BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:3963|NCBI_annot:putative terminase large subunit|genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID:95120 4 (462 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 966 0.0 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 924 0.0 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 773 0.0 gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: pu... 259 5e-71 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 146 5e-37 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 130 4e-32 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 101 2e-23 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 101 2e-23 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 100 7e-23 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 99 1e-22 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 97 5e-22 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 96 9e-22 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 92 1e-20 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 92 1e-20 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 88 2e-19 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 70 5e-14 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 53 8e-09 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 35 0.001 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 34 0.003 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 33 0.009 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 33 0.010 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 32 0.011 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 32 0.013 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 32 0.018 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 31 0.025 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 31 0.025 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 30 0.073 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 29 0.10 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 28 0.16 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 27 0.49 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 27 0.58 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 27 0.62 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 27 0.62 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 26 0.76 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 26 1.3 gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3... 25 2.5 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 24 3.5 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 24 3.8 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 24 3.9 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 24 4.1 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 24 4.4 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 24 4.4 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 23 8.2 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 23 8.3 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/462 (100%), Positives = 462/462 (100%) Query: 1 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLP 60 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLP Sbjct: 1 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLP 60 Query: 61 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSD 120 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSD Sbjct: 61 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSD 120 Query: 121 IFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL 180 IFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL Sbjct: 121 IFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL 180 Query: 181 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT 240 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT Sbjct: 181 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT 240 Query: 241 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY 300 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY Sbjct: 241 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY 300 Query: 301 CDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 CDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN Sbjct: 301 CDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 Query: 361 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY 420 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY Sbjct: 361 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY 420 Query: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF Sbjct: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/462 (97%), Positives = 456/462 (98%) Query: 1 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLP 60 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND+EHDVLVLNLP Sbjct: 1 MDKIALGAKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDNEHDVLVLNLP 60 Query: 61 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSD 120 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNE LSTVFSKNVRNT+Q+ KAD +KIVYSD Sbjct: 61 PRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNETLSTVFSKNVRNTLQEEKADENKIVYSD 120 Query: 121 IFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL 180 IFD+ IK GDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL Sbjct: 121 IFDAAIKYGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVL 180 Query: 181 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT 240 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT Sbjct: 181 EKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQT 240 Query: 241 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY 300 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY Sbjct: 241 NEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNY 300 Query: 301 CDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 CDTADTGKDYLCSIVWGET+DGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN Sbjct: 301 CDTADTGKDYLCSIVWGETTDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 Query: 361 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY 420 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVR PNDWRTRFPEYY Sbjct: 361 NGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRFPNDWRTRFPEYY 420 Query: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF Sbjct: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/400 (95%), Positives = 389/400 (97%), Gaps = 2/400 (0%) Query: 62 RHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDI 121 RHGKSLTLGKFVEWVLGNDHTKKIMTGSYNE LSTVFSKNVRNT+Q+ KAD +KIVYSDI Sbjct: 2 RHGKSLTLGKFVEWVLGNDHTKKIMTGSYNETLSTVFSKNVRNTLQEEKADENKIVYSDI 61 Query: 122 FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 181 FD+ IK GDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE Sbjct: 62 FDAAIKYGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 121 Query: 182 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTN 241 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTN Sbjct: 122 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTN 181 Query: 242 EMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYKKIWNYC 301 EMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEY KIWNYC Sbjct: 182 EMLCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSEYNKIWNYC 241 Query: 302 DTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNN 361 DTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNN Sbjct: 242 DTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNN 301 Query: 362 GGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYYQ 421 GGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVR PNDWRTRFPEYYQ Sbjct: 302 GGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRFPNDWRTRFPEYYQ 361 Query: 422 AMTTYQREGKNKHDDAPDATTGIAETMTTR--KAKLKSFK 459 AMTTYQREGKNKHDDAPDATTGIAETM+ + KA LKSF+ Sbjct: 362 AMTTYQREGKNKHDDAPDATTGIAETMSGKRIKAGLKSFR 401 >gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 Length = 322 Score = 259 bits (662), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 141/282 (50%), Positives = 181/282 (64%), Gaps = 12/282 (4%) Query: 191 MLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTNEMLCDDVLT 250 MLSRLE GGKIII MTRW S+DLAGRAL + G +V+HIN KA E N MLC++VL+ Sbjct: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGN-MLCEEVLS 59 Query: 251 LEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYN-------ARSEYKKIWNYCDT 303 L YK KV+ MG DIASANYQQEPID+KG LY+ F+TY+ + I Y DT Sbjct: 60 LNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDT 119 Query: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGG 363 AD G DYLCSIV+G + VLD++YT++ ME TE A N VN + IE N+GG Sbjct: 120 ADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGG 178 Query: 364 RSFARSVRDKIQGKVAC---AVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY 420 R+FAR+V+ ++ K ++ F Q NK ARI SNS W+ +H+ P +WR R+ +YY Sbjct: 179 RAFARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYY 238 Query: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 +AM +YQREGKNKHDDA T+ K+ K +GG+ Sbjct: 239 KAMVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGY 280 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 146 bits (368), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 129/482 (26%), Positives = 222/482 (46%), Gaps = 51/482 (10%) Query: 10 IELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSLTL 69 IEL+KR + DY Y+ + +CE+ Q + D E + +PPRH KS+T+ Sbjct: 21 IELAKRSYRDYVTYSHFGDYQL-FEHTELICEKLQHII-DGEQKYYIFEMPPRHSKSMTI 78 Query: 70 GK-FVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFDSKIKD 128 + F + L + K+++T SY++ L+ F + R+ I K+ +FD I Sbjct: 79 TETFPSYFLMKNPKKRVITTSYSDALAKQFGRKNRDKI--------KMAGDQLFDIHINP 130 Query: 129 GDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFV 188 ++ WS+ +TS G ATG GAD++IIDD IKN EEA + T+ +K + + Sbjct: 131 ANSGVTDWSIDQYGGGMYSTSMLGGATGRGADLLIIDDPIKNREEAESKTIRDKIYQEWE 190 Query: 189 NTMLSRLESGGKIIINMTRWHSEDLAGRALRE--LPKNGYRVKHINFK--AFNEQTNEML 244 +T +RL G +I+ MTRWH +DL GR L+ LP R+ I + + + L Sbjct: 191 STFFTRLHKGHSVIVIMTRWHEDDLIGRLLKANTLPWERIRLPAIAEENDLLGREIGQAL 250 Query: 245 CDDVLTLEDYKRKV-KTMGADIASANYQQEPIDVKGRLYSE--FQTYNARSEYKKIWNYC 301 C ++ E++ KT+G+ ++ YQQ P +G ++ E + Y E++K +N Sbjct: 251 CPELGYNEEWAEITKKTVGSRTWASLYQQRPRPAEGAIFKEKWLRYYVPSEEFRKKYNLG 310 Query: 302 DTA-------------------DTGK-DYLCSIVWGETSDGFADVLDIIYTQKPMEYTEN 341 + DT K D++ VW F +D I+ + + T N Sbjct: 311 EDVAILPRLFDKSAQSWDMAFKDTKKSDFVAGHVWNRKKADFF-FIDRIHDRMGLPETLN 369 Query: 342 AVANQLINNRVNASR-IERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSY 400 AV I + + ++ IE G + ++++ +I G + E KE R Y+ + Sbjct: 370 AVRRLTIKHPLAIAKYIEEKANGPAVMQTLKGEITGMIGVEPE-----GGKETRAYAVTP 424 Query: 401 WIEQ-HVRLPND-WRTRFPEYYQAMTTYQREGKNKHDDAPDATT-GIAETMTTRKAKLKS 457 E +V P+ + + + M + +HDD DA T + + M +++ L Sbjct: 425 LFESGNVYFPHPLYAPWISDVIEEMLAFP---NGEHDDDVDAMTQALVKLMIGQQSLLDR 481 Query: 458 FK 459 +K Sbjct: 482 YK 483 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 130 bits (326), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 132/483 (27%), Positives = 213/483 (44%), Gaps = 52/483 (10%) Query: 9 KIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGK 65 +IE +K+ + P F + + + +E Q F D + L++ PPR GK Sbjct: 19 RIEKAKKSLMHFTTQTKPDFITG--FFNILIAQELQKFYQDVVDGKQPRLMIYAPPRSGK 76 Query: 66 S-LTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFDS 124 S L +F WV G + +I+ SY+ L++ + +V+ I D +Y IF + Sbjct: 77 SELFSRRFPAWVFGQNPELQIIACSYSADLASRMNLDVQRII-------DDPIYHSIFPN 129 Query: 125 ---KIKD-----GDAAKN--LWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 IK+ G +N ++ + Y + G TG GADI IIDD +K+A+EA Sbjct: 130 TALNIKNIATISGKPLRNSEIFEIVGHLGAYRSAGVGGGITGMGADIAIIDDPVKDAKEA 189 Query: 175 NNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFK 234 N+ TV + WDW+ T+ +RL +++ MTRWH +DLAGR ++E G + + + F Sbjct: 190 NSQTVRDSIWDWYTTTLYTRLSPKSGVLLGMTRWHEDDLAGRLIKEAENGGDQWRIVKFP 249 Query: 235 AFNEQTNEM------LCDDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLY--SEFQ 286 A E+ E L + LE + + +G+ +A YQQ P + G + S F Sbjct: 250 AIAEEDEEFRKEGEPLHPERFDLERLNKIRQAVGSQAWNALYQQRPSNKGGGIIKGSWFG 309 Query: 287 TYNARSEYKKIWNYCDTADTGK---DYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAV 343 Y K Y DTA K DY IV G+ +DG A +LD+I + E + Sbjct: 310 RYKVPPIIKVKAIYADTAQKTKQHNDYSVFIVAGKGADGKAYILDLIRGKWEAPELEQTL 369 Query: 344 ANQLINNR-------VNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIY 396 + ++ + + +E G S +++R Q + D +K R+ Sbjct: 370 KDVWAKHKAKKETGILTRANVEDKASGTSLIQTIRRNNQIPITPIQVD----ADKYTRVL 425 Query: 397 SNSYWIEQ-HVRLPND--WRTRFPEYYQAMTTYQREGKNKHDDAPDA-TTGIAETMTTRK 452 +IE +V LP W F +A T + HDD DA I++ + K Sbjct: 426 GVQGYIESGYVMLPESAPWIADFINECEAFTATD---SHAHDDQVDALVMAISDILGKPK 482 Query: 453 AKL 455 + L Sbjct: 483 SLL 485 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 55 LVLNLPPRHGKSLTLGKF-VEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADV 113 L++ PP+ GKS + V L + +I+ Y + L+ S+ R+ I+++ + V Sbjct: 94 LLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKCRDLIKRHGSGV 153 Query: 114 -DKIVYSDIFDS---KIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIK 169 D + + I D K++ G + WS+ G +AT GT TG AD+ IIDD K Sbjct: 154 RDAMTGAQIEDKLGLKLERGANKVSEWSIEGGTGGLVATGLGGTITGKPADLFIIDDPYK 213 Query: 170 NAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALR---ELPKNGY 226 + EA++AT K W +RL G I+ TRWH EDLAG+ L ELPK Sbjct: 214 HMSEADSATYRAKVDLWMATVATTRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQR 273 Query: 227 RVKHINFKAFNEQ----------TNEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPID 276 +HIN A E+ M+ T E ++ + +G + A YQ P + Sbjct: 274 TWRHINIPAIAEEGIKDALDRAPGEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTN 333 Query: 277 VKGRLYSEFQTYNARSEYKKIWNYC-----DTADTGKDYLCSIVWGE-TSDG 322 G L+ + R I D AD+G+ I+ G T DG Sbjct: 334 PAGGLFQRSWFEDRRLTGTPILPVASIVGIDPADSGEGDETGIIAGTLTGDG 385 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 55 LVLNLPPRHGKSLTLGKF-VEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADV 113 L++ PP+ GKS + V L + +I+ Y + L+ S+ R+ I+++ + V Sbjct: 92 LLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKCRDLIKRHGSGV 151 Query: 114 -DKIVYSDIFDS---KIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIK 169 D + + I D K++ G + WS+ G +AT GT TG AD+ IIDD K Sbjct: 152 RDAMTGAQIEDKLGLKLERGANKVSEWSIEGGSGGLVATGLGGTITGKPADLFIIDDPYK 211 Query: 170 NAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALR---ELPKNGY 226 + EA++AT K W +RL G I+ TRWH EDLAG+ L ELPK Sbjct: 212 HMSEADSATYRAKVDLWMATVATTRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQR 271 Query: 227 RVKHINFKAFNEQ----------TNEMLCDDVLTLEDYKRKVKTMGADIASANYQQEPID 276 +HIN A E+ M+ T E ++ + +G + A YQ P + Sbjct: 272 TWRHINIPAIAEEGIKDALDRAPGEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTN 331 Query: 277 VKGRLYSEFQTYNARSEYKKIWNYC-----DTADTGKDYLCSIVWGE-TSDG 322 G L+ + R I D AD+G+ I+ G T DG Sbjct: 332 PAGGLFQRSWFEDRRLTGTPILPVASIVGIDPADSGEGDETGIIAGTLTGDG 383 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 99.8 bits (247), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 112/462 (24%), Positives = 197/462 (42%), Gaps = 42/462 (9%) Query: 10 IELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGKS 66 I L++ F + +L+ Y R A+ +C E F++D + VL+L PP+HGKS Sbjct: 35 INLARTNFAAFVSLVHRPRY-RHSAFSARVCAEIDKFIDDLLEGKRPVLMLTAPPQHGKS 93 Query: 67 LTLGKFVEWVL-----GNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDI 121 + + + L G +I +Y L+ +N + K V + V+ + Sbjct: 94 SLISRCLAPYLYGRLTGLLPAVRIANATYALPLA---RRNATDAKSIMKEPVYRAVFPHV 150 Query: 122 FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 181 K G N + + G + G TGF D+ IIDD KNAEEA +A V + Sbjct: 151 SLIGFKGGKDTSNEFDVPAG-GEFRGVGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQD 209 Query: 182 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQ-- 239 +W+ + +L+RL+ +I+ T W + DL R R++ + ++F A N+ Sbjct: 210 GLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRKM-EGQPNFTLLSFPALNDPDQ 268 Query: 240 ---TNEMLCDDVLTLEDYKRKVKTMGADIA----SANYQQEPIDVKGRLYS--EFQTYNA 290 ++ ++ K++ M +I+ SA YQQ P+ G ++ Q Y+A Sbjct: 269 IGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPREHLQYYHA 328 Query: 291 ---RSEYKKIWNYCDTA---DTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVA 344 ++ ++ CD D++ VWG+T+D ++D + T A+A Sbjct: 329 ADLPKQFVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIA 388 Query: 345 NQLINNRVNASR--IERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSY-W 401 + L SR IE+ G + ++ +E +KEAR ++ ++ W Sbjct: 389 D-LKRKHAAVSRVYIEKAANGAALIDMLKKHFP-----MLEGVPPLGSKEARAHAVAWVW 442 Query: 402 IEQHVRLPN-DWRTRFPEYYQAMTTYQREGKNKHDDAPDATT 442 V LP+ D R +T++ + HDD+ D T Sbjct: 443 SNNCVMLPHPDERPGIGPVVNEITSFP-DTVTGHDDSVDGMT 483 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 114/463 (24%), Positives = 200/463 (43%), Gaps = 44/463 (9%) Query: 10 IELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGKS 66 I L++ F + +L+ Y R A+ +C E F++D + VL+L PP+HGKS Sbjct: 35 INLARTNFAAFVSLVHRPRY-RHSAFSARVCAEIDKFIDDLLEGKRPVLMLTAPPQHGKS 93 Query: 67 LTLGKFVEWVL-----GNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDI 121 + + + L G +I +Y L+ +N + K V + V+ + Sbjct: 94 SLISRCLAPYLYGRLTGLLPAVRIANATYALPLA---RRNATDAKSIMKEPVYRAVFPHV 150 Query: 122 FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 181 K G N + + G + G TGF D+ IIDD KNAEEA +A V + Sbjct: 151 SLIGFKGGKDTSNEFDVPAG-GEFRGVGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQD 209 Query: 182 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQ-- 239 +W+ + +L+RL+ +I+ T W + DL R R++ + ++F A N+ Sbjct: 210 GLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRKM-EGQPNFTLLSFPALNDPDQ 268 Query: 240 ---TNEMLCDDVLTLEDYKRKVKTMGADIA----SANYQQEPIDVKGRLYS--EFQTYNA 290 ++ ++ K++ M +I+ SA YQQ P+ G ++ Q Y+A Sbjct: 269 IGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPREHLQYYHA 328 Query: 291 ---RSEYKKIWNYCDTA---DTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVA 344 ++ ++ CD D++ VWG+T+D ++D + T A+A Sbjct: 329 ADLPKQFVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIA 388 Query: 345 NQLINNRVNASRI---ERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSY- 400 + L SR+ E NG ++ D ++ K +E +KEAR ++ ++ Sbjct: 389 D-LKRKHAAVSRVYIEEAANGA-----ALIDMLK-KHFPMLEGVPPLGSKEARAHAVAWV 441 Query: 401 WIEQHVRLPN-DWRTRFPEYYQAMTTYQREGKNKHDDAPDATT 442 W V LP+ D R +T++ + HDD+ D T Sbjct: 442 WSNNCVMLPHPDERPGIGPVVNEITSFP-DTVTGHDDSVDGMT 483 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 96.7 bits (239), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 110/463 (23%), Positives = 202/463 (43%), Gaps = 44/463 (9%) Query: 10 IELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGKS 66 I L++ F + +L+ YK A+ +C E F++D + VL+L PP+HGKS Sbjct: 35 INLARTNFAAFVSLVHRPRYKHS-AFSARVCAEIDKFIDDLLDGKRPVLMLTAPPQHGKS 93 Query: 67 LTLGKFVEWVL-----GNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDI 121 + + + L G +I +Y L+ S + ++ +++ V + V+ + Sbjct: 94 SLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKE---PVYRAVFPHV 150 Query: 122 FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 181 K N + + +G + G TGF D+ IIDD KNAEEA +A V + Sbjct: 151 SLIGFKGNKDTSNEFDVPEG-GEFRGVGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQD 209 Query: 182 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQ-- 239 +W+ + +L+RL+ +I+ T W + DL R R++ + ++F A N+ Sbjct: 210 GLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRKM-EGQPNFTLLSFPALNDPDQ 268 Query: 240 ---TNEMLCDDVLTLEDYKRKVKTMGADIA----SANYQQEPIDVKGRLYSE-----FQT 287 ++ ++ K++ M +I+ SA YQQ P+ G ++S ++ Sbjct: 269 IGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFSRDHLQYYRV 328 Query: 288 YNARSEYKKIWNYCDTA---DTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVA 344 ++ ++ CD D++ VWG+T+D ++D + T A+A Sbjct: 329 AELPKQFVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIA 388 Query: 345 NQLINNRVNASRI---ERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSY- 400 + L SR+ E NG ++ D ++ K +E +KEAR ++ ++ Sbjct: 389 D-LKRKHAAVSRVYIEEAANGA-----ALIDMLK-KHFPMLEGVPPLGSKEARAHAVAWV 441 Query: 401 WIEQHVRLPN-DWRTRFPEYYQAMTTYQREGKNKHDDAPDATT 442 W V LP+ D R +T++ + HDD+ D T Sbjct: 442 WSNNCVMLPHPDERPGIGPVVNEITSFP-DTITGHDDSVDGMT 483 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 95.9 bits (237), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 110/472 (23%), Positives = 203/472 (43%), Gaps = 44/472 (9%) Query: 10 IELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGKS 66 I L++ F + +L+ YK A+ +C E F++D + VL+L PP+HGKS Sbjct: 35 INLARTNFAAFVSLVHRPRYKHS-AFSARVCAEIDKFIDDLLDGKRPVLMLTAPPQHGKS 93 Query: 67 LTLGKFVEWVL-----GNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDI 121 + + + L G +I +Y L+ S + ++ +++ V + V+ + Sbjct: 94 SLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKE---PVYRAVFPHV 150 Query: 122 FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLE 181 K N + + +G + G TGF D+ IIDD KNAEEA +A V + Sbjct: 151 SLIGFKGNKDTSNEFDVPEG-GEFRGVGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQD 209 Query: 182 KHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQ-- 239 +W+ + +L+RL+ +I+ T W + DL R R++ + ++F A N+ Sbjct: 210 GLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRKM-EGQPNFTLLSFPALNDPDQ 268 Query: 240 ---TNEMLCDDVLTLEDYKRKVKTMGADIA----SANYQQEPIDVKGRLYSE-----FQT 287 ++ ++ K++ M +I+ SA YQQ P+ G ++ ++ Sbjct: 269 IGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPRDHLQYYRV 328 Query: 288 YNARSEYKKIWNYCDTA---DTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVA 344 ++ ++ CD D++ VWG+T+D ++D + T A+A Sbjct: 329 AELPKQFVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIA 388 Query: 345 NQLINNRVNASRI---ERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSY- 400 + L SR+ E NG ++ D ++ K +E +KEAR ++ ++ Sbjct: 389 D-LKRKHAAVSRVYIEEAANGA-----ALIDMLK-KHFPMLEGVPPLGSKEARAHAVAWV 441 Query: 401 WIEQHVRLPN-DWRTRFPEYYQAMTTYQREGKNKHDDAPDATTGIAETMTTR 451 W V LP+ D R +T++ + HDD+ D T + R Sbjct: 442 WSNNCVMLPHPDERPGIGPVVNEITSFP-DTVTGHDDSVDGMTIALHQLCLR 492 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 92.0 bits (227), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 32 DRAYLVTMCEEFQS-----FLNDDEHDVLVLNLPPRHGKSLTLGKFVEWVLGNDHT--KK 84 D Y+VT E S L + L +++PP+ GKS TL + H +K Sbjct: 82 DPNYVVTPAIELISTSIERVLTSPKQINLEISMPPQEGKS-TLAAVATPLRALQHNPHRK 140 Query: 85 IMTGSYNEILSTVFSKNVRNTIQQNKADV----DKIVYSDIFDSKIKDGDAAKNLWSLSD 140 I+ +Y L+ S+ +R I+ DV + D K+ G WS++ Sbjct: 141 IILATYALDLAETHSRTMREWIETYGTDVVDPLTGLPVEDKIGLKLARGANKVTAWSVAG 200 Query: 141 GYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGK 200 G +A TG AD++IIDD KN EA++A ++ +WF + +RL Sbjct: 201 GRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDAS 260 Query: 201 IIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ 239 II+ TRWH EDLAG+ + R LP+N + IN A E+ Sbjct: 261 IIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEK 302 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 92.0 bits (227), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 32 DRAYLVTMCEEFQS-----FLNDDEHDVLVLNLPPRHGKSLTLGKFVEWVLGNDHT--KK 84 D Y+VT E S L + L +++PP+ GKS TL + H +K Sbjct: 82 DPNYVVTPAIELISTSIERVLTSPKQINLEISMPPQEGKS-TLAAVATPLRALQHNPHRK 140 Query: 85 IMTGSYNEILSTVFSKNVRNTIQQNKADV----DKIVYSDIFDSKIKDGDAAKNLWSLSD 140 I+ +Y L+ S+ +R I+ DV + D K+ G WS++ Sbjct: 141 IILATYALDLAETHSRTMREWIETYGTDVVDPLTGLPVEDKIGLKLARGANKVTAWSVAG 200 Query: 141 GYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGK 200 G +A TG AD++IIDD KN EA++A ++ +WF + +RL Sbjct: 201 GRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDAS 260 Query: 201 IIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ 239 II+ TRWH EDLAG+ + R LP+N + IN A E+ Sbjct: 261 IIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEK 302 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 140/349 (40%), Gaps = 37/349 (10%) Query: 8 AKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSL 67 A + R + + P + R L + + LN L +++PP+ GKS Sbjct: 62 ATVRTKYRHPAEMAAAVTPGY--RITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSS 119 Query: 68 TLGKFVEW-VLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVD----KIVYSDIF 122 + L + ++I+ +Y + L+ + S+ R I + A + + D Sbjct: 120 LCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKI 179 Query: 123 DSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEK 182 ++ G + WS+ G LA T TG AD++IIDD KN EA++AT Sbjct: 180 GLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRAN 239 Query: 183 HWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ 239 WF + L+RL II+ TRWH EDLAG+ L + L + +H+N A E+ Sbjct: 240 VELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEE 299 Query: 240 ----------TNEMLC--DDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLY----- 282 M+ D ++ + K +G A YQ P + G ++ Sbjct: 300 GIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF 359 Query: 283 ----SEFQTYNARSEYKKIWNYCDTADTGKDYLCSIVWGET-SDGFADV 326 + TY A S D AD+G+ IV G DG A V Sbjct: 360 DPRLPQPPTYPAASVVG-----IDPADSGEGDETGIVCGALYHDGMAKV 403 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 70.1 bits (170), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 86/410 (20%), Positives = 173/410 (42%), Gaps = 36/410 (8%) Query: 26 PSFYKRDRAYLVTMCEEFQSFLND---DEHDVLVLNLPPRHGKSLTLGKFVE-WVLGNDH 81 P F D +Y ++C+ F+ D +L L PP+ GKS + + + +V+G Sbjct: 27 PRFIHSDFSY--SVCKAVDDFVEDLIAGRRPILDLTAPPQFGKSSLISRCLPGYVIGR-- 82 Query: 82 TKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFD-SKIKDGDAAKNLWSLSD 140 + G LS+ + ++ ++ + + +Y +IF + + +N + D Sbjct: 83 -LGPVLGHCRVALSSYALPRAKANLRDARSIMCEPIYREIFPHASMLTFKGGRNTYDYFD 141 Query: 141 GYNNYL-ATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGG 199 ++ A G+ TGF D+ + DD+ +A++A + TV + H DW+ +RL+ Sbjct: 142 HPYGFIKAQGVGGSLTGFSIDVGLNDDLTADAQDALSQTVQDGHQDWYATVFTTRLQQRS 201 Query: 200 KIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFN--------EQTNEMLCDDVLTL 251 I T W + D+ R ++++ + + +++ A N E L Sbjct: 202 GQINMGTPWSANDIMAR-IKKVHEGKPNYRRLSYPALNYPGEIGYDPDLREGALVPELHS 260 Query: 252 EDYKRKVK-TMGADIASANYQQEPIDVKGRLYSE-----FQTYNARSEYKKIWNYCDTAD 305 E+ R++K +M +A YQQ P+ G ++ + ++ + + ++ D + Sbjct: 261 EEKLREIKASMSEAWWAAMYQQAPMSEMGAIFGKGGVRYYRQGELPTAFAQVIMTVDASF 320 Query: 306 TGKDY--LCSI-VWGETSDGFADVLDIIYTQKPMEYTENAVAN-QLINNRVNASRIERNN 361 GK+ C+I VW +TSD +L + + T A+ + + + IE Sbjct: 321 KGKETSDFCAIGVWAKTSDNRVWLLAMRREKLAFTATAQAIVDLKAAYPQCTRIYIEDAA 380 Query: 362 GGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNS-YWIEQHVRLPN 410 G + + +QG V +KE+R ++ + W V LP+ Sbjct: 381 NGPALIEMLSRHVQGIVGVPAL-----GSKESRWHAVAGVWQSGQVMLPH 425 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 52.8 bits (125), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 5/154 (3%) Query: 55 LVLNLPPRHGKSLTLGKFVEW-VLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADV 113 L++ +PP+ GKS + L + ++I+ +Y + L+ S R+ I + V Sbjct: 80 LLVTMPPQEGKSTMCAVWTPIRALQLNPNRRIILATYGDSLADQHSTTARDLIMRYGTGV 139 Query: 114 D----KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIK 169 + D KI A + W + +A TG AD+ IIDD K Sbjct: 140 TDALTGLAVEDKLGLKINPKQAKVSSWRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFK 199 Query: 170 NAEEANNATVLEKHWDWFVNTMLSRLESGGKIII 203 N EA++ EK +WF + +RL +I+ Sbjct: 200 NMIEADSTRHREKVNEWFASVASTRLSPEASMIL 233 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%) Query: 201 IIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ-----------TNEMLCD 246 ++ + TRWH EDL+G + + L +HIN A +E+ M+ Sbjct: 485 LVSHNTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEEGIPDALGRPEPGIPMISA 544 Query: 247 DVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLYSE--FQTYNARSEYKKIWNYC--D 302 TL ++ + K++G + A YQ P + G L+ F+ RS + + D Sbjct: 545 RGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAERSPERPLATIVAID 604 Query: 303 TADTGKDYLCSIVWG 317 AD+G+ I+ G Sbjct: 605 PADSGEGDETGIIGG 619 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 24/157 (15%) Query: 38 TMCE-EFQSFLNDDEHDVLVLNLPPRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS- 95 T C+ + L D +H +L GKS FV WVL D K++ S ++ + Sbjct: 36 TKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERAD 95 Query: 96 --TVFSKNVRNT------IQQNKADVDKIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLA 147 ++F KN+ + ++ D ++ D+ +K + K++ Sbjct: 96 ANSIFIKNIIDLLPFLAELKPRPGQRDSVISFDVGLAKPDHSPSVKSV------------ 143 Query: 148 TSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHW 184 TG TG ADIII DDV + ++ ++ EK W Sbjct: 144 -GITGQLTGSRADIIIADDV-EVPGNSSTSSAREKLW 178 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 16/146 (10%) Query: 309 DYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGGRSFAR 368 DY V G+T LD +E+T + +A ++ V +E +F Sbjct: 411 DYTAIAVGGKTFQRKLCALDFSVGHYSVEHTLDEIARLVVLWNVKRMYVET----IAFQS 466 Query: 369 SVRDKI-----QGKVACAVEDFFQGNNKEARIYSN--SYWIEQHVRLPNDWRTRFPEYYQ 421 RD+I + K+ CAV D+ NK RI S+ SY+ + +V + +R Sbjct: 467 LYRDRIIKHLAEKKIQCAVLDYKPVGNKHKRIESHLSSYFNQGNVV----FNSRLKNQAI 522 Query: 422 AMTTYQREGK-NKHDDAPDATTGIAE 446 M T+ G+ + DD PDA +AE Sbjct: 523 VMNTFNFFGRASAKDDPPDALAVVAE 548 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 32.7 bits (73), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 23/130 (17%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNVRNTI------QQNKADVD 114 GKS FV W L D KI+ S ++ + ++F KN+ + + + D Sbjct: 64 GKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQRD 123 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 ++ D+ +K + K++ TG TG ADIII DDV + A Sbjct: 124 SVISFDVGPAKPDHSPSVKSV-------------GITGQLTGSRADIIIADDVEIPSNSA 170 Query: 175 NNATVLEKHW 184 EK W Sbjct: 171 TQGA-REKLW 179 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 32.7 bits (73), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 18/111 (16%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYN----EILSTVFSKNVRNT--IQQNKADVDKIV 117 GKS G FV W L ND KKIM S + + +S K + T ++ + D Sbjct: 55 GKSWITGAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDAR 114 Query: 118 YSDI-FDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDV 167 +S I FD A + + TG TG AD++I+DD+ Sbjct: 115 WSRISFDVLCSPHQAP-----------SVKSVGITGQLTGSRADLMILDDI 154 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 32.3 bits (72), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 23/130 (17%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNVRNTI------QQNKADVD 114 GKS FV W L D KI+ S ++ + ++F KN+ + + + D Sbjct: 63 GKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQRD 122 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 ++ D+ +K + K++ TG TG ADIII DDV + A Sbjct: 123 SVISFDVGPAKPDHSPSVKSV-------------GITGQLTGSRADIIIADDVEIPSNSA 169 Query: 175 NNATVLEKHW 184 EK W Sbjct: 170 TQGA-REKLW 178 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 32.3 bits (72), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 26/173 (15%) Query: 56 VLNLPPRHGKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDK 115 ++ LP H KS + + W++ I+ S L+ V+N + + Sbjct: 73 LIMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASS------ 126 Query: 116 IVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGT-------------ATGFGADII 162 VY+ F I + + WS + +++ G TG+ ADII Sbjct: 127 -VYNRYFPEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADII 185 Query: 163 IIDDVI--KNAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDL 213 + DD++ +NA + ++K F + +GG + TR+H D+ Sbjct: 186 VADDLVVPENAYTEDGRESVQKKSSQFTSIR----NAGGFTMACGTRYHPSDI 234 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 31.6 bits (70), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 27/132 (20%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNVRNTI------QQNKADVD 114 GKS FV W L D KI+ S ++ + ++F KN+ + + + D Sbjct: 63 GKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQRD 122 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 ++ D+ +K + K++ TG TG ADIII DDV + Sbjct: 123 SVISFDVGPAKPDHSPSVKSV-------------GITGQLTGSRADIIIADDV---EIPS 166 Query: 175 NNATV--LEKHW 184 N+AT+ EK W Sbjct: 167 NSATMGAREKLW 178 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 31.2 bits (69), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 39/188 (20%) Query: 22 NLIMPS-------FYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSLTLGKFVE 74 N IMP F Y++ + F + +++ + + + GKS+++ V Sbjct: 62 NRIMPPTSPIPGPFNPDTNPYMIPIVSAFA----NPQYNRVTFVMGTQMGKSVSMENLVG 117 Query: 75 WVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFDSKIKDGDAAKN 134 W L +D T + + ++ T + QQ ++ K +D Sbjct: 118 WRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARK------YD----------- 160 Query: 135 LWSLSDGYNNYLATSP-----TGTATGFGAD---IIIIDDV--IKNAEEANNATVLEKHW 184 W+ S Y ++ + G+ T AD ++++D+V I N E + ++E Sbjct: 161 -WNRSTKYTKWVGGTKFRFAWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARG 219 Query: 185 DWFVNTML 192 D +V++ + Sbjct: 220 DAYVDSKI 227 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 31.2 bits (69), Expect = 0.025, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 32/174 (18%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNVRNTIQQNK------ADVD 114 GKS FV W L N+ K M S ++ + ++F K + + + Q K D Sbjct: 53 GKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIFIKRIIDLMPQLKELKPKQGQRD 112 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 ++ D+ +K + K++ TG TG ADI+I DDV E Sbjct: 113 AVISFDVGPAKPDHSPSVKSV-------------GITGQLTGSRADILIADDV----EVP 155 Query: 175 NNAT--VLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGY 226 NN+ V + L+ GG II T + L REL GY Sbjct: 156 NNSATQAARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTL----YRELEGRGY 205 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 29.6 bits (65), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 27/132 (20%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNV------RNTIQQNKADVD 114 GKS FV W L D KI+ S ++ + ++F KN+ + ++ D Sbjct: 63 GKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKPRPGQRD 122 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEA 174 ++ D+ + + K++ TG TG ADIII DDV + Sbjct: 123 SVISFDVGPANPDHSPSVKSV-------------GITGQLTGSRADIIIADDV---EIPS 166 Query: 175 NNATV--LEKHW 184 N+AT+ EK W Sbjct: 167 NSATMGAREKLW 178 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 29.3 bits (64), Expect = 0.10, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 64/173 (36%), Gaps = 30/173 (17%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFD 123 GKS FV W L N+ K M S + + N + +I+ F Sbjct: 62 GKSFITCAFVVWKLWNNPDLKFMIVSAS-----------KERADANSVFIKRIIDLLPFL 110 Query: 124 SKIKDGDAAKNLWSLS--------DGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEAN 175 ++K G ++ SL+ D + + TG TG ADI+I DDV E N Sbjct: 111 HELKPGPGQRD-SSLAFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDV----EVPN 165 Query: 176 NAT--VLEKHWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGY 226 N+ H V + L+ GG II T L REL GY Sbjct: 166 NSATQTARDHLGELVKEFDAILKPGGTIIYLGTPQTEMTL----YRELEGRGY 214 Score = 27.7 bits (60), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 17/117 (14%) Query: 341 NAVANQLINNRVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARI----- 395 A+AN ++VN +E N G + + + + CA+ + KE RI Sbjct: 398 QALANIAKIHKVNEIVVEGNFGDGMYIKLLAPVVTATFPCAITEVKSKGQKELRICDVLE 457 Query: 396 --YSNSYWIEQHVRLPNDWR----------TRFPEYYQAMTTYQREGKNKHDDAPDA 440 + + Q + D+R T + YQ + G HDD DA Sbjct: 458 PVLGSHKLVIQESLIEKDYRTALNADGTTDTSYSLLYQLTRITRERGSLAHDDRLDA 514 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 28.5 bits (62), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 152 GTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSE 211 G G A ++I+DD+IK + + VL DW + ++ G+ ++ TR + Sbjct: 175 GGIEGDRAHLLILDDIIKEKGDGDTEDVL----DWIEAVCVPMVKDHGRTVVIGTRKRPD 230 Query: 212 DL 213 D+ Sbjct: 231 DI 232 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 26.9 bits (58), Expect = 0.49, Method: Compositional matrix adjust. Identities = 73/328 (22%), Positives = 122/328 (37%), Gaps = 61/328 (18%) Query: 181 EKHWDWFVNTMLSRL----ESG-----GKII-------INMTRWHSEDLAGRALRELPKN 224 E++ DW ++L R+ E G GK + + R++ EDL + L + Sbjct: 233 ERYGDWLAPSILERIARLEERGHNPRTGKGLDGTRGWAADPQRYNEEDLIDKELDQ-GAE 291 Query: 225 GYRVKH-INFKAFNEQTNEMLCDDVLTLEDYKRKVKTMGADIASANYQQE------PIDV 277 G+++++ ++ +EQ ++ D+L ++ V A A ++ + PI + Sbjct: 292 GFQLQYMLDTSLADEQRMQLKLRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPI-I 350 Query: 278 KGRLYSEFQTYNARSEYKKIWNYCDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPM- 336 K LY + +++ + D A G D L V G T + V+ I + Sbjct: 351 KPELYLPALMAGGWAPLQQMTMFVDPAGDGGDELSYAV-GGTLGPYIHVVSIGGWKGGFA 409 Query: 337 -EYTENAVANQLINNR--VNASRIERNNGG-------RSFARSVRDKIQGKV---ACAVE 383 E E +A + R V +E+N G R++ RS+ GK +E Sbjct: 410 EENLEKCIA---LAARYGVKVIYVEKNLGAGAVGQLFRNYMRSINPDT-GKPRYEGIGIE 465 Query: 384 DFFQGNNKEARIYSNSYWIEQHVRL-----------------PNDWRTRFPEYYQAMTTY 426 D + KE RI I Q RL P D RT ++Q Sbjct: 466 DRQKSGQKERRIIDTLRPIMQRHRLIFHVSAMDSDYVACQQYPADKRTERSVFHQIHNIT 525 Query: 427 QREGKNKHDDAPDATTGIAETMTTRKAK 454 G DD DA G+ +T K Sbjct: 526 TDRGSLPKDDRIDALEGLVRELTPSLVK 553 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 26.6 bits (57), Expect = 0.58, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 31/177 (17%) Query: 300 YCDTADTGKDYLCSIVWGETSDGFADVLD-IIYTQK----PMEYTENA---VANQLINNR 351 Y D A GK+ ET +L IY K P Y+E+A + + Sbjct: 384 YIDPAGGGKN------GDETGVAIVFLLGTFIYVYKVFGVPGGYSESALSRIVREAKQAE 437 Query: 352 VNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYS-------------N 398 V IE+N G +F ++ + + +++ + KEARI N Sbjct: 438 VKEVFIEKNFGHGAFEAVIKPYFEREWPAELKEDYATGQKEARIIETLEPLMSAHRIIFN 497 Query: 399 SYWIEQHV----RLPNDWRTRFPEYYQAMTTYQREGKNKHDDAPDATTGIAETMTTR 451 + I+Q + P + R + + Q +G +HDD DA G +T++ Sbjct: 498 AEMIKQDIDSVQHYPLEVRMSYSLFAQMSNITLEKGCLRHDDRLDALYGAIRQLTSQ 554 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 26.6 bits (57), Expect = 0.62, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADVDKIVYSDIFD 123 GKS FV WVL D +KIM S ++ + FS + I D++ + + Sbjct: 57 GKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKLI----LDIEWLSH----- 107 Query: 124 SKIKDGDAAKNLWSLSDG------YNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNA 177 + +D D + S G + + TG TG A +++ DDV AN+A Sbjct: 108 LRPRDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMVFDDV---EVPANSA 164 Query: 178 TVLEKH 183 T +++ Sbjct: 165 TDMQRE 170 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 26.6 bits (57), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 22/113 (19%) Query: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILS---TVFSKNV------RNTIQQNKADVD 114 GKS FV W L N+ K M S ++ + ++F K + + ++ D Sbjct: 63 GKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIFIKRIIDLLPFLHELKPRPEQRD 122 Query: 115 KIVYSDIFDSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDV 167 ++ D+ +K + K++ TG TG ADI+I DDV Sbjct: 123 SVISFDVGLAKPDHSPSVKSV-------------GITGQLTGSRADILIADDV 162 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 26.2 bits (56), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 A KD L I G G + + II TQ M Y NAV + +N + S E+ Sbjct: 21 ATKDKDLLNIIAKGGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQ 76 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 32 DRAYLVTMCEEFQSFLNDDEHDVLVLNLP 60 +RA L+T+ +EF S + D +L L P Sbjct: 176 ERAKLITLSKEFTSIVADRNGRILYLGTP 204 >gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3 # Family: family:all:30874 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818304;genbank:gi:29566740;genbank:GeneID :1260058 Length = 214 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 152 GTATGFGADIIIIDDV 167 G+ G GAD++I+DD Sbjct: 103 GSGRGMGADLVILDDA 118 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 24.3 bits (51), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 13/120 (10%) Query: 161 IIIIDDVIKNAEEANNATVLEKHWDWFVNTM--LSRLESGGKIIINMTRWHSEDLAGRAL 218 +++ DD+I + +EA + T WDW + L + K + T + +D RA Sbjct: 214 LLLGDDLITD-KEAKSPTERNNRWDWLEKAIDYLGPPDGSVKYLGVGTVLNKDDPISRAK 272 Query: 219 RELPKNGYRVK-------HINFKAFNEQTNEMLCDDVLTLEDYKRKVKTMGADIASANYQ 271 R + + + H++ A E+ ML DD +E Y + ++ D A ++Q Sbjct: 273 RTVGHLVHHFRAIETFPTHMDLWAHCEEV--MLNDDKPVMEQYAER-GSVAPDSALPSFQ 329 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 23.9 bits (50), Expect = 3.8, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 151 TGTATGFGADIIIIDDVIKNAEEANNATV 179 T A GF AD+I++D+ +EA+ A + Sbjct: 182 TAVARGFSADVIVLDEAFA-LDEASIAAI 209 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 23.9 bits (50), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 294 YKKIWNYCDTADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVN 353 ++ +W A K L I G G + + II TQ M Y NAV + +N + Sbjct: 15 FRPLWK----ATKDKGILNIIAKGGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLA 70 Query: 354 ASRIER 359 S E+ Sbjct: 71 TSVFEQ 76 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 A K+ L + G G + + II TQ M Y NAV + +N + S E+ Sbjct: 21 ATKDKEILNIVAKGGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQ 76 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 308 KDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 K+ L + G G + + II TQ M Y NAV + +N + S E+ Sbjct: 25 KEVLNVVAKGGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQ 76 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 308 KDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 K+ L + G G + + II TQ M Y NAV + +N + S E+ Sbjct: 25 KEVLNVVAKGGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQ 76 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 23.1 bits (48), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 A ++ L + G G + + II TQ M Y NAV + +N + S E+ Sbjct: 21 ATKDREKLNIVAKGGRGSGKSSDISIIITQLIMRYPMNAVVVRKTDNTLATSVFEQ 76 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIER 359 A ++ L + G G + + II TQ M Y NAV + +N + S E+ Sbjct: 20 ATKDREKLNIVAKGGRGSGKSSDISIIITQLIMRYPMNAVVVRKADNTLATSVFEQ 75 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.133 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,565 Number of Sequences: 514 Number of extensions: 11077 Number of successful extensions: 113 Number of sequences better than 100.0: 55 Number of HSP's better than 100.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 72 length of query: 462 length of database: 206,069 effective HSP length: 75 effective length of query: 387 effective length of database: 167,519 effective search space: 64829853 effective search space used: 64829853 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)