BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:3986|NCBI_annot:putative large terminase subunit|genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID:92125 6 (657 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 1359 0.0 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 1353 0.0 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 994 0.0 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 868 0.0 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 860 0.0 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 775 0.0 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 744 0.0 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 522 e-150 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 409 e-116 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 409 e-116 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 387 e-109 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 248 2e-67 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 225 1e-60 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 173 7e-45 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 172 1e-44 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 172 1e-44 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 172 1e-44 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 171 2e-44 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 171 2e-44 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 164 3e-42 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 134 4e-33 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 133 5e-33 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 133 6e-33 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 132 2e-32 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 131 3e-32 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 122 9e-30 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 109 1e-25 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 109 1e-25 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 108 2e-25 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 108 3e-25 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 106 9e-25 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 103 8e-24 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 100 4e-23 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 99 2e-22 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 97 4e-22 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 91 6e-20 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 77 8e-16 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 76 1e-15 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 75 3e-15 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 75 3e-15 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 73 9e-15 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 72 3e-14 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 71 4e-14 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 68 4e-13 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 59 2e-10 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 55 3e-09 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 50 6e-08 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 50 6e-08 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 49 3e-07 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 47 7e-07 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 46 1e-06 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 46 1e-06 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 44 4e-06 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 44 8e-06 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 42 3e-05 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 40 7e-05 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 37 5e-04 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 37 7e-04 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 35 0.002 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 33 0.014 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 32 0.016 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 32 0.017 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 32 0.030 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 32 0.031 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 31 0.036 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 30 0.12 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 27 0.64 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 27 0.94 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 26 1.7 gi|19245|lcl|protein:vir:3850 Length: 237 # NCBI annotation: maj... 25 2.1 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 25 3.6 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 24 5.9 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 24 6.7 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 24 6.8 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 24 6.8 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 1359 bits (3518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 657/657 (100%), Positives = 657/657 (100%) Query: 1 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI 60 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI Sbjct: 1 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI 60 Query: 61 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ 120 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ Sbjct: 61 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ 120 Query: 121 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS 180 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS Sbjct: 121 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS 180 Query: 181 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE 240 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE Sbjct: 181 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE 240 Query: 241 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQK 300 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQK Sbjct: 241 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQK 300 Query: 301 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR 360 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR Sbjct: 301 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR 360 Query: 361 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD 420 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD Sbjct: 361 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD 420 Query: 421 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH 480 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH Sbjct: 421 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH 480 Query: 481 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL 540 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL Sbjct: 481 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL 540 Query: 541 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA 600 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA Sbjct: 541 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA 600 Query: 601 LFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTSQESGLLDLDDEIDDDWGFDEDF 657 LFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTSQESGLLDLDDEIDDDWGFDEDF Sbjct: 601 LFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTSQESGLLDLDDEIDDDWGFDEDF 657 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 1353 bits (3503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/657 (99%), Positives = 656/657 (99%) Query: 1 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI 60 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI Sbjct: 4 MMITELAPTKTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGI 63 Query: 61 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ 120 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ Sbjct: 64 TKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQ 123 Query: 121 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS 180 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS Sbjct: 124 KFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSS 183 Query: 181 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE 240 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE Sbjct: 184 INFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHE 243 Query: 241 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQK 300 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQV+V+NHQFVQISTSYPDPSVPFRKDQK Sbjct: 244 AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENHQFVQISTSYPDPSVPFRKDQK 303 Query: 301 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR 360 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR Sbjct: 304 TLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKR 363 Query: 361 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD 420 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD Sbjct: 364 NSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD 423 Query: 421 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH 480 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH Sbjct: 424 NTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSH 483 Query: 481 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL 540 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL Sbjct: 484 QQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSEL 543 Query: 541 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA 600 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA Sbjct: 544 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDA 603 Query: 601 LFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTSQESGLLDLDDEIDDDWGFDEDF 657 LFQGMYHFEDYGMANDKSW+VEHMTPEQVKEWVTSQESGLLDLDD IDDDWGFDEDF Sbjct: 604 LFQGMYHFEDYGMANDKSWKVEHMTPEQVKEWVTSQESGLLDLDDGIDDDWGFDEDF 660 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/648 (72%), Positives = 560/648 (86%), Gaps = 3/648 (0%) Query: 10 KTMNNLIIEFKVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKL 69 K M I K+DLTQ HD++G YHS+++ +IR +Y+DP T+YAF VLD +GYL +L Sbjct: 2 KMMEWGISSMKIDLTQTHDIIGTYHSLNYEDIREEYQDPATKYAFDVLDEKYTTGYLMQL 61 Query: 70 AAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIG 129 A FRHL+DL+RIG EDFP+ Y K +K L+K + + PNVDT EPT+LM WQKF++ +LIG Sbjct: 62 ACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLLIG 121 Query: 130 WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKL 189 WRN EGGKRF+ AIISV RGQGKTY+LAILM YSF ES GLSNQDFLVSSIN KQT KL Sbjct: 122 WRNKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGLSNQDFLVSSINAKQTGKL 181 Query: 190 FGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHF 249 +GY+K+M+ + I P+K IA +T D S+ D+++M+ NN IR ISHEAGQYDS+HF Sbjct: 182 YGYLKSMINVLRTINPWKNIADKT---DLSLQADKIIMRNHNNVIRPISHEAGQYDSYHF 238 Query: 250 TTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKD 309 TTAIFDEIGEV +REKISKIVSGQV V N QFVQIST+YPDP+VPF +D+K LQ+AME+D Sbjct: 239 TTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQAMEQD 298 Query: 310 WDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTL 369 + R+ADT LCL+W+ D L ET++PETWVKSNPLL+L + D L++GL+DKR++D+L G + Sbjct: 299 FLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAV 358 Query: 370 HDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFP 429 HDFQ KNLNMWL D+DSYLNLADVEKAI+PEF+I+GQRCY+G+DYSM SDNTA+AFV+P Sbjct: 359 HDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIYGQRCYVGVDYSMSSDNTAVAFVYP 418 Query: 430 YLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDE 489 Y+ +EG+ KWHVEQHSF+PFQ AGSI+AKEKQDGINYRELE GFCT+TSHQQGLINDDE Sbjct: 419 YVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLINDDE 478 Query: 490 VYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQK 549 YEWIVNYIE+N+LDV+FFGYDAMG+TKVIQML+NNTG+NLQPIRQRT EL PTKFLQK Sbjct: 479 FYEWIVNYIEENSLDVLFFGYDAMGVTKVIQMLLNNTGFNLQPIRQRTGELAKPTKFLQK 538 Query: 550 LFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFE 609 +FVEG+ISRLDDKIMEK+LLNAVLREDS+GIQVDKRKATLKIDVVDAIIDAL+QGM HFE Sbjct: 539 IFVEGTISRLDDKIMEKALLNAVLREDSVGIQVDKRKATLKIDVVDAIIDALYQGMNHFE 598 Query: 610 DYGMANDKSWQVEHMTPEQVKEWVTSQESGLLDLDDEIDDDWGFDEDF 657 DYGMAND+SWQVEHMTPEQVKEWVTSQESGLLDL+DEIDDDWGFDEDF Sbjct: 599 DYGMANDRSWQVEHMTPEQVKEWVTSQESGLLDLEDEIDDDWGFDEDF 646 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/623 (63%), Positives = 505/623 (81%), Gaps = 3/623 (0%) Query: 20 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 79 K +LT+ HD+ AY DF++I KY+D GT+Y F VL+G +GY+ KLA FRHLRDLQ Sbjct: 2 KTNLTKTHDIDAAYKEFDFTDIAKKYQDDGTKYCFDVLEGRITAGYMIKLACFRHLRDLQ 61 Query: 80 RIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRF 139 R G +DFPY Y E LL+ A + PNVDTGEPT+LM WQKFI+CML GWRN+ GGKRF Sbjct: 62 RQGNDDFPYSYDTDEAARLLRFARICPNVDTGEPTKLMAWQKFILCMLFGWRNANGGKRF 121 Query: 140 TVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKT 199 + AI+SV RGQGKTY++AIL YS+ ESLGLSNQD+LV+SINFKQT+KL GY+K+M+K Sbjct: 122 SRAIVSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQ 181 Query: 200 VIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGE 259 +I+ EPFK++A ET L + +D+V+MK NN +RAIS E+GQYDSFHFTTAIFDEIGE Sbjct: 182 IIQNEPFKSLANETEL---GLHSDQVIMKANNNVLRAISAESGQYDSFHFTTAIFDEIGE 238 Query: 260 VTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLC 319 + R+ +SKIVSGQV V N QF+QIST+YP+PSVPFR+DQ+ +Q+AME D R+ADT LC Sbjct: 239 IETRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLC 298 Query: 320 LVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 379 LVW+QD+L E F+PETW KSNPLL+LE +++ L+KGL+DKR+SDLL G + DFQ KN+N Sbjct: 299 LVWSQDNLEEVFKPETWAKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNC 358 Query: 380 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKW 439 WL D +S+L+L D+E A+IPEF G+R Y+G+D SM SDNTAI FV+PYL ++G KW Sbjct: 359 WLLADSNSFLDLKDIENAVIPEFDRRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKW 418 Query: 440 HVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIE 499 HVEQHSF+P+Q+AGS++AK +QDG+NYR+LE GFCT+TSH QGLIN +EVY W V+Y+E Sbjct: 419 HVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVDYVE 478 Query: 500 DNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRL 559 DNALDV+FFGYDAM I K+I+ L +NT L PIRQRTSELKDPTKFLQ LF+EG+I+RL Sbjct: 479 DNALDVVFFGYDAMMINKIIKALESNTSLPLMPIRQRTSELKDPTKFLQTLFIEGNITRL 538 Query: 560 DDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKSW 619 DD+IM K+L+NAV++ED+IGIQVDK K+T KIDVVDA+IDA + GMY FEDY + N+ +W Sbjct: 539 DDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPTW 598 Query: 620 QVEHMTPEQVKEWVTSQESGLLD 642 +VEHM+ E V EW+ + ESGLL+ Sbjct: 599 KVEHMSQEAVLEWLKNPESGLLE 621 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/623 (62%), Positives = 502/623 (80%), Gaps = 3/623 (0%) Query: 20 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 79 K +L + HD+ AY DFS++ KY+D GT+Y F L+G +GY+ KLA FRHLRDLQ Sbjct: 2 KTNLIKTHDIDAAYKEFDFSDVAKKYQDDGTKYCFDALEGRIVTGYMIKLACFRHLRDLQ 61 Query: 80 RIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRF 139 R G +DFPY Y E LL+ A + PNVDTGEPT+LMPWQKFI+CML GWRN+ GGKRF Sbjct: 62 RQGNDDFPYTYDTAEADKLLRFARICPNVDTGEPTQLMPWQKFILCMLFGWRNANGGKRF 121 Query: 140 TVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKT 199 + AI+SV RGQGKTY++AIL YS+ ES GLSNQD+LV+SI FKQT+KL GY+K+M+K Sbjct: 122 SRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQ 181 Query: 200 VIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGE 259 +I+ EPFK++A ET L + +D+V+MK NN +RAIS E+GQYDSFHFTTAIFDE+GE Sbjct: 182 IIQKEPFKSLANETEL---GLHSDQVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGE 238 Query: 260 VTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLC 319 + R +SKIVSGQV V N QF+QIST+YP+PSVPFR+DQ +Q+AME D +READT LC Sbjct: 239 IETRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLC 298 Query: 320 LVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 379 LVW+QD+L E F+PETW+KSNPLL+LE ++D L+KGL+DKR+SDLL G L DFQ KN+N Sbjct: 299 LVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNC 358 Query: 380 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKW 439 WL D +S+L+L D+E A+I +F I G+R Y+G+D SM SDNTA+ FV+PYL ++G KW Sbjct: 359 WLLADSNSFLDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKW 418 Query: 440 HVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIE 499 H+EQHSF+P+Q+AGSI+AK +QDGINYR+LE GFCT+TSH QGLIN +EVY W ++Y+E Sbjct: 419 HIEQHSFIPWQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVE 478 Query: 500 DNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRL 559 DN+LDV+FFGYDAM + K+I+ L +NT + L PIRQRTSELKDPTKFLQ LF+EG+I+R Sbjct: 479 DNSLDVVFFGYDAMMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRR 538 Query: 560 DDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKSW 619 DD+IM K+L+NAV++ED+IGIQVDK K+T KIDVVDA+IDA + GMY FEDY + N+ +W Sbjct: 539 DDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPTW 598 Query: 620 QVEHMTPEQVKEWVTSQESGLLD 642 +VEHM+ E V EW+ + ESGLL+ Sbjct: 599 KVEHMSQEAVLEWLKNPESGLLE 621 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/625 (59%), Positives = 485/625 (77%), Gaps = 12/625 (1%) Query: 20 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 79 K+DLTQ HDV GA++SID+S+I+ KY DP T YAF+VL+G +GY KLA+FRHL DL+ Sbjct: 2 KIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLR 61 Query: 80 RIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRF 139 R G+ DFPY Y E LL+ A + PNVDTGEPT+LM WQ+F ++ GWR+ + KRF Sbjct: 62 RQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRF 121 Query: 140 TVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKT 199 T I SV+RGQGKTY +AIL+ YSFL ES+GLSNQD+LV+SINFKQT KLFGYV +M++ Sbjct: 122 TRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRK 181 Query: 200 VIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGE 259 +I+IEPFK+ A E L I +D+++MKK NN +RAIS EAGQYDS+HF TAIFDEIGE Sbjct: 182 IIQIEPFKSYANEVNLY---IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGE 238 Query: 260 VTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLC 319 V +RE +SKI+SGQV V NHQF+QISTSYPDP+VPF +DQK + +AME+DW R+AD+ L Sbjct: 239 VKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLG 298 Query: 320 LVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 379 L+W+QD L ET++PETWVKSNPLL+L D++D LLKGL DKR+SDLL G + DFQTKNLN+ Sbjct: 299 LIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNL 358 Query: 380 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKW 439 WL+Q DSYLNL DVE A+ +F+I G +IG DYSM SDNTA++FV+PY D+G K+ Sbjct: 359 WLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KF 414 Query: 440 HVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIE 499 H+EQHSF+PFQ+AGSI+AKEKQDGI YR +Y CT+T+H QG+IN +++Y+W++NY+E Sbjct: 415 HIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY--CTITAHPQGIINPEQIYKWLLNYVE 472 Query: 500 DNALDVIFFGYDAMG---ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSI 556 + L V FFGYD G + + + L NT + + I+QRTS L +PTKFLQ+LFV + Sbjct: 473 QHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKV 532 Query: 557 SRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMAND 616 + +D +M+K+LLNAV++ D IGI VDK KATL+IDVVDAIIDAL+Q MY+F++ N+ Sbjct: 533 TIPNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNN 592 Query: 617 KSWQVEHMTPEQVKEWVTSQESGLL 641 K +++ MT +QV +W + +SGLL Sbjct: 593 KDTEIDRMTEQQVLDWFKNSKSGLL 617 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/624 (56%), Positives = 463/624 (74%), Gaps = 4/624 (0%) Query: 20 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 79 K+DLT+ DV+G+Y SIDFS IR KY+D GTRY F VLDG +GY +LA FRHLRDLQ Sbjct: 3 KIDLTKTKDVIGSYQSIDFSFIRKKYKDAGTRYCFDVLDGKIVAGYNIRLACFRHLRDLQ 62 Query: 80 RIGREDFPYRYSKKEIKNLLKVASVVPNVD-TGEPTELMPWQKFIMCMLIGWRNSEGGKR 138 R G +DFPY YS + LK S+VPNVD + E M WQ FI + W + + R Sbjct: 63 RQGNKDFPYVYSIEAFNRFLKFLSLVPNVDDLSQKLEPMDWQLFIFSQIFAWFDLDNVPR 122 Query: 139 FTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLK 198 F+ IIS++R QGKT I I + +S+L E +G SNQDFLVSS+ F QT KLF YVK+M+ Sbjct: 123 FSNIIISIARSQGKTMIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMA 182 Query: 199 TVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIG 258 +I+ EPFK++A ET L + + E+ N I IS E+G++DS HF A+ DE+G Sbjct: 183 RIIENEPFKSLAEETQL---QLYSREIKSLLDANTINTISFESGKFDSKHFKLAVADEVG 239 Query: 259 EVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSL 318 E+ E ISKI SGQV + +F++ISTSY P VPF ++QK L E ME+D+DR D L Sbjct: 240 ELRTDEGISKITSGQVNTEGSRFIEISTSYQTPDVPFHQEQKKLIEIMERDFDRSGDDQL 299 Query: 319 CLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLN 378 CL+W+QD+L E F+PETW KSNPLL + K+ L+KGL+ +R+ LL G L DFQ KN+N Sbjct: 300 CLIWSQDNLEEVFKPETWAKSNPLLNHPELKEGLMKGLLSERDKKLLMGKLADFQVKNMN 359 Query: 379 MWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPK 438 WL D +S+L+L D+E A+IPEF I G+R Y+G+D SM SDNTAI FV+PYL ++G K Sbjct: 360 CWLLADSNSFLDLTDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQK 419 Query: 439 WHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYI 498 WHVEQHSF+P+Q+AGS++AK +QDG+NYR+LE+ G+CT+TSH QGLIN +EVY W +Y+ Sbjct: 420 WHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYV 479 Query: 499 EDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISR 558 EDNALDV+FFGYDAMG++K+I+ L +NT + L PIRQRTSELKDPTKFLQ LF+EG+I+R Sbjct: 480 EDNALDVVFFGYDAMGVSKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITR 539 Query: 559 LDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKS 618 LDD+IM K+L+NAV++ED+IGIQVDK K+T KIDVVDA+IDA + MY FEDY + N+ + Sbjct: 540 LDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDAMYAFEDYAITNNPT 599 Query: 619 WQVEHMTPEQVKEWVTSQESGLLD 642 W+VEHM+ E V EW+ + ESGLL+ Sbjct: 600 WKVEHMSQEAVLEWLKNPESGLLE 623 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 522 bits (1345), Expect = e-150, Method: Compositional matrix adjust. Identities = 235/367 (64%), Positives = 306/367 (83%) Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 + N QF+QIST+YP+PSVPFR+DQK LQ+AME D +R+ADT LCLVW+QD+L E F+PET Sbjct: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVE 395 W KSNPLL+LE +++ L+KGL+DKR+SDLL G L DFQ KN+N WL D +S+L+L D+E Sbjct: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 Query: 396 KAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSI 455 A+IPEF I G+R Y+G+D SM SDNTAI FV+PY+ ++G KWH+EQHSF+P+Q+AGS+ Sbjct: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 Query: 456 DAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGI 515 +AK +QDG+NYR+LE+ G+CT+TSH QGLIN +EVY W ++Y+EDN LDV+FFGYDAM Sbjct: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 Query: 516 TKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLRE 575 K+I+ L +NT + L PIRQRTSELKDPTKFLQ LF+EG+I+RLDD+IM K+L+NAV++E Sbjct: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 Query: 576 DSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTS 635 D+IGIQVDK K+T KIDVVDAIIDA + GMY FEDY + N+ +W+VEHM+ E V W+ + Sbjct: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 Query: 636 QESGLLD 642 ESGLL+ Sbjct: 361 PESGLLE 367 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 409 bits (1050), Expect = e-116, Method: Compositional matrix adjust. Identities = 227/584 (38%), Positives = 354/584 (60%), Gaps = 13/584 (2%) Query: 37 DFSEIRAKYRDPGTRYAFAVL-DGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEI 95 D+ ++ KY DPGTRYA+ V+ +G +LA RHL DL RIG +DFPY+YS + Sbjct: 23 DYQKLLDKYHDPGTRYAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMV 82 Query: 96 KNLLKVASVVPNVD-TGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTY 154 + + ++PN D T + + WQ FI+ LIGWR + G RFT + IS++R QGKT+ Sbjct: 83 NAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTVDNGTRFTTSNISIARQQGKTW 142 Query: 155 ILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETG 214 + +IL+ + + ++QD LV+S + + +KLF V KT++ + F A E G Sbjct: 143 LASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERG 202 Query: 215 LTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTN--REKISKIVSG 272 + ++ +V+ K N IR + + G +DSFH A++DEIG + E + +I SG Sbjct: 203 VEAQTT---QVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSG 259 Query: 273 QVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFE 332 Q +KN FV+IST+YPD V F+ D+ + A+E D R+AD ++++QD E FE Sbjct: 260 QNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFE 319 Query: 333 PETWVKSNP-LLEL-EDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLN 390 PETW KSNP LLEL + K+D L L RN + +GTL F K+LN+W ++ +SYL+ Sbjct: 320 PETWAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLS 379 Query: 391 LADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQ 450 L +++++II F ++G+ +IG D S +DNT+ F++PY D + K +HV+QHSF+PF Sbjct: 380 LDNIQRSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHD-KHMFHVQQHSFIPFA 438 Query: 451 RAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGY 510 +A +I+AK KQDG++Y +L+ GF +T+ G+IN D+VY+W+V+Y+ + L V F Sbjct: 439 QAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIA 498 Query: 511 DAMGITKVIQMLMN-NTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLL 569 D + + L + + P+ + +L +PTK Q LF+ G+IS L+D ++ L Sbjct: 499 DPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGLN 558 Query: 570 NAVLREDSIG-IQVDKRKATL-KIDVVDAIIDALFQGMYHFEDY 611 NAVL ED G +++D++ T ID DA+I+A Q ++FE+Y Sbjct: 559 NAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENY 602 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 409 bits (1050), Expect = e-116, Method: Compositional matrix adjust. Identities = 232/602 (38%), Positives = 361/602 (59%), Gaps = 17/602 (2%) Query: 22 DLTQDHDVLG---AYHSIDFSEIRAKYRDPGTRYAFAVL-DGITKSGYLTKLAAFRHLRD 77 D T D+ G Y S D+ + KY DPGTRYA+ V+ +G +LA RHL D Sbjct: 5 DFTGVQDIRGYVKPYQS-DYQGLFDKYHDPGTRYAYDVMFTNKYMTGRDVQLACIRHLND 63 Query: 78 LQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-TGEPTELMPWQKFIMCMLIGWRNSEGG 136 L RIG +DFPY+Y+ + + + ++PN D T + + WQ FI+ LIGWR + G Sbjct: 64 LLRIGNDDFPYQYNSDMVNAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTIDNG 123 Query: 137 KRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTM 196 RFT + IS++R QGKT++ +IL+ + + ++QD LV+S + + +KLF V Sbjct: 124 TRFTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQ 183 Query: 197 LKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDE 256 KT++ + F A E G+ ++ +V+ K N IR + + G +DSFH A++DE Sbjct: 184 AKTILSLPDFADDARERGVEAQTT---QVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDE 240 Query: 257 IGEVTN--REKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREA 314 IG + E + +I SGQ +KN FV+IST+YPD V F+ D+ + A+E D R+A Sbjct: 241 IGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDA 300 Query: 315 DTSLCLVWAQDDLSETFEPETWVKSNP-LLELE-DKKDILLKGLIDKRNSDLLQGTLHDF 372 D +++AQD E FEPETW KSNP LLEL+ K+D L K L RN + +GTL F Sbjct: 301 DNVFQVIYAQDSEDEVFEPETWAKSNPNLLELQKSKRDNLQKALNQDRNDNEREGTLETF 360 Query: 373 QTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLD 432 K+LN+W ++ +SYL+L +++++II F ++G+ +IG D S +DNT+ F++PY D Sbjct: 361 VNKSLNLWSRRFQNSYLSLDNIQRSIIDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTD 420 Query: 433 DEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYE 492 + K +HV+QHSF+PF +A +I+AK KQDG++Y +L+ GF +T+ G+IN ++VY+ Sbjct: 421 HD-KHMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTEQVYQ 479 Query: 493 WIVNYIEDNALDVIFFGYDAMGITKVIQMLMN-NTGYNLQPIRQRTSELKDPTKFLQKLF 551 W+V+Y+ + L V F D + + L + + P+ + +L +PTK Q LF Sbjct: 480 WLVDYVNQHRLKVKFIIADPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLF 539 Query: 552 VEGSISRLDDKIMEKSLLNAVLREDSIG-IQVDKRKATL-KIDVVDAIIDALFQGMYHFE 609 + G+I+ L+D ++ L NAVL ED G +++D++ T ID DA+I+A Q ++FE Sbjct: 540 INGNITMLNDPLLIDGLNNAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFE 599 Query: 610 DY 611 +Y Sbjct: 600 NY 601 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 387 bits (994), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/578 (39%), Positives = 343/578 (59%), Gaps = 18/578 (3%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGRED-FPYRYSKKEIKNLLKVASVV 105 DP YA VLDG SG K A RH+ DL+RI ++D F Y Y ++ K +++ ++++ Sbjct: 14 DPALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFSTLL 73 Query: 106 PNVDTGEPTELMPWQKFIMCMLIGWRNSEG-GKRFTVAIISVSRGQGKTYILAILMVYSF 164 +V +GEP E P+QKFI+ + GWRN E G RF IS++R GKT +LA +Y+F Sbjct: 74 KDVTSGEPFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKTQVLATYALYNF 133 Query: 165 LFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDE 224 LF S + N+ VSSI+ T LF Y++ +K FK +A + D S + Sbjct: 134 LFGSPKI-NRQLAVSSIDIAHTHNLFNYMRFNW-IQLKDGVFKKLAKALDINDNSQV--- 188 Query: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDE---IGEVTNREKISKIVSGQVLVKNHQF 281 + +KK + ++ +S + DS H+TT I DE G+ R+ IS + SG V Q Sbjct: 189 MEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQ-KQRDFISSMTSGMVNNPLAQM 247 Query: 282 VQISTSYPDPSVPFRKDQKTLQEAMEK-DWDREADTSLCLVWAQDDLSETFEPETWVKSN 340 IST+ DP+VP +D K + +E DW ++ L L+W QD E + ETW KSN Sbjct: 248 FFISTAGVDPTVPMFEDYKRYSKMLESGDW-SSSEKDLVLIWEQDSEDEAYLIETWPKSN 306 Query: 341 PLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIP 400 PL+E+E + L +G+I +R+S QG + DF KN+N+W ++YL L V+ AI+ Sbjct: 307 PLMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQDAIVD 366 Query: 401 EFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEK 460 EF G+ +IG DYS +D+T++AFVFP+ K+H+ QHS++P +AGSI+AKE+ Sbjct: 367 EFDYFGRDVFIGFDYSQTNDDTSLAFVFPH----SGSKFHLYQHSWIPIAKAGSIEAKEQ 422 Query: 461 QDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQ 520 +D I+YR +++ GF T+T + GLI++DEV+ W++N+IE N L V YD G I+ Sbjct: 423 RDNIDYRAVQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWGTGNFIR 482 Query: 521 MLMN-NTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIG 579 L Y L P+RQ L +PTKFLQ F++ +I+ LDD+ + + L+NAV D+ G Sbjct: 483 RLDEVKEEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVNAVTVSDNNG 542 Query: 580 IQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDK 617 I++DK + KID DAI++AL++G ++F D+ +K Sbjct: 543 IKLDKNVNSQKIDAADAIVNALYEGQFYFNDFTNVEEK 580 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 248 bits (633), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 288/552 (52%), Gaps = 28/552 (5%) Query: 56 VLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTE 115 VLDG + LA RH DL+R D+ + Y +K ++P +G+P Sbjct: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 Query: 116 LMPWQKFIMCMLIGW--RNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSN 173 L P+QKFI+ + GW ++ +RFT IS++R GK+ +++ +++Y FLF + Sbjct: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 Query: 174 QDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVMKKMNN 232 + ++ + KQ +FG VK L+ +++ +P K + I DE+V + Sbjct: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMV--------KITRDELVNLDDGS 176 Query: 233 KIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPS 292 IR+ S + G D + A+ DE + I + SGQVL+ ++ IST+ D + Sbjct: 177 TIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMN 236 Query: 293 VP-FRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDI 351 VP F+++ ++ + + +A+ + QD++ E +P +W+KSNPLL+++ Sbjct: 237 VPMFQQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 Query: 352 LLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKA--IIPEFSIHGQRC 409 + L K G+L+ KN N+W Q DSYL+ D KA + + I GQR Sbjct: 295 ISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDF-DAWKAAELTDKPDIRGQRA 353 Query: 410 YIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYREL 469 +IGID SD AI+++ P EG W ++ ++FV + G ID K K D I+Y Sbjct: 354 WIGIDVGRTSDLFAISWLIP---QEGW--WWLDGYAFVASK--GGIDNKIKTDRIDYLAA 406 Query: 470 EKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQML-MNNTGY 528 E++G ++S + G+I++D VYEW+ ++IE N +DV YD ++ + N+ + Sbjct: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 Query: 529 NLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKAT 588 + +RQ T L PTK + + G I D++IM+ + +NAVL D+ G++++K K Sbjct: 467 PMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYA 526 Query: 589 LKIDVVDAIIDA 600 KID++DA +DA Sbjct: 527 NKIDMIDATLDA 538 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 225 bits (573), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/568 (29%), Positives = 279/568 (49%), Gaps = 20/568 (3%) Query: 37 DFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIK 96 D+S I Y+D YA V+D KS A RHL DL+RI EDF + Y ++ Sbjct: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 Query: 97 NLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNS--EGGKRFTVAIISVSRGQGKTY 154 + + ++P+V TG+P L +QKFI+ L GWR +RF A+ISV+R GKT Sbjct: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 Query: 155 ILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETG 214 ++A +++Y FLF ++ ++ + Q + K L ++ K + Sbjct: 126 LIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA----KDVDVRKA 181 Query: 215 LTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQV 274 I+ DE+ + IRA+S + G D F + DE E + + SGQ Sbjct: 182 T---KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQG 238 Query: 275 LVKNHQFVQISTSYPDPSVPFRK-DQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEP 333 + N + IST+ D +VP + + + ++ + E V QD+ E + Sbjct: 239 QLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKDE 296 Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 W+KSNP+LE+E D L+ L +R L G ++ KN NMW Q +SY++ Sbjct: 297 SNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQS 356 Query: 394 VEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAG 453 E A I + + +R ++G+D +SD AI+ V +DD W+++ SFV + Sbjct: 357 WELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVI-MMDD----YWYLDSFSFVATKYG- 410 Query: 454 SIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAM 513 + AKEK+DG++Y LE+ G+C +T+ + G+I+D+ V E I + N +V +D Sbjct: 411 -LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPY 469 Query: 514 GITKVIQML-MNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAV 572 ++ M+ + + L + Q T L PTK + +G I + ++ ++ NA Sbjct: 470 QFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 Query: 573 LREDSIGIQVDKRKATLKIDVVDAIIDA 600 ++ D+ G+++DK K + KID +DA +D Sbjct: 530 IKTDNNGMRIDKNKNSNKIDPLDAALDG 557 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 173 bits (438), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 171 bits (434), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 171 bits (434), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 Query: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 453 AQSFITTIESMALD---WPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 Query: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 AVL R+ ++++K+ KID + +II A + H Sbjct: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 164 bits (416), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 150/565 (26%), Positives = 269/565 (47%), Gaps = 41/565 (7%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPN---V 108 YA V+DG T + K A R L D++RI +DFPY + +E+ + A + + + Sbjct: 12 YAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHNKGI 71 Query: 109 DTGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 G+P EL +Q FI+ + GW+ E G +RF A I ++R K+ +LA++ Y Sbjct: 72 LAGQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYECF-- 129 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVM 227 L + ++ +Q+S ++ V L V + K ++ + Sbjct: 130 -LSPEQSEVYIAGWGREQSSIVYNEV---LAQVQACDLLKGKYTDS--------YGRIRH 177 Query: 228 KKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIST 286 KK + I+ +S EA + D + + A+ DE E +VSG V +N V I+T Sbjct: 178 KKSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIITT 237 Query: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346 + + + P + + + + ++ E + ++ D + + WVK+NP++ Sbjct: 238 AGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIVATY 297 Query: 347 DKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE-FSIH 405 ++ L+ + + + + + F TKN+N+W+ Q + YL L I E + Sbjct: 298 EEGMNFLRSEL--QTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQIDLD 355 Query: 406 GQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGIN 465 + CY+GID SM D T+++ + P D+G+ ++V HSF+P ++ K + D + Sbjct: 356 VRDCYVGIDLSMRIDLTSVSGIVPM--DDGR--FYVWSHSFIP---EDTLAEKRRTDKVP 408 Query: 466 YRELEKYGFCTVTSHQQGLINDDEVYEWIVNYI----EDNALDVIFFGYDAMGITKVIQM 521 Y K G+ TVT G + D Y++I YI ED ++ YD T Sbjct: 409 YDLWVKQGWITVTP---GAVVD---YQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHE 462 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLRED-SIGI 580 M GY + IRQ L +PTK ++L + G I D+ ++ ++ NAV+++D + I Sbjct: 463 -MEAEGYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENI 521 Query: 581 QVDKRKATLKIDVVDAIIDALFQGM 605 +DK K+T +ID + A+I+A+ + + Sbjct: 522 MLDKDKSTGRIDPIAALINAMVRAI 546 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 134 bits (336), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 44/566 (7%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 109 Y +L+G S + A R +RD + ED P+ + + ++ A +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 110 -TGEPTELMPWQKFIMCMLIGWRNS-EGGKRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 GE EL +Q F+ + G++ G +RF I ++R K+ LAI+ + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTF-- 128 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVM 227 LG Q ++ Q+S+++ VKT + + E + E T N VV+ Sbjct: 129 -LGDEKQRAYIAGWTRDQSSEVYEAVKTGISSS---ELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 228 KKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIST 286 +S EA + D + + I DE E + SG V K I+T Sbjct: 185 --------PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITT 236 Query: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346 + D S P ++ + + + ++ + E D ++ + + + W+K+NP++ Sbjct: 237 AGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 347 DKKDILLKGLIDKRNSDLLQG-----TLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE 401 ++ L+G+ SDL + F TKN+N+W+ + + Y++++ +K + Sbjct: 297 EEG---LEGI----RSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDT 349 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 F G +IG D SM +D T++ +V +DDEG + V QHSF+P R + K Sbjct: 350 FDFSGATLWIGGDLSMTTDLTSVGWV--GMDDEG--DFIVGQHSFMPEAR---LKEKMAI 402 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 D + Y + G+ T+T + +++ V WI N+ +D + F YD + Q Sbjct: 403 DKVRYDLWAEQGYLTLTPGE--MVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQN 458 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR-EDSIGI 580 L N G+ I QR + L PTK ++ E + D ++ +L NAV++ +D I Sbjct: 459 L-ENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENI 517 Query: 581 QVDKRKATLKIDVVDAIIDALFQGMY 606 + K+ + +ID A+++A + MY Sbjct: 518 MISKKISKNRIDPAAAVLNAFARAMY 543 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 133 bits (335), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 44/566 (7%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 109 Y +L+G S + A R +RD + ED P+ + + ++ A +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 110 -TGEPTELMPWQKFIMCMLIGWRNS-EGGKRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 GE EL +Q F+ + G++ G +RF I ++R K+ LAI+ + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTF-- 128 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVM 227 LG Q ++ Q+S+++ VKT + + E + E T N VV+ Sbjct: 129 -LGDEKQRAYIAGWTRDQSSEVYEAVKTGISSS---ELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 228 KKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIST 286 +S EA + D + + I DE E + SG V K I+T Sbjct: 185 --------PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITT 236 Query: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346 + D S P ++ + + + ++ + E D ++ + + + W+K+NP++ Sbjct: 237 AGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 347 DKKDILLKGLIDKRNSDLLQG-----TLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE 401 ++ L+G+ SDL + F TKN+N+W+ + + Y++++ +K + Sbjct: 297 EEG---LEGI----RSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDT 349 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 F G +IG D SM +D T++ +V +DDEG + V QHSF+P R + K Sbjct: 350 FDFSGATLWIGGDLSMTTDLTSVGWV--GMDDEG--DFIVGQHSFMPEAR---LKEKMAI 402 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 D + Y + G+ T+T + +++ V WI N+ +D + F YD + Q Sbjct: 403 DKVRYDLWAEQGYLTLTPGE--MVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQN 458 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR-EDSIGI 580 L N G+ I QR + L PTK ++ E + D ++ +L NAV++ +D I Sbjct: 459 L-ENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENI 517 Query: 581 QVDKRKATLKIDVVDAIIDALFQGMY 606 + K+ + +ID A+++A + MY Sbjct: 518 MISKKISKNRIDPAAAVLNAFSRAMY 543 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 133 bits (335), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 146/581 (25%), Positives = 256/581 (44%), Gaps = 59/581 (10%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 D TRYA VL+G +G KLA RH+ DL+R + Y + ++ + + Sbjct: 3 DRVTRYAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLR 62 Query: 107 NVD---TGEPTELMPWQKFIMCMLIGW-RNSEGGKRFTVAIISVSRGQGKTYILAILMVY 162 D G+ +L +Q FI+ + GW G +RF + + ++R K+ + + + + Sbjct: 63 FTDGEIAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIK 122 Query: 163 SFLFESLGLSNQDFLVSSINFKQT------SKLFGYVKTMLKTVIKIEPFKTIAAETGLT 216 F+ N ++ KQ ++ F ++ L+ + KI+ I Sbjct: 123 LAAFDK--YPNAQVYCTATKMKQARIVWKQARKFIEIEPDLREIFKIKDHDAII------ 174 Query: 217 DRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLV 276 S++N +M A+ + G D F I DE + + + G V Sbjct: 175 -ESLINGGEIM--------ALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQ 225 Query: 277 KNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336 I+T+ + + P K+ + + +E + D + D + ++P W Sbjct: 226 AESLISIITTAGFNLNGPCYKEWEYCKNVLEGIVNN--DEYFIYIAQMDVEDDIWDPNNW 283 Query: 337 VKSNPLLELEDKKDILLKGLID-KRNSDLLQGT----LHDFQTKNLNMWLQQDVDSYL-- 389 +K+NPL+ L KGL + KR ++ + L +F TK+LN+W + D Y+ Sbjct: 284 LKANPLVAK------LPKGLENLKRFAEESKQKGGDDLKNFLTKSLNIWYEFSNDQYIGP 337 Query: 390 NLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPY----LDDEGKPKWHVEQHS 445 ++ V + + + G+ CY G+D S D T++A +FPY + E K+ + HS Sbjct: 338 SVWKVGASKLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHS 397 Query: 446 FVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNY----IEDN 501 F+P +R + D + Y + G TVT G+ D Y++I+ Y IE+ Sbjct: 398 FIPKRRVAE---HIQSDDVPYDVWIENGLLTVTETLGGIKTD---YKYIIKYLRDLIEEF 451 Query: 502 ALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSIS-RLD 560 L +I GYD +Q L G++ I Q L DPT+ + G+I + Sbjct: 452 QLKIIQLGYDPHNADTFLQDL-EELGFDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEE 510 Query: 561 DKIMEKSLLNAVLREDSIG-IQVDKRKATLKIDVVDAIIDA 600 ++++ S++NA L +S G I++DK +ID VDA+IDA Sbjct: 511 NELLSWSVVNAKLVSNSNGEIKIDKNLQEKRIDPVDAVIDA 551 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 132 bits (331), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 139/566 (24%), Positives = 252/566 (44%), Gaps = 44/566 (7%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 109 Y +L+G S + A R +RD + ED P+ + + ++ A +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 110 -TGEPTELMPWQKFIMCMLIGWRNS-EGGKRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 GE EL +Q F+ + G++ G +RF I ++R K+ LAI+ + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTF-- 128 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVM 227 LG Q ++ Q+S+++ VKT + + E + E T N VV+ Sbjct: 129 -LGDEKQRAYIAGWTRDQSSEVYEAVKTGISSS---ELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 228 KKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIST 286 +S EA + D + + I DE E + SG V K I+T Sbjct: 185 --------PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITT 236 Query: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346 + D S P ++ + + + ++ + E D ++ + + + W+K+NP++ Sbjct: 237 AGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 347 DKKDILLKGLIDKRNSDLLQG-----TLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE 401 ++ L+G+ SDL + F TKN+N+W+ + + Y++++ +K + Sbjct: 297 EEG---LEGI----RSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDT 349 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 G +IG D SM +D T++ +V +DDEG + V QHSF+P R + K Sbjct: 350 LDFSGATLWIGGDLSMTTDLTSVGWV--GMDDEG--DFIVGQHSFMPEAR---LKEKMAI 402 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 D + Y + G+ T+T + +++ V WI N+ +D + F YD + Q Sbjct: 403 DKVRYDLWAEQGYLTLTPGE--MVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQN 458 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR-EDSIGI 580 L N G+ I QR + L PTK ++ E + D ++ +L NAV++ +D I Sbjct: 459 L-ENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENI 517 Query: 581 QVDKRKATLKIDVVDAIIDALFQGMY 606 + K+ + +ID A+++A + MY Sbjct: 518 MISKKISKNRIDPAAAVLNAFARAMY 543 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 131 bits (329), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 139/566 (24%), Positives = 252/566 (44%), Gaps = 44/566 (7%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 109 Y +L+G S + A R +RD + ED P+ + + ++ A +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 110 -TGEPTELMPWQKFIMCMLIGWRNS-EGGKRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 GE EL +Q F+ + G++ G +RF I ++R K+ LAI+ + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTF-- 128 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVM 227 LG Q ++ Q+S+++ VKT + + E + E T N VV+ Sbjct: 129 -LGDEKQRAYIAGWTRDQSSEVYEAVKTGISSS---ELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 228 KKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIST 286 +S EA + D + + I DE E + SG V K I+T Sbjct: 185 --------PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITT 236 Query: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346 + D S P ++ + + + ++ + E D ++ + + + W+K+NP++ Sbjct: 237 AGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 347 DKKDILLKGLIDKRNSDLLQG-----TLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE 401 ++ L+G+ SDL + F TKN+N+W+ + + Y++++ +K + Sbjct: 297 EEG---LEGI----RSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDT 349 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 G +IG D SM +D T++ +V +DDEG + V QHSF+P R + K Sbjct: 350 XDFSGATLWIGGDLSMTTDLTSVGWV--GMDDEG--DFIVGQHSFMPEAR---LKEKMAI 402 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 D + Y + G+ T+T + +++ V WI N+ +D + F YD + Q Sbjct: 403 DKVRYDLWAEQGYLTLTPGE--MVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQN 458 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR-EDSIGI 580 L N G+ I QR + L PTK ++ E + D ++ +L NAV++ +D I Sbjct: 459 L-ENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENI 517 Query: 581 QVDKRKATLKIDVVDAIIDALFQGMY 606 + K+ + +ID A+++A + MY Sbjct: 518 MISKKISKNRIDPAAAVLNAFXRAMY 543 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 122 bits (307), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 146/580 (25%), Positives = 262/580 (45%), Gaps = 56/580 (9%) Query: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPN---V 108 Y+ ++LDG + K A R L DL+R+ +DF Y + ++E + ++K + V Sbjct: 12 YSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGV 71 Query: 109 DTGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFE 167 G+P L W KF++C + W++ + +RF A I V+R K+ + A Sbjct: 72 LEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEA---------- 121 Query: 168 SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVV- 226 G++ + N + L G + K V E ++ +A++ L R +V+ Sbjct: 122 --GMAGYEIGAKGYNAAEVYTL-GVERDQAKIVF--EEWELMASKP-LKKRFKFTQKVIK 175 Query: 227 MKKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIS 285 KK N+ I+ +S +AG+ D + A+ DE N + + SG + V I+ Sbjct: 176 HKKSNSFIKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIIT 235 Query: 286 TS---YPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 342 T+ Y + + + + L D E + ++ +D + F+ + W+K+NP+ Sbjct: 236 TAGEDYEETACYY----EYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPV 291 Query: 343 LELEDKKDILLKGLIDKR-NSDLLQGTLHD-----FQTKNLNMWLQQDVDSYLNL----A 392 L ++ G+ R N++L + T ++ F TKN N+++ Y+++ A Sbjct: 292 LCTYEE------GIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKA 345 Query: 393 DVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 E + +F G CYIG+D S D T+IAF FPYL DEG K+ + SF+P A Sbjct: 346 CKENITLEKF--RGHDCYIGMDLSKSGDLTSIAFEFPYL-DEGIRKYALFGKSFIP---A 399 Query: 453 GSIDAKEKQDGINYR--ELEKYGFCTVTSHQQGLINDD-EVYEWIVNYIEDNALDVIFFG 509 + K K D + Y ++ G+ T +G I D + I + +++ L+VI Sbjct: 400 EVVKEKMKTDNVPYNIWSSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVS 459 Query: 510 YDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLL 569 YD G ++ L YN Q ++L + T + L I ++ +M + Sbjct: 460 YDPHGAAMLVSEL-ERRDYNCVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQ 518 Query: 570 NAVLREDSIG-IQVDKRKATLKIDVVDAIIDALFQGMYHF 608 NA +S G I++ K+ +ID + + I A + M ++ Sbjct: 519 NAEKDTNSFGEIKISKKSRFKRIDPLASCIFAHNRAMTYW 558 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 143/560 (25%), Positives = 239/560 (42%), Gaps = 48/560 (8%) Query: 50 TRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD 109 T YA V G K+ K RHLR L+ G+ F + + I+ + K P+ Sbjct: 16 TWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCK--PSKG 73 Query: 110 TGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 + L PWQ FI+ L GW + E +RF A+I + R GKT I V ++ Sbjct: 74 SKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKT--TTISGVANYAVSQ 131 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVM 227 G + + + + KQ LF K M+K K++ F+T L DE+ Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRT------------LRDEIHY 179 Query: 228 KKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS 287 +KI + ++ + D + IFDEI E + + IS I + + + I+T+ Sbjct: 180 DATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTA 239 Query: 288 YPDPSVPF----RKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLL 343 P + TL + +E + + + + DD + + W+K+NP L Sbjct: 240 GYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 344 ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK--AIIPE 401 + D + + + + +G DF TK N++ D S+++ ++K I+ Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 + G+ C IG D S D TA F D GK V HS++P + + K Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFAL--DNGKVA--VLSHSWIPKHKVEYSNEK--- 403 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 I YRE E+ G TV + I+ +V WI+ E ++ I YD K+ Q Sbjct: 404 --IPYREWEEDGLLTV--QDKPYIDYQDVLNWIIKMNEHYVVEKI--TYDRANAFKLNQE 457 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQ 581 L N G+ + RQ L K L+++F++G I ++ +M+ + N L+ D G Sbjct: 458 L-KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNW 516 Query: 582 VDKRKATL-KIDVVDAIIDA 600 + +++ KID A ++ Sbjct: 517 LPSKQSRYRKIDGFAAFLNT 536 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 143/560 (25%), Positives = 239/560 (42%), Gaps = 48/560 (8%) Query: 50 TRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD 109 T YA V G K+ K RHLR L+ G+ F + + I+ + K P+ Sbjct: 16 TWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCK--PSKG 73 Query: 110 TGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 + L PWQ FI+ L GW + E +RF A+I + R GKT I V ++ Sbjct: 74 SKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKT--TTISGVANYAVSQ 131 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVM 227 G + + + + KQ LF K M+K K++ F+T L DE+ Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRT------------LRDEIHY 179 Query: 228 KKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS 287 +KI + ++ + D + IFDEI E + + IS I + + + I+T+ Sbjct: 180 DATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTA 239 Query: 288 YPDPSVPF----RKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLL 343 P + TL + +E + + + + DD + + W+K+NP L Sbjct: 240 GYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 344 ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK--AIIPE 401 + D + + + + +G DF TK N++ D S+++ ++K I+ Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 + G+ C IG D S D TA F D GK V HS++P + + K Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFAL--DNGKVA--VLSHSWIPKHKVEYSNEK--- 403 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 I YRE E+ G TV + I+ +V WI+ E ++ I YD K+ Q Sbjct: 404 --IPYREWEEDGLLTV--QDKPYIDYQDVLNWIIKMNEHYVVEKI--TYDRANAFKLNQE 457 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQ 581 L N G+ + RQ L K L+++F++G I ++ +M+ + N L+ D G Sbjct: 458 L-KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNW 516 Query: 582 VDKRKATL-KIDVVDAIIDA 600 + +++ KID A ++ Sbjct: 517 LPSKQSRYRKIDGFAAFLNT 536 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 108 bits (271), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 142/560 (25%), Positives = 239/560 (42%), Gaps = 48/560 (8%) Query: 50 TRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD 109 T YA V G K+ + RHLR L+ G+ F + + I+ + K P+ Sbjct: 16 TWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCK--PSKG 73 Query: 110 TGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 + L PWQ FI+ L GW + E +RF A+I + R GKT I V ++ Sbjct: 74 SKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKT--TTISGVANYAVSQ 131 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVM 227 G + + + + KQ LF K M+K K++ F+T L DE+ Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRT------------LRDEIHY 179 Query: 228 KKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS 287 +KI + ++ + D + IFDEI E + + IS I + + + I+T+ Sbjct: 180 DATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTA 239 Query: 288 YPDPSVPF----RKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLL 343 P + TL + +E + + + + DD + + W+K+NP L Sbjct: 240 GYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 344 ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK--AIIPE 401 + D + + + + +G DF TK N++ D S+++ ++K I+ Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQ 461 + G+ C IG D S D TA F D GK V HS++P + + K Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFAL--DNGKVA--VLSHSWIPKHKVEYSNEK--- 403 Query: 462 DGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQM 521 I YRE E+ G TV + I+ +V WI+ E ++ I YD K+ Q Sbjct: 404 --IPYREWEEDGLLTV--QDKPYIDYQDVLNWIIKMNEHYVVEKI--TYDRANAFKLNQE 457 Query: 522 LMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQ 581 L N G+ + RQ L K L+++F++G I ++ +M+ + N L+ D G Sbjct: 458 L-KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNW 516 Query: 582 VDKRKATL-KIDVVDAIIDA 600 + +++ KID A ++ Sbjct: 517 LPSKQSRYRKIDGFAAFLNT 536 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 108 bits (269), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 144/558 (25%), Positives = 238/558 (42%), Gaps = 44/558 (7%) Query: 50 TRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD 109 T YA V G K+ K RHLR L+ G+ F + + I+ + K P+ Sbjct: 16 TWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCK--PSKG 73 Query: 110 TGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 + L PWQ FI+ L GW + E +RF A+I + R GKT I V ++ Sbjct: 74 SKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKT--TTISGVANYAVSQ 131 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKI-EPFKTIAAETGLTDRSILNDEVVM 227 G + + + + KQ LF K M+K K+ E F+ L DE+ Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRP------------LRDEIHY 179 Query: 228 KKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS 287 +KI + ++ + D + IFDEI E + + IS I + + + I+T+ Sbjct: 180 DATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTA 239 Query: 288 YPDPSVPFRKDQKTLQEAMEKDWDR--EADTSLCLVWAQDDLSETFEPETWVKSNPLLEL 345 P + EA D+ E + + + + DD + + W+K+NP L + Sbjct: 240 GYQLDGPL----VDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGV 295 Query: 346 EDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK--AIIPEFS 403 D + + + + +G DF TK N++ D S+++ ++K II Sbjct: 296 SIDLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDE 352 Query: 404 IHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDG 463 + G+ C IG D S D TA F D GK V HS++P + + K Sbjct: 353 LEGRPCTIGYDLSETEDFTAACATFAL--DNGKVA--VLTHSWIPKHKVEYSNEK----- 403 Query: 464 INYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQMLM 523 I YRE E+ G T+ + I+ +V WI+ E ++ I YD K+ Q L Sbjct: 404 IPYREWEEDGLLTI--QDKPYIDYQDVLNWIIKMNEHYVVEKI--TYDRANAFKLNQEL- 458 Query: 524 NNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVD 583 N G+ + RQ L K L+++F++G I ++ +M+ + N L+ D G + Sbjct: 459 KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLP 518 Query: 584 KRKATL-KIDVVDAIIDA 600 +++ KID A ++ Sbjct: 519 SKQSRYRKIDGFAAFLNT 536 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 106 bits (264), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 148/562 (26%), Positives = 239/562 (42%), Gaps = 52/562 (9%) Query: 50 TRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD 109 T YA V G K+ K RHLR L+ G+ F + + I+ + K P+ Sbjct: 16 TWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCK--PSKG 73 Query: 110 TGEPTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 + L PWQ FI+ L GW + E +RF A+I + R GKT I V ++ Sbjct: 74 SKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKT--TTISGVANYAVSQ 131 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKI-EPFKTIAAETGLTDRSILNDEVVM 227 G + + + + KQ LF K M+K K+ E F+ L DE+ Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRP------------LRDEIHY 179 Query: 228 KKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS 287 +KI + ++ + D + IFDEI E + + IS I + + + I+T+ Sbjct: 180 DATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTA 239 Query: 288 YPDPSVPFRKDQKTLQEAMEKDWDR--EADTSLCLVWAQDDLSETFEPETWVKSNPLL-- 343 P + EA DR E + + + + DD + + W+K+NP L Sbjct: 240 GYQLDGPL----VNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGV 295 Query: 344 --ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKA--II 399 +L++ K+ K KR D DF TK N++ D S+++ ++K II Sbjct: 296 SIDLDEMKEEWEKA---KRTPD----ERGDFITKRFNIFANNDEMSFIDYPTLQKNNDII 348 Query: 400 PEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKE 459 + G+ C IG D S D TA F D GK V HS++P + + K Sbjct: 349 SLDELEGRPCTIGYDLSETEDFTAACATFAL--DNGKVA--VLTHSWIPKHKVEYSNEK- 403 Query: 460 KQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVI 519 I Y E E+ G T+ + I+ +V WI+ E ++ I YD K+ Sbjct: 404 ----IPYIEWEEDGLLTIQDNP--YIDYQDVLNWIIKMNEHYVVEKI--TYDRANAFKLN 455 Query: 520 QMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIG 579 Q L N G+ + RQ L K L+++F++G I ++ +M+ + N L+ D G Sbjct: 456 QEL-KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 Query: 580 IQVDKRKATL-KIDVVDAIIDA 600 + +++ KID A ++ Sbjct: 515 NWLPSKQSRYRKIDGFAAFLNT 536 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 103 bits (256), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 128/580 (22%), Positives = 235/580 (40%), Gaps = 47/580 (8%) Query: 51 RYAFAVLDGITKSGYLTKLAAFRHLRDLQR-IGREDFPYRYSKKEIKNLLKVASVVPNVD 109 +YA +L G +G KLA RHL DL+ + +++PYR+ + + ++P+ Sbjct: 12 QYARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSS 71 Query: 110 ---TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVYSFL 165 G+ + PWQ FI + GW +G K RF I V R GK++ A + +Y F Sbjct: 72 GDLKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYMFC 131 Query: 166 FESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEV 225 + G + + + Q K+F M K + + RS N V Sbjct: 132 AD--GENAAEVYCGATKMAQAKKVFTPASQMAKLLPDL--------------RSRFNVSV 175 Query: 226 VMKKMNNK----IRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQF 281 +K+ + + G DS + AI DE E S + +G Sbjct: 176 WAEKLTREDGSVFAPVVGNPGDGDS--PSCAIIDEYHEHPTDILYSTMTTGMGARSQPLT 233 Query: 282 VQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNP 341 + I+T+ D P +++ ++K E +++ D L +P +K+NP Sbjct: 234 LIITTAGKDIESPCYDKDNEVKQCLDKMLPNE--RLFGMIYELDALDNWQDPCNLIKANP 291 Query: 342 LLELEDKKDILLKGLIDKRN-SDLLQGTLHDFQTKNLNMWLQQDVDSYLNL---ADVEKA 397 L + + + L++K + + + +D +TK+LNMW+ ++ N+ A E Sbjct: 292 NLGVS----VFYEDLVEKLHLAKTVPRMTNDIKTKHLNMWVSGKT-AFFNMDHWAKAEDK 346 Query: 398 IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSF-VPFQRAGSID 456 + + G+ ++G+D + D A VF + EGK ++ F VP SID Sbjct: 347 NLKLSNFKGEESHLGLDLAAKLDLNAGVPVFTR-EIEGKRHYYCVGSKFWVPEDTVHSID 405 Query: 457 AKEKQDGINYRE---LEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAM 513 K + Y++ ++ G + + E+ +++ E + + + D Sbjct: 406 PKIAKTAKRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPT 465 Query: 514 GITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIME---KSLLN 570 G T + L +N G+ IRQ + + P K L+ G + I+ ++L Sbjct: 466 GATALSHELADN-GFEPINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLG 524 Query: 571 AVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFED 610 + ++ K KID A++ A+ + M H +D Sbjct: 525 TFVPGSDDRVRPTKGDKQSKIDGATALLMAIGRAMLHGQD 564 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 100 bits (250), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 135/600 (22%), Positives = 239/600 (39%), Gaps = 69/600 (11%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 + +YA V+ G + LA RHL DL+ ++++P+++ K + + + K ++P Sbjct: 4 NAANQYARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLP 63 Query: 107 NVDTGE------PTELMPWQKFIMCMLIGW-RNSEGGKRFTVAIISVSRGQGKTYILAIL 159 + GE P L PWQ F +C++ GW R G +RF A + R GK+ + A + Sbjct: 64 HT-KGEWAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGV 122 Query: 160 MVYSFLF-ESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 218 +Y F + G + + KQ ++F + M + + EP R Sbjct: 123 GLYMFACDDEFG---AEVYSGATTEKQAWEVFRPARLMAQ---RTEPL-----------R 165 Query: 219 SILNDEVVMKKMNNKIRAISHE---AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 EV + M+ E D + A+ DE E + +G Sbjct: 166 EAFGIEVHAQSMSRPEDGARFEPLIGDPGDGASPSCALIDEYHEHQTDALYQTMQTGMGA 225 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 + I+T+ + P ++ + E +E D +++ DD + +P Sbjct: 226 RRQPLIFGITTAGYNIEGPCYDKRREVIEMLEGIVPN--DELFGIIYTIDDGDDWTDPAV 283 Query: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVE 395 K+NP + + D LL N+ G F+TK+LN+W+ D++ NL + + Sbjct: 284 LRKANPNMGISVYSDYLLSQQRAAINNPRKVGV---FKTKHLNIWVAAK-DAFFNLVNWQ 339 Query: 396 KAIIPEFSI---HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 K ++ G C + D + D A+ +F D + V FVP+ Sbjct: 340 KCEDRSLTLERFEGHTCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTI 399 Query: 453 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWI-----VNYIEDNALDVIF 507 S D + + Y++ + GF TVT + I+ E+ E +N +E++ + Sbjct: 400 YSADVTDSRTAERYQKWVEGGFITVTDGAE--IDYREILESAKEANRLNAVEESPI---- 453 Query: 508 FGYDAMGITKVIQMLMNNTGYNLQPIR--QRTSELKDPTKFLQKLFVEGSISRLDDKIME 565 D G T + L + NL PI Q + + DP K L+ G + +M Sbjct: 454 ---DPHGATNLSHHLADE---NLNPITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMT 507 Query: 566 KSLLNAVLRE---DSIGIQVDKRKATLKIDVVDAIIDALFQGMY---------HFEDYGM 613 + N + + D ++ K+ KID A+I A+ + M H E YG+ Sbjct: 508 WCISNVIGKHIPGDDDVVRPIKQGNENKIDGAVALIMAIGRCMLFEKEDTLSDHIESYGI 567 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 190/424 (44%), Gaps = 33/424 (7%) Query: 70 AAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD---TGEPTELMPWQKFIMCM 126 A R +D+ R+ +D PY + + + + + + +V+ G+P EL +Q FI Sbjct: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 Query: 127 LIGWRNSE-GGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQ 185 + G+ E G +RF A I ++R K+ LA++ Y +F + ++ + +Q Sbjct: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE-IFPTQ--EKHRVFIAGWSREQ 135 Query: 186 TSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQY- 244 + +++ + L ++ T A N V K N+ I+ +S EA + Sbjct: 136 SDEVYQAILEQLHHAPILKGKYTSA-----------NGRVKKYKTNSIIQPLSREARKLG 184 Query: 245 DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQE 304 D + + I DE E + SG V ++ I+T+ + P K+ + + Sbjct: 185 DGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSK 244 Query: 305 AMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDL 364 ++ D D E D ++ D + + W+K+NP++ + L+ + + + Sbjct: 245 ILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL--KVALE 302 Query: 365 LQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAI--IPEFSIHGQRCYIGIDYSMMSDNT 422 + + F TKN+N W+ Q + Y+ + IP+ + G Y+G+D SM +D T Sbjct: 303 VPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPD--LQGLPVYLGLDLSMTTDLT 360 Query: 423 AIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQ 482 ++ +V +G ++V QHSF+P RA + K D + Y + GF T TS ++ Sbjct: 361 SVGYV---AVQDG--FFYVGQHSFMPDARA---NEKMATDKVPYDLWREMGFITYTSGEE 412 Query: 483 GLIN 486 +IN Sbjct: 413 LIIN 416 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 97.4 bits (241), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 125/569 (21%), Positives = 233/569 (40%), Gaps = 39/569 (6%) Query: 49 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 108 +YA ++DG + +LA RH DL++ +++PY++ + + K ++P+ Sbjct: 10 ANKYARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHS 69 Query: 109 D---TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVYSF 164 G+ +L PWQ FI C + GW + K RF A I V+R GK++ A + +Y+F Sbjct: 70 SGELAGQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYTF 129 Query: 165 LFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDE 224 + G ++ + + Q K+F + M + + I+ TD D Sbjct: 130 CAD--GENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISV---WTDSLTRPDG 184 Query: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQI 284 V M K G DS H AI DE E + G + I Sbjct: 185 SVFAPMAGK-------PGDGDSPH--CAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLII 235 Query: 285 STSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE 344 +T+ P K ++EA+E E +++ D + +P+ +K+NP L Sbjct: 236 TTAGSSLESPCYDKDKEVKEAIEGITCNE--RLFGMIYELDVGDDWTDPKNLIKANPNLN 293 Query: 345 LEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSI 404 + K L++ L + + ++ F+TK LN+W+ ++ N+ + A + Sbjct: 294 VSVKYSDLVELL---EVAKQVPRKVNAFKTKRLNIWVSGK-SAFYNMEQWKAAEDKNLKL 349 Query: 405 H---GQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSF-VPFQRAGSIDAKEK 460 C +G+D + D A +F + EGK ++ + F VP + D K Sbjct: 350 EDFANDTCNVGLDLAKKLDMNAGIRLFTR-EIEGKRHYYCIKPKFWVPEDTIHTTDPKLL 408 Query: 461 QDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQ 520 + Y++ + G T + + E+ I++ +N +D I D G T ++ Sbjct: 409 KTADRYQKFYEMGALEATDGAEA--DYREILASILDMQGENRIDEI--DIDPAGAT-ALR 463 Query: 521 MLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR----ED 576 + + G+ + IRQ + + K L+ G + I+ + N + + D Sbjct: 464 HQLEDYGFTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSD 523 Query: 577 SIGIQVDKRKATLKIDVVDAIIDALFQGM 605 + ++ K KID A+ +A+ + M Sbjct: 524 DL-VRPTKGDNQSKIDGATALFNAMTRAM 551 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 90.5 bits (223), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 112/503 (22%), Positives = 219/503 (43%), Gaps = 35/503 (6%) Query: 110 TGEPTELMPWQKFIMCMLIGW-RNSEGGKRFTV---AIISVSRGQGKTYILAILMVYSFL 165 G+ EL W+ F+ + GW +E GK V + + V + GKT I A ++Y+ Sbjct: 70 AGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTIIAAGALLYAMY 129 Query: 166 FE-SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPF----KTIAAETGLTDRSI 220 E LG D ++ +++Q + + + + EP + G ++ Sbjct: 130 GELELG---ADCYCAASDYEQAQNA---AEPIAQAIENSEPLARHTQIYKGVNGTVSGAM 183 Query: 221 LNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQ 280 + NK + ++ + + + DE+ N + + S Q+ + Sbjct: 184 YRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQISREQPM 243 Query: 281 FVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSN 340 + IST+ S + K + +E D D D+ +W + + + + W N Sbjct: 244 MLNISTAGKGASSVGMRVYKYAKLVLENDDD---DSLFVAIWEPNKNYDWEDRKVWKMVN 300 Query: 341 PLLELEDKKDILLKGL-IDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAII 399 P + + + ++ L I+ + + + +F +K+LN+++ D+Y V+ ++ Sbjct: 301 PNIGVS----VTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFVN-GADNYFEHDQVQHVLV 355 Query: 400 PEFS-IHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAK 458 + + G+ CY+G+D S +D T ++ FP DDEG+ V+Q F+P + +ID K Sbjct: 356 KDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNE---NIDFK 412 Query: 459 EKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKV 518 EK+D + Y ++ + GF T + +I+ D++ E+IV ++ DV YD K+ Sbjct: 413 EKEDNVPYTDMVERGFATFCDGK--MIDQDQIMEYIVECMD--LYDVQQINYDPAMSQKL 468 Query: 519 IQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSI 578 I+ L N G + Q + + + L E + D+ + LN V+ + Sbjct: 469 IEKL-ENLGLECIAVNQYPNVMNAMLDDSEILIYEKRLIT-DNPLFVYCALNVVVVTNIN 526 Query: 579 GIQV-DKRKATLKIDVVDAIIDA 600 G++ KR++ KID A + A Sbjct: 527 GMKAPSKRQSKKKIDGFVAFLCA 549 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 76.6 bits (187), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 134/598 (22%), Positives = 240/598 (40%), Gaps = 64/598 (10%) Query: 47 DPGTRYAFAVLDG-ITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVV 105 + +YA V+ G IT Y+ + A RH+ D+ + F YR+ K + K ++ Sbjct: 10 NAANQYARNVVRGKITACQYVIQ-ACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLL 68 Query: 106 PNVDTGEPT------ELMPWQKFIMCMLIGW-RNSEGGKRFTVAIISVSRGQGKTYILAI 158 P+ GE L PWQ FI+C GW + +RF + R GK+ I A Sbjct: 69 PHTK-GEWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAG 127 Query: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLK-TVIKIEPFKTIAAETGLTD 217 + +Y F ++ + + KQ ++F + M K T + +E F E ++ Sbjct: 128 VALYCFTCDNE--FGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAF---GIEVNASN 182 Query: 218 RSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVK 277 + D + + G S H AI DE E + +++G + Sbjct: 183 LNRPEDGA-------RFEPLIGNPGDGASPH--CAIVDEYHEHPTDALYTTMLTGMGARR 233 Query: 278 NHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWV 337 I+T+ + P ++ + E + + +++ D+ + +P+ Sbjct: 234 QPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPN--NELFGVIYTVDEGDDWTDPKVLE 291 Query: 338 KSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLA---DV 394 K+NP + + +D LL N+ G F+TK+LN+W+ ++ NL + Sbjct: 292 KANPNIGVSVYRDFLLSQQQRAINNARHAGV---FKTKHLNVWVAART-AFFNLVSWQNC 347 Query: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 E + GQ C + D + D ++A +F D + V +VP+ S Sbjct: 348 EDKTLTLELFEGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYS 407 Query: 455 IDAKE-KQDGINYRELEKYGFCTVTSHQQGLINDDEV-YEWIVNYIE-DNALDVIFFG-Y 510 ++ E ++ +++ + GF TVT + EV Y +I+ + N L+ + Sbjct: 408 VEKNEDRRTAERFQKWVEMGFLTVT-------DGAEVDYRYILEEAKAANKLNPVSESPI 460 Query: 511 DAMGITKVIQMLMNNTGYNLQPIR--QRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSL 568 D G T + L + NL P+ Q + + DP K L+ G + IM + Sbjct: 461 DPFGATGLSHDLADE---NLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCI 517 Query: 569 LNAVLR----EDSIGIQVDKRKATLKIDVVDAIIDALFQGMY---------HFEDYGM 613 N V + D + ++ K +A KID A+I A+ + M H E YG+ Sbjct: 518 GNVVGKTIPGNDDV-VKPIKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGI 574 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 128/587 (21%), Positives = 230/587 (39%), Gaps = 67/587 (11%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 + +YA V+ G + A RHL DL + F YR+ K + + K ++P Sbjct: 10 NAANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLP 69 Query: 107 NVDTGE------PTELMPWQKFIMCMLIGWRNSEGG-KRFTVAIISVSRGQGKTYILAIL 159 + GE P L PWQ F++C GW N +RF + R GK+ I A + Sbjct: 70 HT-KGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGV 128 Query: 160 MVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLK-TVIKIEPFKTIAAETGLTDR 218 +Y F ++ + + KQ ++F + M K T + E F Sbjct: 129 ALYCFACDN--EFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGI---------- 176 Query: 219 SILNDEVVMKKMNN-----KIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQ 273 EV MN + + G S H A+ DE E + +++G Sbjct: 177 -----EVNASNMNRPEDGARFEPLIGNPGDGSSPH--CAVVDEYHEHATDALYTTMLTGM 229 Query: 274 VLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEP 333 + I+T+ + P ++ + E + + D +++ D+ + +P Sbjct: 230 GARRQPLMWAITTAGYNIEGPCYDKRREVIEML--NGSVPNDELFGIIYTVDEGDDWTDP 287 Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 + K+NP + + ++ LL +N+ L F+TK+LN+W+ +Y NL Sbjct: 288 QVLEKANPNIGVSVYREFLLSQQQRAKNNARLANV---FKTKHLNIWVSAR-SAYFNLVS 343 Query: 394 VEKAIIPEFSI---HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQ 450 + ++ GQ C + D + D ++A ++ D + V +VP+ Sbjct: 344 WQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYD 403 Query: 451 RAGSIDAKE-KQDGINYRELEKYGFCTVTSHQQGLINDDEV-YEWIVNYIEDNALDVIF- 507 S++ E ++ +++ + G TVT + EV Y +I+ E A + I Sbjct: 404 TVYSVEKNEDRRTAERFQKWVEMGVLTVT-------DGAEVDYRYILE--EAKAANKISP 454 Query: 508 ---FGYDAMGITKVIQMLMNNTGYNLQPIR--QRTSELKDPTKFLQKLFVEGSISRLDDK 562 D G T + L + +L P+ Q + + DP K L+ G + Sbjct: 455 VSESPIDPFGATGLSHDLADE---DLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNP 511 Query: 563 IMEKSLLNAVLR----EDSIGIQVDKRKATLKIDVVDAIIDALFQGM 605 IM + N V + D + ++ K +A KID A+I + + M Sbjct: 512 IMTWCIGNVVGKNMPGNDDL-VKPVKEQAENKIDGAVALIMTIGRAM 557 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 127/577 (22%), Positives = 218/577 (37%), Gaps = 54/577 (9%) Query: 49 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 108 G ++A V+ G + +LA RHL DL ++DF +++ + + L + ++P+ Sbjct: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT 70 Query: 109 D-----TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVY 162 + L PWQKF + GW N GK RF + V R GK+ I A + + Sbjct: 71 KGEWAFRKQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIG 130 Query: 163 SFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILN 222 F+ + + + KQ ++F + M +K P +AA+ Sbjct: 131 MFVLDD--EFGAEVYAGATTEKQAWEVFRPARLM----VKRSPELIVAADI--------- 175 Query: 223 DEVVMKKMNNKIRAISHE---AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNH 279 EV MN E D + +I DE E + +++G + Sbjct: 176 -EVNASNMNKPEDGSRFEPLIGNPGDGASPSCSIVDEYHEHDSAALYETMLTGMGARRQP 234 Query: 280 QFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKS 339 I+T+ + P ++ + E +E D +W D+ + +P K+ Sbjct: 235 LMFIITTAGANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKA 292 Query: 340 NPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD---VEK 396 NP + + +D L S T F+TK+LN+W Y NL D E Sbjct: 293 NPNIGISVYQDYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKA-GYFNLEDWKSCED 348 Query: 397 AIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSID 456 + GQ C + +D + D ++A +F + D + + V +VP + + + Sbjct: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRNTE 408 Query: 457 AKEKQDGINYRELEKYGFCTVTSHQQGLINDDEV---YEWIVNYIED--NALDVIFFGYD 511 N R E+Y +Q L+ D Y I+ +D V D Sbjct: 409 --------NRRMAERY---QAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 G T + L + G I Q + + DP K L+ G + IM + N Sbjct: 458 PHGATNLSHQL-EDEGLTPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNV 516 Query: 572 V---LREDSIGIQVDKRKATLKIDVVDAIIDALFQGM 605 + L + ++ K+ KID A+I A+ + M Sbjct: 517 IGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAIGRAM 553 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 128/577 (22%), Positives = 217/577 (37%), Gaps = 54/577 (9%) Query: 49 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 108 G ++A V+ G + +LA RHL DL ++DF +++ + + L + ++P+ Sbjct: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT 70 Query: 109 D-----TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVY 162 G+ L PWQKF + GW N GK RF + V R GK+ A + + Sbjct: 71 KGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIG 130 Query: 163 SFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILN 222 F+ + + + KQ ++F + M +K P L D + + Sbjct: 131 MFVLDD--EFGAEVYAGATTEKQAWEVFRPAQLM----VKRSPM--------LIDSAGI- 175 Query: 223 DEVVMKKMNNKIRAISHE---AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNH 279 EV MN E D + AI DE E + +++G + Sbjct: 176 -EVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQP 234 Query: 280 QFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKS 339 I+T+ + P ++ + E +E D +W D+ + +P K+ Sbjct: 235 LMFIITTAGANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKA 292 Query: 340 NPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD---VEK 396 NP + + +D L S T F+TK+LN+W Y NL D E Sbjct: 293 NPNIGISVYQDYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKA-GYFNLEDWKSCED 348 Query: 397 AIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSID 456 + GQ C + +D + D ++A +F + D + + V +VP + + Sbjct: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTE 408 Query: 457 AKEKQDGINYRELEKYGFCTVTSHQQGLINDDEV---YEWIVNYIED--NALDVIFFGYD 511 N R E+Y +Q L+ D Y I+ +D V D Sbjct: 409 --------NRRMAERY---QAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 G T + L + G I Q + + DP K L+ G + IM + N Sbjct: 458 PHGATNLSHQLADE-GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNV 516 Query: 572 V---LREDSIGIQVDKRKATLKIDVVDAIIDALFQGM 605 + L + ++ K+ KID A+I A+ + M Sbjct: 517 IGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 73.2 bits (178), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 24/391 (6%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 D +YA V+ G + LA R L DL R +D+PY + + + +K ++P Sbjct: 5 DIARQYASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMP 64 Query: 107 NVD---TGEPTELM--PWQKFIMCMLIGW-RNSEGGKRFTVAIISVSRGQGKTYILAILM 160 + + ++L+ PWQ FI + GW + G +RF A + R GK+ LA Sbjct: 65 HTKGKWSASKSKLVFEPWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARG 124 Query: 161 VYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSI 220 +Y LF + G S + + KQ ++F M K+E + ++ Sbjct: 125 IY--LFAADGESGAEVYSGATTEKQAFEVFRPAWMMAH---KLENLRNRFGIELSGNQKN 179 Query: 221 LNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQ 280 VM+ M +K + G S H A+ DE E + + +G + Sbjct: 180 PGPMFVMEDM-SKFETVIGNPGDGASPH--AALVDEYHEHDTDALVDTMQTGMGAREQPL 236 Query: 281 FVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSN 340 I+T+ + P + ++ + +E E T +++ D+ +P + +K+N Sbjct: 237 LSIITTAGSNLGGPCHEKRRDVIRILEGQTIDE--TIFGIIYTIDEDDPWDDPASLIKAN 294 Query: 341 PLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIP 400 P + D LL L + S Q F+TK+LN W+ ++N+ ++ Sbjct: 295 PNYGVSVFPDFLLAQLQQAKRSASKQNA---FRTKHLNQWVGART-VWMNMLAWQRQ-KR 349 Query: 401 EFSI---HGQRCYIGIDYSMMSDNTAIAFVF 428 +F+I G RC++ +D + D A+ +F Sbjct: 350 DFTIADMAGCRCWMALDLASKKDVAALVMLF 380 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 71.6 bits (174), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 109/533 (20%), Positives = 197/533 (36%), Gaps = 101/533 (18%) Query: 110 TGEPTELMPWQKFIMC--------MLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMV 161 G+P L+PWQ+ ++ WR ++ ++ V+R GK+ I A +M+ Sbjct: 46 AGQPFRLLPWQRTLLIDAYELTQDTFGRWR-----RKHRTVVVCVARKNGKSTIAAAIML 100 Query: 162 YSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSIL 221 Y L G + + + ++ + Q +F K M+ K+ + + Sbjct: 101 Y-HLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLAAVCNVQRD--------- 150 Query: 222 NDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQF 281 V++ +N R +S +AG+ + DE + + + G F Sbjct: 151 ----VIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMF 206 Query: 282 VQISTSYPDPSVPFRKDQKTLQEAMEKDWDREAD--TSLCLVWAQDDLSET---FEPETW 336 + IST+ PDP PF L E E+ EAD T W L ET +PE W Sbjct: 207 LIISTAGPDPDGPF----AALCEQGERVNSGEADDPTLFYRSWGP-KLGETVDHLDPEVW 261 Query: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396 + NP ++ + D S + L F + + WL + L AD + Sbjct: 262 ARCNPSYDILNPDDFKAAAQRSTEASFRIY-RLSQF-VRGASTWLPHGLWDSL-AADDDD 318 Query: 397 AIIPEFSIHGQRCYIGIDYSMMSDNTAI---------AFVFPYLDDEGKPKWHVEQHSFV 447 + P G G D S D+TA+ FV + + + H V Sbjct: 319 PLEP-----GDEVVCGFDGSWKGDSTALVACRVRDLRVFVLGHWEAPAD-----DIHWRV 368 Query: 448 PFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIF 507 P D +E + L+ Y + L+ D +E ++ +E V Sbjct: 369 PMA-----DVREAL----HSALDTY-------RVRNLVADPYRWEETLDNLEAEGFPVEA 412 Query: 508 FGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKS 567 F +++ + + T+ + +G +S + + + Sbjct: 413 FPTNSL------------------------ARMVPATQAVYDACRDGRLSHDGNPALARH 448 Query: 568 LLNAVLREDSIGIQVDKR--KATLKIDVVDAIIDALFQGMYHFEDYGMANDKS 618 + NAVL+ED+ G ++ K + KID+ A++ A++ + ED G+ D + Sbjct: 449 IGNAVLKEDARGARITKEFGASRRKIDLAVAMVLAVWGAVMWREDNGLTTDTA 501 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 109/532 (20%), Positives = 201/532 (37%), Gaps = 102/532 (19%) Query: 110 TGEPTELMPWQKFIMC--------MLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMV 161 G+P L+PWQ+ ++ WR ++ ++ V+R GK+ I A +M+ Sbjct: 43 AGQPFRLLPWQRELLIDAYVLTQDTFGRWR-----RKHRTVVVCVARKNGKSTIAAAIML 97 Query: 162 YSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSIL 221 Y L G + + + ++ + Q +F K M+ K+ + + Sbjct: 98 Y-HLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLAAVCDVQRD--------- 147 Query: 222 NDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQF 281 V++ +N R +S +AG+ + DE + + + G F Sbjct: 148 ----VIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMF 203 Query: 282 VQISTSYPDPSVPFRKDQKTLQEAMEKDWDREAD--TSLCLVWAQDDLSET---FEPETW 336 + IST+ PDP PF L E E+ EAD T W L ET +P+ W Sbjct: 204 LIISTAGPDPDGPF----AALCEQGERVNSGEADDPTLFYRSWGP-KLGETVDHLDPDVW 258 Query: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396 NP ++ + D S + L F + + WL + + +LA + Sbjct: 259 RACNPSYDILNPDDFKAAAQRSTEASFRIY-RLSQF-VRGASTWLPHGL--WDSLAADDD 314 Query: 397 AIIPEFSIHGQRCYIGIDYSMMSDNTAI---------AFVFPYLDDEGKPKWHVEQHSFV 447 + P G +G D S D+TA+ FV + + + H V Sbjct: 315 PLEP-----GDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAPAD-----DAHWRV 364 Query: 448 PFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIF 507 P D +E+ + L+ Y + L+ D +E ++ +E + V Sbjct: 365 PMA-----DVREEL----HTALDVY-------RVRNLVADPYRWEETLDNLEADGFPVEA 408 Query: 508 FGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKS 567 F +++ + + T+ + +G +S + + + Sbjct: 409 FPTNSL------------------------ARMVPATQAVYDACRDGRLSHDGNPALGRH 444 Query: 568 LLNAVLREDSIGIQVDKRKAT--LKIDVVDAIIDALFQGMYHFEDYGMANDK 617 + NAVL+ED+ G ++ K A+ KID+ A++ A+ + ED G+ +DK Sbjct: 445 IGNAVLKEDARGARITKEHASSRRKIDLAVAMVLAVHGAVMWREDNGIVSDK 496 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 113/443 (25%), Positives = 184/443 (41%), Gaps = 48/443 (10%) Query: 146 VSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKI-E 204 + R GKT I V ++ G + + + + KQ LF K M+K K+ E Sbjct: 1 MGRKNGKT--TTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRE 58 Query: 205 PFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNRE 264 F+ L DE+ +KI + ++ + D + IFDEI E + + Sbjct: 59 NFRP------------LRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYK 106 Query: 265 KISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDR--EADTSLCLVW 322 IS I + + + I+T+ P + EA DR E + + + Sbjct: 107 LISVIKNSRAARLQPLLIYITTAGYQLDGPL----VNMVEAGRDTLDRIIEDERTFYYLA 162 Query: 323 AQDDLSETFEPETWVKSNPLL----ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLN 378 + DD + + W+K+NP L +L + K+ K KR D DF TK N Sbjct: 163 SLDDDDDINDSSNWIKANPNLGVSIDLAEMKEEWEKA---KRTPD----ERGDFITKRFN 215 Query: 379 MWLQQDVDSYLNLADVEKA--IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGK 436 ++ D S+++ ++K II + G+ C IG D S D TA F D GK Sbjct: 216 IFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFAL--DNGK 273 Query: 437 PKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVN 496 V HS++P + + K I Y E E+ G T+ + I+ +V WI+ Sbjct: 274 VA--VLTHSWIPKHKVEYSNEK-----IPYIEWEEDGLLTIQDNP--YIDYQDVLNWIIK 324 Query: 497 YIEDNALDVIFFGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSI 556 E ++ I YD K+ Q L N G+ + RQ L K L+++F++G I Sbjct: 325 MNEHYVVEKI--TYDRANAFKLNQEL-KNYGFETEETRQGALTLSPALKDLKEMFLDGKI 381 Query: 557 SRLDDKIMEKSLLNAVLREDSIG 579 ++ +M+ + N L+ D G Sbjct: 382 IFNNNPLMKWYINNVQLKLDRNG 404 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/403 (21%), Positives = 157/403 (38%), Gaps = 41/403 (10%) Query: 49 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 108 ++A V+ G + LA RHL DL F Y++ + + L++ ++P+ Sbjct: 12 ANQFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHT 71 Query: 109 D-----TGEPTELMPWQKFIMCMLIGW-RNSEGGKRFTVAIISVSRGQGKTYILAILMVY 162 + L PWQ F + GW R G +RF + V R GK+ I A + + Sbjct: 72 KGEWAYKRQLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGIA 131 Query: 163 SFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLK-TVIKIEPFKTIAAETGLTDRSIL 221 +F + + + +Q ++F + M+K + + IE L Sbjct: 132 --MFTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEH---------------L 174 Query: 222 NDEVVMKKMN-----NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLV 276 EV + +N ++ I G D + AI DE E + +++G Sbjct: 175 GIEVNAQALNRPEDGSRFEPIIGNPG--DGASPSCAIEDEYHEHDTNAQYETMLTGMGAR 232 Query: 277 KNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336 + I+T+ + P ++ + E +E D +W D+ + +P Sbjct: 233 RQPLMFVITTAGANIEGPCYDKRRQVIEMLEG--TVPDDELFGWIWTIDEDDDWTDPRVL 290 Query: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396 K+NP + + ++ L S T F+TK+LN+W Y NL D + Sbjct: 291 AKANPNIGISVYQEYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKA-GYFNLEDWKA 346 Query: 397 AIIPEFSI---HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGK 436 S+ GQ C + +D + D ++A +F + D +G+ Sbjct: 347 CEDRSLSLEQFEGQDCVLALDMARKLDLNSMARLF-WRDIDGR 388 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 98/409 (23%), Positives = 170/409 (41%), Gaps = 46/409 (11%) Query: 113 PTELMPWQKFIMCMLIG-WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGL 171 P L PWQKF+ L G + +RF A+I + R QGKT A L + + Sbjct: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 Query: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILND-EVVMKKM 230 S + +S+ KQT + FG++ +E + + + D + + V Sbjct: 139 SKTYIVANSL--KQTQESFGFL------TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDG 190 Query: 231 NNKIRAISHEAGQYDSFHFTTAIFDEIG--EVTNREKISKIVSGQVLVKNHQFVQISTSY 288 I AI+++ + DS + I DEI + +K + + Q +N + IST+ Sbjct: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 Query: 289 PDPSVPFRKDQKTLQEAMEKDWDREADTS----LCLVWAQD-----------DLSETFEP 333 + + TL++ + +A S LC QD +++ +P Sbjct: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTA-EQDEKGNIINPVTREITTIDDP 309 Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLH-DFQTKNLNMWLQQDVDSYLNLA 392 E P L++ + L LI + LL+ L +F K+LN+ +D+Y ++ Sbjct: 310 EVLASVTPSLDVT----VTLDDLITEARQALLEPQLKAEFLNKSLNI-FTNSMDAYFDID 364 Query: 393 DVEKA------IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSF 446 + + + E S Y G D S M D TA A Y + +GK V H+F Sbjct: 365 EFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNY-EYKGKSIDIVITHAF 423 Query: 447 VPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIV 495 P RA K ++D I E ++ G+ T+++ + L D++ +W + Sbjct: 424 FPKSRAIE---KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFM 467 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 121/589 (20%), Positives = 236/589 (40%), Gaps = 51/589 (8%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 D YA +++DG + AA R +DL E+ Y ++ +E + ++++ Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDL-----ENPKYDFNPREAEFVIQIIEKTF 62 Query: 107 NVDTGE----------PTELMPWQKFIMCMLIG-WRNSEGGKRFTVAIISVSRGQGKTYI 155 D GE P L PWQKFI+ L+G + +RF A I + R GKT + Sbjct: 63 VHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRL 122 Query: 156 LAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGL 215 +A L L E S ++S +Q+ + F ++ L+ + + + F+ + Sbjct: 123 IAALAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQEN 180 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 + +D + IRA++ + DS + I DE+ ++ + I Sbjct: 181 SISGEFSDGSIY------IRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKA 234 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSET--FEP 333 N + I+T+ D + + + ++ +++ EA +D+ E P Sbjct: 235 YTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNP 294 Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 K+NP + + D ++ + +N + DF K+LN++ + +Y N+ + Sbjct: 295 IEHEKANPNYGVTIRPDDIMNDALQAQNDPQQR---KDFLAKSLNIYTSP-MKAYFNIDE 350 Query: 394 VEKA------IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFV 447 +K+ I + + G + G D S + D TA A Y + H++ Sbjct: 351 FKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVD-----IAITHAWF 405 Query: 448 PFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIF 507 P A K ++D I G+ T+T+ +N +V +W + + Sbjct: 406 PIVAATR---KAEEDNIPLFGWRDDGWLTMTN--TPTVNFSDVVKWFET-MRAKGFKIKQ 459 Query: 508 FGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKS 567 G+D + M M +N+ Q + + + ++K +G L + E Sbjct: 460 VGFD-RKFGREFFMAMKQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYC 518 Query: 568 LLN--AVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMA 614 + N A+ + D + IQ +K + +ID+ DA + A + + + E A Sbjct: 519 VQNVHAIEKTDDM-IQFEKIEDKHRIDIFDATVFAAIRMLENMEKAATA 566 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 121/589 (20%), Positives = 236/589 (40%), Gaps = 51/589 (8%) Query: 47 DPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVP 106 D YA +++DG + AA R +DL E+ Y ++ +E + ++++ Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDL-----ENPKYDFNPREAEFVIQIIEKTF 62 Query: 107 NVDTGE----------PTELMPWQKFIMCMLIG-WRNSEGGKRFTVAIISVSRGQGKTYI 155 D GE P L PWQKFI+ L+G + +RF A I + R GKT + Sbjct: 63 VHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRL 122 Query: 156 LAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGL 215 +A L L E S ++S +Q+ + F ++ L+ + + + F+ + Sbjct: 123 IAALAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQEN 180 Query: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 + +D + IRA++ + DS + I DE+ ++ + I Sbjct: 181 SISGEFSDGSIY------IRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKA 234 Query: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSET--FEP 333 N + I+T+ D + + + ++ +++ EA +D+ E P Sbjct: 235 YTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNP 294 Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 K+NP + + D ++ + +N + DF K+LN++ + +Y N+ + Sbjct: 295 IEHEKANPNYGVTIRPDDIMNDALQAQNDPQQR---KDFLAKSLNIYTSP-MKAYFNIDE 350 Query: 394 VEKA------IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFV 447 +K+ I + + G + G D S + D TA A Y + H++ Sbjct: 351 FKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVD-----IAITHAWF 405 Query: 448 PFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIF 507 P A K ++D I G+ T+T+ +N +V +W + + Sbjct: 406 PIVAATR---KAEEDNIPLFGWRDDGWLTMTN--TPTVNFSDVVKWFET-MRAKGFKIKQ 459 Query: 508 FGYDAMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKS 567 G+D + M M +N+ Q + + + ++K +G L + E Sbjct: 460 VGFD-RKFGREFFMAMKQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYC 518 Query: 568 LLN--AVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMA 614 + N A+ + D + IQ +K + +ID+ DA + A + + + E A Sbjct: 519 VQNVHAIEKTDDM-IQFEKIEDKHRIDIFDATVFAAIRMLENMEKAATA 566 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 48.5 bits (114), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 109/501 (21%), Positives = 188/501 (37%), Gaps = 56/501 (11%) Query: 119 WQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLV 178 W+KFI + + + + I++ RG GK ++ L Y F+ G++N D V Sbjct: 66 WEKFIAPFIFLYFKEDDELFYEEFFITLGRGGGKNGFISTLSNY-FISPLHGINNYDVSV 124 Query: 179 SSINFKQTSKLFGYVKTMLKTVIKIE-PFKTIAAETGLTDRSILNDEVVMKKMNNKIRAI 237 + + Q F V + K+E F A +++ K N+ + Sbjct: 125 VANSEDQAKVSFKEVFNTIDGNPKLEGSFDAWKA------------QIIGKATNSVFKFQ 172 Query: 238 SHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRK 297 + A D I+DE E +R+ I G V N + I T+ + + K Sbjct: 173 TSNAKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGFVRAGFYDK 232 Query: 298 DQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE--LEDKKDILLKG 355 ++ + + + D + DD +E W K+NP E L + LL Sbjct: 233 LEERSKAILSG--ENLNDRMFPFICKLDDPAEVKNEAMWEKANPAFEKPLSPRSKRLLNK 290 Query: 356 LIDKRNSDLLQGT---LHDFQTKNLNMW---LQQDVDSYLNLADVEKAIIPEFSIHGQRC 409 + ++ + L F TK +N+ L++ V + ++ + +PE + + C Sbjct: 291 V--RKQYEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILATNRE-MPE--LQNRAC 345 Query: 410 YIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYREL 469 DY+ + D A+ +F DD + + HSF R G +D + I +E Sbjct: 346 IGAFDYASVKDFAAVGLLFRVGDD-----YIWKTHSFA---RKGYLDIANLKPPI--KEW 395 Query: 470 EKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIF---FGYDAMGITKVIQMLMNNT 526 EK G T+ + I+ V W V E + + + F D M + L Sbjct: 396 EKQGLLTIVD--EPTIDPRHVVNWFVEMRETHGIQKVIGDNFRMDLM------RPLFEAE 447 Query: 527 GYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRK 586 G+ L+ IR + ++ LF I D+ +M N ++ I+ D K Sbjct: 448 GFELEIIRNPRAAHSLLAPRIETLFANHRIVFGDNPLMRWYTNNVAVK-----IKPDGNK 502 Query: 587 ATLKIDVVDAIIDALFQGMYH 607 LK D D FQ H Sbjct: 503 EYLKKDEHRRKTDG-FQAFVH 522 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 47.0 bits (110), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 117/522 (22%), Positives = 207/522 (39%), Gaps = 72/522 (13%) Query: 113 PTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESL-GL 171 PT +P+Q+FI+ + + FT I + RG GK +++ + FL L G+ Sbjct: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLIS--AISDFLSTPLHGV 117 Query: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMN 231 + + + Q F ++T+L + + KT A ++ I+N + Sbjct: 118 KEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIIN-----RATK 172 Query: 232 NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDP 291 + IR + D IFDEI E ++ G KN + IST D Sbjct: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYIST---DG 229 Query: 292 SVPFRKDQKTLQEAMEKDW-----DREADTSLCLVWAQ-DDLSETFEPETWVKSNPLLE- 344 V ++ +AM+ + ++ L + + DD E + +TW K+NP+L Sbjct: 230 FV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHK 284 Query: 345 -LEDKKDILLKGLIDKRNS-DLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEF 402 L + LL + ++ N + +F TK +N L D+EK I P Sbjct: 285 PLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN----------LPEVDLEKVIAPWK 334 Query: 403 SI----------HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 I Q C G+D++ + D ++ +F DD + HSFV R Sbjct: 335 EILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD-----YIWLGHSFV---RQ 386 Query: 453 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALD-VIFFGYD 511 G +D + + I +E EK G T+ +I + + +W + E L+ VI Y Sbjct: 387 GFLDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAREKYGLEKVIADNYR 442 Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 T +++ + G L+ +R + + +F + ++ D+ +M + N Sbjct: 443 ----TDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLM-RWFTNN 497 Query: 572 VLREDSIGIQVDKRKATLKIDVVDAIID---ALFQGMYHFED 610 V ++ I+ D K +K D V D A +Y +D Sbjct: 498 V----AVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADD 535 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 113/515 (21%), Positives = 204/515 (39%), Gaps = 66/515 (12%) Query: 113 PTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESL-GL 171 PT +P+Q+FI+ + + FT I + RG GK +++ + FL L G+ Sbjct: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLIS--AISDFLSTPLHGV 117 Query: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMN 231 + + + Q F ++T+L + + KT A ++ I+N + Sbjct: 118 KEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIIN-----RATK 172 Query: 232 NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDP 291 + IR + D IFDEI E ++ G KN + IST D Sbjct: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYIST---DG 229 Query: 292 SVPFRKDQKTLQEAMEKDW-----DREADTSLCLVWAQ-DDLSETFEPETWVKSNPLLE- 344 V ++ +AM+ + ++ L + + DD E + +TW K+NP+L Sbjct: 230 FV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHK 284 Query: 345 -LEDKKDILLKGLIDKRNS-DLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEF 402 L + LL + ++ N + +F TK +N L D+EK I P Sbjct: 285 PLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN----------LPEVDLEKVIAPWK 334 Query: 403 SI----------HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 I Q C G+D++ + D ++ +F DD + HSFV R Sbjct: 335 EILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD-----YIWLGHSFV---RQ 386 Query: 453 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALD-VIFFGYD 511 G +D + + I +E EK G T+ +I + + +W + E L+ VI Y Sbjct: 387 GFLDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAREKYGLEKVIADNYR 442 Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 T +++ + G L+ +R + + +F + ++ D+ +M N Sbjct: 443 ----TDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNV 498 Query: 572 VLREDSIGIQ--VDKRKATLKIDVVDAIIDALFQG 604 ++ G + + K + K D A + AL++ Sbjct: 499 AVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 113/515 (21%), Positives = 204/515 (39%), Gaps = 66/515 (12%) Query: 113 PTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESL-GL 171 PT +P+Q+FI+ + + FT I + RG GK +++ + FL L G+ Sbjct: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLIS--AISDFLSTPLHGV 117 Query: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMN 231 + + + Q F ++T+L + + KT A ++ I+N + Sbjct: 118 KEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIIN-----RATK 172 Query: 232 NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDP 291 + IR + D IFDEI E ++ G KN + IST D Sbjct: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYIST---DG 229 Query: 292 SVPFRKDQKTLQEAMEKDW-----DREADTSLCLVWAQ-DDLSETFEPETWVKSNPLLE- 344 V ++ +AM+ + ++ L + + DD E + +TW K+NP+L Sbjct: 230 FV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHK 284 Query: 345 -LEDKKDILLKGLIDKRNS-DLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEF 402 L + LL + ++ N + +F TK +N L D+EK I P Sbjct: 285 PLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN----------LPEVDLEKVIAPWK 334 Query: 403 SI----------HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 I Q C G+D++ + D ++ +F DD + HSFV R Sbjct: 335 EILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD-----YIWLGHSFV---RQ 386 Query: 453 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALD-VIFFGYD 511 G +D + + I +E EK G T+ +I + + +W + E L+ VI Y Sbjct: 387 GFLDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAREKYGLEKVIADNYR 442 Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 T +++ + G L+ +R + + +F + ++ D+ +M N Sbjct: 443 ----TDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNV 498 Query: 572 VLREDSIGIQ--VDKRKATLKIDVVDAIIDALFQG 604 ++ G + + K + K D A + AL++ Sbjct: 499 AVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRA 533 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 106/513 (20%), Positives = 197/513 (38%), Gaps = 64/513 (12%) Query: 115 ELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQ 174 E+ +QKFI C + + F+ IS++RG GK ++ L + FL G+ Sbjct: 62 EIQDFQKFITCFVFLYEADTLTPYFSEFFISMARGGGKNGYISTLGAF-FLTPLHGIPKY 120 Query: 175 DFLVSSINFKQTSKLFGYVKTMLKT----VIKIEPFKTIAAETGLTDRSILNDEVVMKKM 230 + V + + KQ F + M+++ V K +P L + + + V Sbjct: 121 NMSVVANSEKQAQVSFQEIYDMIESNDLYVRKDKPNNPFNISKVLIEGISMKAQFVFDTS 180 Query: 231 NNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPD 290 N K + + E FDEI I+ SG V + + I T Sbjct: 181 NEKTKDGAREG---------CVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGT---- 227 Query: 291 PSVPFRKDQKTLQEAMEKDWDREA---------DTSLCLVWAQDDLSETFEPETWVKSNP 341 D + ++K +R A D + DD E + + W K+NP Sbjct: 228 -------DGHVREGFLDKLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANP 280 Query: 342 LLE--LEDKKDILLKGLIDKRNSDLLQGTLH-DFQTKNLNMWLQQDVDSYLNLADVEKAI 398 + E + D L + + + S + +F TK +N+ + DS +A + + Sbjct: 281 MFEAPMNDYGRQLFQEVKQQYLSLKFNPSGRTEFMTKRMNL---PETDSQSVVAPWDDIL 337 Query: 399 -----IPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAG 453 +P S+ C G+DY+ + D A+ +F +DDE K H F R Sbjct: 338 ATNRDMP--SLDNHECIGGLDYASLKDFAAVGLLFK-VDDEYIWKTH-------SFARKA 387 Query: 454 SIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAM 513 +D + + I+ E + G T+ + I+ + +W + + L + M Sbjct: 388 FLDEYQLKPPIH--EWAEKGLLTIVD--EPTISPKHIIDWFLEAQKHYGLKKVIADNFRM 443 Query: 514 GITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVL 573 + + + N+ Y + + L P ++ +F + +I D+ +M N + Sbjct: 444 DLLRPL-FEENDIDYEVVKNTRAIQSLLAPR--VEDMFAQQNIIFGDNPLMRWYTGNVAV 500 Query: 574 REDSIGIQVDKRKATL--KIDVVDAIIDALFQG 604 + D G + ++K + K D A+I AL++ Sbjct: 501 KIDKYGNKTYEKKEPVRRKTDGFQALIHALYRA 533 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 43.5 bits (101), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 86/411 (20%), Positives = 172/411 (41%), Gaps = 50/411 (12%) Query: 115 ELMPWQKFIMCMLIGWRNSEGGKR-FTVAIISVSRGQGKTYILAILMVYSFLFESLGLSN 173 +L +QKFI+ + R SE + + +I + RG GK +++ ++ Y + G+ N Sbjct: 63 KLENFQKFIISFVF-LRYSETNRNVYKKILIMMGRGGGKNGLISGIIAY-LISPFHGIKN 120 Query: 174 QDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNK 233 + + + + Q F + +++ K+ K I T +SI + V+ + +N Sbjct: 121 YNVSLVANSEDQAKTSFDEIYNTVESNPKL---KEIYYNTKSEIKSIHTNSVMRFRTSN- 176 Query: 234 IRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS--YPDP 291 D +FDEI + + + + SG VKN + I T + Sbjct: 177 -------GNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREG 229 Query: 292 SVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE--LEDKK 349 + KD+ + W ++ + D+ E + E W K+NP+ + D Sbjct: 230 FIDSMKDKAKKVLSGAARW----NSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYA 285 Query: 350 DILLKGLIDKRNSDLLQ--GTLHDFQTKNLN---MWLQQDVDSYLNLADVEKAIIPEFSI 404 L ++ ++ ++++ +F TK ++ M +++ V S+ L ++ +P+ + Sbjct: 286 QELF-DMVCEQYEEMIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRE-LPD--M 341 Query: 405 HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVP----------FQRAGS 454 G+ C G+DY+ + D A+ +F DD + HSFV +R S Sbjct: 342 RGEVCIGGLDYAAIRDFAAVGLLFKDRDD-----YVWLSHSFVRKEFVDTYYGYSKRKDS 396 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDV 505 I+ K + I ++ E+ G TV + IN + +W V ++ D+ Sbjct: 397 INGKRQFAPI--KKWEQEGLLTVID--EASINPQYIVDWFVKMRDEEGYDL 443 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/411 (20%), Positives = 171/411 (41%), Gaps = 50/411 (12%) Query: 115 ELMPWQKFIMCMLIGWRNSEGGKR-FTVAIISVSRGQGKTYILAILMVYSFLFESLGLSN 173 +L +QKFI+ + R SE + + +I + RG GK +++ ++ Y L G+ N Sbjct: 63 KLENFQKFIISFVF-LRYSETNRNVYKKILIMMGRGGGKNGLISGIIAY-LLSPFHGIKN 120 Query: 174 QDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNK 233 + + + + Q F + +++ K+ K I T +SI + V+ + +N Sbjct: 121 YNVSLVANSEDQAKTSFDEIYNTVESNPKL---KEIYYNTKSEIKSIHTNSVMRFRTSN- 176 Query: 234 IRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTS--YPDP 291 D +FDEI + + + + SG VKN + I T + Sbjct: 177 -------GNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREG 229 Query: 292 SVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE--LEDKK 349 + KD+ + W ++ + D+ E + E W K+NP+ + D Sbjct: 230 FIDSMKDKAKKVLSGNARW----NSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYA 285 Query: 350 DILLKGLIDKRNSDLLQ--GTLHDFQTKNLN---MWLQQDVDSYLNLADVEKAIIPEFSI 404 L ++ ++ ++++ +F TK ++ M +++ V S+ L ++ +P+ + Sbjct: 286 QELFD-MVCEQYEEMVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRE-LPD--M 341 Query: 405 HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVP----------FQRAGS 454 G+ C G+DY+ + D A+ +F D + HSFV +R S Sbjct: 342 RGEVCIGGLDYAAIRDFAAVGLLFKNGAD-----YVWLSHSFVRKEFVDTYYGYSKRKDS 396 Query: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDV 505 I+ K + I ++ E+ G TV + IN + +W V ++ D+ Sbjct: 397 INGKRQFAPI--KKWEQEGLLTVID--EASINPQYIVDWFVKMRDEEGYDL 443 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 40.4 bits (93), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 116 LMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLG----- 170 L PWQK+++ ++ ++ G RF A++ V R GKT I A+L Y +L+ G Sbjct: 41 LFPWQKWLLIHMLE-LDAFGRLRFRKALVIVGRQNGKTLIAAVLAAY-WLYVDAGRWPDQ 98 Query: 171 LSNQDFLV 178 L QDF+V Sbjct: 99 LPEQDFIV 106 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 41/303 (13%) Query: 308 KDWDREADTS-LCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQ 366 K+W ++ D S +A DD E + ++K+NP L + + K I + + Sbjct: 236 KEWVKDDDFSHWVFYYALDDYDEVKDSSKYIKANPALGYTLSLEDIQKDFIGAIGNPVKM 295 Query: 367 GTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSD--NTAI 424 + TK N+ + D + + V+K ++P G+ IG D+S+ D T I Sbjct: 296 AKI---ITKRFNLSMT-DSTTIFSKQLVDKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVI 351 Query: 425 AFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGL 484 + + H + +A + + +D K+ T +G+ Sbjct: 352 GY---------RENGHY-------YFKAIPVMPESAED--------KFKHLGETITHEGI 387 Query: 485 IN-DDEVYEWIVNYIEDNALDVIFFGYD---AMGITKVIQMLMNNTGYNLQPIRQRTSEL 540 N DE ++ ++ + N I YD A + + YN + Q + +L Sbjct: 388 NNMTDEAWDAFMSAM--NGSVPIALNYDPNYAKNFIDKFEQTYDIEFYN--KVMQNSFKL 443 Query: 541 KDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGI-QVDKRKATLKIDVVDAIID 599 + + QKL EG I D K++ L+NA + + G+ ++ K+ T KID+ DA+I+ Sbjct: 444 SNTLEATQKLMEEGKI-HFDSKLLAVHLMNAETKINDFGLMRIIKKGYTDKIDLADALIN 502 Query: 600 ALF 602 ++ Sbjct: 503 LMW 505 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 37.0 bits (84), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 123/308 (39%), Gaps = 29/308 (9%) Query: 137 KRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTM 196 +R+ +A I ++R GKT +LA +M+Y L + G + + + + KQ + F M Sbjct: 77 RRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 Query: 197 LK-TVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFD 255 +K + I + K + + + D K N+ I+ +A + + D Sbjct: 135 VKFSPILSKRLKVVDYKKRIYD----------AKTNSFYDVIAADAKSALGSNPSGCGAD 184 Query: 256 EIGEVTNREKISKIVSGQVLVKNHQFVQI-STSYPDPSVPFRKDQKTLQEAMEKDWDREA 314 EI + + +G Q + + ST+ + + F + E + +D D Sbjct: 185 EILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPD-NP 243 Query: 315 DTSLCLVWAQDDLSE--TFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDF 372 D V+ ++ E + E W +NP L + + K + RN+ + + F Sbjct: 244 DFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 Query: 373 QTKNLNMWLQQDVDSYLNLADVEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAI 424 + LN W Q ++ + ++ F + GQ C+ G+D + D +I Sbjct: 304 K---LNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI 359 Query: 425 AFVFPYLD 432 ++FP D Sbjct: 360 CYLFPQSD 367 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 24/187 (12%) Query: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 E W +NP L + + K + RN+ + + F+ LN W Q ++ + Sbjct: 596 ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIRWMRMPA 651 Query: 394 VEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHS 445 ++ F + GQ C+ G+D + D +I ++FP D W Sbjct: 652 WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW----RH 707 Query: 446 FVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDV 505 ++P +D DG +E G+ VT +G + D +V + + IE +A Sbjct: 708 WIPESALAKLD--RLNDGRFAKEFVPGGWLKVT---EGDVLDFDV---VYDDIEADAKRF 759 Query: 506 IFFGYDA 512 G DA Sbjct: 760 TILGGDA 766 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 32.7 bits (73), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 19/133 (14%) Query: 315 DTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQT 374 D S L++ ++ + + + W + PL+ K G+I++ +L QG Q Sbjct: 257 DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK----WSGVIEE--YELAQGD-PALQN 309 Query: 375 KNL--NMWL-QQDVDSYLNLADVEKAIIPEFSI---HGQRCYIGIDYSMMSDNTAIAFVF 428 K L NM L QD Y D + + EF++ + R Y+GID S++ D TA++FV Sbjct: 310 KFLAFNMGLPMQDTAYYFTPQDTK---LTEFNLSVFNKNRTYVGIDLSLIGDLTAVSFV- 365 Query: 429 PYLDDEGKPKWHV 441 + EGK H Sbjct: 366 --CELEGKTYSHT 376 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 45/342 (13%) Query: 115 ELMPWQKFIMCMLIGWRN-SEGGKRFTVA---IISVSRGQGKTYILAILMVYSFLFESLG 170 EL+P Q++ +++G+ E G + + +++ RG GK+ ++A ++ + G Sbjct: 65 ELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 Query: 171 LSNQDFLVSSINFKQTSKLFGYVKTM------LKTVIKIEPFKTIAAETGLTDRSILNDE 224 + LV + + Q +F V+ L+ + + FK + + GL S Sbjct: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFK--STKQGLEFASF--KT 178 Query: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVK--NHQFV 282 K+ N+ +RA + + IFDE+ T E I++ V+ K N Q + Sbjct: 179 TFKKQTNDTLRAQGGNS--------SLNIFDEVH--TYGEDITESVNKGSRQKQDNWQSI 228 Query: 283 QISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 342 I++ + K L E + + + D S L++ ++ + + + W + PL Sbjct: 229 YITSGGLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPL 284 Query: 343 LELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNL--NMWL-QQDVDSYLNLADVEKAII 399 + K G+I++ +L QG Q K L NM L QD Y D + Sbjct: 285 IGSVPK----WSGVIEE--YELAQGD-PALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDF 337 Query: 400 PEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHV 441 + R Y+GID S++ D TA++FV + EGK H Sbjct: 338 NLSVFNKNRTYVGIDLSLIGDLTAVSFV---CELEGKTYSHT 376 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 32.3 bits (72), Expect = 0.017, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 45/342 (13%) Query: 115 ELMPWQKFIMCMLIGWRN-SEGGKRFTVA---IISVSRGQGKTYILAILMVYSFLFESLG 170 EL+P Q++ +++G+ E G + + +++ RG GK+ ++A ++ + G Sbjct: 65 ELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 Query: 171 LSNQDFLVSSINFKQTSKLFGYVKTM------LKTVIKIEPFKTIAAETGLTDRSILNDE 224 + LV + + Q +F V+ L+ + + FK + + GL S Sbjct: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFK--STKQGLEFTSF--KT 178 Query: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVK--NHQFV 282 K+ N+ +RA + + IFDE+ T E I++ V+ K N Q + Sbjct: 179 TFKKQTNDTLRAQGGNS--------SLNIFDEVH--TYGEDITESVNKGSRQKQDNWQSI 228 Query: 283 QISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 342 I++ + K L E + + + D S L++ ++ + + + W + PL Sbjct: 229 YITSGGLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPL 284 Query: 343 LELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNL--NMWL-QQDVDSYLNLADVEKAII 399 + K G+I++ +L QG Q K L NM L QD Y D + Sbjct: 285 IGSVPK----WSGVIEE--YELAQGD-PALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDF 337 Query: 400 PEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHV 441 + R Y+GID S++ D TA++FV + EGK H Sbjct: 338 NLSVFNKNRTYVGIDLSLIGDLTAVSFV---CELEGKTYSHT 376 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 31.6 bits (70), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 13/130 (10%) Query: 315 DTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQT 374 D S L++ ++ + + + W + PL+ K G+I++ +L QG Q Sbjct: 257 DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK----WSGVIEE--YELAQGD-PALQN 309 Query: 375 KNL--NMWL-QQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYL 431 K L NM L QD Y D + + R Y+GID S++ D TA++FV Sbjct: 310 KFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV---C 366 Query: 432 DDEGKPKWHV 441 + EGK H Sbjct: 367 ELEGKTYSHT 376 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 31.6 bits (70), Expect = 0.031, Method: Compositional matrix adjust. Identities = 64/324 (19%), Positives = 131/324 (40%), Gaps = 63/324 (19%) Query: 320 LVWAQDDLSETFEPETWVKSNPLLELEDKKDI----LLKGLIDKRNSDLLQGTLHDFQTK 375 L++ DD S+ +P W K+NP L+ E K + + + L R+S + L +K Sbjct: 230 LIFELDDYSQIEDPNEWYKANPALD-EAKGTVSTETITRELNAARHSTIKANNLF---SK 285 Query: 376 NLNMWLQQDVDSYLNLADVEKAIIPEFS--IHGQRCYIGIDYSMMSD---NTAIA----- 425 N + V S+ ++E +F + + +G D+S+ D N + Sbjct: 286 RFNFSVNA-VTSFFTAEEIEIVTDLDFEKVFYDKWAVLGCDFSLSGDTWGNVLLTKVEDT 344 Query: 426 -FVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGL 484 +++P +P + D + G Y + +K Sbjct: 345 LYIYP-----------------IPIRPKNVADKYKHLSGTFYHDEDK------------- 374 Query: 485 INDDEV-YEWIVNYIEDNALDVIFFGYDAMGITKVIQMLMNNT--GYNLQPIRQRTSELK 541 ND + + + + +++ + ++ GYD + + N ++ ++Q + Sbjct: 375 -NDTQAAVKLLFDKLQELRIGLVGIGYDPAYSANFLYLFEQNKIKARLMEKVKQNAFTVS 433 Query: 542 DPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLR-EDSIGIQVDKRKATLKIDVVDAIIDA 600 LQ+L + + +IM++ L NA ++ +D+ +++ K KID+VDA ++A Sbjct: 434 QHIMSLQRLLKTRGL-LYNSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLVDAAVNA 492 Query: 601 LFQGMY-----HFEDYGMANDKSW 619 L +Y + E Y N K+W Sbjct: 493 L--AVYELNRDYVEKYFERNTKTW 514 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 31.2 bits (69), Expect = 0.036, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 42/328 (12%) Query: 115 ELMPWQKFIMCMLIGW-RNSEGGKRFTVA---IISVSRGQGKTYILAILMVYSFLFESLG 170 EL+P Q++ +++G+ E G + + +++ RG GK+ ++A ++ + G Sbjct: 65 ELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 Query: 171 LSNQDFLVSSINFKQTSKLFGYVKTM------LKTVIKIEPFKTIAAETGLTDRSILNDE 224 + LV + + Q +F V+ L+ + + FK + + GL S Sbjct: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFK--STKQGLEFTSF--KT 178 Query: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVK--NHQFV 282 K+ N+ +RA + + IFDE+ T E I++ V+ K N Q + Sbjct: 179 TFKKQTNDTLRAQGGNS--------SLNIFDEVH--TYGEDITESVNKGSRQKQDNWQSI 228 Query: 283 QISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 342 I++ + K L E + + + D S L++ ++ + + + W + PL Sbjct: 229 YITSGGLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPL 284 Query: 343 LELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNL--NMWL-QQDVDSYLNLADVEKAII 399 + K G+I++ +L QG Q K L NM L QD Y D + Sbjct: 285 IGDVPK----WSGVIEE--YELAQGD-PALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDF 337 Query: 400 PEFSIHGQRCYIGIDYSMMSDNTAIAFV 427 + R Y+GID S++ D TA++FV Sbjct: 338 NLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 19/90 (21%) Query: 125 CMLIGW---RNSEGGKRFTVA------------IISVSRGQGKTYILAILMVYSFLFESL 169 C IGW R +G R +A +IS+ R GKTY++ + V++ + Sbjct: 31 CKNIGWTFDRWQDGLGRLILALDGTGLYAADTSVISIPRQVGKTYLIGCI-VFALALLTP 89 Query: 170 GLSNQDFLVSSINFKQTSKLFGYVKTMLKT 199 GL+ + ++ K + FG +K M T Sbjct: 90 GLT---VIWTAHRTKTAKETFGSMKAMCAT 116 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 27.3 bits (59), Expect = 0.64, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 408 RCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHV 441 R Y+ +DY + D+ AIAFV ++G +W V Sbjct: 369 RSYLHVDYGLKKDSAAIAFVRSTKLEDG--RWGV 400 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 26.6 bits (57), Expect = 0.94, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 115 ELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYIL 156 EL PWQ+F++ ++ +++G + A++ V R GKT I+ Sbjct: 60 ELDPWQEFVLRNMLN-LDAQGHWAASEALLLVPRQNGKTAII 100 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKL--FVEGSISRLDDKI------ 563 A+G T +++ +T Y P Q K P+ + ++L F+ +S+ + + Sbjct: 287 ALGFTAKRNVILLDT-YYYSPANQVVK--KAPSDYSKELREFMTKVVSKYNAPVDMQTVD 343 Query: 564 -MEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFED 610 E L N ++ G+ + K+D+VD + D L QG +++ D Sbjct: 344 SAEGGLRNQYYKD--YGVSLHPVAKGKKVDMVDFVCDLLAQGRFYYLD 389 >gi|19245|lcl|protein:vir:3850 Length: 237 # NCBI annotation: major tail protein # Family: family:all:1028 # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050156;swissprot:trembl:q9t1f1;genbank:gi :9633048;uniprot:Q9T1F1;genbank:GeneID:1262146 Length = 237 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 552 VEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDY 611 + +I+ L+ I +K + + E +GI+ ATL ++ + I +L QGMY E + Sbjct: 49 TQSNITGLNPTI-QKVYGSNTIAESEVGIE--NISATLAVNDMPFDISSLLQGMYKDETH 105 Query: 612 G 612 G Sbjct: 106 G 106 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 54/330 (16%) Query: 115 ELMPWQKFIMCMLIG------WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFES 168 E PWQK ++ ++ W + + G S+ R GKT I+ IL ++S L + Sbjct: 38 ECYPWQKNLLKEVMAIDEDGLWTHQKFG-------YSIPRRNGKTEIVYILELWS-LVQG 89 Query: 169 LGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMK 228 L + + +S+ + KL Y++ ++ E FK+I A+ I + V+ Sbjct: 90 LSILHTAHRIST-SHSSYEKLKKYLED--SGYVEGEDFKSIKAKGQERLELIESGGVI-- 144 Query: 229 KMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSY 288 + R + G + F + DE E T ++ + + V ++ + + Sbjct: 145 ----QFRTRTSSGGLGEGFDIL--VIDEAQEYTTEQESA--LKYTVTDSDNPMTIMCGTP 196 Query: 289 PDPSVPFR-----KDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLL 343 P P +D +A W W+ +D+ + + E W SNP + Sbjct: 197 PTPVSSGTVFTNYRDNTIAGKAKYSGWAE---------WSVEDVKDIHDVEAWYNSNPSM 247 Query: 344 --ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPE 401 L ++ K ++L + L D + L W + + S ++ + + Sbjct: 248 GYHLNER----------KIEAELGEDKL-DHNVQRLGYWPKYNQKSVISEQEWNALKVNR 296 Query: 402 FSIHGQRCYIGIDYSMMSDNTAIAFVFPYL 431 + + ++GI Y N A++ L Sbjct: 297 LPVIKGKLFVGIKYGNDGANVAMSIAVKTL 326 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 23.9 bits (50), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 322 WAQDDLSETFEPETWVKSNPLL--ELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 379 W+ +D+ + + E W SNP + L ++ K ++L + L D + L Sbjct: 226 WSVEDVKDIHDVEAWYNSNPSMGYHLNER----------KIEAELGEDKL-DHNVQRLGY 274 Query: 380 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYL 431 W + + S ++ + + + + ++GI Y N A++ L Sbjct: 275 WPKYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAMSIAVKTL 326 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 23.9 bits (50), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 457 AKEKQDGINYRELEKYG 473 AKEK+DG +Y+E++ G Sbjct: 73 AKEKKDGADYKEIDLLG 89 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 457 AKEKQDGINYRELEKYG 473 AKEK+DG +Y+E++ G Sbjct: 85 AKEKKDGADYKEIDLLG 101 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 457 AKEKQDGINYRELEKYG 473 AKEK+DG +Y+E++ G Sbjct: 85 AKEKKDGADYKEIDLLG 101 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.136 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,304 Number of Sequences: 514 Number of extensions: 15101 Number of successful extensions: 287 Number of sequences better than 100.0: 77 Number of HSP's better than 100.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 93 length of query: 657 length of database: 206,069 effective HSP length: 78 effective length of query: 579 effective length of database: 165,977 effective search space: 96100683 effective search space used: 96100683 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)