142 ~~g-------------------~~~y-----~~~~~~------------------~~~~~~~------------------ 161 (419) T protein:vir:57 142 PDG-------------------MPYY-----DIPSIG------------------EILPMRM------------------ 161 (419) T ss_pred CCc-------------------eEEE-----EEcCCc------------------eEEchhh------------------ Confidence 111 1110 001111 1111000 Q ss_pred ceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcC-CCCCCc----cCC- Q lcl|Aclame:pro 240 PLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRF-DDEHKP----TFD- 310 (508) Q Consensus 240 ~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~-~~~~~~----~~~- 310 (508) ..+++.+- . +...|.|.+.-+...|+.....-....+-|+. +++.-++ |..+-.. +++... .|. T Consensus 162 --vih~r~~~---~--d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~ 234 (419) T protein:vir:57 162 --VHHIKSFS---L--DGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTE 234 (419) T ss_pred --EEEecCcC---C--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHH Confidence 12333221 1 23569999888888777655444333444554 5555444 1100000 000000 000 Q ss_pred ---cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhh Q lcl|Aclame:pro 311 ---TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQT 386 (508) Q Consensus 311 ---~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~ 386 (508) ...+....+-. +++..++.++......++.+..+...++|....|++|..++....+. .++++.. T Consensus 235 ~~~g~~nag~~~vl--~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~--------- 303 (419) T protein:vir:57 235 RYGGVRNAFSVGML--QEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQG--------- 303 (419) T ss_pred Hhccccccccceec--CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHH--------- Confidence 00011111111 12234555665555566777777888899999999999998765433 2222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 387 RSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTF 466 (508) Q Consensus 387 ~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~ 466 (508) ...++..|..++..+....+..-+.... ...+.|.|++++-+..|.++.++....++..|+|+.-++ T Consensus 304 ----~~f~~~~l~P~~~~ie~~l~~~ll~~~~---------~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~ 370 (419) T protein:vir:57 304 ----LQYVIYTMLAILKRHESAMMRDLLLPSE---------RRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDI 370 (419) T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhccCccc---------cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 1123333444443332221111011000 113457777777777899999998889999999999998 Q ss_pred HHhcCCCCH-HHHHHHHHHHHHhccCC--CCCCcccccCCCCCCC Q lcl|Aclame:pro 467 LQRNYGMTD-EQAAEELAKIQSEAPTD--TFEGGRSAILNGGDGE 508 (508) Q Consensus 467 l~~~~~~~d-eea~~e~~ri~~E~~~~--~~~~~~~~~~~~~~g~ 508 (508) +... |+.+ +..++-+-- ....+. ....+...+..-.|.+ T Consensus 371 R~~~-gl~p~~ggD~~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ 412 (419) T protein:vir:57 371 RRME-NLTPIPGGDKYLTP--LNMVDSKALTGIGKATPQQLKDIE 412 (419) T ss_pred HHHh-CCCCCCCcCeeeec--cccccccccccccCCCcccCcchh Confidence 8753 4432 111111100 000000 0000001111112222 No 225 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=90.81 E-value=0.019 Score=30.03 Aligned_cols=408 Identities=13% Similarity=0.080 Sum_probs=161.2 Q ss_pred CChH-HHHHHHHHHHHHhhhh---hhhh-HHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccc Q lcl|Aclame:pro 1 MGLI-QRIKDLFWKGAAATGV---TGSL-SKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTIN 75 (508) Q Consensus 1 m~~~-~~ik~~~~~~~~~~~~---~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n 75 (508) |+-| +.-.+-+++...+--. ...+ ....+|+--.+++.++.+|.+-. -.|+......- .... ..+ -.- T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a--~~gd~~~~~~L-~~~m--~e~--D~~ 73 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEA--EQGHLQAQAEL-FMDM--EER--DAH 73 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhh--hCCCHHHHHHH-HHHH--Hhh--ChH Confidence 2211 1000011100000000 0000 00111222233444443333321 11111100000 0000 000 001 Q ss_pred hHHHHHHHHHHhhhcCcceEeeCCcH-----HHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCCEEEEEEEeC--Cee--- Q lcl|Aclame:pro 76 MAKTAARRIASVVFNEKAEIHVKDNN-----EADKFLNDVLEDN-DFKNKFEEALEKGVALGGFAMRPYIDG--NHI--- 144 (508) Q Consensus 76 ~~~~iv~~~A~ll~~e~~~i~~~~~~-----~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~--- 144 (508) +... .++-..-|++-+..|...+++ ..-+++++.+.+- .|...+. .+..|..+|-+++-..|.. |.. T Consensus 74 i~s~-l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~-~~lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (528) T protein:vir:10 74 LFAE-MSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLML-DCMDGVGHGYSAIELDWSLQGREWLPQ 151 (528) T ss_pred HHHH-HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHH-HHHhhhhhcceeEEEEEeecCCceeEE Confidence 2222 233334455556667642211 2234677778653 3665554 4445888898888777642 322 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~ 224 (508) ++.++++..|.. + ..++ + .+++ + +...-|.++ T Consensus 152 ~~~~r~~~~f~~---~-----------------~~~~-----~---------~l~~-----~--~~~~~g~~l------- 183 (528) T protein:vir:10 152 AFDHRPQSWFQL---N-----------------PDDQ-----D---------ELRL-----R--DNSIAGEVL------- 183 (528) T ss_pred Eeeeecccceee---c-----------------cCCC-----c---------EEec-----c--CCCCCceee------- Confidence 233333322110 0 0000 0 0000 0 000001111 Q ss_pred ccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCC Q lcl|Aclame:pro 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDD 303 (508) Q Consensus 225 ~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~ 303 (508) |++.|+-. ..+...++|.|.+.+..|.-..--=...+..|+.=+ +.|.|.+++ +++. T Consensus 184 ---------------~~~k~iv~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig-----ky~~ 241 (528) T protein:vir:10 184 ---------------QPFGWIMH--KPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIRLG-----KYPP 241 (528) T ss_pred ---------------cCCCeEEE--eecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEE-----ecCC Confidence 11111110 123334678899998887654443333444444433 357776555 2221 Q ss_pred C-C---CccCCcc-----cceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhc-ccccc---c Q lcl|Aclame:pro 304 E-H---KPTFDTE-----QNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTF-SYSND---G 369 (508) Q Consensus 304 ~-~---~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~---~ 369 (508) . . +..+... ..-...+..+ .-|+.++.. -..+.|.+.++.+=++|+..+ ++ +++ ++.++ | T Consensus 242 ~a~~~ek~~L~~al~~i~~~~~~iiP~~----~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LG-qtlTs~~~~g~~g 315 (528) T protein:vir:10 242 GTPDEEKVTLLRAVTGLGHAAAGIIPES----MSIDFQEASKGSAEPFMAMMRWCDDSMSKAI-LG-GTLTSQTSESGGG 315 (528) T ss_pred CCCHHHHHHHHHHHHHHhhCcEEEecCC----ceeEEeecCCCChhHHHHHHHHHHHHHHHHH-hh-hhhhccccccccc Confidence 1 1 1111000 0011111211 235555432 334556666666666665544 44 333 22221 1 Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHH Q lcl|Aclame:pro 370 VKTATEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQ 448 (508) Q Consensus 370 ~~TAtei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e 448 (508) ...+-++- +.-....+..-.+.+...|. +|++.++.+.- + + ......-+.+.|+..-+.|..+. T Consensus 316 S~Alg~vh--~~v~~di~~aDa~~i~~tln~~li~~l~~~N~-------~-----~-~~~~~~~p~~~~~~~e~eDl~~~ 380 (528) T protein:vir:10 316 AYALGQVH--NEVRHDLLAADARQLAATLSRDLLWPLLVLNR-------S-----G-NLDARRAPRLVFDLKDRADLAAM 380 (528) T ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----C-CCCccccceEEecCCCcccHHHH Confidence 11111111 22223344455566777785 58887776521 0 0 00112235678888888888888 Q ss_pred HHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC---CCCcccccCCCCCC------C Q lcl|Aclame:pro 449 LEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDT---FEGGRSAILNGGDG------E 508 (508) Q Consensus 449 ~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~---~~~~~~~~~~~~~g------~ 508 (508) ++.+.+++..|+--.+.++.+.+|++..+-.+++..-+...+... ..+..........+ + T Consensus 381 a~~~~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (528) T protein:vir:10 381 ATSLPPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQE 449 (528) T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccc Confidence 899999999998555678888888865322222211111111111 01111111111111 1 No 226 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=90.41 E-value=0.021 Score=29.78 Aligned_cols=374 Identities=12% Similarity=0.092 Sum_probs=117.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|++++.||.+....... ....+ |..+.. . .....-+.-..-.--..| T Consensus 1 Mg~~~~~~~~~~~~~~~~~~----~~~~~-------------------~~~~~~-----~--~~~~~l~~~~v~~~v~~I 50 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNL----TDTVW-------------------CSIPSE-----K--LKELSIKKWAIDSCANKI 50 (395) T ss_pred CchHHHHHhhhccccccccc----ccchh-------------------hccccc-----c--chhhhhhhHHHHHHHHHH Confidence 99999999998643222110 00000 000000 0 000000000000112333 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--hh---HHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--ND---FKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFY 155 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n~---f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~ 155 (508) ++..|++ |+.+.-++ +....-+..+|.. |. ...-.+..+...+-.|.+++.+..+ +. ++ +..+. T Consensus 51 a~~ia~~----p~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~--~~---~~-~~~~~ 119 (395) T protein:vir:40 51 ANTLSCA----EVLTYEKG-EEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDE--YI---YV-ADSFT 119 (395) T ss_pred HHHHhhC----ceeeccCC-ccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecC--ce---ee-cCCcc Confidence 3433322 33332111 1111122223321 11 1111233455556667777544322 21 11 11111 Q ss_pred EEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeec Q lcl|Aclame:pro 156 PLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTIS 235 (508) Q Consensus 156 Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~ 235 (508) +.... ... ..|+.+.. + .|.+. ..|.. .++. T Consensus 120 ~~~~~---~~~---------------~~~~~v~~----~--~~~~~-~~~~~----------------------~evi-- 150 (395) T protein:vir:40 120 KNDKS---LYE---------------NTYTEVTL----K--DLTLK-KEFKE----------------------SEVL-- 150 (395) T ss_pred ccccc---ccc---------------ceeeeeee----c--Cceee-eeecc----------------------ccEE-- Confidence 11000 000 00100000 0 00000 00000 0000 Q ss_pred CCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHH-HHhccce-eeechHHhcCCCCCCccCCcc- Q lcl|Aclame:pro 236 GLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWE-IRLGQKH-IAVQPGMLRFDDEHKPTFDTE- 312 (508) Q Consensus 236 g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~~~~-i~v~~~~~~~~~~~~~~~~~~- 312 (508) .|.|-.. ...+.+.+.+..+..++ +...+. +..+.++ +.+.......+++....+... T Consensus 151 -----h~r~~~~-------~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 211 (395) T protein:vir:40 151 -----HLTLNNE-------SIKSIIDGFYLLYGDLL-------TAAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLML 211 (395) T ss_pred -----EeecCCC-------CccccchhHHHHHHHHH-------HHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH Confidence 0111000 01111112211111111 111111 1122121 111100000000000000000 Q ss_pred cceEeeecCC------CCCCCcceEeeccCCHHHHHH---HHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 313 QNVYVGVLSD------DNNGLGVKDMTTPIRTVQYKD---AIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMT 383 (508) Q Consensus 313 ~~~~~~~~~~------~~~~~~i~~~~~dir~e~~~~---~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l 383 (508) .+.|.+.... -+++..++.++.+....+..+ .-+.+.++|....|++|+.++.+. .+.++. . T Consensus 212 ~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~~---sn~e~~---~--- 282 (395) T protein:vir:40 212 SERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDT---VGLSEQ---V--- 282 (395) T ss_pred HHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCC---cCHHHH---H--- Confidence 0001110000 012223444444333333332 223345678888999999885221 111111 1 Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 384 YQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSK 463 (508) Q Consensus 384 ~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~ 463 (508) ...++.+|..++..|..-.+. .++.... ....+.+.++++.-+..|.++.++...+++..|+|+. T Consensus 283 -------~~f~~~~L~P~~~~ie~~l~~-kLl~~~~-------~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~ 347 (395) T protein:vir:40 283 -------NSFLMFSINPIAEMFTDEGNR-KFYGRDS-------VLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTI 347 (395) T ss_pred -------HHHHHHHHHHHHHHHHHHHHH-hcCChhh-------hcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCH Confidence 112333333333333221111 0111100 0112457777777778898999988889999999999 Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHhccCCCCCCcccc-cCCCCCCC Q lcl|Aclame:pro 464 QTFLQRN--YGMTDEQAAEELAKIQSEAPTDTFEGGRSA-ILNGGDGE 508 (508) Q Consensus 464 et~l~~~--~~~~deea~~e~~ri~~E~~~~~~~~~~~~-~~~~~~g~ 508 (508) -+++... +-++..+..+-.-... -.+.......+.+ ..++.+|+ T Consensus 348 NE~R~~~g~~pi~~~~gD~~~~~~n-~~~~~~~~~~~kgge~~~~~~~ 394 (395) T protein:vir:40 348 DDNLRMIGREPVMSPETQERFVTKN-YAPLGENEEDLKGGDINENKGD 394 (395) T ss_pred HHHHHHhCCCCCCCCCCceeeeccc-cccccccccccCCCCCCCCcCC Confidence 9988753 3332222221111000 0111111111111 11112233 No 227 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=90.12 E-value=0.023 Score=29.62 Aligned_cols=385 Identities=12% Similarity=0.082 Sum_probs=144.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) =+++.+||+.|. .+..... .+. ...|..| .+.. +..+... ......-- T Consensus 4 ~~~~~~~k~~~~------------~~~~~~~---~~~-----~~~~~~~-~~~~----~~~v~~~----~a~~~~~v~~~ 54 (409) T protein:vir:94 4 ENIVTRIKKKLI------------DNWIDQS---ASK-----LYDFSPW-KNKS----FWGVINN----TLETNETIFSA 54 (409) T ss_pred cccchhhhhHHh------------hhhhcCC---ccc-----ccccccc-cCcc----ccccchh----hhhccHHHHHH Confidence 234444444331 1111100 010 0011111 1110 0000000 00011111 Q ss_pred -HHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEE Q lcl|Aclame:pro 78 -KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWV 149 (508) Q Consensus 78 -~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v 149 (508) ..|++..|++ |+.+--..+. .+..+..+|.. | .-..-...++...+..|.+++.+..+. |. +.+..+ T Consensus 55 i~~Ia~~ia~l----p~~~~~~~~~-~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l 129 (409) T protein:vir:94 55 ITKLSNSMASL----PLKMYEDYKV-VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLL 129 (409) T ss_pred HHHHHHhhhhC----ceeEeecccc-cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 2344444433 3333211111 11122223321 1 122234455677788899888777654 44 356677 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+.+-++..+++.. .|..+. .. .|. .+. +|. T Consensus 130 ~~~~v~v~~~~~~~~------------------~~y~~~---~~-~g~------------------~~~---~~~----- 161 (409) T protein:vir:94 130 NPDVVEMLIENQSRE------------------LYYSIH---AA-TGN------------------KLI---VHN----- 161 (409) T ss_pred cCceeEEEEeCCCcE------------------EEEEEE---cC-Cce------------------EEE---Ecc----- Confidence 788776543222211 110000 00 010 000 000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccC Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTF 309 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~ 309 (508) .+ ..++|.+.. .+...|+|.+.-+...|+.....-......+..+..-++....-+ +++....+ T Consensus 162 ~d----------vih~r~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l--~~e~~~~~ 225 (409) T protein:vir:94 162 MD----------MLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNV--GKEKRQQV 225 (409) T ss_pred cc----------EEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEecCCCC--CHHHHHHH Confidence 00 233432211 123358888776666666443322221111111111121111111 11110000 Q ss_pred Ccc-cceEe---eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHH Q lcl|Aclame:pro 310 DTE-QNVYV---GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTY 384 (508) Q Consensus 310 ~~~-~~~~~---~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~ 384 (508) ... ...+. ++..- +++..++.++......++.+..+....+|....|++|..++....+. .+.++.... T Consensus 226 ~~~~~~~~~~~g~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~----- 299 (409) T protein:vir:94 226 LEDFKQYYEENGGILFQ-EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRF----- 299 (409) T ss_pred HHHHHHHhhcCCCeeec-CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH----- Confidence 000 00010 00000 12223555554444556777777778899999999999988654332 222222111 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQ 464 (508) Q Consensus 385 ~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~e 464 (508) .++.+|..++..|-.-.+.. ++... .......+.|+.+.-+..|..+.++...+++.+|+|+.- T Consensus 300 --------f~~~~l~P~~~~ie~~ln~~-Ll~~~-------~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~N 363 (409) T protein:vir:94 300 --------YLQHTLLPIVKQYEEEFNRK-LLTKT-------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIN 363 (409) T ss_pred --------HHHHHHHHHHHHHHHHHHHh-hCCcc-------cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 12222333333322111110 11100 001123455555565667889999999999999999999 Q ss_pred HHHHhcCCCCHHH-HHHHHHHHHHh-ccCCCCCCcccccCCC-CCCC Q lcl|Aclame:pro 465 TFLQRNYGMTDEQ-AAEELAKIQSE-APTDTFEGGRSAILNG-GDGE 508 (508) Q Consensus 465 t~l~~~~~~~dee-a~~e~~ri~~E-~~~~~~~~~~~~~~~~-~~g~ 508 (508) +++... |+++-+ .++-+- ... .+.+.....+....|| .+++ T Consensus 364 E~R~~~-g~~p~~ggD~~~~--~~n~~~~~~~~~~~~~~kGG~~n~~ 407 (409) T protein:vir:94 364 DIREWE-DLPPVEGGDKPLI--SGDLYPIDTPLELRKSLKGGDKNVN 407 (409) T ss_pred HHHHHh-CCCCCCCcCeEee--cccccccccchhhcccccCCCCCcC Confidence 988653 443311 111010 000 0111111111111111 1111 No 228 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=89.88 E-value=0.024 Score=29.48 Aligned_cols=378 Identities=13% Similarity=0.106 Sum_probs=146.3 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccc-c-chHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNT-I-NMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~-~-n~~~ 78 (508) ||+|++-+. ...+.++ -|..++.|.... .+...... +++ + ---. T Consensus 1 m~~f~~~~~---------------------~~~~~~~-------~~~~~~~~~~~~-~~~~~~Al-----~~~~V~~~i~ 46 (406) T protein:vir:97 1 MSFFQPLGT---------------------SKVSYDD-------YISSVLAGDVSQ-KYLGVSAL-----KNSDILTATS 46 (406) T ss_pred CccccccCC---------------------CCCCcch-------HHHHHhcCCCCc-ccccchhh-----ccHHHHHHHH Confidence 888763100 0111111 133344443221 00000000 000 0 0113 Q ss_pred HHHHHHHHhhhcCcceEeeCCcH-HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC--Cee-EEEEE Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEIHVKDNN-EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG--NHI-KIAWV 149 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i~~~~~~-~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~-~i~~v 149 (508) .|++..|++ |+.+.-.+.+ ..+..+..+|.. | ....-.+.++...+..|.+++.+..+. |.+ .+..+ T Consensus 47 ~Ia~~iA~l----p~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i 122 (406) T protein:vir:97 47 IIAGDIARF----PLVKKDVNGDIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFY 122 (406) T ss_pred HHHHhhhhC----eeEEEecCccccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEE Confidence 355555544 4433221211 112223444431 2 122344455677777898888776653 443 67778 Q ss_pred cCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +|+++-+...+++++ .|+.- . ..+| ..+. ++ . T Consensus 123 ~p~~v~v~~~~~~~~------------------~y~~~---~-~~~~------------------~~~~---~~-----~ 154 (406) T protein:vir:97 123 RPSETTVEETDNHEI------------------VYTFT---D-MLTA------------------KQVK---CF-----A 154 (406) T ss_pred CCCeeEEEEcCCceE------------------EEEEE---e-cCCc------------------eEEE---Ec-----c Confidence 888876542222221 11100 0 0000 0000 00 0 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee-chHHhcCCCCCCc Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV-QPGMLRFDDEHKP 307 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v-~~~~~~~~~~~~~ 307 (508) .+ ..++|.+-. +...|+|.+.-+...|.....+-....+-|+.| .+.+++ +...+ +++... T Consensus 155 ~e----------vih~r~~~~-----dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l--~~e~~~ 217 (406) T protein:vir:97 155 HD----------VIHWKFFSH-----DTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQL--SGDARQ 217 (406) T ss_pred cc----------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCC--CHHHHH Confidence 00 123332111 123488888877777665444333333445543 444433 11111 111111 Q ss_pred cCCcc-cceEeeecCCC----CCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHH Q lcl|Aclame:pro 308 TFDTE-QNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) Q Consensus 308 ~~~~~-~~~~~~~~~~~----~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~ 382 (508) .+... .+.+.+-+.+. +++..++.++......++++..+...+.|....|++|..+|...+...++.....- T Consensus 218 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~~f--- 294 (406) T protein:vir:97 218 RARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLMEDY--- 294 (406) T ss_pred HHHHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHHHH--- Confidence 00000 00111100000 12223454544444445666666667889999999999997543322111111111 Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 383 TYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALS 462 (508) Q Consensus 383 l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s 462 (508) ...++.-....++.+|..- ++.... ...+.+.++.. .+....++...+++..|+|+ T Consensus 295 ~~~~l~P~~~~ie~~l~~k------------ll~~~~--------~~~~~i~fd~~----~~~~~~~~~~~~~~~~g~~T 350 (406) T protein:vir:97 295 VTNDLPFYFDAITSELGLK------------TLNDKD--------RRLYHIEFDTR----SVTGRNVDEIVKLVNNQILT 350 (406) T ss_pred HHHHHHHHHHHHHHHHhhh------------hcChhh--------ccceeEEEecC----ccchhhHHHHHHHHhCCCcC Confidence 1112222222233332211 111000 01122333322 34455566777888999999 Q ss_pred HHHHHHhc--CCCCHHHHHHHH-----HHHH-HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 463 KQTFLQRN--YGMTDEQAAEEL-----AKIQ-SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 463 ~et~l~~~--~~~~deea~~e~-----~ri~-~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..+++... +-+.+....+-+ ..+. .++..+......-++++++.|| T Consensus 351 ~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 404 (406) T protein:vir:97 351 PNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKKEEYQDKVGIKGKGGEVNAEED 404 (406) T ss_pred HHHHHHHhCCCCCCCCCCCeEeeccCccchhcccccccccccccCCCCCCCCCC Confidence 99988763 222111111100 0000 0111111111223334344444 No 229 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=89.84 E-value=0.024 Score=29.46 Aligned_cols=431 Identities=12% Similarity=0.102 Sum_probs=159.6 Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCH-HHHHHHHHHHHHhcC----CCc----cccCccCCCcccccccc- Q lcl|Aclame:pro 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDP-DEYVRIQTDLDYYSD----KLQ----YIHYQASDGIKKKRLKN- 72 (508) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~i~~~~~~Y~g----~~~----~~~~~~~~~~~~~~~~~- 72 (508) |+.++-+.|.+----.+ +..+.. +..++-+. +...+|+....-+.. +.. ++-.....+.....++. T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~ 76 (576) T protein:vir:96 1 MVTRLADIFKRLRLGRD-YEDIID---TVPIDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSY 76 (576) T ss_pred ChhhHHHHHHHHhccCc-cccchh---hhhcccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcc Confidence 66665554432110000 011000 11111100 122223221111110 000 00000000000000000 Q ss_pred -c--------------cchH----HHHHHHHHHhhhc----C---cceEeeC-------CcHH-HHHHHHHHHH----h- Q lcl|Aclame:pro 73 -T--------------INMA----KTAARRIASVVFN----E---KAEIHVK-------DNNE-ADKFLNDVLE----D- 113 (508) Q Consensus 73 -~--------------~n~~----~~iv~~~A~ll~~----e---~~~i~~~-------~~~~-~~~~l~~~l~----~- 113 (508) . -++. ..|++..|.|... + +..|... +.+. ....+...+. . T Consensus 77 ~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 156 (576) T protein:vir:96 77 MKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDK 156 (576) T ss_pred hhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCC Confidence 0 0122 3444444443210 0 0111111 1111 1112233222 1 Q ss_pred ----hhHHHHHHHHHHHHhhcCCEEEEEEEeC---Ce-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE Q lcl|Aclame:pro 114 ----NDFKNKFEEALEKGVALGGFAMRPYIDG---NH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT 185 (508) Q Consensus 114 ----n~f~~~~~~~~~~a~~~G~~~~~~~~d~---~~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt 185 (508) ..+...+..++...+..|.+++.+.++. |+ +.+-.++|..+-++..+++.+ |+ T Consensus 157 ~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~-------------------~~ 217 (576) T protein:vir:96 157 DIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKI-------------------IK 217 (576) T ss_pred CCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCce-------------------ee Confidence 1244556667778889999998877652 33 357778898887764333322 11 Q ss_pred EEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhh Q lcl|Aclame:pro 186 LLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVD 265 (508) Q Consensus 186 ~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~ 265 (508) +..++....++.... .| + ..++ .++ .++|..+ .....+|+|.+. T Consensus 218 ~~~~~~~~~~~~~~~---~~------------~----------~~di-------i~~--~~~~~~d--~~~~~~G~Spi~ 261 (576) T protein:vir:96 218 GGKRFVQVINKKVVA---SF------------T----------SREM-------AMG--IRNPRTE--LSSSGYGLSEVE 261 (576) T ss_pred eeeEEEEecCCceEE---Ee------------c----------ccce-------EEE--eecCCCC--cccCcccccHHH Confidence 111111000111000 00 0 0000 011 1122111 112457999988 Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcCCCCCCccCCcc-cceEeeec------CCCCCCCcceEeecc Q lcl|Aclame:pro 266 NAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVL------SDDNNGLGVKDMTTP 335 (508) Q Consensus 266 ~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~d 335 (508) -+...|......-....+-|+.| .+.-++ |... .-+++....+... ...|.+.. .--+++..++.++.. T Consensus 262 ~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~-~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~ 340 (576) T protein:vir:96 262 IAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQ-QQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPT 340 (576) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC-CCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCC Confidence 88877766554444444445654 555333 2110 0011110000000 00111110 000122346666666 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 336 IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS-YLTMVEKAIDELCQSIFELANAGAL 414 (508) Q Consensus 336 ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~-~~~~~~~al~~li~~i~~l~~~~~~ 414 (508) ....++.+..+...+.|....|++|..+|+...+.++++..... .++.++.. ....++.+|..++..|....+.. + T Consensus 341 ~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s--~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~-L 417 (576) T protein:vir:96 341 ANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNT--LNEADPGKKQQQSQNKGLQPLLRFIEDLINTH-I 417 (576) T ss_pred hhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHhh-h Confidence 66677888888889999999999999999875543332111111 01111111 12234444555544443322211 1 Q ss_pred ccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHHH--------------- Q lcl|Aclame:pro 415 FDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQ--------------- 477 (508) Q Consensus 415 ~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~dee--------------- 477 (508) +.. ...++.+.|...-..++.+.. .......+|+|+.-+++... +-+..-+ T Consensus 418 l~~-----------~~~~~~~~f~r~d~~~~~e~~-~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~ 485 (576) T protein:vir:96 418 ISE-----------YSDKYVFQFVGGDTKSELDKI-KILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNT 485 (576) T ss_pred chh-----------ccCceEEEeccCCHHHHHHHH-HHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccc Confidence 110 012356677665443332222 33344567999999988753 2221100 Q ss_pred ---------HHHHHHHHHHh-ccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 478 ---------AAEELAKIQSE-APTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 478 ---------a~~e~~ri~~E-~~~~~~~~~~~~~~~~~~g~ 508 (508) .++-+....+. +..+...+...+.....+|+ T Consensus 486 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~ 526 (576) T protein:vir:96 486 QKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGR 526 (576) T ss_pred cCCCCCCccccccccccccccCCCCCCCCCCCCCCCccccc Confidence 00000000000 00000000000111111111 No 230 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=89.63 E-value=0.025 Score=29.34 Aligned_cols=405 Identities=11% Similarity=0.101 Sum_probs=157.8 Q ss_pred CChH-HH----HHH-HHHHHHHhhhhhhhh-HHhhccccccCCHHHHHHHHHHHHHhcCCCcccc--CccCCCccccccc Q lcl|Aclame:pro 1 MGLI-QR----IKD-LFWKGAAATGVTGSL-SKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIH--YQASDGIKKKRLK 71 (508) Q Consensus 1 m~~~-~~----ik~-~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~--~~~~~~~~~~~~~ 71 (508) |+-| +. |++ .+++..+. ....+ ..+.+|+--.+++.++..|.+-.. .|+..... +... ..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~gltp~~l~~iLr~a~--~gd~~~~~~L~e~m-----~e~- 70 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTS--RLAGLAKEFAQHPAKGLTPAKLARILVEAE--QGNLQAQAELFMDM-----EER- 70 (526) T ss_pred CCeeECCCCCccccccccchhhh--hhhhhhhhhcccCcCCCCHHHHHHHHHhhh--CCCHHHHHHHHHHH-----Hhh- Confidence 2210 00 000 00000000 00000 011122222334444333332210 01100000 0000 000 Q ss_pred cccchHHHHHHHHHHhhhcCcceEeeCC-c----HHHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCCEEEEEEEeC--Ce Q lcl|Aclame:pro 72 NTINMAKTAARRIASVVFNEKAEIHVKD-N----NEADKFLNDVLEDN-DFKNKFEEALEKGVALGGFAMRPYIDG--NH 143 (508) Q Consensus 72 ~~~n~~~~iv~~~A~ll~~e~~~i~~~~-~----~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~ 143 (508) -.-+...+-... .-|++-+..|.-.. + ....+++++++.+. +|...+..++ .|..+|-+++-..|+. |. T Consensus 71 -D~~i~s~l~~Rk-~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~ 147 (526) T protein:vir:99 71 -DAHLFAEMSKRK-RAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGRE 147 (526) T ss_pred -ChHHHHHHHHHH-HHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecCCc Confidence 011222232222 33445556665321 1 12335788888653 4777776665 5888898888777753 22 Q ss_pred e---EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccc Q lcl|Aclame:pro 144 I---KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLS 220 (508) Q Consensus 144 ~---~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~ 220 (508) . .+.++++..|. +...+..++. ++... .-|.+ T Consensus 148 ~~~~~l~~r~~~~f~------------------------------------~~~~~~~~l~---~~~~~--~~g~~---- 182 (526) T protein:vir:99 148 WMPLAFHHRPQSWFQ------------------------------------LNPEDQNELR---LRDNS--PAGEA---- 182 (526) T ss_pred eeEEEeeeeccccee------------------------------------eccCCCcEEE---ecCCC--CCcee---- Confidence 2 12333332221 0000000000 00000 00111 Q ss_pred ccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHh Q lcl|Aclame:pro 221 TLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGML 299 (508) Q Consensus 221 ~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~ 299 (508) -|++.|+-. ..+...++|.|.|.+..|.-..--=...+..|+.=+ +.|.|..++ T Consensus 183 ------------------l~~~k~i~~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig----- 237 (526) T protein:vir:99 183 ------------------LQPFGWIIH--RPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG----- 237 (526) T ss_pred ------------------ecCCCeEEE--eecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEE----- Confidence 111222110 123344678899999887643332232334444333 357776655 Q ss_pred cCCCC-C---CccCCcc-----cceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhccccccc Q lcl|Aclame:pro 300 RFDDE-H---KPTFDTE-----QNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG 369 (508) Q Consensus 300 ~~~~~-~---~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 369 (508) +++.. . +..+... .+-...+.. +.-|+.++.. -..+.|.+.++.+=++|+..+ ++...-++.++| T Consensus 238 ky~~~a~~~ek~~L~~av~~i~~d~~~iiP~----~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtlTs~~~~g 312 (526) T protein:vir:99 238 KYPPGTADEEKATLLRAVTGLGHAAAGIIPE----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTLTSTTSQS 312 (526) T ss_pred ecCCCCCHHHHHHHHHHHHHHhhCcEEEecC----CceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhhccccccC Confidence 22211 1 1100000 000111111 1235555432 334556666666666665443 443322222111 Q ss_pred -cch-H-HHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCH Q lcl|Aclame:pro 370 -VKT-A-TEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNK 445 (508) Q Consensus 370 -~~T-A-tei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~ 445 (508) ..| | -++- +.-....+..-.+.+...|. +|++.++.+.- + .......-+.+.|+..-+.|. T Consensus 313 ~~gS~a~g~vh--~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~-------~------~~~~~~~~p~~~~~~~e~eDl 377 (526) T protein:vir:99 313 GGGAFALGQVH--NEVRHDLLASDARQLAATLSRDLLWPLLVLNR-------P------GSPDVRRAPRLVFDLREQADI 377 (526) T ss_pred cchhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C------CcCCccccceEEeCCCCcccH Confidence 111 1 1111 11122334445566777774 58887776521 0 000112235677888788888 Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCC-CCcccccCCCCCC----C Q lcl|Aclame:pro 446 DKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF-EGGRSAILNGGDG----E 508 (508) Q Consensus 446 ~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~-~~~~~~~~~~~~g----~ 508 (508) .+.++.+.+++..|+--...++.+.+|+++.+-.+.+-.-....+.... .+..........+ + T Consensus 378 ~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) T protein:vir:99 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGD 445 (526) T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcc Confidence 8889999999999985555778888888653322222110000000000 0000000111111 1 No 231 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=89.03 E-value=0.029 Score=29.04 Aligned_cols=432 Identities=13% Similarity=0.151 Sum_probs=181.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhc--ccc----ccCC-------------HHHHHHHHHHHHHhcCCCccccCcc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITD--DPR----ISID-------------PDEYVRIQTDLDYYSDKLQYIHYQA 61 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~--~~~----i~~~-------------~~~~~~i~~~~~~Y~g~~~~~~~~~ 61 (508) ||+ ++++. .++ ...+.++.- +.+ +..+ ....+-|++++.++ T Consensus 5 fgf------~~~~~-~~~--~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma----------- 64 (558) T protein:vir:10 5 FGF------SIEET-QKK--STSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMA----------- 64 (558) T ss_pred hcc------hhhhh-hhh--ccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHh----------- Confidence 222 11000 000 011111100 000 0000 00111122222221 Q ss_pred CCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 62 SDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDNDFKNKFEEALEKGVA 129 (508) Q Consensus 62 ~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~f~~~~~~~~~~a~~ 129 (508) ..+-....++..++=+. .+|+++.+++-+ ...+..+.++.--+|.++..+.+..... T Consensus 65 -----------~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYV 133 (558) T protein:vir:10 65 -----------LHPEADGAIEDVVNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYV 133 (558) T ss_pred -----------hccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhee Confidence 11222233333333221 235566654321 2233455566666899999999999999 Q ss_pred cCCEEEEEEEeC-----CeeEEEEEcCCeEEEEEEc---CCCeEEEEEEEEEEEeecCCcEEE-EEEEEEEEeCCceEEE Q lcl|Aclame:pro 130 LGGFAMRPYIDG-----NHIKIAWVRADQFYPLQSN---TNDISEAAIASRTQRTESNQTKYY-TLLEFHQWQDNGSYQI 200 (508) Q Consensus 130 ~G~~~~~~~~d~-----~~~~i~~v~a~~~~Pi~~d---~~~~~~~~f~~~~~~~~~~~~~~y-t~lE~h~~~~~g~~~I 200 (508) -|..+||-++|. |-..+.+++|.++-++.-- ......+.-+ .+..+.+++ ..-||+.+...+. T Consensus 134 DgRiyfHKiid~k~pk~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~eyy~Y~~~~~--- 205 (558) T protein:vir:10 134 DGRVFYLKVIDTKNPQEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRV-----RSEQDVVPNPEFEEFYIYTPKVQ--- 205 (558) T ss_pred eeEEEEEEEEeCCCccccceeeeeeCcccceeeeeeccccccccceeee-----ecccceeeccceeEeeeecCCcc--- Confidence 999999999984 4456888999988665321 1111111100 000111111 1112322221110 Q ss_pred EEEEEecCCccccCccccccccccccCCCcceee--cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHH Q lcl|Aclame:pro 201 TNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI--SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTH 278 (508) Q Consensus 201 ~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~--~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~ 278 (508) +.+.....++..-++ .+|. ..+++ +|+-.. | ...=+|-+.+|.--...|=-.- T Consensus 206 ----~~~~~~~~~~~~~~v-kI~~-----dAI~y~hSGL~d~----------~-----~~~i~syLhkAIKp~NQLkmlE 260 (558) T protein:vir:10 206 ----HPTGMVGQMGGKNSI-KIAK-----DSITMCTSGLVDR----------N-----KNRVLSYLHKAIKALNQLRMIE 260 (558) T ss_pred ----cccccceeecCCCce-eech-----hheeeecccceec----------C-----CCeeeecchHhhHhHHhhHHHH Confidence 000000000000010 0000 00111 121100 0 0011244444443333332222 Q ss_pred HHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCc Q lcl|Aclame:pro 279 DQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLG 328 (508) Q Consensus 279 s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 328 (508) +.+ .+--|.-..|||- .- .+++ ||..++.. .+++.+..+. -+++.+.- T Consensus 261 DAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev--~ddrk~msMlEDyWLpRReGgrgTE 338 (558) T protein:vir:10 261 DSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEV--RDDRKFMSMMEDFWLPRREGGRGTE 338 (558) T ss_pred hhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCcee--cccchhhhhHhhhcccccCCCCccc Confidence 222 2223455566663 11 1110 23333332 1222222221 12223334 Q ss_pred ceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 VKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-GVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFE 407 (508) Q Consensus 329 i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~ 407 (508) |+++..--.. .-+..++-+.+.++...+.+.+-+...++ ...-++||.-..-....-+..++..|..-|.++++.=|. T Consensus 339 ItTLpGgqnL-gem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLi 417 (558) T protein:vir:10 339 ITTLPGGQNL-GELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLV 417 (558) T ss_pred eeeccccCCc-chHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 6665543221 23456677778888888888877766543 223456676666555566666677777777777665443 Q ss_pred HHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 408 LANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQA 478 (508) Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea 478 (508) |-. .+. .-.+..... .|.++|. ....+=.+.++-+.+. +. ..+ ..|.+++.++....||+|. T Consensus 418 lKg---iit----~eeW~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI 488 (558) T protein:vir:10 418 LKN---IVT----PEDWKTMED--HIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEI 488 (558) T ss_pred hcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHH Confidence 311 111 111111122 3444444 3333333333322211 11 112 4589998899999999999 Q ss_pred HHHHHHHHHhccCCCCC-CcccccCC------CCCCC Q lcl|Aclame:pro 479 AEELAKIQSEAPTDTFE-GGRSAILN------GGDGE 508 (508) Q Consensus 479 ~~e~~ri~~E~~~~~~~-~~~~~~~~------~~~g~ 508 (508) +++-++|++|....-.. +.+.+++. ++||+ T Consensus 489 ~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~ 525 (558) T protein:vir:10 489 EEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPA 525 (558) T ss_pred HHHHHHHHHHHhCCCCCCccccChhhccccCccCCch Confidence 99999999986432211 11111111 12222 No 232 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=88.72 E-value=0.031 Score=28.88 Aligned_cols=292 Identities=10% Similarity=0.026 Sum_probs=100.9 Q ss_pred EEEEEEc--CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcc Q lcl|Aclame:pro 154 FYPLQSN--TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQ 231 (508) Q Consensus 154 ~~Pi~~d--~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~ 231 (508) ++-+.|. .|...-..+..+ ..++.. +..+.+.+. .+.+..-+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r-------~~~~~~---~f~~~~~~~------------------l~~~~~~~~------- 45 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWR-------PPRTIS---RFDVAPDGG------------------LVAIEQWGV------- 45 (355) T ss_pred CeEEEEEeeCCeEEEeeeeec-------Ccccee---eeeeccCCc------------------eeEEEecCC------- Confidence 2222221 111100000000 000000 000111110 000000000 Q ss_pred eeecCCCcce--EEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH-h--ccceeeechHHhcCCCCCC Q lcl|Aclame:pro 232 VTISGLQRPL--FAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-L--GQKHIAVQPGMLRFDDEHK 306 (508) Q Consensus 232 ~~~~g~~~~~--f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~--~~~~i~v~~~~~~~~~~~~ 306 (508) ....+++-|. |..++ .+...++|+|.|.+..|.-..--=...+..|+.-++ . +-+...+|...-..+.+.. T Consensus 46 ~g~~~~~lp~~kfi~~~----~~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~ 121 (355) T protein:vir:78 46 FGKATVRIPVDRLVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTA 121 (355) T ss_pred CCCCcceeccCCEEEEE----eCCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhh Confidence 0001111122 22221 123456799999999877533222223333333232 3 4444444421100000000 Q ss_pred ---ccCCc--------------ccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccc--c Q lcl|Aclame:pro 307 ---PTFDT--------------EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYS--N 367 (508) Q Consensus 307 ---~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~--~ 367 (508) ..... +......+. .+..++.+...-....+...++.+=++|+... ++....+.. + T Consensus 122 ~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip----~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~i-LGqtlTs~~~~~ 196 (355) T protein:vir:78 122 RAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP----HGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAHFLTLGGDKS 196 (355) T ss_pred hHHHHHHHHHHHHHHHHHHhhCCcceeEeec----CCceEEEeecCCCcccHHHHHHHHHHHHHHHH-hhhhhccccCCc Confidence 00000 000011111 11124444333333334455555555665444 343222221 1 Q ss_pred cccchHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHH Q lcl|Aclame:pro 368 DGVKTATEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKD 446 (508) Q Consensus 368 ~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~ 446 (508) +|...+-++- ..-....+.+-.+.+...|. +||+.++.+- .+ . ...-+.|.|+. +..+.. T Consensus 197 gGS~Alg~vh--~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN-------~~-----~----~~~~P~~~~~~-~~~~~~ 257 (355) T protein:vir:78 197 TGSYALGDTF--ASFFTGSLNAVMKHIADVTQQHVVEDLVDQN-------WG-----P----EEPAPRLVPAQ-LGKEQP 257 (355) T ss_pred cchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC-----C----CCCCCEEEecC-cChhHH Confidence 1211111221 12223334445566677774 5777766541 00 0 01124566764 555656 Q ss_pred HHHHHHHHHHhCCCCCH----HHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccC-CCCCCC Q lcl|Aclame:pro 447 KQLEEDAKVLAIGALSK----QTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL-NGGDGE 508 (508) Q Consensus 447 ~e~~~~~~~~~~Gi~s~----et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~-~~~~g~ 508 (508) +.++.+.+++..|+... +.++.+.+|+.+-+..++...-.++............+. ..+++. T Consensus 258 ~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (355) T protein:vir:78 258 VTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALP 324 (355) T ss_pred HHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccCCcccccccc Confidence 67778888999997654 457888888754211111110011111111100000000 001111 No 233 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=88.68 E-value=0.031 Score=28.87 Aligned_cols=334 Identities=13% Similarity=0.109 Sum_probs=115.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc-chHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI-NMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~-n~~~~ 79 (508) ||+|.+++.+-++-... ..+.++... .-+ + .|+. + .+ .--.. T Consensus 1 Mg~f~~~~~~~~~~~~~-----~~~~~~~~~--~~~------~-----~~~~--~-----------------~v~~~v~~ 43 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNN-----DTQRVTAWQ--NEA------V-----EYTS--A-----------------FVTNIHNK 43 (378) T ss_pred CCccccchhcccccccC-----Ccceeeeec--cch------h-----HHHH--H-----------------HHHHHHHH Confidence 99999998854321111 111111000 000 0 0000 0 00 01123 Q ss_pred HHHHHHHhhhcCcceE-eeCCcH--------HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEI-HVKDNN--------EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIK 145 (508) Q Consensus 80 iv~~~A~ll~~e~~~i-~~~~~~--------~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~ 145 (508) |++..|++ |+.+ .-..++ ..+--|..+|.. | ....-...++..++-.|.+++.+.+++..-+ T Consensus 44 IA~~iA~l----p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~ 119 (378) T protein:vir:94 44 IANEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE 119 (378) T ss_pred HHhhhhhC----ceeeEEEcccCcccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCce Confidence 34444433 2221 100000 001112233321 1 1122334456667777888876655542111 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) .+++...++.+ .|..=| T Consensus 120 --------~~~l~p~~~~~------------------~~~~~d------------------------------------- 136 (378) T protein:vir:94 120 --------LLDLLFADDKK------------------EYKPEE------------------------------------- 136 (378) T ss_pred --------EEEEEecCCee------------------Eeeeee------------------------------------- Confidence 11111111110 010000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHH----- Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGM----- 298 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~----- 298 (508) ..+++.|.. ..-|.|.++.+.. +++.. +..++++-++ |..+ T Consensus 137 ----------------iiH~~~~~~------~~~g~s~l~~~~~---~i~~~-------~~~~~~~gil~~~~~l~~~~~ 184 (378) T protein:vir:94 137 ----------------LVRLTSPFY------INEDTSILDNALA---SIQTK-------LEQGKLRGLLKINAFLDIDNT 184 (378) T ss_pred ----------------eEEecCcCC------ccchhHHHHHHHH---HHHHH-------HhcccccceeeeCCcCCHHHH Confidence 001111100 0012222222211 11111 1112111111 0000 Q ss_pred --------------hcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcc Q lcl|Aclame:pro 299 --------------LRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) Q Consensus 299 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 364 (508) ...+..++..+ . +++..++.++.+....+ +...+.+.++|....|++|..+. T Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~v-----------l--~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVP~~~l~ 250 (378) T protein:vir:94 185 QEYREKALTTIKNMQEGSSYNGLTP-----------V--DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL 250 (378) T ss_pred HHHHHHHHHHHHHhhccccccccee-----------c--CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc Confidence 00000000000 0 11112333333322222 34455666789999999998773 Q ss_pred ccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC Q lcl|Aclame:pro 365 YSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN 444 (508) Q Consensus 365 ~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d 444 (508) . |..+... ...++.+|..++..|..-.+.. ++...... .+.......++.|+++.-...| T Consensus 251 ~------~~se~~~------------~~f~~~tL~P~~~~ie~~l~~~-Ll~~~er~-~g~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:94 251 G------TASQEQQ------------IYFYNSTIIPLLIQLEKELTYK-LISTNRRR-VVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred C------ChHHHHH------------HHHHHHHHHHHHHHHHHHHHhh-cCChhHhh-hhhhcccccceeecchhhhhcC Confidence 1 1112111 1123333444433332221110 11100000 0000001124667777778889 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH-HHHHHH-----HHHHHHhccCCCCCCcccccCCC--CCCC Q lcl|Aclame:pro 445 KDKQLEEDAKVLAIGALSKQTFLQRNYGMTD-EQAAEE-----LAKIQSEAPTDTFEGGRSAILNG--GDGE 508 (508) Q Consensus 445 ~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d-eea~~e-----~~ri~~E~~~~~~~~~~~~~~~~--~~g~ 508 (508) .++.++.+.+++..|+|+.-+++... |+.+ +..++- +..+ +.+. ..+....+..++ .+++ T Consensus 311 ~~~~~~~~~~~~~~G~~T~NE~R~~~-gl~p~~gGD~~~~~~n~~~~--~~~~-~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 311 LKELIDLYHENINGPIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAV--KNLS-DLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCeeeeccccccc--ccch-hhcCCcCCCCCCCCCCCC Confidence 99999999999999999999988753 3322 111110 0000 0000 011111111112 2222 No 234 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=88.22 E-value=0.034 Score=28.66 Aligned_cols=372 Identities=12% Similarity=0.124 Sum_probs=139.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc-chHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI-NMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~-n~~~~ 79 (508) ||||+ +|++.... . + . ++ +. | +..+... ......+.. ..+- +--.. T Consensus 1 Mg~~~----~f~~k~~~--------~----~--~-~~-----~~-~--~~~~~~~--~~~~~~~~~----~~~~~~~V~~ 47 (403) T protein:vir:80 1 MGLFN----FFRRKTRS--------E----P--T-NA-----IS-W--FLTQEAY--DTLAIPGYT----RLSDNPEVRM 47 (403) T ss_pred Ccccc----cccccccc--------c----c--c-ch-----hh-h--hcccccc--cccccchhh----hhhhhHHHHH Confidence 99986 45431100 0 0 0 00 00 0 1111100 000000100 0110 11112 Q ss_pred HHHHHHHhhhcCcceEeeC--C-cHHHHHHHHHHHH--hhhH---HHHHHHHHHHHhhc--CCEEEEEEEeC-Cee-EEE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIHVK--D-NNEADKFLNDVLE--DNDF---KNKFEEALEKGVAL--GGFAMRPYIDG-NHI-KIA 147 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~~~--~-~~~~~~~l~~~l~--~n~f---~~~~~~~~~~a~~~--G~~~~~~~~d~-~~~-~i~ 147 (508) .++.+|+-+-.=|+.+--. + ....+..+..+|. -|.. ..-.+.++.+++-. |.+++.+..+. |++ .+. T Consensus 48 ~I~~ia~~iA~~p~~~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~ 127 (403) T protein:vir:80 48 AVHKIAELISSMTIHLMQNTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELI 127 (403) T ss_pred HHHHHHHhhhhCceEEEEecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEE Confidence 2333333333324443111 1 0011111223332 1211 12223334455443 55677776665 443 455 Q ss_pred EEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccC Q lcl|Aclame:pro 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) Q Consensus 148 ~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~ 227 (508) .++|..+-++..+++ |.+.+ .+ ..++- T Consensus 128 ~l~p~~v~~~~~~~g-----------------------------------~~~~y---~~-------~~~~~-------- 154 (403) T protein:vir:80 128 PLAPSKVSFVDTDTG-----------------------------------YQIWY---QG-------KAYNY-------- 154 (403) T ss_pred EEcCCeeEEEEcCCc-----------------------------------eEEEE---ee-------cccch-------- Confidence 667766554322111 11110 00 00000 Q ss_pred CCcceeecCCCcceEEEecC-CccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhcCCC Q lcl|Aclame:pro 228 LAPQVTISGLQRPLFAYFKT-PGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLRFDD 303 (508) Q Consensus 228 l~~~~~~~g~~~~~f~~~~~-~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~~~~ 303 (508) .+ ..+++. +.+.+ .-.|.|.+.-+...+......-.....-|+. +++..++ +..+- + T Consensus 155 --~e----------iih~~~~~~~~~----~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~---~ 215 (403) T protein:vir:80 155 --DE----------VLHFIVNPDPEK----PYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATA---E 215 (403) T ss_pred --hh----------EEEEeccCCCcC----ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC---h Confidence 00 112221 11111 1137787776666666555333333334454 3555443 22211 1 Q ss_pred CCCccCCc-ccceEeee-cCCC-----CCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH Q lcl|Aclame:pro 304 EHKPTFDT-EQNVYVGV-LSDD-----NNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE 375 (508) Q Consensus 304 ~~~~~~~~-~~~~~~~~-~~~~-----~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 375 (508) +....... -.+.|.+. +.+. .+....+.+++ +....+..+..+....+|....|++|..+|..... .++. T Consensus 216 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~--~~~~ 293 (403) T protein:vir:80 216 LSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKYD--KDEY 293 (403) T ss_pred HHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCcc--HHHH Confidence 00000000 00001100 0000 01111233332 33334556666777788999999999988743221 1111 Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 376 VVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKV 455 (508) Q Consensus 376 i~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~ 455 (508) +. .++.+|..++..|..-.+. .++. ..++.+.|+.+.-+..|..+.++...++ T Consensus 294 -----~~----------f~~~~l~P~~~~ie~~l~~-kll~-----------~~~~~~~f~~~~ll~~d~~~~~~~~~~~ 346 (403) T protein:vir:80 294 -----NN----------FINSTILPIAKGIEQELTR-KLLI-----------SPDLYFKFNPRSLYAYDLKELAEVGSNM 346 (403) T ss_pred -----HH----------HHHHHHHHHHHHHHHHHHH-hccC-----------CCCcEEEeechhhhccCHHHHHHHHHHH Confidence 11 2233344444333221111 0111 1223455555565677999999999999 Q ss_pred HhCCCCCHHHHHHhcCCCCHH-HHHHHHHHHHHhccCC--CCCCcccccC-CCCCCC Q lcl|Aclame:pro 456 LAIGALSKQTFLQRNYGMTDE-QAAEELAKIQSEAPTD--TFEGGRSAIL-NGGDGE 508 (508) Q Consensus 456 ~~~Gi~s~et~l~~~~~~~de-ea~~e~~ri~~E~~~~--~~~~~~~~~~-~~~~g~ 508 (508) +.+|+|+.-+++... |+.+- ...+.+.... -.+.+ .......+++ ++.+|+ T Consensus 347 ~~~Gi~t~NE~R~~~-gl~p~~ggd~~~~~~n-~~pl~~~~~~~~~k~ge~~~~~~~ 401 (403) T protein:vir:80 347 YVRGLMEGNEVRDWL-GLSPKEGLSELVILEN-YIPLDKIGDQNKLKGGEKGGADGQ 401 (403) T ss_pred HhCCCcCHHHHHHHh-CCCCCCCCCeEeeccc-ccchhhccchhhccCCCCCCCCCC Confidence 999999999988753 44331 1111110000 00000 0001111222 222333 No 235 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=88.21 E-value=0.034 Score=28.65 Aligned_cols=428 Identities=12% Similarity=0.149 Sum_probs=186.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhc----------cccccCC----------------------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITD----------DPRISID----------------------PDEYVRIQTDLD 48 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~----------------------~~~~~~i~~~~~ 48 (508) ...++.+|.|.+--.... .+.+++-.. ...|.++ ....+-|++++. T Consensus 2 ~~~l~~~~~~~~~d~~~~--~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ 79 (521) T protein:vir:65 2 FSRLKMLARWADFDNDKY--EEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRG 79 (521) T ss_pred ccchhhhhhccCchhhHH--HhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHH Confidence 122222333332111000 011110000 0000000 011111222222 Q ss_pred HhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCc---H----HHHHHHHHHHHhhhH Q lcl|Aclame:pro 49 YYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDN---N----EADKFLNDVLEDNDF 116 (508) Q Consensus 49 ~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~---~----~~~~~l~~~l~~n~f 116 (508) ++ ..+-....++..++=+. .+|+++.+++. + ...+..+.++.--+| T Consensus 80 ma----------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F 137 (521) T protein:vir:65 80 LM----------------------NNHEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQF 137 (521) T ss_pred Hh----------------------hccchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhcc Confidence 21 11222233333333221 23566665432 1 123445666666689 Q ss_pred HHHHHHHHHHHhhcCCEEEEEEEeC----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE-EEEEEE Q lcl|Aclame:pro 117 KNKFEEALEKGVALGGFAMRPYIDG----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT-LLEFHQ 191 (508) Q Consensus 117 ~~~~~~~~~~a~~~G~~~~~~~~d~----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt-~lE~h~ 191 (508) .++..+.+.....-|..+||..+|. |-..+..++|.++-++..... .+..+...+. ..|++. T Consensus 138 ~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~ELr~lDPr~i~~vr~i~k-------------~~~~~~~v~~~~~e~f~ 204 (521) T protein:vir:65 138 DRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIIT-------------EDTPEGKIYKATKEYFI 204 (521) T ss_pred chhhhHHHhhhhhcceeEEEEEEcCCccccceeeeeeCCcceeeeeeecc-------------cccCCcceecceeeeee Confidence 9999999999999999999999873 445788899999887643211 1111111111 112221 Q ss_pred EeCCc-eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHH Q lcl|Aclame:pro 192 WQDNG-SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHV 270 (508) Q Consensus 192 ~~~~g-~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~l 270 (508) +..+. +|......|.. ..+.++|-+.+ .+.-+|+ .+.....=+|-+.+|.-- T Consensus 205 Y~~~~~~~~~~g~~~~~----~~~vkI~~dAI--------~y~hSGl---------------~d~~~~~i~syLhkAiKp 257 (521) T protein:vir:65 205 YTVGNSSYCAGGQVFSP----NSRVKIPRSAI--------TYAHSGL---------------MDCDDKYIIGYLHRAVKP 257 (521) T ss_pred eecCCcceeccceeecC----Ccceeechhhe--------eeeeccc---------------eeCCCCeeeecchhhhHh Confidence 11100 11111111111 01111211111 0001121 011111123444444443 Q ss_pred HHHHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec------- Q lcl|Aclame:pro 271 LDDINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL------- 320 (508) Q Consensus 271 id~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~------- 320 (508) ...|=-.-+.+ .+--|.-..|||- .- .+++ ||..++.. .+++.+..+. T Consensus 258 ~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev--~ddrk~msMlEDyWLpR 335 (521) T protein:vir:65 258 ANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKL--KNQQANLSMTEDYWLQR 335 (521) T ss_pred HHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccc--cccccccchhhhhcccc Confidence 33333222322 2223455566663 11 1110 24433332 1222333221 Q ss_pred CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-c--cchHHHHHHHHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 321 SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-G--VKTATEVVSNNSMTYQTRSSYLTMVEKA 397 (508) Q Consensus 321 ~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~~~~~~l~~~~~~~~~~~~~a 397 (508) -+++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+...++ + ..-++||.-..-....-+..++..|..- T Consensus 336 ReGgrgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiKF~KFI~rLR~rFs~l 414 (521) T protein:vir:65 336 RDGKAITDVTTLPGASGM-SDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTLQSQFSEV 414 (521) T ss_pred cCCCCccceeecccCCCc-ChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHH Confidence 122333346666542222 23466777788888888888887654432 2 1345677666655556666677777777 Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHH Q lcl|Aclame:pro 398 IDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQ 468 (508) Q Consensus 398 l~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~ 468 (508) |.++++.=|.|-. .+.. -.+..... .|.++|. ....+=.+.++-+.+. +. ..+ ..|.+++.+ T Consensus 415 f~~~L~~qLilKg---iit~----eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k 485 (521) T protein:vir:65 415 LRDPLKYNLILKN---VITE----DDWDREIN--NIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMR 485 (521) T ss_pred HHHHHHHhhhhhc---CCCH----HHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHH Confidence 7777665443311 1111 11111112 2445554 3333333333322211 11 112 458999889 Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 469 RNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 469 ~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) +....||+|.+++-++|++|....-...+..+.++= T Consensus 486 ~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 486 DILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred HHhccCHHHHHHHHHHHHHhhhCCCCCCCcccccCC Confidence 999999999999999999998654333221111111 No 236 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=87.64 E-value=0.037 Score=28.41 Aligned_cols=398 Identities=10% Similarity=0.069 Sum_probs=151.7 Q ss_pred hhccccccCCHHHHHHHHHH-----HHHhc--CCCccccCccCCCccccccc--cccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 27 ITDDPRISIDPDEYVRIQTD-----LDYYS--DKLQYIHYQASDGIKKKRLK--NTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 27 ~~~~~~i~~~~~~~~~i~~~-----~~~Y~--g~~~~~~~~~~~~~~~~~~~--~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) -++........-+...+-.. .+.|. ...+.+.. ..+...-... .---++..+ ++....|++-+.+|.- T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~--~~~~~ly~~m~e~D~~i~s~l-~~rk~av~~~~w~v~p 77 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQW--PQSVAVYSRMDNEDSRVTSLL-EAISLPIRSTPWRIRA 77 (469) T ss_pred CCCcccCCCCccchhhhhhcccccchhhcccccccccccc--ccchHHHHHHHhhChHHHHHH-HHHHHHHhcCCceEec Confidence 11111111111111111100 01111 00011100 0000000000 000122222 2223345555556653 Q ss_pred CC-cHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHhhcCCEEEEEEEeC------CeeE---EEEEc Q lcl|Aclame:pro 98 KD-NNEADKFLNDVLED-----------------NDFKNKFEEALEKGVALGGFAMRPYIDG------NHIK---IAWVR 150 (508) Q Consensus 98 ~~-~~~~~~~l~~~l~~-----------------n~f~~~~~~~~~~a~~~G~~~~~~~~d~------~~~~---i~~v~ 150 (508) .+ +++.-+++.+.|.. ..|...+.+.+..|..+|-+++-..|.. |.+. +.+.| T Consensus 78 ~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~rp 157 (469) T protein:vir:10 78 NGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAPRP 157 (469) T ss_pred CCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeeecC Confidence 22 22222334333321 1356677777888888998888777752 3322 22223 Q ss_pred CCeEEEEEEc-CCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCC Q lcl|Aclame:pro 151 ADQFYPLQSN-TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) Q Consensus 151 a~~~~Pi~~d-~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~ 229 (508) +..+--..++ ++.+ ..++. ..+. +.+....+.. T Consensus 158 ~~~i~~~~~~~~~~l-----------------~~~~~---~~~~----~~~~~~~~~~---------------------- 191 (469) T protein:vir:10 158 QWTISKFNVAPDGGL-----------------ESIEQ---IAPP----ARTRGSLYVA---------------------- 191 (469) T ss_pred cccceeeeeccCCce-----------------eeeee---cCcc----cccccccccC---------------------- Confidence 3221110011 1111 00000 0000 0000000000 Q ss_pred cceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCCC---- Q lcl|Aclame:pro 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDDE---- 304 (508) Q Consensus 230 ~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~~---- 304 (508) ...+.+-|++.|+- ...+...++|+|.|.+..|....--=+..+..++.-+ +.|.|.... +++.. T Consensus 192 ---~~~~~~lp~~k~i~--~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vg-----ky~~~a~~~ 261 (469) T protein:vir:10 192 ---NIAPPEIPVNRLVV--YTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVG-----TASSATDED 261 (469) T ss_pred ---CCCccccccCcEEE--EEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEE-----ecCCCCCHH Confidence 00111112221111 0122345679999999988754333333333344333 356665443 12111 Q ss_pred CCccCC-------cccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 305 HKPTFD-------TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 305 ~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) .+..+. .+......+. .+..|+.++..-....|...++.+=++|+..+ ++....++.++|.....++- T Consensus 262 ek~~l~~a~~~~~~g~~a~~iip----~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~i-LG~tlTs~~~gGS~a~~~vh 336 (469) T protein:vir:10 262 EVRKMAALARSVRGGINAGVGLA----QGQILELLGVSGNLPDIRRAIEGHDRSIALSG-LAHFLNLDGKGGSYALASVL 336 (469) T ss_pred HHHHHHHHHHHHhcCCceEEEcc----CCceEEEeecCCCchHHHHHHHHHHHHHHHHH-hcccccccCccchhhHHHHH Confidence 010000 0011111111 12346666666555667777777767775544 44332232222221111111 Q ss_pred HHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVL 456 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~ 456 (508) +.-....+..-.+.+...|. +||+-++.+.- + . ...-+.+.|+. +-.+.+..++.+.+++ T Consensus 337 --~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~-------g-----~----~~~~P~~~~~~-~e~~~~~~a~~i~~l~ 397 (469) T protein:vir:10 337 --EDPFTQAVHAYATSICRIANQHIIEDLVDINF-------G-----V----DTPAPVLTFDP-IGSRQDLTAAAVKLLY 397 (469) T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----C----CCCccEEEecC-CCCcHHHHHHHHHHHH Confidence 11223344455566777785 68877665520 0 0 01124567765 3455566777888899 Q ss_pred hCCCCC----HHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCCCCcccccCCCCCCC Q lcl|Aclame:pro 457 AIGALS----KQTFLQRNYGMTDEQAAEELAKIQSEAP-TDTFEGGRSAILNGGDGE 508 (508) Q Consensus 457 ~~Gi~s----~et~l~~~~~~~deea~~e~~ri~~E~~-~~~~~~~~~~~~~~~~g~ 508 (508) ..|++. .+.++.+.+|+++.+-.+.+..-.+..+ +..+..+ ......+.++ T Consensus 398 ~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 453 (469) T protein:vir:10 398 DAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSAAP-ARTRSSGNAD 453 (469) T ss_pred hcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCccc-cccCCCCCcc Confidence 999843 3568888888865322222221111111 1111111 1111111111 No 237 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=86.57 E-value=0.045 Score=27.99 Aligned_cols=430 Identities=13% Similarity=0.144 Sum_probs=189.2 Q ss_pred CChHHHHHHHHHHHHHhhhh--hhhhHHhhc------cccc--------c-----------CCH---HHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGV--TGSLSKITD------DPRI--------S-----------IDP---DEYVRIQTDLDYY 50 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~--~~~~~~~~~------~~~i--------~-----------~~~---~~~~~i~~~~~~Y 50 (508) ...++.++.|++--....-. .....++.- +..| + +.+ ...+-|++++.++ T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma 81 (521) T protein:vir:81 2 FSRLKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLM 81 (521) T ss_pred cchhhhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHh Confidence 23333344444311111000 000111100 0000 0 000 1222333333332 Q ss_pred cCCCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCc---H----HHHHHHHHHHHhhhHHH Q lcl|Aclame:pro 51 SDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDN---N----EADKFLNDVLEDNDFKN 118 (508) Q Consensus 51 ~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~---~----~~~~~l~~~l~~n~f~~ 118 (508) . .+-....++..++=+. .+|+++.+++. + ...+..+.++.--+|.+ T Consensus 82 ~----------------------~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~ 139 (521) T protein:vir:81 82 N----------------------NHEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDR 139 (521) T ss_pred h----------------------ccchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccch Confidence 1 1122222333332221 23556665432 1 12344566666668999 Q ss_pred HHHHHHHHHhhcCCEEEEEEEeC----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEE-EEEEEEEe Q lcl|Aclame:pro 119 KFEEALEKGVALGGFAMRPYIDG----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYT-LLEFHQWQ 193 (508) Q Consensus 119 ~~~~~~~~a~~~G~~~~~~~~d~----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt-~lE~h~~~ 193 (508) +..+.......-|..+||..+|. |-..+..++|.++-++..... .+..+...+. ..|++.+. T Consensus 140 ~~~~~fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr~i~~vr~i~k-------------~~~~~~~v~~~~~e~f~Y~ 206 (521) T protein:vir:81 140 RGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIIT-------------EDTPEGKIYKATKEYFIYT 206 (521) T ss_pred hhhHHHhhhhhcceEEEEEEEcCCccccceeeeeeCCcceeeeeeecc-------------cccCccceecceeeeeeee Confidence 99999999999999999999873 445788899999887643211 1111111111 01221111 Q ss_pred CCc-eEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHH Q lcl|Aclame:pro 194 DNG-SYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLD 272 (508) Q Consensus 194 ~~g-~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid 272 (508) .+. +|......|.. ..+.++|-+.+ .+.-+|+ .+.....=+|-+.+|.--.. T Consensus 207 ~~~~~~~~~g~~~~~----~~~vkI~~dAI--------~y~hSGl---------------~d~~~~~i~syLhkAiKp~N 259 (521) T protein:vir:81 207 VGNSSYCAGGQVFSP----NSRVKIPRSAI--------TYAHSGL---------------MDCDDKYIIGYLHRAVKPAN 259 (521) T ss_pred cCCccccccceeecC----Ccceeechhhe--------eeeeccc---------------eeCCCCeeeecchhhhHhHH Confidence 100 11111111111 01111111111 0001121 01111112344444443333 Q ss_pred HHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CC Q lcl|Aclame:pro 273 DINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SD 322 (508) Q Consensus 273 ~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~ 322 (508) .|=-.-+.+ .+--|.-..|||- .- .+++ ||..++.. .+++.+..+. -+ T Consensus 260 QLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev--~ddrk~msMlEDyWLpRRe 337 (521) T protein:vir:81 260 QLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKL--KNQQANLSMTEDYWLQRRD 337 (521) T ss_pred hhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccc--cccccccchhhhhcccccC Confidence 333222222 2223455566663 11 1110 24433332 1222333221 12 Q ss_pred CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-c--cchHHHHHHHHHHHHhhHHHHHHHHHHHHH Q lcl|Aclame:pro 323 DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-G--VKTATEVVSNNSMTYQTRSSYLTMVEKAID 399 (508) Q Consensus 323 ~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~~~~~~l~~~~~~~~~~~~~al~ 399 (508) ++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+...++ + ..-++||.-..-....-+..++..|..-|. T Consensus 338 GgrgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~ 416 (521) T protein:vir:81 338 GKAITDVTTLPGASGM-SDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTRQSQFSEVLR 416 (521) T ss_pred CCcccceeecccCCCC-ChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHH Confidence 2333346666542222 23466777788888888888888754332 2 234566766665555666666777777777 Q ss_pred HHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhc Q lcl|Aclame:pro 400 ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRN 470 (508) Q Consensus 400 ~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~ 470 (508) ++++.=|.|-. .+.. -.+..... .|.++|. ....+=.+.++-+.+. +. ..+ ..|.+++.++. T Consensus 417 ~~L~~qLilKg---iit~----eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~I 487 (521) T protein:vir:81 417 DPLKYNLILKN---VITE----DDWDREIN--NIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDI 487 (521) T ss_pred HHHHHhhhhhc---CCCH----HHHHHHhh--cceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH Confidence 76665443311 1111 11111112 2445554 3333333333322211 11 112 45888888999 Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 471 YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 471 ~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) ...||+|.+++-++|++|....-...+..+.++= T Consensus 488 Lr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 488 LKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred hccCHHHHHHHHHHHHHHhhCCCCCCCcccccCC Confidence 9999999999999999998654333222111111 No 238 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=86.34 E-value=0.046 Score=27.90 Aligned_cols=380 Identities=12% Similarity=0.089 Sum_probs=154.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchH--- Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA--- 77 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~--- 77 (508) +-+ ++++|+ ..+++ .+...+++.... +.....+ ...+.. ...+..+ T Consensus 16 ~~~---~~~lf~--------~~~~~----~~~~~~~~~~~~----~~~~~~~------~~~vs~------~~al~~~~v~ 64 (424) T protein:vir:45 16 RVL---LDALFR--------SKSLE----NPSTPITGDAVD----TDGLFRA------DVYVSP------ETAMKLAAVY 64 (424) T ss_pred hHH---HHhhcc--------ccCCC----CCccccchhhhh----hhccccC------Cceech------HHhhccHHHH Confidence 222 222332 12222 222233321110 0001100 000100 0111111 Q ss_pred ---HHHHHHHHHhhhcCcceEeeCCcHH----HHHHHHHHHH--hh---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee Q lcl|Aclame:pro 78 ---KTAARRIASVVFNEKAEIHVKDNNE----ADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI 144 (508) Q Consensus 78 ---~~iv~~~A~ll~~e~~~i~~~~~~~----~~~~l~~~l~--~n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~ 144 (508) ..|++..|++ |+.+--.++.. .+.-+..+|. -| ....-.+.++..++-.|.+++.+-.+. |++ T Consensus 65 ~cv~~Ia~~iA~l----p~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~ 140 (424) T protein:vir:45 65 SCIYVLSSSLAQM----PLHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEV 140 (424) T ss_pred HHHHHHHHHHhhC----ceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE Confidence 3455555544 44442111110 0112233332 11 112234445667777899888776654 543 Q ss_pred -EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccc Q lcl|Aclame:pro 145 -KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLP 223 (508) Q Consensus 145 -~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~ 223 (508) .+.+++|+.+.+. .+++++ .|.. ...++... | + T Consensus 141 ~~L~~l~~~~v~i~-~~~~~~------------------~y~~-----~~~~~~~~-----~-----------------~ 174 (424) T protein:vir:45 141 ISLDCCMPWETTLM-NTGGRY------------------TYGL-----YNEYGAFA-----I-----------------S 174 (424) T ss_pred EEEEEecCceEEEE-EcCCeE------------------EEEE-----EecCceEE-----E-----------------C Confidence 5667777776542 222211 1110 00011100 0 0 Q ss_pred cccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhc Q lcl|Aclame:pro 224 VYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLR 300 (508) Q Consensus 224 ~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~ 300 (508) . .+ ..+++.+-.+ ...|+|.+.-+...|......-....+-|+. +++..++ |..+ T Consensus 175 ~-----~e----------Vih~r~~~~d-----~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-- 232 (424) T protein:vir:45 175 P-----DD----------MIHIRALGNN-----QKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGL-- 232 (424) T ss_pred c-----cc----------EEEecCcCCC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC-- Confidence 0 00 2334432222 3468898887777766554333333344554 4555444 2211 Q ss_pred CCCCCCccCCcc-cceEeeec--CC----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-ch Q lcl|Aclame:pro 301 FDDEHKPTFDTE-QNVYVGVL--SD----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KT 372 (508) Q Consensus 301 ~~~~~~~~~~~~-~~~~~~~~--~~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~T 372 (508) +++....+... ...|.+.. .+ -+++..++.++......++.+..+....+|....|++|..++...++. .+ T Consensus 233 -~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn 311 (424) T protein:vir:45 233 -NKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSN 311 (424) T ss_pred -CHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc Confidence 11111111000 01111110 00 012223454544433445677777778899999999999998765432 22 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 373 ATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEED 452 (508) Q Consensus 373 Atei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~ 452 (508) +++.... -...++.-..+.++..|..- ++.... ....+.+.|+.+.-+..|.++.++.. T Consensus 312 ~eq~~~~--f~~~tL~P~~~~ie~~ln~k------------Ll~~~e-------~~~g~~i~fd~~~llr~d~~~r~~~~ 370 (424) T protein:vir:45 312 ISAQAIQ--FVRYTMMPWVTNWEQELNRR------------LFTRAE-------LAAGYYVRFNLTGLLRGTPQERAQFY 370 (424) T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHh------------cCChhh-------hcCCcEEEeechhhhccCHHHHHHHH Confidence 2221111 11222333333333333221 111000 01124467777776778999999999 Q ss_pred HHHHhCCCCCHHHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 453 AKVLAIGALSKQTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 453 ~~~~~~Gi~s~et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .+++.+|+|+.-+++... |+++ +..++-+.-.....+.....+ ....++...| T Consensus 371 ~~~~~~g~~T~NE~R~~~-gl~pi~ggD~~~~~~n~~~~~~~~~~--~~~~~~~~~~ 424 (424) T protein:vir:45 371 HFAITDGWMSRNEARAFE-DMNPVEGLDEMLVSVNAANPAGDFKP--PKNDEGKTNE 424 (424) T ss_pred HHHHhCCCcCHHHHHHHh-CCCCCCCcceeeecccccccccccCC--CCCCCCCCCC Confidence 999999999999988653 4432 111111111110000000000 0111111111 No 239 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=85.76 E-value=0.05 Score=27.69 Aligned_cols=429 Identities=14% Similarity=0.130 Sum_probs=182.4 Q ss_pred CCh--HHHHHHHHHHHHHhhhh--hhhhHHhhc------cccccCCH-----------------------HHHHHHHHHH Q lcl|Aclame:pro 1 MGL--IQRIKDLFWKGAAATGV--TGSLSKITD------DPRISIDP-----------------------DEYVRIQTDL 47 (508) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~--~~~~~~~~~------~~~i~~~~-----------------------~~~~~i~~~~ 47 (508) |.+ +..+|-|-+.--..... ...+.+..- ...+.++. ...+-|++++ T Consensus 1 m~~~~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:72 1 MKFNVLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYR 80 (524) T ss_pred CCCchhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHH Confidence 655 33333332110000000 000000000 00010000 0111122222 Q ss_pred HHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhh Q lcl|Aclame:pro 48 DYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDND 115 (508) Q Consensus 48 ~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~ 115 (508) .++ ..+-....++..++=+. .+|+.+.+++-+ ...+..+.++.--+ T Consensus 81 ~ma----------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~ 138 (524) T protein:vir:72 81 NLM----------------------NNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLS 138 (524) T ss_pred HHh----------------------hccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhc Confidence 221 11222233333333221 235666654322 12344566676678 Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEE-EEE Q lcl|Aclame:pro 116 FKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTL-LEF 189 (508) Q Consensus 116 f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~-lE~ 189 (508) |.++..+.+.....-|..+||-++|. |-..+..++|.++-++.- +......+.+.++- .|+ T Consensus 139 F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~~~~vi~~~~e~ 205 (524) T protein:vir:72 139 FQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVRE-------------IITETEAGTKIVKGYKEY 205 (524) T ss_pred cchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCccceeeee-------------eccCCCccchhhcchhhh Confidence 99999999999999999999999985 345678888888755421 11111111111111 111 Q ss_pred EEEeCCceEEEEEEEEecCCcc--ccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhH Q lcl|Aclame:pro 190 HQWQDNGSYQITNELYKSDSPD--IVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNA 267 (508) Q Consensus 190 h~~~~~g~~~I~~~ly~~~~~~--~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~ 267 (508) +.+..+ +.-|.. ++. ..|+.|. +|. ..+++.. .+.+.... + .=+|-+.+| T Consensus 206 f~Y~~~------~~~y~~-~g~~~~~~~~ik---I~~-----dAI~y~h-----SGL~d~~~-~-------~i~gyLhkA 257 (524) T protein:vir:72 206 FIYDTA------HESYAC-DGRMYEAGTKIK---IPK-----AAVVYAH-----SGLVDCCG-K-------NIIGYLHRA 257 (524) T ss_pred eeeccC------cccccc-CccccCCCccee---cch-----hheeeee-----ccceeCCC-C-------ceeccchhh Confidence 111110 000100 000 0011110 000 0011100 00110000 0 012334444 Q ss_pred HHHHHHHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec---- Q lcl|Aclame:pro 268 KHVLDDINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL---- 320 (508) Q Consensus 268 ~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~---- 320 (508) .--...|=-.-+.+ .+--|.-..|||- .- .+++ +|..++.. .+++.+..+. T Consensus 258 iKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev--~ddrk~msMlEDyW 335 (524) T protein:vir:72 258 VKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKI--KNQQHNMSMTEDYW 335 (524) T ss_pred hHhHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee--ccchhhhhhHhhhc Confidence 33333332222222 2223455566663 11 1110 23433332 1222222221 Q ss_pred ---CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-c--cchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 321 ---SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-G--VKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 321 ---~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) -+++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..+++ + ..-++||.-..-....-+..++..| T Consensus 336 LpRReGgrgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rF 414 (524) T protein:vir:72 336 LQRRDGKAVTEVDTLPGADNT-GNMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKF 414 (524) T ss_pred ccccCCCcccceeeccccCCc-ChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHH Confidence 122333346666543222 23466777788888888888887744332 2 2346677666655556666677777 Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-HHH--hCC----CCCHHH Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-KVL--AIG----ALSKQT 465 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-~~~--~~G----i~s~et 465 (508) ..-|.++++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ .+. ..+ .+|.++ T Consensus 415 s~~f~~~Lk~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~y 485 (524) T protein:vir:72 415 EEVFLDPLKTNLLLKG---IIT----EDEWNDEIN--NIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRT 485 (524) T ss_pred HHHHHHHHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHH Confidence 7777777665443311 111 111111112 3445544 333333333332221 111 112 458888 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) +.++....||+|.+++-++|++|....-...+....++= T Consensus 486 i~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:72 486 AMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 889999999999999999999997543322221111111 No 240 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=85.58 E-value=0.052 Score=27.63 Aligned_cols=429 Identities=13% Similarity=0.132 Sum_probs=182.5 Q ss_pred CCh--HHHHHHHHHHHHHhhhh--hhhhHHhhc------cccccCCH-----------------------HHHHHHHHHH Q lcl|Aclame:pro 1 MGL--IQRIKDLFWKGAAATGV--TGSLSKITD------DPRISIDP-----------------------DEYVRIQTDL 47 (508) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~--~~~~~~~~~------~~~i~~~~-----------------------~~~~~i~~~~ 47 (508) |.+ +..+|-|-+.--..... ...+.+..- ...+.++. ...+-|++++ T Consensus 1 m~~~~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MKFNVLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYR 80 (524) T ss_pred CCCchhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHH Confidence 655 33333332110000000 000000000 00010000 0111122222 Q ss_pred HHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhh Q lcl|Aclame:pro 48 DYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDND 115 (508) Q Consensus 48 ~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~ 115 (508) .++ ..+-....++..++=+. .+|+.+.+++-+ ...+..+.++.--+ T Consensus 81 ~ma----------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~ 138 (524) T protein:vir:10 81 NLM----------------------NNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLS 138 (524) T ss_pred HHh----------------------hccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhc Confidence 221 11222233333333221 235666654322 12344566676678 Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEE-EEE Q lcl|Aclame:pro 116 FKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTL-LEF 189 (508) Q Consensus 116 f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~-lE~ 189 (508) |.++..+.+.....-|..+||-++|. |-..+..++|.++-++.- +......+.+.++- .|+ T Consensus 139 F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~~~~vi~~~~e~ 205 (524) T protein:vir:10 139 FQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVRE-------------IITETEAGTKIVKGYKEY 205 (524) T ss_pred cchhhhHHHhhheeeeEEEEEEEeeCCCccccceeeeeeCCccceeeee-------------eccCCCccchhhcchhhh Confidence 99999999999999999999999984 345678888888755421 11111111111111 111 Q ss_pred EEEeCCceEEEEEEEEecCCcc--ccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhH Q lcl|Aclame:pro 190 HQWQDNGSYQITNELYKSDSPD--IVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNA 267 (508) Q Consensus 190 h~~~~~g~~~I~~~ly~~~~~~--~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~ 267 (508) +.+..+ +.-|.. ++. ..|+.|. +|. ..+++.. .+.+.... + .=+|-+.+| T Consensus 206 f~Y~~~------~~~y~~-~g~~~~~~~~ik---I~~-----dAI~y~h-----SGL~d~~~-~-------~i~gyLhkA 257 (524) T protein:vir:10 206 FIYDTA------HESYAC-DGRMYEAGTKIK---IPK-----AAIVYAH-----SGLVDCCG-K-------NIIGYLHRA 257 (524) T ss_pred eeeccC------cccccc-CccccCCCccee---cch-----hheeeee-----ccceeCCC-C-------ceeccchhh Confidence 111110 000100 000 0011110 000 0011100 00110000 0 012334444 Q ss_pred HHHHHHHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec---- Q lcl|Aclame:pro 268 KHVLDDINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL---- 320 (508) Q Consensus 268 ~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~---- 320 (508) .--...|=-.-+.+ .+--|.-..|||- .- .+++ +|..++.. .+++.+..+. T Consensus 258 iKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev--~ddrk~msMlEDyW 335 (524) T protein:vir:10 258 VKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKI--KNQQHNMSMTEDYW 335 (524) T ss_pred hHHHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee--ccchhhhhhHhhhc Confidence 33333332222222 2223455566663 11 1110 23433332 1222222221 Q ss_pred ---CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccc-c--cchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 321 ---SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSND-G--VKTATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 321 ---~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~~~~~~l~~~~~~~~~~~ 394 (508) -+++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..+++ + ..-++||.-..-....-+..++..| T Consensus 336 LpRReGgrgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rF 414 (524) T protein:vir:10 336 LQRRDGKAVTEVDTLPGADNT-GNMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKF 414 (524) T ss_pred ccccCCCcccceeeccccCCc-ChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHH Confidence 122333346666543222 23466777788888888888887744332 2 2345677666655556666677777 Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-HHH--hCC----CCCHHH Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-KVL--AIG----ALSKQT 465 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-~~~--~~G----i~s~et 465 (508) ..-|.++++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ .+. ..+ .+|.++ T Consensus 415 s~~f~~~Lk~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~y 485 (524) T protein:vir:10 415 EEVFLDPLKTNLLLKG---IIT----EDEWNDEIN--NIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRT 485 (524) T ss_pred HHHHHHHHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHH Confidence 7777777665443311 111 111111112 3445544 333333333332221 111 112 458888 Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 466 ~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) +.++....||+|.+++-++|++|....-...+....++= T Consensus 486 i~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 486 AMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 889999999999999999999997543322221111111 No 241 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=85.34 E-value=0.054 Score=27.55 Aligned_cols=409 Identities=11% Similarity=0.073 Sum_probs=157.7 Q ss_pred CChH-HHHHHHHHHHHH---hhhhhhhh-HHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccc Q lcl|Aclame:pro 1 MGLI-QRIKDLFWKGAA---ATGVTGSL-SKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTIN 75 (508) Q Consensus 1 m~~~-~~ik~~~~~~~~---~~~~~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n 75 (508) |+-| +.-=+-|+.... +--....+ ..+.+|+-=-+++.++.+|.+-. =.|+...... -.... ..+ -.- T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a--~~gd~~~~~~-L~edm--~e~--D~~ 73 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEA--EQGNLQAQAE-LFMDM--EER--DAH 73 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHh--hCCCHHHHHH-HHHHH--Hhh--ChH Confidence 2110 000000000000 00000000 01112222233444444433321 1111100000 00000 000 011 Q ss_pred hHHHHHHHHHHhhhcCcceEeeCC-c----HHHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCCEEEEEEEeC--Cee--- Q lcl|Aclame:pro 76 MAKTAARRIASVVFNEKAEIHVKD-N----NEADKFLNDVLEDN-DFKNKFEEALEKGVALGGFAMRPYIDG--NHI--- 144 (508) Q Consensus 76 ~~~~iv~~~A~ll~~e~~~i~~~~-~----~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~~~~~d~--~~~--- 144 (508) +...+-. --.-|++-+..|.-.. + ...-+++++++.+. +|...+..++. |..+|-+++-..|+. |.. T Consensus 74 i~s~l~~-Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) T protein:vir:79 74 LFAEMSK-RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPL 151 (526) T ss_pred HHHHHHH-HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEE Confidence 2222222 2333445556665321 1 12334688888653 47766665555 888898888777653 221 Q ss_pred EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccc Q lcl|Aclame:pro 145 KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) Q Consensus 145 ~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~ 224 (508) ++.++++..|. ++ ..+...+. ++... .-|.+ T Consensus 152 ~l~~r~~~~F~---~~---------------------------------~~~~~~l~---~~~~~--~~g~~-------- 182 (526) T protein:vir:79 152 AFHHRPQSWFQ---LN---------------------------------PEDQNELR---LRDNS--PAGEA-------- 182 (526) T ss_pred EeeeecccceE---ec---------------------------------cCCCcEEE---ecCCC--CCcee-------- Confidence 12222322211 00 00000000 00000 00111 Q ss_pred ccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechHHhcCCC Q lcl|Aclame:pro 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDD 303 (508) Q Consensus 225 ~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~~~~~~ 303 (508) -|++.|+.. ..+...++|.|.+.+..|.-..--=...+..|+.=+ +.|.|..++ +++. T Consensus 183 --------------l~~~k~iv~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~ig-----ky~~ 241 (526) T protein:vir:79 183 --------------LQPFGWIIH--RPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG-----KYPP 241 (526) T ss_pred --------------ecCCceEEE--eecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEE-----ecCC Confidence 122222210 123344678899998877643322222333333333 357775555 2221 Q ss_pred C-C---CccCCcc-----cceEeeecCCCCCCCcceEeec-cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc-cch Q lcl|Aclame:pro 304 E-H---KPTFDTE-----QNVYVGVLSDDNNGLGVKDMTT-PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG-VKT 372 (508) Q Consensus 304 ~-~---~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~~T 372 (508) . . +..+... ..-...+.. +.-|+.++. ....+.|.+.++.+=++|+..+ ++...-++.++| ..| T Consensus 242 ~a~~~ek~~L~~av~~i~~da~~iiP~----~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtlTs~~~~g~~gS 316 (526) T protein:vir:79 242 GTADEEKATLLRAVTGLGHAAAGIIPE----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGA 316 (526) T ss_pred CCCHHHHHHHHHHHHHHhcCcEEEecC----CceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhhccccccCcchh Confidence 1 1 1100000 000111111 123555553 2334456666666666665443 443322222111 111 Q ss_pred -H-HHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHH Q lcl|Aclame:pro 373 -A-TEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) Q Consensus 373 -A-tei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~ 449 (508) | -++- +.-....+..-.+.+...|. +|++.++.+.- + ... ....-+.+.|+..-+.|..+.+ T Consensus 317 ~a~g~vh--~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~-------~-----~~~-~~~~~p~~~~~~~e~eDl~~~a 381 (526) T protein:vir:79 317 FALGQVH--NEVRHDILASDARQLAATLSRDLLWPLLVLNR-------P-----GSP-DVRRAPRLVFDLREQADITSMA 381 (526) T ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----CcC-CccccceEEeCCCCcccHHHHH Confidence 1 1111 11122334445566777774 68887776521 0 000 1112356778887888888888 Q ss_pred HHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCCCCCCcccccCCCCCC----C Q lcl|Aclame:pro 450 EEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEA-PTDTFEGGRSAILNGGDG----E 508 (508) Q Consensus 450 ~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~-~~~~~~~~~~~~~~~~~g----~ 508 (508) +.+.+++..|+--.+.++.+.+|+++.+..+.+..-.... +.....+..........+ + T Consensus 382 ~~~~~L~~~G~~i~~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) T protein:vir:79 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGD 445 (526) T ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCCchhhccccCCccccccccccccccccccccccCch Confidence 8999999999866667888888885532222221100000 000000100000111111 1 No 242 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=85.17 E-value=0.055 Score=27.50 Aligned_cols=419 Identities=10% Similarity=0.114 Sum_probs=177.4 Q ss_pred CChHHHHHHH--HHHHHHhhhhhhhhHHhhc-cccccCCHHH-HHHHHHHHHHhcCCCccccCccCCCcccccccc--cc Q lcl|Aclame:pro 1 MGLIQRIKDL--FWKGAAATGVTGSLSKITD-DPRISIDPDE-YVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKN--TI 74 (508) Q Consensus 1 m~~~~~ik~~--~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~-~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~--~~ 74 (508) |..|++...- ....+..|+... ..+..+ +.-|..+... ...--....+|.|.... ..-.-+.-+.+ +. T Consensus 4 ~~~w~~~de~~~~~~~~~~~~~~~-~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n-----~~eLI~~YR~ma~~~ 77 (533) T protein:vir:58 4 LEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFN-----RFFLYDMYDRMDYTD 77 (533) T ss_pred cchhhhhhHHHHHHHhhchhhccc-CccCCCCCccccCCCCcchhhhhhhhhhhcccccc-----HHHHHHHHHHhhccC Confidence 5555553332 222233332210 011111 1112211100 01111233455543210 00000000111 12 Q ss_pred chHHHHHHHHHHhh-----hcCcceEeeCCcH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC---Ce Q lcl|Aclame:pro 75 NMAKTAARRIASVV-----FNEKAEIHVKDNN---EADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG---NH 143 (508) Q Consensus 75 n~~~~iv~~~A~ll-----~~e~~~i~~~~~~---~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~---~~ 143 (508) +-....++..++-+ ...|+++..++-+ ...+.+..+ .+|.++..+.+......|..++|.-.++ |- T Consensus 78 pEVd~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~l---ldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI 154 (533) T protein:vir:58 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYV---INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) T ss_pred cchhhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHH---hcchhhhhHHHHhhhhcceeEEEeccCCcccch Confidence 33334444444333 2335566554422 223344444 4699999999999999999999986543 33 Q ss_pred eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccc Q lcl|Aclame:pro 144 IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLP 223 (508) Q Consensus 144 ~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~ 223 (508) ..+.+++|-++-++ ++- .++ .|++.... .+.+..+...+..+|-+.+ T Consensus 155 ~elr~lDPr~i~~v-r~~--~t~--------------------~eyyvy~~---------~~~~~~s~~~~~kI~~daI- 201 (533) T protein:vir:58 155 EKFQVVSPYIFSKR-YNP--ETD--------------------TWYYVITD---------VYRNVVSGYFNEDIPEEDV- 201 (533) T ss_pred hhheecCCeeeEEE-Eee--ccc--------------------eEEEeecc---------cccccccCccccccchhhe- Confidence 36788888887664 210 000 02221111 1111111111222221110 Q ss_pred cccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc---cceee-ech--- Q lcl|Aclame:pro 224 VYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG---QKHIA-VQP--- 296 (508) Q Consensus 224 ~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~---~~~i~-v~~--- 296 (508) .+..+|+ .+..++.++|-+..|.--...|=..-+.+ -.++.+ ..||| |.- T Consensus 202 -------~y~~SGl---------------~d~~~~~iisyLhkAiKp~NQLkmiEDAl-VIYRisRAPeRRvFYIDVGNl 258 (533) T protein:vir:58 202 -------IHFSHKI---------------DTNFFPYGRSYLESARAIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNV 258 (533) T ss_pred -------eeeeecc---------------ccCCCCceehhhhHHHHHHHHHHHHHHHH-HHHhhcCChhheEEEEeecCC Confidence 0001221 12235567787777755444444333332 223433 34555 311 Q ss_pred ------HHh-----------cCCCCCCccCCcccceEe---ee-------cCCCCCCCcceEeeccCCHHHHHHHHHHHH Q lcl|Aclame:pro 297 ------GML-----------RFDDEHKPTFDTEQNVYV---GV-------LSDDNNGLGVKDMTTPIRTVQYKDAIDHFI 349 (508) Q Consensus 297 ------~~~-----------~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~i~~~~~dir~e~~~~~l~~~l 349 (508) .++ -+|..++.+-+ ++.+. .+ .-++..+.-|+++... .. .-+..++-+. T Consensus 259 pk~KAeqYl~~im~k~kNklvYDa~TGev~d--drk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg-~l-gemeDV~YF~ 334 (533) T protein:vir:58 259 PPDKINEYLTNIAMQYKRDYWVRNNQNQFLG--IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KV-DLAEDVEYML 334 (533) T ss_pred CccCHHHHHHHHHHhcccceEEeccCCeEee--ccchhhhhhhHhhhcccccCCCccceeeecCCC-CC-CcHHHHHHHH Confidence 111 02333333211 11111 11 1122333447777654 33 4457788888 Q ss_pred HHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccC Q lcl|Aclame:pro 350 KEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQ 429 (508) Q Consensus 350 ~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~ 429 (508) +.++...+++.+-+..+++. .-++||.-..-.... ....+|..+.+++..-|.+ .+....+ T Consensus 335 kkLy~ALnVP~sRl~~e~~f-gr~~eItRDEiKF~K----FI~rLR~rF~~ll~~qLil--------------k~iit~e 395 (533) T protein:vir:58 335 NRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNN----TIKRIQGFFVEELERMVRM--------------NKEFADQ 395 (533) T ss_pred HHHHHHhCCCeeecCCCCCC-ccchhhhHHHHHHHH----HHHHHHHHHHHHHhccccc--------------ccCcchh Confidence 99999999988887766543 335555544433333 3333444445555433321 1111122 Q ss_pred cceEEEEeCCCccCCHHHHHHHHHH-H--HhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-cc-----c Q lcl|Aclame:pro 430 PLDIECHFDDGVFVNKDKQLEEDAK-V--LAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-RS-----A 500 (508) Q Consensus 430 ~~ei~i~f~d~i~~d~~~e~~~~~~-~--~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-~~-----~ 500 (508) +..+.+..+.....=.+.++-+.+. + ...+.+++..+.++....|||+ +++.+.|++|....-...+ .. . T Consensus 396 ew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei-~~q~e~ie~E~~~~~~~~~~~~~e~~~~ 474 (533) T protein:vir:58 396 DFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDL-KPQEEVAEAAGGGGLFDTGGFGEETTPA 474 (533) T ss_pred heeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhh-hHHHHHHHHhhcCCCCCCCCcccccCCc Confidence 2233344344344333333332211 1 1346788877777788898854 4444667777543211111 00 0 Q ss_pred cCCCCCCC Q lcl|Aclame:pro 501 ILNGGDGE 508 (508) Q Consensus 501 ~~~~~~g~ 508 (508) .+.+.-|+ T Consensus 475 ~~~~~~~~ 482 (533) T protein:vir:58 475 DFLGERGS 482 (533) T ss_pred ccCccccC Confidence 01111111 No 243 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=85.02 E-value=0.056 Score=27.45 Aligned_cols=389 Identities=13% Similarity=0.077 Sum_probs=148.5 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) =+++.|+|+.|...... ++....+ .+..|.. . .+..+... ......--... T Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~----------------~~~~~~~-~----~~~~v~~~----~~~~~~~V~~c 54 (409) T protein:vir:93 4 ENIVTRIKKKLIDNWID----QSTSKLY----------------DFSPWKN-R----SFWGVINN----TLETNETIFSA 54 (409) T ss_pred cchhhhhhhhhhhhhhc----ccccccc----------------ccccccC-c----cccccchh----hhhccHHHHHH Confidence 35666666654321100 0000000 0101110 0 00000000 00011111222 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Ce-eEEEEEcCCe Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWVRADQ 153 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~-~~i~~v~a~~ 153 (508) ++.+|+-+-.=|+.+--.+ +..+..+..+|.. | ....-...++...+..|.+++.+..+. |+ ..+..++|+. T Consensus 55 i~~Ia~~ia~lp~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 133 (409) T protein:vir:93 55 ITKLSNSMASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) T ss_pred HHHHHHhhhhCceeEeecc-ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCce Confidence 2333333322244442111 1112223333321 2 122334556677788898888777764 44 3566778887 Q ss_pred EEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 154 FYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) +-++..+++.. .+|. +. .. .| ..+. +|. .+ T Consensus 134 v~~~~~~~~~~-----------------~~y~-~~---~~-~g------------------~~~~---~~~-----~e-- 163 (409) T protein:vir:93 134 VEMLIENQSRE-----------------LYYS-IH---AA-TG------------------NKLI---VHN-----MD-- 163 (409) T ss_pred eEEEEeCCCcE-----------------EEEE-EE---cC-Cc------------------eEEE---Ecc-----cc-- Confidence 76543222211 0010 00 00 01 0000 000 00 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeeechHHhcCCCCCCccCCcc- Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKPTFDTE- 312 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~~~~~~~~~~~~~~~- 312 (508) ..+++.+.. .+...|+|.+.-+...|+-....-.........+...|+....-+ +++....+... T Consensus 164 --------Vih~r~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l--~~e~~~~~~~~~ 229 (409) T protein:vir:93 164 --------MLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNV--GKEKRQQVLEDF 229 (409) T ss_pred --------EEEeCCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCC--CHHHHHHHHHHH Confidence 223332211 123358888776666666444322211111111111222211111 11110000000 Q ss_pred cceEe---eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-chHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 313 QNVYV---GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSNNSMTYQTRS 388 (508) Q Consensus 313 ~~~~~---~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~ 388 (508) ...+. ++..- +++..++.++......++.+..+.....|....|++|..++...++. .++++..- T Consensus 230 ~~~~~~~g~~~vl-~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~---------- 298 (409) T protein:vir:93 230 KQYYEENGGILFQ-EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNR---------- 298 (409) T ss_pred HHHhhcCCCeeec-CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH---------- Confidence 00010 00000 12223454544444446677777778899999999999998654432 22222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) Q Consensus 389 ~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~ 468 (508) ..++.+|..++..|..-.+.. ++... .......+.|+++.-+..|..+.++.+.+++.+|+++.-+++. T Consensus 299 ---~f~~~~l~P~~~~ie~~l~~~-Ll~~~-------~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~ 367 (409) T protein:vir:93 299 ---FYLQHTLLPIVKQYEEEFNRK-LLTKT-------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIRE 367 (409) T ss_pred ---HHHHHHHHHHHHHHHHHHHhh-cCCcc-------cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 112223333333322111110 11100 0011234566666656678999999999999999999999887 Q ss_pred hcCCCCHH-HHHHHHHHHHHhccCCCCCCccccc----CCCCCC Q lcl|Aclame:pro 469 RNYGMTDE-QAAEELAKIQSEAPTDTFEGGRSAI----LNGGDG 507 (508) Q Consensus 469 ~~~~~~de-ea~~e~~ri~~E~~~~~~~~~~~~~----~~~~~g 507 (508) .. |+++- ..++-+-. ..-.+.+......... .+..+| T Consensus 368 ~~-g~~p~~ggD~~~~~-~n~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 368 WE-DLPPVEGGDKPLIS-GDLYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred Hh-CCCCCCCcCeeeec-ccccccccchhhcccccCCCCCcCCC Confidence 53 44331 11110000 0000111111111111 111122 No 244 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=84.03 E-value=0.064 Score=27.14 Aligned_cols=367 Identities=10% Similarity=0.068 Sum_probs=123.1 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) |+.-. ++.... ... ..|..+..+.. +. .........-...++.+|+-+-.=|+.+.- T Consensus 1 Mg~f~---~lf~~~-~~~--------~~~~~~~~~~~--v~---------~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~ 57 (395) T protein:vir:95 1 MSILE---KIFKTR-KDI--------TYMLDLDMIED--LS---------QQAYVKRLAIDSCIEFVARAVAQSHFKVLE 57 (395) T ss_pred Cchhh---hhhccC-ccc--------cccccchhccc--cc---------hhhhhhhHHHHHHHHHHHHhhccceeEecc Confidence 22211 111111 010 00111111110 00 000111112233334444333333443332 Q ss_pred CCcHHHHHHHHHHHHh--hhH--HHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEE Q lcl|Aclame:pro 98 KDNNEADKFLNDVLED--NDF--KNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSNTNDISEAAIASRT 173 (508) Q Consensus 98 ~~~~~~~~~l~~~l~~--n~f--~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~ 173 (508) .+.. .+..+..+|.. |.+ ...+.+.+...+.+|+.++....+++.+.. +++...-|. ..... T Consensus 58 ~~~~-~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~---------- 123 (395) T protein:vir:95 58 GNRI-QKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEY-ALYDD---------- 123 (395) T ss_pred CCcc-ccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeE-eecCc---------- Confidence 2111 11112222221 111 112222333334455555543333333100 111000110 00000 Q ss_pred EEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccc Q lcl|Aclame:pro 174 QRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI 253 (508) Q Consensus 174 ~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~ 253 (508) .+..+.+ . .|.+.. .| + ..++. .|.+..+ ... T Consensus 124 ---------~~~~~~~---~---~~~~~~-~~------------~----------~~evi-------h~~~~~~--~~~- 155 (395) T protein:vir:95 124 ---------IFKDVTV---K---DYTYQR-TF------------T----------MQEVI-------YLKYNNN--KVT- 155 (395) T ss_pred ---------ceeEEEE---c---Cceeee-ee------------c----------cccEE-------EEccCCC--Ccc- Confidence 0000000 0 000000 00 0 00000 0111111 111 Q ss_pred cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCCCCccCCcc-cceEeeecCCC------C Q lcl|Aclame:pro 254 NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSDD------N 324 (508) Q Consensus 254 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~ 324 (508) .+|.|.+..+..+++... ..+. ..+.+.-++ +...+ +++....+... ++.+.+...+. + T Consensus 156 ----~~G~spi~~~~~~~~~~~---~~~~---~~~~~~gii~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~ 223 (395) T protein:vir:95 156 ----HFVESLFEDYGKIFGRMI---GAQL---KNYQIRGILKSASSAY--DEKNIEKLQAFTNKLFNTFNKNQLAIAPLI 223 (395) T ss_pred ----cccchHHHHHHHHHHHHH---HHHH---hcCCCceEEEeCCCCC--CHHHHHHHHHHHHHHhccccccCcceEEcC Confidence 136666665555544322 2222 344444333 22111 11111111100 01111111100 1 Q ss_pred CCCcceEeec-----cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhHHHHHHHHHHHH Q lcl|Aclame:pro 325 NGLGVKDMTT-----PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTRSSYLTMVEKAI 398 (508) Q Consensus 325 ~~~~i~~~~~-----dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~~~~~~~~~~al 398 (508) ++..++.++. +....++.+..+...++|....|++|..++... .++++ ....++ .++.-+...++..| T Consensus 224 ~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~---sn~e~---~~~~~~~~~l~P~~~~ie~~l 297 (395) T protein:vir:95 224 EGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET---ADLEK---NTLVFEKFCLTPLLKKIQNEL 297 (395) T ss_pred CCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc---cCHHH---HHHHHHHHHHHHHHHHHHHHH Confidence 1112222221 122335677777888899999999999885221 12221 111111 12222223333332 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDE 476 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~de 476 (508) ..- ++.... ....+.|+++.-+..|.++.++....++.+|+|+.-+++... +-+++. T Consensus 298 ~~k------------L~~~~~---------~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g 356 (395) T protein:vir:95 298 NAK------------LITQSM---------YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNP 356 (395) T ss_pred HHh------------hcChhh---------hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 211 111000 001134666666677888888888889999999999988653 323222 Q ss_pred HHHHHH-----HHHH--HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 477 QAAEEL-----AKIQ--SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 477 ea~~e~-----~ri~--~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ++.+-+ ..++ ++......+....+++++.+|| T Consensus 357 ~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 357 ELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred CCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 111111 1111 1111112222334556666677 No 245 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=84.03 E-value=0.064 Score=27.14 Aligned_cols=367 Identities=10% Similarity=0.068 Sum_probs=123.1 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) |+.-. ++.... ... ..|..+..+.. +. .........-...++.+|+-+-.=|+.+.- T Consensus 1 Mg~f~---~lf~~~-~~~--------~~~~~~~~~~~--v~---------~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~ 57 (395) T protein:vir:10 1 MSILE---KIFKTR-KDI--------TYMLDLDMIED--LS---------QQAYVKRLAIDSCIEFVARAVAQSHFKVLE 57 (395) T ss_pred Cchhh---hhhccC-ccc--------cccccchhccc--cc---------hhhhhhhHHHHHHHHHHHHhhccceeEecc Confidence 22211 111111 010 00111111110 00 000111112233334444333333443332 Q ss_pred CCcHHHHHHHHHHHHh--hhH--HHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEE Q lcl|Aclame:pro 98 KDNNEADKFLNDVLED--NDF--KNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSNTNDISEAAIASRT 173 (508) Q Consensus 98 ~~~~~~~~~l~~~l~~--n~f--~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~ 173 (508) .+.. .+..+..+|.. |.+ ...+.+.+...+.+|+.++....+++.+.. +++...-|. ..... T Consensus 58 ~~~~-~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~---------- 123 (395) T protein:vir:10 58 GNRI-QKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEY-ALYDD---------- 123 (395) T ss_pred CCcc-ccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeE-eecCc---------- Confidence 2111 11112222221 111 112222333334455555543333333100 111000110 00000 Q ss_pred EEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccc Q lcl|Aclame:pro 174 QRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI 253 (508) Q Consensus 174 ~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~ 253 (508) .+..+.+ . .|.+.. .| + ..++. .|.+..+ ... T Consensus 124 ---------~~~~~~~---~---~~~~~~-~~------------~----------~~evi-------h~~~~~~--~~~- 155 (395) T protein:vir:10 124 ---------IFKDVTV---K---DYTYQR-TF------------T----------MQEVI-------YLKYNNN--KVT- 155 (395) T ss_pred ---------ceeEEEE---c---Cceeee-ee------------c----------cccEE-------EEccCCC--Ccc- Confidence 0000000 0 000000 00 0 00000 0111111 111 Q ss_pred cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCCCCccCCcc-cceEeeecCCC------C Q lcl|Aclame:pro 254 NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSDD------N 324 (508) Q Consensus 254 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~ 324 (508) .+|.|.+..+..+++... ..+. ..+.+.-++ +...+ +++....+... ++.+.+...+. + T Consensus 156 ----~~G~spi~~~~~~~~~~~---~~~~---~~~~~~gii~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~ 223 (395) T protein:vir:10 156 ----HFVESLFEDYGKIFGRMI---GAQL---KNYQIRGILKSASSAY--DEKNIEKLQAFTNKLFNTFNKNQLAIAPLI 223 (395) T ss_pred ----cccchHHHHHHHHHHHHH---HHHH---hcCCCceEEEeCCCCC--CHHHHHHHHHHHHHHhccccccCcceEEcC Confidence 136666665555544322 2222 344444333 22111 11111111100 01111111100 1 Q ss_pred CCCcceEeec-----cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhHHHHHHHHHHHH Q lcl|Aclame:pro 325 NGLGVKDMTT-----PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTRSSYLTMVEKAI 398 (508) Q Consensus 325 ~~~~i~~~~~-----dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~~~~~~~~~~al 398 (508) ++..++.++. +....++.+..+...++|....|++|..++... .++++ ....++ .++.-+...++..| T Consensus 224 ~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~---sn~e~---~~~~~~~~~l~P~~~~ie~~l 297 (395) T protein:vir:10 224 EGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET---ADLEK---NTLVFEKFCLTPLLKKIQNEL 297 (395) T ss_pred CCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc---cCHHH---HHHHHHHHHHHHHHHHHHHHH Confidence 1112222221 122335677777888899999999999885221 12221 111111 12222223333332 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDE 476 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~de 476 (508) ..- ++.... ....+.|+++.-+..|.++.++....++.+|+|+.-+++... +-+++. T Consensus 298 ~~k------------L~~~~~---------~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g 356 (395) T protein:vir:10 298 NAK------------LITQSM---------YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNP 356 (395) T ss_pred HHh------------hcChhh---------hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 211 111000 001134666666677888888888889999999999988653 323222 Q ss_pred HHHHHH-----HHHH--HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 477 QAAEEL-----AKIQ--SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 477 ea~~e~-----~ri~--~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ++.+-+ ..++ ++......+....+++++.+|| T Consensus 357 ~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 357 ELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred CCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 111111 1111 1111112222334556666677 No 246 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=84.03 E-value=0.064 Score=27.14 Aligned_cols=367 Identities=10% Similarity=0.068 Sum_probs=123.1 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEee Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHV 97 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~ 97 (508) |+.-. ++.... ... ..|..+..+.. +. .........-...++.+|+-+-.=|+.+.- T Consensus 1 Mg~f~---~lf~~~-~~~--------~~~~~~~~~~~--v~---------~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~ 57 (395) T protein:vir:10 1 MSILE---KIFKTR-KDI--------TYMLDLDMIED--LS---------QQAYVKRLAIDSCIEFVARAVAQSHFKVLE 57 (395) T ss_pred Cchhh---hhhccC-ccc--------cccccchhccc--cc---------hhhhhhhHHHHHHHHHHHHhhccceeEecc Confidence 22211 111111 010 00111111110 00 000111112233334444333333443332 Q ss_pred CCcHHHHHHHHHHHHh--hhH--HHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEE Q lcl|Aclame:pro 98 KDNNEADKFLNDVLED--NDF--KNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSNTNDISEAAIASRT 173 (508) Q Consensus 98 ~~~~~~~~~l~~~l~~--n~f--~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~ 173 (508) .+.. .+..+..+|.. |.+ ...+.+.+...+.+|+.++....+++.+.. +++...-|. ..... T Consensus 58 ~~~~-~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~---------- 123 (395) T protein:vir:10 58 GNRI-QKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEY-ALYDD---------- 123 (395) T ss_pred CCcc-ccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeE-eecCc---------- Confidence 2111 11112222221 111 112222333334455555543333333100 111000110 00000 Q ss_pred EEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccc Q lcl|Aclame:pro 174 QRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI 253 (508) Q Consensus 174 ~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~ 253 (508) .+..+.+ . .|.+.. .| + ..++. .|.+..+ ... T Consensus 124 ---------~~~~~~~---~---~~~~~~-~~------------~----------~~evi-------h~~~~~~--~~~- 155 (395) T protein:vir:10 124 ---------IFKDVTV---K---DYTYQR-TF------------T----------MQEVI-------YLKYNNN--KVT- 155 (395) T ss_pred ---------ceeEEEE---c---Cceeee-ee------------c----------cccEE-------EEccCCC--Ccc- Confidence 0000000 0 000000 00 0 00000 0111111 111 Q ss_pred cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCCCCccCCcc-cceEeeecCCC------C Q lcl|Aclame:pro 254 NIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSDD------N 324 (508) Q Consensus 254 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~ 324 (508) .+|.|.+..+..+++... ..+. ..+.+.-++ +...+ +++....+... ++.+.+...+. + T Consensus 156 ----~~G~spi~~~~~~~~~~~---~~~~---~~~~~~gii~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~ 223 (395) T protein:vir:10 156 ----HFVESLFEDYGKIFGRMI---GAQL---KNYQIRGILKSASSAY--DEKNIEKLQAFTNKLFNTFNKNQLAIAPLI 223 (395) T ss_pred ----cccchHHHHHHHHHHHHH---HHHH---hcCCCceEEEeCCCCC--CHHHHHHHHHHHHHHhccccccCcceEEcC Confidence 136666665555544322 2222 344444333 22111 11111111100 01111111100 1 Q ss_pred CCCcceEeec-----cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHH-hhHHHHHHHHHHHH Q lcl|Aclame:pro 325 NGLGVKDMTT-----PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY-QTRSSYLTMVEKAI 398 (508) Q Consensus 325 ~~~~i~~~~~-----dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~-~~~~~~~~~~~~al 398 (508) ++..++.++. +....++.+..+...++|....|++|..++... .++++ ....++ .++.-+...++..| T Consensus 224 ~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~---sn~e~---~~~~~~~~~l~P~~~~ie~~l 297 (395) T protein:vir:10 224 EGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET---ADLEK---NTLVFEKFCLTPLLKKIQNEL 297 (395) T ss_pred CCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc---cCHHH---HHHHHHHHHHHHHHHHHHHHH Confidence 1112222221 122335677777888899999999999885221 12221 111111 12222223333332 Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCCHH Q lcl|Aclame:pro 399 DELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDE 476 (508) Q Consensus 399 ~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~--~~~~de 476 (508) ..- ++.... ....+.|+++.-+..|.++.++....++.+|+|+.-+++... +-+++. T Consensus 298 ~~k------------L~~~~~---------~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g 356 (395) T protein:vir:10 298 NAK------------LITQSM---------YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNP 356 (395) T ss_pred HHh------------hcChhh---------hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 211 111000 001134666666677888888888889999999999988653 323222 Q ss_pred HHHHHH-----HHHH--HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 477 QAAEEL-----AKIQ--SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 477 ea~~e~-----~ri~--~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ++.+-+ ..++ ++......+....+++++.+|| T Consensus 357 ~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 357 ELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred CCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 111111 1111 1111112222334556666677 No 247 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=82.84 E-value=0.073 Score=26.80 Aligned_cols=420 Identities=12% Similarity=0.100 Sum_probs=180.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) -++..---. .-...++++ .+ .+..+. ...+-|++++.++. +|.+. .. T Consensus 45 ~~~~~~~~~-~~~~~q~~y--------~~-~e~~~~-~~~eLI~~YR~ma~--~pEvd--------------------~A 91 (523) T protein:vir:68 45 VSENEAQQT-YNAMFQRMF--------GS-QEPGLK-STRELIDTYRNLMT--NYEVD--------------------NA 91 (523) T ss_pred ccccccccc-cchhhhhhh--------hc-cccccc-hHHHHHHHHHHHhh--ccchh--------------------hH Confidence 111110000 000011111 00 111111 23455777777752 22111 01 Q ss_pred HHHHHHhh-----hcCcceEeeCCc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC-----Ce Q lcl|Aclame:pro 81 ARRIASVV-----FNEKAEIHVKDN-------NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-----NH 143 (508) Q Consensus 81 v~~~A~ll-----~~e~~~i~~~~~-------~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~ 143 (508) ++..++=+ ..+|+.+.+++- +...+..+.++.--+|.++..+.+.....-|..+||-++|. |- T Consensus 92 v~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI 171 (523) T protein:vir:68 92 VSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGI 171 (523) T ss_pred HHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEeeCCCccccc Confidence 11111111 123455554331 12234456677667899999999999999999999999984 34 Q ss_pred eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEE-EEEEEEeCCceEEEEEEEEecCCccccCcccccccc Q lcl|Aclame:pro 144 IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTL-LEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTL 222 (508) Q Consensus 144 ~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~-lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~ 222 (508) ..+..++|.++-++.- .......+.+.++- .|++.+...+. .+ .|.+. ....|+.|. + T Consensus 172 ~Elr~lDPr~i~~vr~-------------i~~~~~~g~~vi~~~~e~f~Y~~~~~---~~-~~~g~-~~~~~~~ik---I 230 (523) T protein:vir:68 172 KELRRLDPRQVQYVRE-------------VITTTEAGVKIVKGYKEYFIYDTSHE---SY-ACDGR-IYEAGTKIK---I 230 (523) T ss_pred eeeeeeCCcceeEEEe-------------ecCCCCcchhhhhhhhhheeeccccc---cc-ccccc-ccCCCccee---c Confidence 5688888888765521 11111111111110 11111111000 00 00000 000011110 0 Q ss_pred ccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch--- Q lcl|Aclame:pro 223 PVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP--- 296 (508) Q Consensus 223 ~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~--- 296 (508) |. ..+++.. .+.+.... + .=+|-+.+|.--...|=-.-+.+ .+--|.-..|||- .- T Consensus 231 ~~-----dAI~y~h-----SGL~d~~~-~-------~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnl 292 (523) T protein:vir:68 231 PK-----AAIVYAH-----SGLVDCCG-K-------NIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNM 292 (523) T ss_pred ch-----hheeeee-----ccceeCCC-C-------ceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCC Confidence 00 0011100 00110000 0 01233444433333332222222 2223455566663 11 Q ss_pred ------HHh-----------cCCCCCCccCCcccceEeeec-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 ------GML-----------RFDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEF 352 (508) Q Consensus 297 ------~~~-----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i 352 (508) .++ -||..++.. .+++.+..+. -+++.+.-|+++..--.. .-+..++-+.+.+ T Consensus 293 Pk~KAeqYl~~im~k~kNKlvYDa~TGev--~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnl-gem~DV~YF~kkL 369 (523) T protein:vir:68 293 PSRKAAEHMQHVMNTMKNRIAYDATTGKI--KNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNT-GNMEDVRWFRNAL 369 (523) T ss_pred CchhHHHHHHHHHHhhcceeEEeccCCee--ccchhhhhhHhhhcccccCCCcccceeeccccCCc-ChHHHHHHHHHHH Confidence 111 123333332 1122222221 122233346666543222 2346677778888 Q ss_pred HHHhCCCchhccccccc--cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCc Q lcl|Aclame:pro 353 EVQIGLSTGTFSYSNDG--VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQP 430 (508) Q Consensus 353 ~~~~g~s~~~~~~~~~~--~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (508) +...+.+.+-+..++++ ..-++||.-..-....-+..++..|..-|.++++.=|.|-. .+. .-.+..... T Consensus 370 y~aLnVP~sRl~~~~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKg---iit----~eew~~i~~- 441 (523) T protein:vir:68 370 YMALRIPITRIPSDQGGIQFDAGTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKG---IIT----EDEWNDEIN- 441 (523) T ss_pred HHHhCCcceeecCCCcceecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCC----HHHHHHHhh- Confidence 88888887777444322 22355666665555556666666677767676665443311 111 111111112 Q ss_pred ceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCccccc Q lcl|Aclame:pro 431 LDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAI 501 (508) Q Consensus 431 ~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~ 501 (508) .|.++|. ....+=.+.++-+.+. +. ..+ .+|.+++.++....||+|.+++-++|++|....-...+.... T Consensus 442 -~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~e~ 520 (523) T protein:vir:68 442 -NIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPDQEQ 520 (523) T ss_pred -cceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhh Confidence 2444444 3333333333322211 11 112 458888889999999999999999999997543322221111 Q ss_pred CCC Q lcl|Aclame:pro 502 LNG 504 (508) Q Consensus 502 ~~~ 504 (508) ++= T Consensus 521 ~~f 523 (523) T protein:vir:68 521 EDF 523 (523) T ss_pred hcC Confidence 111 No 248 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=82.30 E-value=0.078 Score=26.66 Aligned_cols=409 Identities=11% Similarity=0.125 Sum_probs=185.3 Q ss_pred hHHhhccccccCCHHHHHHHHHHHHHhcCCCccc-cCccCCC--------------------------cc-cc------c Q lcl|Aclame:pro 24 LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYI-HYQASDG--------------------------IK-KK------R 69 (508) Q Consensus 24 ~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~--------------------------~~-~~------~ 69 (508) ++ ++...+... ..+--.+...-+ .....+| .. .+ | T Consensus 1 ~~-------~w~~~de~~----~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR 69 (511) T protein:vir:56 1 MK-------FWTKEEEQD----IQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYR 69 (511) T ss_pred CC-------Cccchhhhh----hhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHH Confidence 11 222211110 011111111100 0000011 00 00 0 Q ss_pred cccccchHHHHHHHHHHhhh-----cCcceEeeCCcH---H----HHHHHHHHHHhhhHHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 70 LKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN---E----ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 70 ~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~---~----~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~~~ 137 (508) .....+-....++..++=+. .+|+++.+++.+ . ..+..+.++.--+|.++..+.+.....-|..+||- T Consensus 70 ~ma~~pEvd~Av~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHk 149 (511) T protein:vir:56 70 ALAEYHEVDDAIQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHK 149 (511) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEE Confidence 00011112222333322221 235666664422 1 23345566666689999999999999999999999 Q ss_pred EEeC--CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccc--- Q lcl|Aclame:pro 138 YIDG--NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDI--- 212 (508) Q Consensus 138 ~~d~--~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~--- 212 (508) .+|+ |-..+.+++|.++-++.-- ......+...+ +++.++.+|...+... T Consensus 150 iid~k~GI~eLr~lDPr~i~~vr~i-------------~~~~~~~~~v~------------~~~~ey~~Y~~~~~~~~~~ 204 (511) T protein:vir:56 150 ILDKDNNIIELRPLNPMKMELVREI-------------QKETIDGVEVV------------KGTLEYYVYKQSDYKMPSW 204 (511) T ss_pred EeccccceeehhhcCcccchhhhhh-------------hcccccccccc------------cceeeeeEecCCCcccCcc Confidence 9985 4456778888887665210 00000010010 1112233332111000 Q ss_pred --------cCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHH--H Q lcl|Aclame:pro 213 --------VGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQF--I 282 (508) Q Consensus 213 --------lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~--~ 282 (508) -+.++|-+ .+++. .++.+-.+ ...++.+|-+.+|.--...|=-.-+.+ . T Consensus 205 ~~~~~~~~~~vkI~~d----------aI~y~-----hSGL~d~~------~~~g~i~syLhkAiKp~NQLkm~EDAlVIY 263 (511) T protein:vir:56 205 MSATNRAQTSFRIPKD----------AIVFA-----HSGLMRGC------ADDPYIIGYLDRAIKPANQLKMLEDALVIY 263 (511) T ss_pred cccccccccceeechh----------heeee-----cccceecc------CCCCeeeccchhhhHHHHhhHHHHhhHHHH Confidence 01111100 11110 01111000 123345666666655555544333333 2 Q ss_pred HHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeeec-------CCCCCCCcceEeec Q lcl|Aclame:pro 283 WEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGVL-------SDDNNGLGVKDMTT 334 (508) Q Consensus 283 ~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~ 334 (508) +--|.-..|||- .- .+++ +|..++..- +++.+..+. -+++.+.-|+++.. T Consensus 264 RitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~--ddrk~msMlEDyWLpRReGgrgTEItTLpG 341 (511) T protein:vir:56 264 RLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVK--NTTNAMSMLEDYYLPRREGSKGTEVSTLPG 341 (511) T ss_pred hhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceec--cchhhhhhHhhhcccccCCCCccceeeccc Confidence 223555666663 11 1111 244333221 122222221 12223334666554 Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCchhccccc--cc--cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 335 PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN--DG--VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELAN 410 (508) Q Consensus 335 dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~--~~--~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~ 410 (508) --.. .-+..++-+.+.++...+.+.+-+..++ ++ ..-++||.-..-....-+..++..|..-|.++++.=|.|-. T Consensus 342 gqnl-gem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKg 420 (511) T protein:vir:56 342 GQSL-GDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVNN 420 (511) T ss_pred cCCc-ChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Confidence 3222 2346677778888888888887776442 12 12356776666555566666777777777777665443311 Q ss_pred hhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CCCHHHHHHhcCCCCHHHHHHH Q lcl|Aclame:pro 411 AGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----ALSKQTFLQRNYGMTDEQAAEE 481 (508) Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~s~et~l~~~~~~~deea~~e 481 (508) .+. .-.+..... .|.++|. ....+=.+.++-+.+. +. ..+ ..|.+++.++....||+|.+++ T Consensus 421 ---iit----~eeW~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~ 491 (511) T protein:vir:56 421 ---IIT----EEEWDANHE--KLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAM 491 (511) T ss_pred ---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHH Confidence 111 111111112 3445544 3333333333322211 11 123 4589998899999999999999 Q ss_pred HHHHHHhccCCCCCCcccccC Q lcl|Aclame:pro 482 LAKIQSEAPTDTFEGGRSAIL 502 (508) Q Consensus 482 ~~ri~~E~~~~~~~~~~~~~~ 502 (508) -++|++|..+.-...+..+ + T Consensus 492 ~k~I~~E~k~~~~~~~e~~-f 511 (511) T protein:vir:56 492 QSEIDEEETNPRFQQDDQG-F 511 (511) T ss_pred HHHHHHhhcCCCCCCcccC-C Confidence 9999999876554444333 2 No 249 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=77.69 E-value=0.12 Score=25.59 Aligned_cols=334 Identities=15% Similarity=0.140 Sum_probs=113.7 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCcccccccccc-chHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI-NMAKT 79 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~-n~~~~ 79 (508) ||+|.+++.+ ++.... ......+.-. .. .+ .| +.+ .+ .--.. T Consensus 1 Mg~f~~~~~f-~~~~~~----~~~~~~~~~~----~~----~~-----~~--~~~-----------------~v~~~i~~ 43 (378) T protein:vir:93 1 MNLFGKVVSF-SRGKLN----NDTQRVTAWQ----NE----AV-----EY--TSA-----------------FVTNIHNK 43 (378) T ss_pred Cccchhhhhh-hccccC----CCcceeeecc----cc----hh-----HH--HHH-----------------HHHHHHHH Confidence 9999999984 222111 1111111000 00 00 00 000 00 00122 Q ss_pred HHHHHHHhhhcCcceEe-eCCc----H----HHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeE Q lcl|Aclame:pro 80 AARRIASVVFNEKAEIH-VKDN----N----EADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIK 145 (508) Q Consensus 80 iv~~~A~ll~~e~~~i~-~~~~----~----~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~ 145 (508) |++..|++ |+.+- -..+ + ..+.-|..+|.. | ....-....+...+..|.+++.+..++..- T Consensus 44 Ia~~iA~l----p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g- 118 (378) T protein:vir:93 44 IANEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTG- 118 (378) T ss_pred HHhhhhhC----ceeeEEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCc- Confidence 34444432 22220 0000 0 001123333321 1 112223334556677788886655543211 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) ..+.+...++. ..|..-| T Consensus 119 -------~~~~l~~~~~~------------------~~~~~~d------------------------------------- 136 (378) T protein:vir:93 119 -------ELLDLLFADDK------------------KEYKTEE------------------------------------- 136 (378) T ss_pred -------eEEEEEecCCe------------------eEeccce------------------------------------- Confidence 11111111110 0000000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chH------ Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPG------ 297 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~------ 297 (508) ..+++.|.. ..-|.|.++. +.++++. .+..+.++-++ |.. T Consensus 137 ----------------iih~r~~~~------~~~~~s~l~~---~~~~i~~-------~~~~~~~~g~l~~~~~l~~~~~ 184 (378) T protein:vir:93 137 ----------------LVRLTSPFY------INEDTSILDN---ALASIQT-------KLEQGKLRGLLKINAFLDIDNT 184 (378) T ss_pred ----------------eEEecCccc------cchhhHHHHH---HHHHHHH-------HHhcCcccceeeeCCcCCHHHH Confidence 011111100 0002222111 1111111 11222222111 000 Q ss_pred -------------HhcCCCCCCccCCcccceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcc Q lcl|Aclame:pro 298 -------------MLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) Q Consensus 298 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 364 (508) ....+..++..+ . +++..++.++.+....+ +..++...++|....|++|..+. T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------l--~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~ 250 (378) T protein:vir:93 185 QEYREKALTTIKNMQEGSSYNGLTP-----------V--DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL 250 (378) T ss_pred HHHHHHHHHHHHHhhcccccccceE-----------c--CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc Confidence 000000001100 0 11122444443332222 35556667789999999998763 Q ss_pred ccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCC Q lcl|Aclame:pro 365 YSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN 444 (508) Q Consensus 365 ~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d 444 (508) + |++|... ......++.-..+.++.+|..-+ +...... .+........+.|+++.-...| T Consensus 251 ----g--~~~e~~~-~~f~~~tl~P~~~~ie~~l~~kL-----------l~~~er~--~~~~~~~~~~~~fd~~~l~~~d 310 (378) T protein:vir:93 251 ----G--TATQEQQ-IYFYNSTIIPLLIQLEKELTYKL-----------ISTNRRR--VVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred ----C--CcHHHHH-HHHHHHHHHHHHHHHHHHHHhhc-----------CChhHhh--hhhhcccccceeeccchhhhcC Confidence 1 2222111 11111222333333333333211 0000000 0000011234667777778889 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCCHH-HHHH-----HHHHHHHhccCCCCCCcccccCCC--CCCC Q lcl|Aclame:pro 445 KDKQLEEDAKVLAIGALSKQTFLQRNYGMTDE-QAAE-----ELAKIQSEAPTDTFEGGRSAILNG--GDGE 508 (508) Q Consensus 445 ~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~de-ea~~-----e~~ri~~E~~~~~~~~~~~~~~~~--~~g~ 508 (508) .++.++.+.+++.+|+|+.-+++... |+.+- ..++ .+..+ +.+. ..+....+...+ .+++ T Consensus 311 ~~~~~~~~~~~~~~G~~t~NE~R~~~-gl~p~~ggD~~~~~~n~~~~--~~~~-~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 311 LKELIDLYHENINGPIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAV--KNLS-DLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCeeeeccccccc--cchh-hhcCccCCCCCCCCCCCC Confidence 99999999999999999999988753 33221 1110 00000 0000 001111111111 1111 No 250 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=76.38 E-value=0.14 Score=25.33 Aligned_cols=386 Identities=10% Similarity=0.000 Sum_probs=156.4 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHH-HhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEe Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLD-YYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIH 96 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~ 96 (508) ||......+..... ..+. ..|.. +..+... .....+.... -+.+.--...++.+|+-+-.=|+.+. T Consensus 1 ~~~~r~~~~~~~~~--~~~~------~~~~~~~~g~~~s-~~~~~vt~~~----al~~~~v~~~v~~ia~~iA~lp~~~~ 67 (419) T protein:vir:14 1 MFFSRQLLSNLGQT--QMSA------GGWVSALLGSSRS-DSGQVVTPAS----ALALTVLQNCVTLLAESIAQLPIELY 67 (419) T ss_pred Cccccccccccccc--ccCc------chhhHHhhcCCCc-cCCcccchHH----hhccHHHHHHHHHHHHhhccCceEEE Confidence 22222112222111 1111 12322 3322221 1111111110 01111122334444444333355443 Q ss_pred eCCcH-H---HHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCCeE Q lcl|Aclame:pro 97 VKDNN-E---ADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDG-NHI-KIAWVRADQFYPLQSNTNDIS 165 (508) Q Consensus 97 ~~~~~-~---~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~~ 165 (508) -.+++ . .+..|..+|.. | ....-.+..+...+..|.+++.+..+. |++ .+-.++|+.+-+. .+.+.. T Consensus 68 ~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~-~~~~~~- 145 (419) T protein:vir:14 68 ERSGEDRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVM-RGSDLK- 145 (419) T ss_pred EecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEE-ECCCce- Confidence 21111 0 11123344431 1 222334445777788898888777764 554 4666777776653 221100 Q ss_pred EEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEe Q lcl|Aclame:pro 166 EAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYF 245 (508) Q Consensus 166 ~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~ 245 (508) .+| ++. ..+ .++ . . -+.++ T Consensus 146 ----------------~~y--------------~~~-----~~~------~~~-----~-----~----------~i~h~ 164 (419) T protein:vir:14 146 ----------------PVY--------------RVR-----GSD------PMP-----Q-----R----------LVHHV 164 (419) T ss_pred ----------------EEE--------------EEc-----cCc------ccc-----h-----h----------heeEe Confidence 011 000 000 000 0 0 01223 Q ss_pred cCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-ccceeee--chHHhc-CCCCCCccCCcc-cceEeeec Q lcl|Aclame:pro 246 KTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAV--QPGMLR-FDDEHKPTFDTE-QNVYVGVL 320 (508) Q Consensus 246 ~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 320 (508) +.+-. +...|+|.+.-+...|+.....-....+-|+. +++..++ |..+-. .+++....+... .+.|.+.. T Consensus 165 ~~~~~-----dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 239 (419) T protein:vir:14 165 RWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSG 239 (419) T ss_pred cCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcc Confidence 32211 23468999888887776655554444445565 4555444 221100 001000001000 00111100 Q ss_pred C-C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccc-hHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 321 S-D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVK-TATEVVSNNSMTYQTRSSYLTMV 394 (508) Q Consensus 321 ~-~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~-TAtei~~~~~~l~~~~~~~~~~~ 394 (508) . + -+++..++.++......+..+..+.....|....|++|..++...++.. ++++.. . ..+ T Consensus 240 nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~---~----------~f~ 306 (419) T protein:vir:14 240 NAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS---L----------QFV 306 (419) T ss_pred ccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHH---H----------HHH Confidence 0 0 0122234444443333345666666778999999999999986544322 222111 1 123 Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCC Q lcl|Aclame:pro 395 EKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMT 474 (508) Q Consensus 395 ~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~ 474 (508) +..|..++..|-...+.. ++... ....+.+.|++++-+..|..+.++...+++..|+|+.-+++... |+. T Consensus 307 ~~~L~P~~~~ie~~l~~k-ll~~~--------~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~-gl~ 376 (419) T protein:vir:14 307 IYTLLPWVKRHEQAKTRD-LLLPS--------ERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE-NMP 376 (419) T ss_pred HHHHHHHHHHHHHHHhhh-ccCcc--------ccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CCC Confidence 333333333332211110 11100 01134577777776678999999999999999999999988753 332 Q ss_pred H-HHHHHHHHHHH---HhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 475 D-EQAAEELAKIQ---SEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 475 d-eea~~e~~ri~---~E~~~~~~~~~~~~~~~~~~g~ 508 (508) + +..+.-+-... ...+. ..+.+....-.+..+| T Consensus 377 p~~gGD~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~e 413 (419) T protein:vir:14 377 PVKGGDIYLSPMNMVDASKPQ-QLPVGKSEPTKAAIDE 413 (419) T ss_pred CCCCcCeeeeccccccccccc-cccCCCCCCccccccc Confidence 2 11111110000 00000 0011111112222222 No 251 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=74.43 E-value=0.16 Score=24.97 Aligned_cols=379 Identities=11% Similarity=0.047 Sum_probs=144.9 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHh-hcccccc-C---CHHHHHHHHHHHH--HhcCCCccccCccCCCccccc-ccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKI-TDDPRIS-I---DPDEYVRIQTDLD--YYSDKLQYIHYQASDGIKKKR-LKN 72 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~-~~~~~i~-~---~~~~~~~i~~~~~--~Y~g~~~~~~~~~~~~~~~~~-~~~ 72 (508) ||+|..++.+-- .-..-....+.+. -.++++. . +.....+-..|.+ -+.|.+..+... .+..... ... T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~t~~~~~ 76 (409) T protein:vir:83 1 MGFWSNLFGIPS--IPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATP--SWGSAQDKLRT 76 (409) T ss_pred Cchhhhhccccc--CCCcccccccccccCCCCceeeccCCCcchhhhhccccccccccccccccccc--CccccchhhHh Confidence 999987776400 0000000000000 0000000 0 0011111122222 112222111110 1111111 111 Q ss_pred ccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHH--hhhH--HHHHHHHHHHHhhcCCEEEEEE-EeC-Cee-E Q lcl|Aclame:pro 73 TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLE--DNDF--KNKFEEALEKGVALGGFAMRPY-IDG-NHI-K 145 (508) Q Consensus 73 ~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~--~n~f--~~~~~~~~~~a~~~G~~~~~~~-~d~-~~~-~ 145 (508) .+......|+.+|+-+-+=|+.+.-.+ ...+. +..++. -|.+ ...+.+.+...+.+|.+++.+. .+. |.+ . T Consensus 77 ~~~~v~acV~~Ia~~iA~lpl~~~~~~-~~~~~-~~~ll~~~PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~~G~~~~ 154 (409) T protein:vir:83 77 LIDVAWACIDLNASVLSSMPIYRMRNG-RIIDS-VAWMSNPDPEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGSDGYPIR 154 (409) T ss_pred hhHHHHHHHHHHHHhhccCceEEeeCC-ccccc-hhhhcccCCCCCCCHHHHHHHHHHHHhhCCcEEEEEEECCCCcEEE Confidence 112223334444444433354443111 11111 111222 1111 1222333333445588876544 343 443 4 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +..++|+.+-+...++++ .+ |++... + + T Consensus 155 L~pl~p~~v~v~~~~~g~------------------~~--------------y~~~~~-~--------~----------- 182 (409) T protein:vir:83 155 FRVVPPWLVNVELKKGAR------------------RE--------------YRIGGL-N--------V----------- 182 (409) T ss_pred EEEECCcceEEEEcCCce------------------EE--------------EEEccc-c--------C----------- Confidence 666677665442111110 01 111100 0 0 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHH-HHh-ccceeeechHHhcCCC Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWE-IRL-GQKHIAVQPGMLRFDD 303 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~-~~~~i~v~~~~~~~~~ 303 (508) ..+ +.++|.+-+ .+..+|+|-+.-+...|+... ...++... |+. +++.-++ ..++ T Consensus 183 ---~~e----------iiHir~~~~----~~~~~G~spi~~~~~~i~~~~-a~~~~~~~~f~nga~p~gil-----~~~~ 239 (409) T protein:vir:83 183 ---TDE----------ILHIRYQGN----TADAHGHGPLESAAPRQVVIG-LLQKYVQNLAETGGVPLYWL-----GVER 239 (409) T ss_pred ---ccc----------eEEeCCCCC----CCCcccccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceEe-----ecCC Confidence 000 123332111 123468898887777776444 44555444 454 3444333 1111 Q ss_pred C----CCccCCcc-cceEee-----ecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-ch Q lcl|Aclame:pro 304 E----HKPTFDTE-QNVYVG-----VLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KT 372 (508) Q Consensus 304 ~----~~~~~~~~-~~~~~~-----~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~T 372 (508) . ....+... ...+.+ +...+ +....+.++..-..-++.+..+...++|....|++|..+|..+.+. .| T Consensus 240 ~ls~e~~~~~~~~~~~~~~~nag~~~il~~-g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~t 318 (409) T protein:vir:83 240 RLSETEAVDLMDRWIESRSKYAGHPALVTG-GATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLT 318 (409) T ss_pred CCCHHHHHHHHHHHHHhhCCccCccceecC-CcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccc Confidence 1 00000000 001110 00111 0001111222222335666666678889999999999988654321 12 Q ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 373 ATEVVSNNSMTY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEE 451 (508) Q Consensus 373 Atei~~~~~~l~-~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~ 451 (508) -..+.......+ .++.-....++.+|..- ++. ....+.++++.-+..|..+.++. T Consensus 319 ysn~eq~~~~f~~~tL~P~~~~ie~~l~~~------------Ll~------------~~~~~~f~~~~llr~d~~~r~~~ 374 (409) T protein:vir:83 319 YSNIEQLFSFHDRSSLRPKATAVMAALDRW------------ALP------------SPQHLELNRDDYTRPSLVERATA 374 (409) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hCC------------CCcEEEeehhhhhccCHHHHHHH Confidence 111122222122 23333444444443321 111 12347778877777888888888 Q ss_pred HHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 452 DAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 452 ~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +.+++.+|+|+.-+++... |++. ..+.+.. ..|+ T Consensus 375 ~~~~~~~G~lT~NE~R~~~-glpp-------------------~~ggd~l---~~~g 408 (409) T protein:vir:83 375 YKIMIEAGVMEPNEARAME-RLHS-------------------EAAAVRL---SGGG 408 (409) T ss_pred HHHHHhCCCcCHHHHHHHh-CCCC-------------------CCCCccc---CCCC Confidence 8889899988887766532 2211 1111111 2222 No 252 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=73.55 E-value=0.17 Score=24.82 Aligned_cols=402 Identities=13% Similarity=0.118 Sum_probs=158.4 Q ss_pred CChHHHHHHHHHHHHHh--hhhhhh-----h-HHhhccccccCCHHHHHHHHHHHHHhcCCCcc---ccCccCCCccccc Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAA--TGVTGS-----L-SKITDDPRISIDPDEYVRIQTDLDYYSDKLQY---IHYQASDGIKKKR 69 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~--~~~~~~-----~-~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~ 69 (508) |+= |-+-..+-... +-...+ + ..+.+|+--.+++.++.+|.+.. =.|+... +-+.... T Consensus 1 m~~---~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a--~~gd~~~~~~L~~dm~~------ 69 (512) T protein:vir:19 1 MGR---ILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDA--ERGDLTAQADLAFDMEE------ 69 (512) T ss_pred Ccc---eeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHHh------ Confidence 211 00000000000 000000 0 11122333334444444433321 0111110 0000000 Q ss_pred cccccchHHHHHHHHHHhhhcCcceEeeC-CcH----HHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCCEEEEEEEe--C Q lcl|Aclame:pro 70 LKNTINMAKTAARRIASVVFNEKAEIHVK-DNN----EADKFLNDVLEDN-DFKNKFEEALEKGVALGGFAMRPYID--G 141 (508) Q Consensus 70 ~~~~~n~~~~iv~~~A~ll~~e~~~i~~~-~~~----~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~~~~~d--~ 141 (508) .-.-+...+-..+ .-|++-+..|.-. +.+ ..-+++++.|.+- +|...+..++ .|..+|-+++-..|+ + T Consensus 70 --~D~hi~s~l~~Rk-~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~ 145 (512) T protein:vir:19 70 --KDTHLFSELSKRR-LAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWGWLG 145 (512) T ss_pred --hChHHHHHHHHHH-HHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEeeeeC Confidence 0012333333333 4455556667532 211 2234677888653 4776666555 588889888877774 3 Q ss_pred Cee---EEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccc Q lcl|Aclame:pro 142 NHI---KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVP 218 (508) Q Consensus 142 ~~~---~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~ 218 (508) |.. ++.++++..|..- .+ ++ ..+. ++..+ .-|.++ T Consensus 146 g~~~~~~~~~r~~~~f~~~-~~-~~----------------------------------~~lr---~~~~~--~~G~~l- 183 (512) T protein:vir:19 146 KMRVPVALHHRDPALFCAN-PD-NL----------------------------------NELR---LRDAS--YHGLEL- 183 (512) T ss_pred Cceeeeeeeeeccccceec-cC-CC----------------------------------cEEE---ecCCC--CCceee- Confidence 332 2444444433210 00 00 0000 00000 001111 Q ss_pred ccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-HhccceeeechH Q lcl|Aclame:pro 219 LSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPG 297 (508) Q Consensus 219 l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~ 297 (508) |++.|+.. ..+...++|.|.+.+..|.-..--=+..+..|+.-+ +.|.|.+++ T Consensus 184 ---------------------~~~k~i~~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig--- 237 (512) T protein:vir:19 184 ---------------------QPFGWFMH--RAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMRVG--- 237 (512) T ss_pred ---------------------cCCceEEE--eccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEE--- Confidence 11222110 122344678899999887654433333444444434 357776554 Q ss_pred HhcCCCC-CCc---cCCc-----ccceEeeecCCCCCCCcceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCchhccccc Q lcl|Aclame:pro 298 MLRFDDE-HKP---TFDT-----EQNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN 367 (508) Q Consensus 298 ~~~~~~~-~~~---~~~~-----~~~~~~~~~~~~~~~~~i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 367 (508) +++.. ... .+.. ...-...+.. +..|+.++.. -..+.|.+.++.+=++|+..+ ++...-+..+ T Consensus 238 --ky~~~a~~~ek~~L~~al~~~~~~a~~iiP~----~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~i-LGqtlTs~~g 310 (512) T protein:vir:19 238 --KYPTGSTNREKATLMQAVMDIGRRAGGIIPM----GMTLDFQSAADGQSDPFMAMIGWAEKAISKAI-LGGTLTTEAG 310 (512) T ss_pred --ecCCCCCHHHHHHHHHHHHHHhhCcEEEecC----CceEEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhhccccc Confidence 22211 110 0000 0000111111 1234444432 233446666666656665443 3322222222 Q ss_pred c-ccchHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCH Q lcl|Aclame:pro 368 D-GVKTATEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNK 445 (508) Q Consensus 368 ~-~~~TAtei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~ 445 (508) + |...+.++- +.-....+..-.+.+...|. +||+-++.+.- + ... ..+.-+.+.|+..=+.|. T Consensus 311 ~~Gs~a~~~vh--~ev~~di~~aDa~~i~~tln~~li~~l~~~N~-------~-----~~~-~~~~~p~~~f~~~e~eDl 375 (512) T protein:vir:19 311 DKGARSLGEVH--DEVRREIRNADVGQLARSINRDLIYPLLALNS-------D-----STI-DINRLPGIVFDTSEAGDI 375 (512) T ss_pred ccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----CCC-CccccceEEecCCChhhH Confidence 2 211111121 22233444456666778885 68887765521 0 000 111235677887778887 Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc-ccccCCCCCCC Q lcl|Aclame:pro 446 DKQLEEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG-RSAILNGGDGE 508 (508) Q Consensus 446 ~~e~~~~~~~~~~Gi~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~-~~~~~~~~~g~ 508 (508) +..++...+++ .|+--.+.++.+.+|+++.+-.+.+...+...+....... ........+.+ T Consensus 376 ~~~a~~~~~l~-~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512) T protein:vir:19 376 TALSDAIPKLA-AGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEAALSAEDIPQED 438 (512) T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCCCCCccccccCCCccccccccccccccccCCCchh Confidence 77777776665 7876677888888888552221212111111111111110 00000011111 No 253 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=71.14 E-value=0.2 Score=24.42 Aligned_cols=420 Identities=14% Similarity=0.138 Sum_probs=183.7 Q ss_pred CChHHHHHHHHHHHHHhhhh--hhhh----HHhh-cc-----ccccCC------------------H---HHHHHHHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGV--TGSL----SKIT-DD-----PRISID------------------P---DEYVRIQTDL 47 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~--~~~~----~~~~-~~-----~~i~~~------------------~---~~~~~i~~~~ 47 (508) |.=|.-|-.+|+--+..=.. .+.+ .++. .| .-|..+ + ...+-|++++ T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYR 80 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHH Confidence 65555555555321110000 0000 0110 00 000000 0 1111222222 Q ss_pred HHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhh-----cCcceEeeCCcH-------HHHHHHHHHHHhhh Q lcl|Aclame:pro 48 DYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVF-----NEKAEIHVKDNN-------EADKFLNDVLEDND 115 (508) Q Consensus 48 ~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~-----~e~~~i~~~~~~-------~~~~~l~~~l~~n~ 115 (508) .++ ..+-....++..++=+. .+|+++.+++-+ ...+..+.++.--+ T Consensus 81 ~ma----------------------~~pEvd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~ 138 (524) T protein:vir:10 81 NLM----------------------NNYEVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLN 138 (524) T ss_pred HHh----------------------hccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhc Confidence 221 11222223333332221 235666664422 12344566666668 Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeC-----CeeEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEE Q lcl|Aclame:pro 116 FKNKFEEALEKGVALGGFAMRPYIDG-----NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFH 190 (508) Q Consensus 116 f~~~~~~~~~~a~~~G~~~~~~~~d~-----~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h 190 (508) |.++..+.+.....-|..+||..+|. |-..+..++|.++-++.- +......+.+.++- T Consensus 139 F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~~~~vi~~---- 201 (524) T protein:vir:10 139 FQRKGTDHFQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYIRE-------------IVTRMEDGVKIVDG---- 201 (524) T ss_pred cchhhhHHHhhheeeceEEEEEEeeCCCccccceeeeeeCCccceeeee-------------ecccCcccchhhcc---- Confidence 99999999999999999999999984 445688888888766521 11111111111111 Q ss_pred EEeCCceEEEEEEEEecCCcc--------ccCc--cccccccccccCCCcceee--cCCCcceEEEecCCccccccCCCc Q lcl|Aclame:pro 191 QWQDNGSYQITNELYKSDSPD--------IVGN--QVPLSTLPVYKELAPQVTI--SGLQRPLFAYFKTPGANNINIESP 258 (508) Q Consensus 191 ~~~~~g~~~I~~~ly~~~~~~--------~lG~--~v~l~~~~~~~~l~~~~~~--~g~~~~~f~~~~~~~~n~~~~~sp 258 (508) +-++.+|.-.+.. ..++ ++|-+. +++ +|+ +.. |. . T Consensus 202 --------~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dA----------Ivy~~SGL-------~d~---~~-----~ 248 (524) T protein:vir:10 202 --------YREFFVYDTGHESYCADGRIYSAGTKVKIPRAA----------VVYAHSGL-------LDC---CG-----K 248 (524) T ss_pred --------hhhheeecCCCcccccCcceecCCcceecchhh----------eeeeccCc-------ccC---CC-----C Confidence 1112222110000 0011 111100 111 111 000 00 0 Q ss_pred CCcchhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch---------HHh-----------cCCCCCCccCCcccce Q lcl|Aclame:pro 259 LGLGVVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP---------GML-----------RFDDEHKPTFDTEQNV 315 (508) Q Consensus 259 lG~S~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~-----------~~~~~~~~~~~~~~~~ 315 (508) .=+|-+.+|.--...|=-.-+.+ .+--|.-..|||- .- .++ -||..++.. .+++. T Consensus 249 ~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev--~ddrk 326 (524) T protein:vir:10 249 NIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKI--KNQQH 326 (524) T ss_pred ceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCee--ccchh Confidence 01233444433333332222222 2223455566663 11 111 123333332 11222 Q ss_pred Eeeec-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccc-cc--cchHHHHHHHHHHHHh Q lcl|Aclame:pro 316 YVGVL-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSN-DG--VKTATEVVSNNSMTYQ 385 (508) Q Consensus 316 ~~~~~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~-~~--~~TAtei~~~~~~l~~ 385 (508) +..+. -+++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..++ ++ ..-++||.-..-.... T Consensus 327 ~msMlEDyWLpRReGgrgTEItTLpGgqnl-gem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiKF~K 405 (524) T protein:vir:10 327 NMSMTEDYWLQRRDGKAVTEVDTMPGATGM-SDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELKFAK 405 (524) T ss_pred hhhhHhhhcccccCCCCccceeeccccCCc-ChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHHHHH Confidence 22221 122233346665543222 2346677778888888888887774332 12 2345667666655556 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHH-HHH--hCC- Q lcl|Aclame:pro 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDA-KVL--AIG- 459 (508) Q Consensus 386 ~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~-~~~--~~G- 459 (508) -+..++..|..-|.++++.=|.|-. .+. .-.+..... .|.++|. ....+=.+.++-+.+ .+. ..+ T Consensus 406 FI~rLR~rFs~lf~~~L~~qLilKg---iit----~eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpy 476 (524) T protein:vir:10 406 WIRQLQNKFEEIFLDPLKTNLILKK---IIT----EDEWEREIN--NIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPF 476 (524) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc---CCC----HHHHHHHhh--cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhh Confidence 6666677777777777665443311 111 111111112 3445554 333333333332221 111 112 Q ss_pred ---CCCHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 460 ---ALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 460 ---i~s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) ..|.+++.++....||+|.+++-++|++|....-...+....++= T Consensus 477 vGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 477 IGKYISHQTAMKDFLQMTDEEINQEAKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred hcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCChhhhcC Confidence 458888889999999999999999999997543222221111111 No 254 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=70.22 E-value=0.21 Score=24.28 Aligned_cols=361 Identities=11% Similarity=0.096 Sum_probs=131.2 Q ss_pred hhhhhhhHH-hhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEe Q lcl|Aclame:pro 18 TGVTGSLSK-ITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIH 96 (508) Q Consensus 18 ~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~ 96 (508) |+.-..|.+ ..+ .....+.+... ..+. .......--..+++.+|+-+-.=|+.+- T Consensus 1 Mg~f~~~f~~~~~-~~~~~~~~~~~------~~~~-----------------~~a~~~~~v~~~i~~ia~~ia~~p~~~~ 56 (385) T protein:vir:95 1 MGLFDSVFKRHSE-LSWMYDLEFLQ------DKSK-----------------KAYLKQIALNTVVEMVARTISQSEFRVM 56 (385) T ss_pred CchhhhhhccCcc-cccccchhhhh------ccch-----------------hhhhhhHHHHHHHHHHHHHHcccceeee Confidence 222111111 000 00011111000 0000 0000111113344555554444454443 Q ss_pred eCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCCeEEEEEEE Q lcl|Aclame:pro 97 VKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSNTNDISEAAIAS 171 (508) Q Consensus 97 ~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~ 171 (508) -.+.. ...-+..+|.. | ....-.+.++...+-.|.+++.+..+++.+ ++..+.+. ........ T Consensus 57 ~~~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~~~~-----~~~~~~~~--~~~~~~~~---- 124 (385) T protein:vir:95 57 KNNTK-EKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEGHFF-----VADDFEKE--DELGLYSH---- 124 (385) T ss_pred ecCcc-ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCCCee-----eccccccc--cccccccc---- Confidence 22211 11223333421 1 122333445666666777776543333221 11111110 00000000 Q ss_pred EEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccc Q lcl|Aclame:pro 172 RTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGAN 251 (508) Q Consensus 172 ~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n 251 (508) .|..... + .|.+. +. +|. . -..+++.+-.+ T Consensus 125 -----------~~~~~~~----~--~~~~~-~~-----------------~~~-----~----------eiih~~~~~~~ 154 (385) T protein:vir:95 125 -----------RFTNVLV----N--DFEFK-RV-----------------FTM-----D----------DVIYLKYNNQK 154 (385) T ss_pred -----------cceeeee----c--cccee-ee-----------------ecc-----c----------cEEEecCCCCC Confidence 0000000 0 01110 00 000 0 02334433221 Q ss_pred cccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCCCCccCCcc-cceEeeecCC------ Q lcl|Aclame:pro 252 NINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDEHKPTFDTE-QNVYVGVLSD------ 322 (508) Q Consensus 252 ~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------ 322 (508) +..+|.|.+.-+..++.. .++.. +..+.++-++ +... ..+++....+... ...|.+...+ T Consensus 155 ----~~~~G~s~~~~~~~~i~~---~~~~~---~~~~~~~g~l~~~~~~-~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~ 223 (385) T protein:vir:95 155 ----LDAFSLGLFEDYGEIFGR---MIDLQ---MLNNQIRGILKVDATK-FYNKEKQKELQAYIDTLFDAFQNNTIAVVP 223 (385) T ss_pred ----cccccchHHHHHHHHHHH---HHHHH---HhcCCCceEEEeCCcc-CCCHHHHHHHHHHHHHHhhhhhhcCCceEE Confidence 234588877766665543 22222 1233333322 1100 0111110000000 0111111000 Q ss_pred CCCCCcceEeecc------CCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 323 DNNGLGVKDMTTP------IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 323 ~~~~~~i~~~~~d------ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) -+++..++.++.. ....++.+..+...++|....|++|..++. ...|+++. ....++. T Consensus 224 l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~---~~sn~e~~-------------~~~~~~~ 287 (385) T protein:vir:95 224 LTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLG---EMADLEKT-------------IESYLQF 287 (385) T ss_pred cCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcC---CCcCHHHH-------------HHHHHHH Confidence 0112223433321 123466777777888999999999998852 11222221 1122333 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHhcCCCCH- Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRNYGMTD- 475 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~~~~~~d- 475 (508) +|..++..|....+.. +..... .....+.++++.-+..|.++.++...+++..|+|+.-+++... |+.+ T Consensus 288 ~l~P~~~~ie~~l~~~-L~~~~~--------~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~-g~~p~ 357 (385) T protein:vir:95 288 CINPLLRKIEAELNSK-FFYQDE--------YLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMT-GEEPA 357 (385) T ss_pred HHHHHHHHHHHHHHhh-cCChhh--------cccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCC Confidence 3444333333222111 111100 0123477788887888999999999999999999999988754 4432 Q ss_pred --HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 476 --EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 476 --eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..++-+-. ... .+-+.. -.++.+|| T Consensus 358 ~~~~gd~~~~~--~n~---~~~~~~--kgge~~~e 385 (385) T protein:vir:95 358 DDPELDKFIIT--KNL---QSADAF--KGGESNEE 385 (385) T ss_pred CCCCCceeeec--ccc---eecccc--cCCCCCCC Confidence 222111100 000 000111 11223333 No 255 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=61.76 E-value=0.35 Score=23.10 Aligned_cols=378 Identities=13% Similarity=0.087 Sum_probs=143.4 Q ss_pred CCHHHHHHHHHHHHHhcCC--CccccCccCCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHH-HHHHHHHHH Q lcl|Aclame:pro 35 IDPDEYVRIQTDLDYYSDK--LQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNE-ADKFLNDVL 111 (508) Q Consensus 35 ~~~~~~~~i~~~~~~Y~g~--~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~-~~~~l~~~l 111 (508) +|. .-.|. ...+......+...+ ...........|+.+|+-+-+=|+.+.-.+... ...-+-.+| T Consensus 1 ~~~-----------~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL 68 (723) T protein:vir:94 1 MTT-----------FPSGAGGWNAWSADSVFGNGAK-GWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLW 68 (723) T ss_pred Ccc-----------cccCCCccccccccccccccHH-HHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHH Confidence 110 00000 000111111111000 001111222333444443333354443222111 111233334 Q ss_pred Hh--hh---HHHHHHHHHHHHhhcCCEEEEEEEeC----Ce-eEEEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCc Q lcl|Aclame:pro 112 ED--ND---FKNKFEEALEKGVALGGFAMRPYIDG----NH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQT 181 (508) Q Consensus 112 ~~--n~---f~~~~~~~~~~a~~~G~~~~~~~~d~----~~-~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~ 181 (508) .. |. ...-...++...+-.|.+++.+..++ |. ..+..+++....++..+.+....-. T Consensus 69 ~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~------------- 135 (723) T protein:vir:94 69 NVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQA------------- 135 (723) T ss_pred hhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceee------------- Confidence 21 21 11223334445666788877665543 22 2344555554444322222110000 Q ss_pred EEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCc Q lcl|Aclame:pro 182 KYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGL 261 (508) Q Consensus 182 ~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~ 261 (508) + .+.+.++.. + |..+++ +. .+ ..+++.+-+ . +.-.|+ T Consensus 136 --~--------------~~~y~~~~~-~----G~~~~~---~~-----~d----------IiHir~~~~--~--dg~~G~ 172 (723) T protein:vir:94 136 --Q--------------IIGYVIERT-D----GVRVPV---LA-----DE----------MLWLRFSDP--Y--DPLAVM 172 (723) T ss_pred --e--------------eeEEEEEec-C----ceeEEe---cc-----cc----------eEEecCCCC--C--CCcccc Confidence 0 000000000 0 111111 00 00 233432211 1 223589 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhc-cceeeechHHhcCCCCCCc----cCC----cccceEeeecC-CC-------C Q lcl|Aclame:pro 262 GVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAVQPGMLRFDDEHKP----TFD----TEQNVYVGVLS-DD-------N 324 (508) Q Consensus 262 S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~~~~~~~~~~----~~~----~~~~~~~~~~~-~~-------~ 324 (508) |.+.-+...|......-....+-|++| ++.-++... ..+++... .|. ...+..+.+-. +. + T Consensus 173 Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~--~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~ 250 (723) T protein:vir:94 173 APWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG--DMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAG 250 (723) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC--CCCHHHHHHHHHHHHHHhhchhhcCcceeeccccccccccc Confidence 988877777765443333333445654 444333110 00111000 010 00111111100 00 1 Q ss_pred CCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 NGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQS 404 (508) Q Consensus 325 ~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~ 404 (508) ++-.++.++.+....++.+..+.....|....|++|..++...+..-..+...+- ...++.-..+.++.+|..- T Consensus 251 ~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~~~f---~~~tL~P~~~~ie~~ln~~--- 324 (723) T protein:vir:94 251 KGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAKAAV---WTETLIPQMEVMASITDLQ--- 324 (723) T ss_pred CCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHHHHH---HHHHHHHHHHHHHHHHhHh--- Confidence 2223444444444456777777778899999999998876433221111111111 1122222223333332221 Q ss_pred HHHHHhhhccccccccccccccccCcceEEEEeCCC--ccCCHHHHHHHHHHHHhCCCCCHHHHHHh--cCCCC--H--- Q lcl|Aclame:pro 405 IFELANAGALFDDGKPLFTLDSASQPLDIECHFDDG--VFVNKDKQLEEDAKVLAIGALSKQTFLQR--NYGMT--D--- 475 (508) Q Consensus 405 i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~--i~~d~~~e~~~~~~~~~~Gi~s~et~l~~--~~~~~--d--- 475 (508) +++. ....+.++|+.. +..|.++.++.+..++..|+|+.-+++.. +|-+. + T Consensus 325 ---------Ll~~-----------~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~ 384 (723) T protein:vir:94 325 ---------LLPD-----------IGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQM 384 (723) T ss_pred ---------hccc-----------ccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccc Confidence 1111 013456777753 46798999999999999999999998865 22111 0 Q ss_pred --------------------HHHHHHH---HHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 476 --------------------EQAAEEL---AKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 476 --------------------eea~~e~---~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) |.+...+ +++.++.+....+.......+..+|. T Consensus 385 ~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 440 (723) T protein:vir:94 385 TLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPGP 440 (723) T ss_pred eeccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCccc Confidence 1111111 22222222222222233333333342 No 256 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=57.41 E-value=0.43 Score=22.57 Aligned_cols=369 Identities=11% Similarity=0.021 Sum_probs=123.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|+++.. ++. .++... .+.+....... ..++ ...--... T Consensus 1 MGlf~~~~~--~~~-------~~~~~~-------~~~~~~~~~~~-~~~~----------------------~~~~v~~~ 41 (395) T protein:vir:98 1 MGILDFFSF--KKS-------GTLSDD-------DSGSTTSEKLT-NVVL----------------------KEDALYKC 41 (395) T ss_pred CcchhhhcC--CCc-------cccccc-------ccchhhhhhcc-hhhh----------------------hhHHHHHH Confidence 999987632 110 000000 01111000000 0000 00011112 Q ss_pred HHHHHHhhhcCcceEeeCCcHH-HHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNE-ADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQF 154 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~-~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~ 154 (508) ++.+|+-+-+=|+.+--.+++. .+.-+..+|.. | ....-.+.++...+-.|.+++.|..+.+. +.++.+ T Consensus 42 I~~ia~~iA~lp~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~-----~~~~~~ 116 (395) T protein:vir:98 42 VNYLARIISKSTFRLKTPEKLTENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGI-----YVADSF 116 (395) T ss_pred HHHHHHHHhhCceeEEecCCcccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCce-----ecCCcc Confidence 2333333322233332211111 11112223321 1 11222344466667778888766554421 112211 Q ss_pred EEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceee Q lcl|Aclame:pro 155 YPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTI 234 (508) Q Consensus 155 ~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~ 234 (508) ..+. .+.. ..|..+ . .+ .|.+.. .|.. .+ T Consensus 117 ~~~~----~~~~---------------~~~~~~---~-~~--~~~~~~-~~~~----------------------~e--- 145 (395) T protein:vir:98 117 TQDK----KISG---------------SQFKVS---R-VQ--GQTYEK-TFTF----------------------DQ--- 145 (395) T ss_pred cccc----cccC---------------ccccee---e-ec--Cceeee-EecC----------------------cc--- Confidence 1110 0000 001000 0 00 011100 0000 00 Q ss_pred cCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHH-HHHHHHHHH-HHHH-HhccceeeechHHhcCCCCCCc-cCC Q lcl|Aclame:pro 235 SGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLD-DINDTHDQF-IWEI-RLGQKHIAVQPGMLRFDDEHKP-TFD 310 (508) Q Consensus 235 ~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid-~lD~~~s~~-~~e~-~~~~~~i~v~~~~~~~~~~~~~-~~~ 310 (508) ..++|.+..+ ..+.+.+.+..+..++. .++...... .+-+ ..++....+ .......++... ... T Consensus 146 -------vih~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 213 (395) T protein:vir:98 146 -------VIYLKNDNSD----LMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRE-RAQENSDGGRQSKSDK 213 (395) T ss_pred -------EEEecCCCCC----ccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccc-cccccCCcHHHHHHHH Confidence 1233322111 11122222222222221 111111111 1111 111111111 100000110000 000 Q ss_pred c-ccceEeeecCC------CCCCCcceEeec------cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHH Q lcl|Aclame:pro 311 T-EQNVYVGVLSD------DNNGLGVKDMTT------PIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVV 377 (508) Q Consensus 311 ~-~~~~~~~~~~~------~~~~~~i~~~~~------dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 377 (508) . -...+.+...+ -.++..++.++. .....++.+..+...++|....|++|..++.+. .+.++.. T Consensus 214 ~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~---sn~e~~~ 290 (395) T protein:vir:98 214 DFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDI---ADNQKNY 290 (395) T ss_pred HHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCc---ccHHHHH Confidence 0 00001110000 011112222221 123446677777778889999999999885221 1111111 Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 378 SNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLA 457 (508) Q Consensus 378 ~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~ 457 (508) . .-.-.++.-....++.+|..- ++.... . ...+.|+|++-+..|.++.++...+++. T Consensus 291 ~--~f~~~tl~P~~~~ie~~l~~k------------ll~~~~-------~--~~g~~f~~~~l~~~d~~~~~~~~~~~~~ 347 (395) T protein:vir:98 291 E--LLLEGPIESLITNIVDGLEYA------------IFDKSE-------T--LQGSFIKVTGLKNYDLFSISNQADKLIS 347 (395) T ss_pred H--HHHHHHHHHHHHHHHHHHHHh------------cCChhh-------h--cCcceeeehhhhccCHHHHHHHHHHHHh Confidence 1 111122222333333333321 111000 0 1124477887778899999999999999 Q ss_pred CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 458 IGALSKQTFLQR--NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 458 ~Gi~s~et~l~~--~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) .|+|+.-+++.. .|-++++.+.+.+-. ..- .+-+..+++++.+.+ T Consensus 348 ~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~--~n~----~~~~~~gge~~~~~~ 394 (395) T protein:vir:98 348 SGFVFIDEVREEIGLPELPDGLGKVLYMT--KNY----ESVLERGGEVDEEVE 394 (395) T ss_pred CCCcCHHHHHHHhCCCCCCCCCCceeeec--ccc----eecccccCCCCCCCC Confidence 999999998875 333433333222211 000 011112223222222 No 257 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=53.06 E-value=0.54 Score=22.06 Aligned_cols=389 Identities=11% Similarity=0.076 Sum_probs=143.4 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccc--cccchHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLK--NTINMAK 78 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~--~~~n~~~ 78 (508) ||++++|.. ++.. . .+ .+.+ | ..|. ........+....... ..++--. T Consensus 1 Mg~~~~~~~--~~~~-----------~-----~~-~~~~------~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~ 50 (423) T protein:vir:81 1 MGFLQKLGL--APSV-----------V-----AT-PEPI------E---LVGP--IFESLKLSTKNMTVEQIWEDQPHLR 50 (423) T ss_pred CchhHhhcc--cccc-----------c-----cC-cccc------c---cccc--cccccccccchhhHHHHHHhhhHHH Confidence 999998731 1000 0 00 0000 0 1110 0000000000000000 0011122 Q ss_pred HHHHHHHHhhhcCcceE---eeCCc-HH-HHHHHHHHHHh-h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCee-E--- Q lcl|Aclame:pro 79 TAARRIASVVFNEKAEI---HVKDN-NE-ADKFLNDVLED-N---DFKNKFEEALEKGVALGGFAMRPYIDGNHI-K--- 145 (508) Q Consensus 79 ~iv~~~A~ll~~e~~~i---~~~~~-~~-~~~~l~~~l~~-n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~-~--- 145 (508) ..++.+|+-+-+=|+.+ +-++. +. .+-.+..++.. | ........++...+-.|.+++.+.-|.+.. . T Consensus 51 ~~i~~ia~~ia~lp~~~~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~ 130 (423) T protein:vir:81 51 TVTTFIARNVASLQLQAFERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLD 130 (423) T ss_pred HHHHHHHHhHhhCceEEEEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEE Confidence 33444444443334443 11111 11 11122333332 1 122233444556677788876665554321 1 Q ss_pred EEEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccc Q lcl|Aclame:pro 146 IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVY 225 (508) Q Consensus 146 i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~ 225 (508) +..+++..+.+. .. .++...-.|+....+ ..+ |..+. +|. T Consensus 131 l~p~~~~~v~~~--------------~~--~~~~~~~~Y~~~~~~--~~~------------------g~~~~---~~~- 170 (423) T protein:vir:81 131 IRPIPVSWVQRR--------------AY--KDGWGSLDYIIIESG--DND------------------GRSVK---VPG- 170 (423) T ss_pred Eeecccceeeee--------------ec--cCCCcceEEEEEEec--CCC------------------ceEEE---Ecc- Confidence 111112111110 00 011111112211110 000 11111 000 Q ss_pred cCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceeee--chHHhcC- Q lcl|Aclame:pro 226 KELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAV--QPGMLRF- 301 (508) Q Consensus 226 ~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~~~~- 301 (508) --..+++.+-++ +...|+|.+.-+...|......-.....-|++| .+..++ +..+... T Consensus 171 --------------~evih~r~~~~~----~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~ 232 (423) T protein:vir:81 171 --------------ERVIHRHGYNPK----TMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGK 232 (423) T ss_pred --------------cceEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCcc Confidence 012344433222 223589988887777765554333333335653 555444 1111100 Q ss_pred -CCCCCccCCcc-cceEeeecC--C----CCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc-ch Q lcl|Aclame:pro 302 -DDEHKPTFDTE-QNVYVGVLS--D----DNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KT 372 (508) Q Consensus 302 -~~~~~~~~~~~-~~~~~~~~~--~----~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~T 372 (508) +.+....+... ...|..-.. + -+++..++.++......+..+..+....+|....|++|..+|+..++. .+ T Consensus 233 l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn 312 (423) T protein:vir:81 233 WDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSN 312 (423) T ss_pred CCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCccc Confidence 00000000000 001110000 0 011223444444433335556666667789999999999998754432 22 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 373 ATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEED 452 (508) Q Consensus 373 Atei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~ 452 (508) .++....+ ...++.-....++.+|...+ +... +.....+.+.|+++.-+..|.++.++.. T Consensus 313 ~e~~~~~f--~~~~L~P~~~~ie~~l~~~L------------~~~~------~~~~~~~~~~fd~~~llr~d~~~r~~~~ 372 (423) T protein:vir:81 313 VREFRKAL--YGDNLGSWIRIIQDVMNLFL------------LPRV------GIDNEKFYFEFNLEEKLRASFEEAAEIK 372 (423) T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHhhhh------------cCcc------ccccCccEEEecchhhhccCHHHHHHHH Confidence 22222111 11233333344444433321 1100 0001123355666665667888888777 Q ss_pred HHHH-hCCCCCHHHHHHhcCCCCH-HHHHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 453 AKVL-AIGALSKQTFLQRNYGMTD-EQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 453 ~~~~-~~Gi~s~et~l~~~~~~~d-eea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) ..++ ++|+|+.-+++... |+.+ +..++-+. + .+.. .+..++..|| T Consensus 373 ~~~l~~~G~~T~NE~R~~~-gl~p~~gGD~~~~------p-~n~~---~~~~~~~~~~ 419 (423) T protein:vir:81 373 RAAVGNVAWMTINEVRAMD-NLPSIDGGDDLAR------P-LNTE---FGDSEDAPGE 419 (423) T ss_pred HHHHhCCCCcCHHHHHHHh-CCCCCCCcceeec------c-cccc---cCccCCCCCC Confidence 7665 56999998888653 4432 11111110 0 0111 1111122222 No 258 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=47.31 E-value=0.71 Score=21.41 Aligned_cols=425 Identities=13% Similarity=0.148 Sum_probs=180.7 Q ss_pred CCh---HHH---HHHHHHHHHHhhhhhhhhHHhhccccccC----CH-----------------------------HHHH Q lcl|Aclame:pro 1 MGL---IQR---IKDLFWKGAAATGVTGSLSKITDDPRISI----DP-----------------------------DEYV 41 (508) Q Consensus 1 m~~---~~~---ik~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~-----------------------------~~~~ 41 (508) |+| +.. +|.|-+.--.. ..+.+++-.. -++. ++ ...+ T Consensus 1 ~~~~~~~~~l~~~~~~~~~d~~~--~~~~~~~~~~--s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~e 76 (524) T protein:vir:98 1 MNFLGFGNVLSFFKNFAREDEIE--LEQQLKNDTG--SVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQ 76 (524) T ss_pred CCCcchhhHHHHhhhhhhhhhhh--HhhhhcCCcc--cccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHH Confidence 433 332 22222111111 0111111000 0000 00 0111 Q ss_pred HHHHHHHHhcCCCccccCccCCCccccccccccchHHHHHHHHHHhh-----hcCcceEeeCCcH-------HHHHHHHH Q lcl|Aclame:pro 42 RIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVV-----FNEKAEIHVKDNN-------EADKFLND 109 (508) Q Consensus 42 ~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~iv~~~A~ll-----~~e~~~i~~~~~~-------~~~~~l~~ 109 (508) -|++++.++ ..+-....++..++=+ ..+|+++.+++.+ ...+..+. T Consensus 77 LI~~YR~ma----------------------~~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~ 134 (524) T protein:vir:98 77 LINTYRGIM----------------------SYPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDN 134 (524) T ss_pred HHHHHHHHh----------------------hccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHH Confidence 122222221 1122222333333222 1235666664422 12344566 Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCEEEEEEEeC----CeeEEEEEcCCeEEEEEEc-CCCeEEEEEEEEEEEeecCCcEEE Q lcl|Aclame:pro 110 VLEDNDFKNKFEEALEKGVALGGFAMRPYIDG----NHIKIAWVRADQFYPLQSN-TNDISEAAIASRTQRTESNQTKYY 184 (508) Q Consensus 110 ~l~~n~f~~~~~~~~~~a~~~G~~~~~~~~d~----~~~~i~~v~a~~~~Pi~~d-~~~~~~~~f~~~~~~~~~~~~~~y 184 (508) ++.--+|.++..+.+.....-|..+||..+|+ |-..+..++|.++-++.-- ........ +.| T Consensus 135 Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~-------------~v~ 201 (524) T protein:vir:98 135 VLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGV-------------KVF 201 (524) T ss_pred HHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccch-------------hhc Confidence 66666899999999999999999999999874 3456788899887665210 00000000 011 Q ss_pred E-EEEEEEEeCCce-EEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcc Q lcl|Aclame:pro 185 T-LLEFHQWQDNGS-YQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLG 262 (508) Q Consensus 185 t-~lE~h~~~~~g~-~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S 262 (508) + ..|++.+...+. |...-..|.. ++ +-++|-+. +++. ..+.+... +++ +| T Consensus 202 ~~~~e~f~Y~~~~~~~~~~g~~~~~-~~---~ikI~~dA----------Ivy~-----hSGL~d~~--~~i-------is 253 (524) T protein:vir:98 202 RGYREFFVYSAPKAGYTYNGQIYQA-NQ---KIKIPRSA----------IVYA-----HSGLEDCS--NNI-------IG 253 (524) T ss_pred cceeeeeeeccCCCccccccceecC-CC---ceeechhh----------eeee-----ccCcccCC--CCe-------ee Confidence 0 112222211110 1111111111 00 11111111 1110 00111000 100 24 Q ss_pred hhhhHHHHHHHHHHHHHHH--HHHHHhccceeee-ch---------HHhc-----------CCCCCCccCCcccceEeee Q lcl|Aclame:pro 263 VVDNAKHVLDDINDTHDQF--IWEIRLGQKHIAV-QP---------GMLR-----------FDDEHKPTFDTEQNVYVGV 319 (508) Q Consensus 263 ~~~~~~~lid~lD~~~s~~--~~e~~~~~~~i~v-~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~ 319 (508) -+.+|.--...|=-.-+.+ .+--|.-..|||- .- .+++ ||..++.+- +++.+..+ T Consensus 254 yLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevr--ddrk~msM 331 (524) T protein:vir:98 254 YLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVK--NQQNNLSM 331 (524) T ss_pred ehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceee--ccccccch Confidence 4444433333332222222 2223455566663 11 1110 233333321 22222222 Q ss_pred c-------CCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccc--cchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 320 L-------SDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDG--VKTATEVVSNNSMTYQTRSSY 390 (508) Q Consensus 320 ~-------~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~--~~TAtei~~~~~~l~~~~~~~ 390 (508) . -+++.+.-|+++..--.. .-+..++-+.+.++...+.+.+-+..++++ ..-++||.-..-....-+..+ T Consensus 332 lEDyWLpRReGgrgTEItTLpggqnl-gem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiKF~KFI~rL 410 (524) T protein:vir:98 332 TEDYWLMRRDGKAITEVSTLPGGQNF-SDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGEITRDELKFSKFIRTL 410 (524) T ss_pred hhhhcccccCCCCccceeeccccCCc-ChHHHHHHHHHHHHHHhCCCceeccCCCCccccccccchhHHHHHHHHHHHHH Confidence 1 122233346665543222 234666777788888888887777544322 223556666655555566666 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeC--CCccCCHHHHHHHHHH-HH--hCC----CC Q lcl|Aclame:pro 391 LTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFD--DGVFVNKDKQLEEDAK-VL--AIG----AL 461 (508) Q Consensus 391 ~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~--d~i~~d~~~e~~~~~~-~~--~~G----i~ 461 (508) +..|..-|.++++.=|.|-. .+.. -.+..... .|.++|. ....+=.+.++-+.+. +. ..+ .+ T Consensus 411 R~rFs~lf~~~L~~qLilKg---iit~----eew~~i~~--~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 481 (524) T protein:vir:98 411 QIQFSPVLSDPLKTNLIAKK---IITE----DEWEENVS--KISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYV 481 (524) T ss_pred HHHHHHHHHHHHHHhhhhhc---CCCH----HHHHHHhh--cceEEEeecchHHHHHHHHHHHHHHHHHHHhcccccccc Confidence 66676666666665443311 1111 11111112 2445554 3333333333322211 11 112 77 Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCcccccCCC Q lcl|Aclame:pro 462 SKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNG 504 (508) Q Consensus 462 s~et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~ 504 (508) |.+++.++....||+|.+++-+.|++|....-...+....++= T Consensus 482 s~dyi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 482 SHKYIMKEILRMSDEDIDEQAKLIEEESKEERFKNPEAEEENF 524 (524) T ss_pred chHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCcCCccccccC Confidence 8888889999999999999999999886443222221111111 No 259 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=40.51 E-value=0.97 Score=20.66 Aligned_cols=408 Identities=8% Similarity=-0.004 Sum_probs=138.4 Q ss_pred CCh-----------------HHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHH-HHHH-HHHHHHHhcCCCccccCcc Q lcl|Aclame:pro 1 MGL-----------------IQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPD-EYVR-IQTDLDYYSDKLQYIHYQA 61 (508) Q Consensus 1 m~~-----------------~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-i~~~~~~Y~g~~~~~~~~~ 61 (508) +|+ ++++.+++.+...+++ ........-.+.+ ..++ +.....++.+.-..+.. T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn-- 149 (651) T protein:vir:99 78 FGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQ------TGPNQAKTPATPERVKELARQDYHGVGWLALEMLTD-- 149 (651) T ss_pred cCceeeecccCCCCccchHHHHHHHHHhhccchhhc------ccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhc-- Confidence 111 2223332222111111 0111111111221 1111 11111111111111100 Q ss_pred CCCccccccccccchHHHHHHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--hh--HHHHHHHHHHHHhhcCCEEEEE Q lcl|Aclame:pro 62 SDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--ND--FKNKFEEALEKGVALGGFAMRP 137 (508) Q Consensus 62 ~~~~~~~~~~~~~n~~~~iv~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n~--f~~~~~~~~~~a~~~G~~~~~~ 137 (508) +. +-|..+....+.++ .+.. +.+.....+..++.. |. ....+...+ +....+..++.. T Consensus 150 --~~---------g~pv~L~~lp~~~~-----Rv~~-~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~-q~~~~~~~~~~~ 211 (651) T protein:vir:99 150 --IE---------GRPVGLAYVPARTV-----RVRR-PQNRFDQPRHPEEGRYVDGDVADIASRGYV-QIRNGNRRYFGE 211 (651) T ss_pred --Cc---------cchhhhhhcChhhe-----eeec-ccccccchhhhhhhcccccccchhHHHHHH-HHHhcCcceEEE Confidence 00 00000111111100 1110 011111111111110 00 000111111 223345667766 Q ss_pred EEeC-Cee-EEEEEcCCeEEEEEEcCCCe-EEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccC Q lcl|Aclame:pro 138 YIDG-NHI-KIAWVRADQFYPLQSNTNDI-SEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVG 214 (508) Q Consensus 138 ~~d~-~~~-~i~~v~a~~~~Pi~~d~~~~-~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG 214 (508) +-+. +.+ .+...+++.+.++...+... ....+. ... .|.++. + +.. + T Consensus 212 ~g~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~---------~~~--------------~g~~~~--~---~~~--~ 261 (651) T protein:vir:99 212 AGDRYRGQEVVIDESGDEPTIRYREDEESEREPIFV---------DRE--------------TGDVTT--G---DAN--G 261 (651) T ss_pred eeccccceeeeeccCCcceeEEeccCcceeeeeecc---------cce--------------eeeEEE--c---CCC--c Confidence 6553 222 22334444444332222111 000000 000 011000 0 000 0 Q ss_pred ccccccccccccCCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhc-cceee Q lcl|Aclame:pro 215 NQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIA 293 (508) Q Consensus 215 ~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~ 293 (508) . ..+|. . -..++|.+- ..+..+|+|.+..+...|......-....+-|+.| .+..+ T Consensus 262 ~----~~~~~-----~----------eViHir~~~----~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gi 318 (651) T protein:vir:99 262 L----ENRPA-----N----------ELIFIPNPS----ILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMV 318 (651) T ss_pred e----eEecc-----c----------ceEEecCCC----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceE Confidence 0 00100 0 023444332 12345799999988888755554444444556654 44444 Q ss_pred e--chHHhcCCCCC--CccCC---cccceEeeecCCC-----CCCCcceEeeccC---CHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 294 V--QPGMLRFDDEH--KPTFD---TEQNVYVGVLSDD-----NNGLGVKDMTTPI---RTVQYKDAIDHFIKEFEVQIGL 358 (508) Q Consensus 294 v--~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~-----~~~~~i~~~~~di---r~e~~~~~l~~~l~~i~~~~g~ 358 (508) + |...+..+... ...|. .+......+.... .-+.+++....++ ...++.+..+...+.|....|+ T Consensus 319 l~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgV 398 (651) T protein:vir:99 319 IKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEV 398 (651) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCC Confidence 3 32221110000 00010 1111100011100 0112444433332 2345666667778899999999 Q ss_pred Cchhcccccccc-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEe Q lcl|Aclame:pro 359 STGTFSYSNDGV-KTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF 437 (508) Q Consensus 359 s~~~~~~~~~~~-~TAtei~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f 437 (508) +|..+|+..++. .|+++....+ ...++.-+.+.++.+|...+ +... .......+.+.| T Consensus 399 Pp~~lG~~~~~~~sn~E~~~~~f--~~~tL~P~~~~ie~eln~kL------------l~~~-------e~~~~~~i~~ef 457 (651) T protein:vir:99 399 PPVKIGVTDSANRSNSDQQDKDF--ALEVIQPEQHTFAEWLYQII------------HQQA-------LGVTDWTIEYEL 457 (651) T ss_pred CHHHhccCCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHhh------------cCcc-------ccccCceEEEEe Confidence 999998865543 2332222111 11222233333333332211 1110 011123344555 Q ss_pred CC--CccCCHHHHHHHHHHHHhCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHhccCCCCC---------CcccccCCC Q lcl|Aclame:pro 438 DD--GVFVNKDKQLEEDAKVLAIGALSKQTFLQR--NYGMTDEQAAEELAKIQSEAPTDTFE---------GGRSAILNG 504 (508) Q Consensus 438 ~d--~i~~d~~~e~~~~~~~~~~Gi~s~et~l~~--~~~~~deea~~e~~ri~~E~~~~~~~---------~~~~~~~~~ 504 (508) +. -...|..+.++....+++.|+|+...++.. +|-+.++....-+..++...+..... .+.....++ T Consensus 458 ~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge~~~~~~~~~~~~~~~ 537 (651) T protein:vir:99 458 RGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGETEAVHEPPEENKIGE 537 (651) T ss_pred ccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccccccccCCCCcccccCcccccccc Confidence 43 445688888888888999999999998875 34444333322222211111100000 000011111 Q ss_pred CCCC Q lcl|Aclame:pro 505 GDGE 508 (508) Q Consensus 505 ~~g~ 508 (508) .+++ T Consensus 538 ~e~~ 541 (651) T protein:vir:99 538 REWD 541 (651) T ss_pred chhh Confidence 1111 No 260 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=39.45 E-value=1 Score=20.54 Aligned_cols=421 Identities=12% Similarity=0.055 Sum_probs=150.8 Q ss_pred hhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccC---CCcccc---cc-ccccchHHHHHHHHHHhhhc Q lcl|Aclame:pro 18 TGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS---DGIKKK---RL-KNTINMAKTAARRIASVVFN 90 (508) Q Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~~~~~~---~~-~~~~n~~~~iv~~~A~ll~~ 90 (508) |..+++ .---+++.++..|-.- -.+|....+..... ++.+.- +. ..-.-+...+-... .-|++ T Consensus 1 ~~~~~~-------~~~gl~p~rl~~i~~~--~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~D~hi~s~l~~Rk-~av~~ 70 (488) T protein:vir:95 1 MADITE-------TQESLPPFRMGEVGSL--GLKVKNGRIYEEPRQALRFPESIKTFQLMMRDPAVAASVNIIK-MFVRK 70 (488) T ss_pred CCCccc-------cCCCCCHHHHHHHHHH--hhccccchhhccchhhhcccchHHHHHHHhhChHHHHHHHHHH-HHHhc Confidence 322221 2224567777777532 22222111110000 000000 00 00112333333333 33445 Q ss_pred CcceEeeCC---cH----HHHHHHHHHHHhhh--HHHHHHHHHHHHhhcCCEEEEEEEeCCee---EEEEEcCCe-EEEE Q lcl|Aclame:pro 91 EKAEIHVKD---NN----EADKFLNDVLEDND--FKNKFEEALEKGVALGGFAMRPYIDGNHI---KIAWVRADQ-FYPL 157 (508) Q Consensus 91 e~~~i~~~~---~~----~~~~~l~~~l~~n~--f~~~~~~~~~~a~~~G~~~~~~~~d~~~~---~i~~v~a~~-~~Pi 157 (508) -+..|...+ ++ .+.+++++++++-+ |...+..++ .|.-+|-+++-..|+.+.. .+..+..+. +.|. T Consensus 71 ~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~ 149 (488) T protein:vir:95 71 VNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWA 149 (488) T ss_pred CCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeee Confidence 555665322 11 12356777776543 445555554 6888898888888864221 111111111 1111 Q ss_pred EEcCCCeEEEEEEEE----EEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCccee Q lcl|Aclame:pro 158 QSNTNDISEAAIASR----TQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVT 233 (508) Q Consensus 158 ~~d~~~~~~~~f~~~----~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~ 233 (508) . ++.... +...+.+++-.+..-+.+. ...++...+.+.. . T Consensus 150 ~--------i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~-----~ 193 (488) T protein:vir:95 150 K--------LPIRNQSTLDKWYFDEDFRRVTGVRQNLR-----------------------NVSHIAGAINLGE-----R 193 (488) T ss_pred e--------eeecCcccccceeeccCCCceeecccccc-----------------------ccccccccccccc-----c Confidence 0 000000 0000001100000000000 0000000000000 0 Q ss_pred ecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH---hccceeeechHHhcCCCCC-CccC Q lcl|Aclame:pro 234 ISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR---LGQKHIAVQPGMLRFDDEH-KPTF 309 (508) Q Consensus 234 ~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~---~~~~~i~v~~~~~~~~~~~-~~~~ 309 (508) ..++.-|.+.|+- ...+...++|+|.+.+..|.-..--=+..+..|+.-++ .+-+.+.+|......+.+. +..+ T Consensus 194 ~~~~~lP~~kfi~--~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l 271 (488) T protein:vir:95 194 PLTRKLPRAKFML--FKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAF 271 (488) T ss_pred cccccccccceEE--EeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHH Confidence 1122223332221 11233457899999998875433111122222222222 3445555544332211111 0000 Q ss_pred Ccc-cc----------eEeeecCCCCCC---Cc--ceEeecc-CCHHHHHHHHHHHHHHHHHHhCCCch-hccccccccc Q lcl|Aclame:pro 310 DTE-QN----------VYVGVLSDDNNG---LG--VKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTG-TFSYSNDGVK 371 (508) Q Consensus 310 ~~~-~~----------~~~~~~~~~~~~---~~--i~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~-~~~~~~~~~~ 371 (508) ... .. ....+..+.+.. .. ++..... -....+.+.++.+=++|+... ++.. |.+..++|.. T Consensus 272 ~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i-LGqtLT~~~~~~Gs~ 350 (488) T protein:vir:95 272 VQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF-MSDVLAMGQSKYGSF 350 (488) T ss_pred HHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH-hccccccccCcchhh Confidence 000 00 000011100000 00 1111110 111234444454444554333 3322 1122222211 Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 372 TATEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLE 450 (508) Q Consensus 372 TAtei~~~~~~l~~~~~~~~~~~~~al~-~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~ 450 (508) ..-++- ..-....+.+-.+.+...|. +||+-++.+. .+ . ...-+.|.|+..-+.|.++.++ T Consensus 351 Al~~vh--~ev~~~i~~aDa~~i~~tln~~li~~l~~~N-------fg-----~----~~~~P~~~~~~~e~~Dl~~~ae 412 (488) T protein:vir:95 351 SLADSK--TSLLAMSVDILLKQIKNVINRDLVAQTYALN-------MW-----D----DEEHVQITYDDIETPDLEAIGS 412 (488) T ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC-----C----CCCccEEEecCcChhhHHHHHH Confidence 111111 11122333344455666664 5777665542 01 0 1112467788777888778888 Q ss_pred HHHHHHhCCCCCH----HHHHHhcCCCCHHHHHHHHHHHHHhccCCCCCCc---ccccCCC---CCCC Q lcl|Aclame:pro 451 EDAKVLAIGALSK----QTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGG---RSAILNG---GDGE 508 (508) Q Consensus 451 ~~~~~~~~Gi~s~----et~l~~~~~~~deea~~e~~ri~~E~~~~~~~~~---~~~~~~~---~~g~ 508 (508) .+.+++..|+... +.++.+.+|+++.+-.+.+.. ...+...+..+ ...+.+. .+++ T Consensus 413 ~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (488) T protein:vir:95 413 YIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSE--KLSPNSQSRSGDGYKTAGEGTAKTPSAK 478 (488) T ss_pred HHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccc--cCCCCCCCCCCcccCCCcccCCcccccc Confidence 8888999997654 678888899865332111111 11111111100 0000000 0111 No 261 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=33.51 E-value=1.4 Score=19.87 Aligned_cols=346 Identities=12% Similarity=0.113 Sum_probs=106.8 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|.|++.+.|... . ........... .++++.. +.+. .--..| T Consensus 1 M~~f~k~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~---~~v~------------------------------~~v~~i 44 (378) T protein:vir:85 1 MNLFGKVVSFSRGKL-N-NDTQRVTAWQN-EAVEYTS---AFVT------------------------------NIHNKI 44 (378) T ss_pred Cchhhhhhhhhhccc-c-cCCcceeeeec-cchhhhh---HHHH------------------------------HHHHHH Confidence 999999988764211 0 00000000000 0000000 0000 011223 Q ss_pred HHHHHHhhhcCcceEe-eCCc--------HHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIH-VKDN--------NEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKI 146 (508) Q Consensus 81 v~~~A~ll~~e~~~i~-~~~~--------~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i 146 (508) ++..|++ |+.+- -+.+ ...+.-|..+|.. | ....-....+...+-.|.+++.|.+++ T Consensus 45 a~~iA~l----p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~----- 115 (378) T protein:vir:85 45 ANEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDS----- 115 (378) T ss_pred HHhHhhC----ceeEEEEeccccccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecC----- Confidence 3333333 22210 0000 0001112233321 1 011112223444556677775443321 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+|++... ++ ..+++.|..-|. T Consensus 116 -------------~~g~~~~~-----~~---~~~~~~~~~~dv------------------------------------- 137 (378) T protein:vir:85 116 -------------ETGELLDL-----LF---ANDKKEYKPEEL------------------------------------- 137 (378) T ss_pred -------------CCceEEEE-----Ee---cCCCEEEcccce------------------------------------- Confidence 11111100 00 011112211110 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDE 304 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~ 304 (508) .+++.|+. . .. +.+.+ ..++++++ ..++.+.++-++ |. .+..+.. T Consensus 138 ----------------ih~~~~~~--~--~~--~~~~~---~~a~~~~~-------~~~~~~~~~g~l~~~~-~l~~~~~ 184 (378) T protein:vir:85 138 ----------------VRLVSPFY--I--NE--DTSIL---DNALASIQ-------TKLEQGKLRGLLKINA-FLDIDNT 184 (378) T ss_pred ----------------EEEecCcC--c--cc--hhhHH---HHHHHHHH-------HHHhcCCcceEEEeCC-cCCHHHH Confidence 00000000 0 00 00111 11111111 112222222111 00 0000000 Q ss_pred --CCccCCcc-------cceEeeecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH Q lcl|Aclame:pro 305 --HKPTFDTE-------QNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE 375 (508) Q Consensus 305 --~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 375 (508) ....|... .+....+.. +++..++.++.+....+ +..++.+..+|....|++|+.++.. ++ | T Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~vl--~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~s-----~~-e 255 (378) T protein:vir:85 185 QEYREKALATIKNMQEGSSYNGLTPV--DNKTEIVELKKDYSVLN-KDEIELIKSELLTGYFMNENILLGT-----AT-Q 255 (378) T ss_pred HHHHHHHHHHHHHhhcccccccceec--CCCceEEeccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhcCC-----ch-H Confidence 00000000 000000000 11112333332222222 3445556678889999999887421 11 1 Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 376 VVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKV 455 (508) Q Consensus 376 i~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~ 455 (508) .... ..++.+|..++..|-.-.+..-+.+... ..+.......++.++++.-...|.++.++.+.++ T Consensus 256 ~~~~------------~f~~~tL~P~~~~ie~~l~~kLl~~~er--~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~ 321 (378) T protein:vir:85 256 EQQI------------YFYNSTIIPLLIQLEKELTYKLISTNRR--RVVKGNLYYERIIVDNQLFKFATLKELIDLYHEN 321 (378) T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHhhcCChhhh--hhhhhccccceeeecchhhhhcCHHHHHHHHHHH Confidence 1111 1223333333333222111100000000 0000001122455666676778999999999999 Q ss_pred HhCCCCCHHHHHHhc--CCCCHHH---HHHHHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 456 LAIGALSKQTFLQRN--YGMTDEQ---AAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 456 ~~~Gi~s~et~l~~~--~~~~dee---a~~e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..|+|+.-+++... |.+..-+ +...+..+ +.+.. .+.+..+.-++.++. T Consensus 322 ~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~--~~~~~-~~~~~~~~~~~~e~~ 376 (378) T protein:vir:85 322 INGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAV--KNLSD-LQGSRKDVASTDETN 376 (378) T ss_pred HhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccc--ccchh-hcCccCCCCCCCCCC Confidence 999999999988752 2221100 00001110 00000 111111111111111 No 262 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=27.01 E-value=1.9 Score=19.07 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=83.2 Q ss_pred EEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeecCCCcceEEEecCCccccc Q lcl|Aclame:pro 174 QRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI 253 (508) Q Consensus 174 ~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~~~f~~~~~~~~n~~ 253 (508) .+.. .++.++...... .+.. -|..+. ++ +.+ ..++|.+-+. T Consensus 1 ~r~~-~dg~~~y~~~~~-------------~~~~-----~g~~~~---~~-----~~e----------ilH~r~~~~~-- 41 (219) T protein:vir:98 1 MRVC-KDGNYKYLMKKS-------------LYDT-----KSEIYE---YN-----KND----------VIFIKLYDPM-- 41 (219) T ss_pred Ccee-ecCeEEEEEecc-------------eecC-----CceeEE---ec-----ccc----------EEEecCCCCC-- Confidence 1111 111121111000 0000 011110 00 001 1234433221 Q ss_pred cCCCcCCcchhhhHHHHHHHHHHHHHHHHHHH-Hh-ccceee--echHHhcCCCCCCc----cCCc-----c-cceEeee Q lcl|Aclame:pro 254 NIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RL-GQKHIA--VQPGMLRFDDEHKP----TFDT-----E-QNVYVGV 319 (508) Q Consensus 254 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~-~~~~i~--v~~~~~~~~~~~~~----~~~~-----~-~~~~~~~ 319 (508) +.-+|+|.+..+...|. ++....++...| +. +.+.-+ +|...+. ++... .|.. + ..+.+.. T Consensus 42 --~~~~Glspi~~a~~~i~-~~~aa~~~~~~~f~Ng~~p~gil~~~~~~l~--~e~~~~~~~~~~~~~g~~n~~~~~l~~ 116 (219) T protein:vir:98 42 --QQVYGSPDYVGGITSAL-LNSDATIFRRRYYSNGAHMGFILYSTDPDMT--EEMEDEIAERIRDSKGVGNFRSMFVNI 116 (219) T ss_pred --CCcceecHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceEEEeCCCCCC--HHHHHHHHHHHHHhcCcccccceeEec Confidence 12259998877766665 344556665544 54 444432 3432221 11110 0100 0 0111111 Q ss_pred cCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhcccccccc---chHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 320 LSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV---KTATEVVSNNSMTYQTRSSYLTMVEK 396 (508) Q Consensus 320 ~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~---~TAtei~~~~~~l~~~~~~~~~~~~~ 396 (508) ..++.++..++.++......++.+.-+.....|....|++|..+|....+. .|+++....+ ...++.-....++. T Consensus 117 ~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f--~~~tL~P~~~~ie~ 194 (219) T protein:vir:98 117 AGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAY--QADEVLPLQEIIAE 194 (219) T ss_pred CCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHHHH--HHHHHHHHHHHHHH Confidence 111223334455555555566777777778899999999999988654332 2333222211 11222223333333 Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHH Q lcl|Aclame:pro 397 AIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKD 446 (508) Q Consensus 397 al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~ 446 (508) +|..- -+ .+..+.+.|++..+.|.. T Consensus 195 ~ln~~-----------~~--------------~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 195 SINSD-----------YE--------------IKSALKVNFKQPEKRDKN 219 (219) T ss_pred Hhhhh-----------hc--------------CCCccEEeecCcccccCC Confidence 33210 01 122456888888888866 No 263 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=25.58 E-value=2 Score=18.88 Aligned_cols=345 Identities=15% Similarity=0.142 Sum_probs=111.1 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|.|++++++.... +.......... .++++.. ..+.. --..| T Consensus 1 M~if~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~---~~v~~------------------------------~v~~I 44 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLN--NDTQRVTAWQN-EAVEYTS---AFVTN------------------------------IHNKI 44 (378) T ss_pred CchhHHhHhhhhcccc--cCcceeeeeec-chhhhhh---HHHHH------------------------------HHHHH Confidence 9999999987642111 00000000000 0000000 00000 11223 Q ss_pred HHHHHHhhhcCcceE-eeCC-----c---HHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEI-HVKD-----N---NEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKI 146 (508) Q Consensus 81 v~~~A~ll~~e~~~i-~~~~-----~---~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i 146 (508) ++..|++ |+.+ .-.. + ...+.-|..+|.. | ....-....+...+-.|.+++.|.+++ T Consensus 45 a~~iA~l----p~~~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~----- 115 (378) T protein:vir:94 45 ANEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDS----- 115 (378) T ss_pred HHhHhhC----ceeeeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeC----- Confidence 3444433 2211 0000 0 0001112222321 1 111122223455566677775443321 Q ss_pred EEEcCCeEEEEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCcccccccccccc Q lcl|Aclame:pro 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) Q Consensus 147 ~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~ 226 (508) .+|++.... +. .+++.|..-|. T Consensus 116 -------------~~g~~~~~~-----~~---~~~~~~~~~dv------------------------------------- 137 (378) T protein:vir:94 116 -------------ETGELLDLL-----FA---NDKKEYKPEEL------------------------------------- 137 (378) T ss_pred -------------CCCcEEEEE-----Ee---cCcEEechhce------------------------------------- Confidence 112211100 00 01111110000 Q ss_pred CCCcceeecCCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHhccceeee--chHHhcCCCC Q lcl|Aclame:pro 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAV--QPGMLRFDDE 304 (508) Q Consensus 227 ~l~~~~~~~g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~~~~~~~ 304 (508) .+++.|...+ .+.+.++.+ .++++. .++.++++-++ |. .+..+.. T Consensus 138 ----------------ih~~~~~~~~------~~~~~~~~~---~~~~~~-------~~~~~~~~g~l~~~~-~l~~~~~ 184 (378) T protein:vir:94 138 ----------------VRLTSPFYIN------EDTSILDNA---LASIQT-------KLEQGKLRGLLKINA-FLDIDNT 184 (378) T ss_pred ----------------eeecCcCCcc------cchhHHHHH---HHHHHH-------HHhhCCcccceeeCC-cCCHHHH Confidence 0111111000 001111111 111111 11122211110 00 0000000 Q ss_pred --CCccCCcc-cceEe------eecCCCCCCCcceEeeccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHH Q lcl|Aclame:pro 305 --HKPTFDTE-QNVYV------GVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATE 375 (508) Q Consensus 305 --~~~~~~~~-~~~~~------~~~~~~~~~~~i~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 375 (508) ....|... .+.+. .+.. +++..++.++.+....+ +..++.+.++|....|++|..+.. |++| T Consensus 185 ~~~~e~~~~~~~~~~~~~n~~~~~vl--~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgvPp~~l~g------~~~e 255 (378) T protein:vir:94 185 QEYREKALATIKNMQEGSSYNGLTPV--DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TATQ 255 (378) T ss_pred HHHHHHHHHHHHHhhcccccccceec--cCCceEEEccCChHHhh-HHHHHHHHHHHHHHhCCCHHHhcC------CchH Confidence 00000000 00000 0000 11122444433322222 455566677888999999887741 2222 Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 376 VVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKV 455 (508) Q Consensus 376 i~~~~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~ 455 (508) .... .-...++.-....++.+|..-+-.=..... +.......++.++++.-...|.++.++...++ T Consensus 256 ~~~~-~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~-------------g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~ 321 (378) T protein:vir:94 256 EQQI-YFYNSTIIPLLIQLEKELTYKLISTNRRRV-------------VKGNLYYERIIVDNQLFKFATLKELIDLYHEN 321 (378) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhcCChhHhhh-------------hhhhcccceeEeecchhhhcCHHHHHHHHHHH Confidence 1111 111122223333333333321100000000 00011123466777887888999999999999 Q ss_pred HhCCCCCHHHHHHhcCCCCH-HHHHH-----HHHHHHHhccCCCCCCcccccCCCCCCC Q lcl|Aclame:pro 456 LAIGALSKQTFLQRNYGMTD-EQAAE-----ELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) Q Consensus 456 ~~~Gi~s~et~l~~~~~~~d-eea~~-----e~~ri~~E~~~~~~~~~~~~~~~~~~g~ 508 (508) +..|+|+.-+++... |+++ +..++ .+..+ +.... .+.+..+.-.+++++ T Consensus 322 ~~~G~~t~NE~R~~~-g~~p~~ggd~~~~~~n~~~~--~~~~~-~~~~~~~~~~~~e~~ 376 (378) T protein:vir:94 322 INGPIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAV--KNLSD-LQGNRKDVTSTDETN 376 (378) T ss_pred HhCCCcCHHHHHHHh-CCCCCCCCCeeeecccccch--hcchh-cccccCCCCCCCCCC Confidence 999999999988752 3322 00000 01010 00000 011111111111111 No 264 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=24.39 E-value=2.2 Score=18.73 Aligned_cols=353 Identities=15% Similarity=0.144 Sum_probs=111.2 Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhccccccCCHHHHHHHHHHHHHhcCCCccccCccCCCccccccccccchHHHH Q lcl|Aclame:pro 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~n~~~~i 80 (508) ||+|+++ |++.. .. ..+ .+.+. +.. +... .......-... T Consensus 1 Mg~f~~l---~~~~~-------~~-~~~------~~~~~----------~~~----~~~~---------~~l~~~~v~~~ 40 (376) T protein:vir:78 1 MGFFSEL---FKRNK-------EI-EWM------WDLDF----------LED----KTTK---------VYLKKMALNTC 40 (376) T ss_pred Cchhhhh---hccCC-------cc-ccc------cchhh----------ccc----cchh---------hhhhhHHHHHH Confidence 9999864 43210 00 000 00000 000 0000 00000111222 Q ss_pred HHHHHHhhhcCcceEeeCCcHHHHHHHHHHHHh--h---hHHHHHHHHHHHHhhcCCEEEEEEEeCCeeEEEEEcCCeEE Q lcl|Aclame:pro 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLED--N---DFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFY 155 (508) Q Consensus 81 v~~~A~ll~~e~~~i~~~~~~~~~~~l~~~l~~--n---~f~~~~~~~~~~a~~~G~~~~~~~~d~~~~~i~~v~a~~~~ 155 (508) ++.+|+-+-.=|+.+.-.+ ...+..+..+|.. | ....-.+.++...+-.|.+++.+..+++... ++. + T Consensus 41 i~~Ia~~ia~~p~~~~~~~-~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~-----~~~-~ 113 (376) T protein:vir:78 41 VKHIARTIAKSDFRLKNGE-TSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLI-----ADS-Y 113 (376) T ss_pred HHHHHHhhcccceeecccc-ccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeee-----ccc-e Confidence 3333332222233332111 1111112222221 1 1122233345555666777766655553321 111 2 Q ss_pred EEEEcCCCeEEEEEEEEEEEeecCCcEEEEEEEEEEEeCCceEEEEEEEEecCCccccCccccccccccccCCCcceeec Q lcl|Aclame:pro 156 PLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTIS 235 (508) Q Consensus 156 Pi~~d~~~~~~~~f~~~~~~~~~~~~~~yt~lE~h~~~~~g~~~I~~~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~ 235 (508) |+.. ..+....+ ..+.. . .|.+. ..|..+ + + T Consensus 114 ~~~~--~~~~~~~~---------------~~~~~---~---~~~~~-~~~~~~------------e----------v--- 144 (376) T protein:vir:78 114 VRKE--FAFFPDVF---------------EGVTV---K---DYRYN-RNFSMD------------D----------V--- 144 (376) T ss_pred eecc--cceeeeee---------------eeeee---e---cceee-eeeccc------------c----------E--- Confidence 2210 01100000 00000 0 00000 001000 0 0 Q ss_pred CCCcceEEEecCCccccccCCCcCCcchhhhHHHHHHHHHHHHHHHHHH-HHhcc-ceee-e-chHHhcCCCCCCccCCc Q lcl|Aclame:pro 236 GLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWE-IRLGQ-KHIA-V-QPGMLRFDDEHKPTFDT 311 (508) Q Consensus 236 g~~~~~f~~~~~~~~n~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~~-~~i~-v-~~~~~~~~~~~~~~~~~ 311 (508) ..|.+...|.... +.+....+..++. ...+. +..+. +-+. + +...+ +++....+.. T Consensus 145 ----ih~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~ 204 (376) T protein:vir:78 145 ----IFLEYGNERLSAF-------TDGMFEDYGELFG-------KMIRAQMRNFQIRGAVNFKMAGVA--DKDKQTKLQE 204 (376) T ss_pred ----EEeccCCCCchhh-------hhHHHHHHHHHHH-------HHHHHHHhcCCCceeEEEccCCCC--CHHHHHHHHH Confidence 0000111111110 0011111111111 11111 11111 1111 1 00000 0000000000 Q ss_pred c-cceEeeecCC------CCCCCcceEeec---cC--CHHHHHHHHHHHHHHHHHHhCCCchhccccccccchHHHHHHH Q lcl|Aclame:pro 312 E-QNVYVGVLSD------DNNGLGVKDMTT---PI--RTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSN 379 (508) Q Consensus 312 ~-~~~~~~~~~~------~~~~~~i~~~~~---di--r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~~~ 379 (508) . ...+.+...+ -+++..++.++. ++ ...+..+..+...++|....|++|..++.+.+ +.++. T Consensus 205 ~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~~~s---~~e~~--- 278 (376) T protein:vir:78 205 YIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHGDMA---DLSNN--- 278 (376) T ss_pred HHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---CHHHH--- Confidence 0 0011110000 011112222221 11 22356777777788999999999999863221 22111 Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCcceEEEEeCCCccCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) Q Consensus 380 ~~~l~~~~~~~~~~~~~al~~li~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ei~i~f~d~i~~d~~~e~~~~~~~~~~G 459 (508) .. ..++.+|..++..|..-.+.. ++.. ....+.+++..-+..|..+.++...+++..| T Consensus 279 ~~----------~f~~~~l~P~~~~ie~~l~~k-ll~~-----------~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G 336 (376) T protein:vir:78 279 MK----------AYMEYCIDPLTKKLEDELNAK-LFTF-----------SEFLAGEHIKIIHKKDIIENAEAVDKLVASG 336 (376) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHhh-hCCc-----------ccceecccchhhcccCHHHHHHHHHHHHhCC Confidence 11 112223333333322211110 0100 1122334444445678888888888999999 Q ss_pred CCCHHHHHHhc--CCCCHHHHHHHHHHHHHhccCCCCCCcccccCCCCCC Q lcl|Aclame:pro 460 ALSKQTFLQRN--YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDG 507 (508) Q Consensus 460 i~s~et~l~~~--~~~~deea~~e~~ri~~E~~~~~~~~~~~~~~~~~~g 507 (508) +++.-+++... |-+++.++.+-+- +.+-..-..+|.+| T Consensus 337 ~~t~NE~R~~lg~~p~~~g~~d~~~~----------~~n~~~~~~~~e~g 376 (376) T protein:vir:78 337 SFNRNEVRELLGAERVDNPELDKYLI----------TKNYQSADEGGEDG 376 (376) T ss_pred CcCHHHHHHHhCCCCCCCCCCceeee----------ccCceehhccccCC Confidence 99998877642 2222211111110 00001111233333 Done!