BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:4696|NCBI_annot:phi PVL ORF 2 homologue|genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID:1263 009 (564 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 1177 0.0 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 1177 0.0 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 1177 0.0 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 1176 0.0 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 1176 0.0 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 1174 0.0 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 357 e-100 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 348 7e-98 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 276 4e-76 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 271 2e-74 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 239 7e-65 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 239 7e-65 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 239 8e-65 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 238 1e-64 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 226 6e-61 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 214 2e-57 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 183 4e-48 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 180 3e-47 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 178 1e-46 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 172 7e-45 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 172 9e-45 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 172 1e-44 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 171 3e-44 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 169 5e-44 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 169 6e-44 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 169 8e-44 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 167 3e-43 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 167 4e-43 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 163 6e-42 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 160 3e-41 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 160 3e-41 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 160 3e-41 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 160 4e-41 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 158 2e-40 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 156 7e-40 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 155 2e-39 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 150 4e-38 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 149 6e-38 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 149 6e-38 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 149 7e-38 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 138 2e-34 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 137 3e-34 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 122 9e-30 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 117 3e-28 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 105 1e-24 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 105 1e-24 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 104 2e-24 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 101 2e-23 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 101 2e-23 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 98 2e-22 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 91 3e-20 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 90 6e-20 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 85 3e-18 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 84 5e-18 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 84 5e-18 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 81 3e-17 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 81 3e-17 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 80 4e-17 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 80 7e-17 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 80 9e-17 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 78 3e-16 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 74 6e-15 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 63 9e-12 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 61 4e-11 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 58 3e-10 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 53 9e-09 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 45 2e-06 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 29 0.18 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 28 0.26 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 28 0.26 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 28 0.34 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 27 0.69 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 27 0.71 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 27 0.74 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 26 1.3 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 26 1.4 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 25 1.7 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 25 1.8 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 25 2.2 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 25 2.5 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 25 2.5 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/564 (100%), Positives = 564/564 (100%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/564 (100%), Positives = 564/564 (100%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/564 (100%), Positives = 564/564 (100%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/564 (99%), Positives = 564/564 (100%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIE+GQSFKALS Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/564 (99%), Positives = 564/564 (100%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIE+GQSFKALS Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/564 (99%), Positives = 563/564 (99%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD Sbjct: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 Query: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ Sbjct: 61 PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM Sbjct: 181 PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM 240 Query: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK Sbjct: 241 YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 GMID KQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS Sbjct: 421 GMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 541 FTEARMHEFQENWTEKYESEEFGF 564 FTEARMHEFQENWTEKYESEEFGF Sbjct: 541 FTEARMHEFQENWTEKYESEEFGF 564 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 Query: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 Query: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 Query: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 Query: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 Query: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 Query: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 Query: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIEV Q+ L+ Sbjct: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 Query: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 Query: 541 FTEARMHEFQEN--WT 554 + + F + WT Sbjct: 558 YAVCYLEPFDGSGYWT 573 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 348 bits (894), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 Query: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 Query: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 Query: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 Query: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Query: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 Query: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 Query: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS 482 ID +V +++ FI +D++VQ + YDP+ +T IE +WP+++V Q LS Sbjct: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 Query: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 Query: 543 EARMHEFQENWT--EKYESEEFGF 564 A E +N+ ++ S++FGF Sbjct: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 276 bits (707), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 169/557 (30%), Positives = 297/557 (53%), Gaps = 29/557 (5%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNG---CHWDNHLSNKAIKFVEM 57 + + + YA+ VV G +A K+ C+R L+ +E ++D + ++ M Sbjct: 5 LLERIVHYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARM 64 Query: 58 LPDPK---TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMS 112 K QP+ L +FQ FIVG+++GW+R + R F KAYI +ARK KS +++ ++ Sbjct: 65 FKHNKGILAGQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIA 124 Query: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRS-KSKFIREKTDVRKTDIE 171 E P+ ++Y+A +Q+ ++ QV K K+ +R Sbjct: 125 SYECFLS--PE-QSEVYIAGWGREQSSIVYNEVLAQVQACDLLKGKYTDSYGRIRHKK-- 179 Query: 172 DVLSSSVFAPLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVS 230 S S+ PLS DGK+P++A++DE + E+Y +GM ++NPL ++++ Sbjct: 180 ---SGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIIT 236 Query: 231 TAGDNLNSQMYQEYKYIKRILN--EEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES 288 TAG NL S Y EY+Y+ ++++ + + YFV E+D ++++DE W+KA P++ + Sbjct: 237 TAGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIVAT 296 Query: 289 KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPN 347 E L ++++Q L+ L KN N+W Q+++ L + W I + Sbjct: 297 YEEGMNFL---RSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQID 353 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 ++ +D Y+G+DLS DLTSV I P DD + ++ SHSFI T L +K + DK+ Y+L Sbjct: 354 LDVRDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWSHSFIPEDT-LAEKRRTDKVPYDLW 412 Query: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 +++G T + ++DY+ + +I + N++ +CYDP+NA F +E A + Sbjct: 413 VKQGW--ITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEME--AEGY 468 Query: 468 PLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMN 527 ++E+ Q F+ LS+ K FR V +I H+DN +L ++ NAV+ +D +N+ ++K + Sbjct: 469 VMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIMLDKDKS 528 Query: 528 RQKIDPIISIITAFTEA 544 +IDPI ++I A A Sbjct: 529 TGRIDPIAALINAMVRA 545 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 271 bits (692), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 182/567 (32%), Positives = 295/567 (52%), Gaps = 35/567 (6%) Query: 1 MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMEN---PPNGCHWDNHLSNKAIKFVEM 57 M D VT+YA V+ G+ +A C+RH+ +E P +D + ++I F E Sbjct: 1 MDDRVTRYAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFED 60 Query: 58 L---PDPKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 L Q + L FQ FIVGS++GW + YR F K+Y+ +ARK KSL+ SG+ Sbjct: 61 LRFTDGEIAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIG 120 Query: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTD--I 170 + F +YP N Q+Y ++ KQA+ ++K A + + + +RE ++ D I Sbjct: 121 IKLAAFDKYP--NAQVYCTATKMKQARIVWKQARKFIEIEPD----LREIFKIKDHDAII 174 Query: 171 EDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVS 230 E +++ L + +DG DP I+DE S ++M + G Q L +++ Sbjct: 175 ESLINGGEIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIIT 234 Query: 231 TAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 TAG NLN Y+E++Y K +L V D YF+Y A+MD ++++ D W+KA PL+ Sbjct: 235 TAGFNLNGPCYKEWEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLP 294 Query: 291 HRKTILQNVKADIQDELEKGTSYHK-ILIKNFNLWQAQREDSLLDISDWEQVITPMP--N 347 L+N+K ++ +KG K L K+ N+W D + S W+ + + N Sbjct: 295 KG---LENLKRFAEESKQKGGDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLTLEN 351 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFP------NDDK--KVFLHSHSFIGLRTNLEQKSKR 399 GK Y G+DLS DLTS+ IFP N +K K F+HSHSFI R + + + Sbjct: 352 FKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIPKR-RVAEHIQS 410 Query: 400 DKINYELAIERGEAETTQSDSGM-IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFIT 458 D + Y++ IE G T++ G+ DYK +I ++ I L + + YDP NA +F+ Sbjct: 411 DDVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQ 470 Query: 459 TIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHN-DNMLLTTSVNNAVLIRDGE 517 +E + D +E+ QS K L+ ++F++ I++N +N LL+ SV NA L+ + Sbjct: 471 DLEELGFD--CVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLVSNSN 528 Query: 518 DNVKINKKMNRQKIDPIISIITAFTEA 544 +KI+K + ++IDP+ ++I A+ A Sbjct: 529 GEIKIDKNLQEKRIDPVDAVIDAYKLA 555 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 239 bits (609), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 144/487 (29%), Positives = 264/487 (54%), Gaps = 22/487 (4%) Query: 63 TNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + L +FQ F+ +++G+++ R F K +I +ARK KS ++ ++ G Sbjct: 72 AGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGD 131 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 ++ Y+A T Q+ +++ + S S+ + K + IE + SV Sbjct: 132 E---KQRAYIAGWTRDQSSEVYEAVKTGI----SSSELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 PLS DGK+P++ I+DE + DE+Y +GM +K PL +++TAG +L+ Sbjct: 185 PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRP 244 Query: 240 MYQEYKYIKRILN--EEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Y+EY+Y+ IL+ + V D+YFV E++ ++++DE+ WIKA P++ + E L+ Sbjct: 245 CYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEG---LE 301 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 +++D++ L++ L KN N+W ++++ +D+S W++ + +G ++IG Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATLWIGG 361 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 DLS DLTSVG++ +D+ + HSF+ L++K DK+ Y+L E+G T Sbjct: 362 DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLWAEQGYLTLTP 420 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFK 477 + M+DY V +I F + D +Q YD WNA +E+ +E+ Q Sbjct: 421 GE--MVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLENKGF--VCVEIPQRIA 474 Query: 478 ALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISI 537 LS K FR V +++++HN + +L ++NNAV+ D ++N+ I+KK+++ +IDP ++ Sbjct: 475 NLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAV 534 Query: 538 ITAFTEA 544 + AF+ A Sbjct: 535 LNAFSRA 541 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 239 bits (609), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 144/487 (29%), Positives = 263/487 (54%), Gaps = 22/487 (4%) Query: 63 TNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + L +FQ F+ +++G+++ R F K +I +ARK KS ++ ++ G Sbjct: 72 AGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGD 131 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 ++ Y+A T Q+ +++ + S S+ + K + IE + SV Sbjct: 132 E---KQRAYIAGWTRDQSSEVYEAVKTGI----SSSELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 PLS DGK+P++ I+DE + DE+Y +GM +K PL +++TAG +L+ Sbjct: 185 PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRP 244 Query: 240 MYQEYKYIKRILN--EEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Y+EY+Y+ IL+ + V D+YFV E++ ++++DE+ WIKA P++ + E L+ Sbjct: 245 CYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEG---LE 301 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 +++D++ L++ L KN N+W ++++ +D+S W++ + +G ++IG Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTXDFSGATLWIGG 361 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 DLS DLTSVG++ +D+ + HSF+ L++K DK+ Y+L E+G T Sbjct: 362 DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLWAEQGYLTLTP 420 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFK 477 + M+DY V +I F + D +Q YD WNA +E+ +E+ Q Sbjct: 421 GE--MVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLENKGF--VCVEIPQRIA 474 Query: 478 ALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISI 537 LS K FR V +++++HN + +L ++NNAV+ D ++N+ I+KK+++ +IDP ++ Sbjct: 475 NLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAV 534 Query: 538 ITAFTEA 544 + AF A Sbjct: 535 LNAFXRA 541 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 239 bits (609), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 144/487 (29%), Positives = 263/487 (54%), Gaps = 22/487 (4%) Query: 63 TNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + L +FQ F+ +++G+++ R F K +I +ARK KS ++ ++ G Sbjct: 72 AGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGD 131 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 ++ Y+A T Q+ +++ + S S+ + K + IE + SV Sbjct: 132 E---KQRAYIAGWTRDQSSEVYEAVKTGI----SSSELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 PLS DGK+P++ I+DE + DE+Y +GM +K PL +++TAG +L+ Sbjct: 185 PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRP 244 Query: 240 MYQEYKYIKRILN--EEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Y+EY+Y+ IL+ + V D+YFV E++ ++++DE+ WIKA P++ + E L+ Sbjct: 245 CYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEG---LE 301 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 +++D++ L++ L KN N+W ++++ +D+S W++ + +G ++IG Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLDFSGATLWIGG 361 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 DLS DLTSVG++ +D+ + HSF+ L++K DK+ Y+L E+G T Sbjct: 362 DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLWAEQGYLTLTP 420 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFK 477 + M+DY V +I F + D +Q YD WNA +E+ +E+ Q Sbjct: 421 GE--MVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLENKGF--VCVEIPQRIA 474 Query: 478 ALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISI 537 LS K FR V +++++HN + +L ++NNAV+ D ++N+ I+KK+++ +IDP ++ Sbjct: 475 NLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAV 534 Query: 538 ITAFTEA 544 + AF A Sbjct: 535 LNAFARA 541 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 238 bits (608), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/487 (29%), Positives = 263/487 (54%), Gaps = 22/487 (4%) Query: 63 TNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + L +FQ F+ +++G+++ R F K +I +ARK KS ++ ++ G Sbjct: 72 AGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGD 131 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 ++ Y+A T Q+ +++ + S S+ + K + IE + SV Sbjct: 132 E---KQRAYIAGWTRDQSSEVYEAVKTGI----SSSELLEGKWKEAYSTIEIFKNGSVVV 184 Query: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 PLS DGK+P++ I+DE + DE+Y +GM +K PL +++TAG +L+ Sbjct: 185 PLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRP 244 Query: 240 MYQEYKYIKRILN--EEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Y+EY+Y+ IL+ + V D+YFV E++ ++++DE+ WIKA P++ + E L+ Sbjct: 245 CYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEG---LE 301 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 +++D++ L++ L KN N+W ++++ +D+S W++ + +G ++IG Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATLWIGG 361 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 DLS DLTSVG++ +D+ + HSF+ L++K DK+ Y+L E+G T Sbjct: 362 DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLWAEQGYLTLTP 420 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFK 477 + M+DY V +I F + D +Q YD WNA +E+ +E+ Q Sbjct: 421 GE--MVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLENKGF--VCVEIPQRIA 474 Query: 478 ALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISI 537 LS K FR V +++++HN + +L ++NNAV+ D ++N+ I+KK+++ +IDP ++ Sbjct: 475 NLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAV 534 Query: 538 ITAFTEA 544 + AF A Sbjct: 535 LNAFARA 541 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 226 bits (576), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 171/584 (29%), Positives = 287/584 (49%), Gaps = 33/584 (5%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCH----WDNHLSNKAIKFVEML 58 D YA V+ G I++ K Q CKRH+ + +D+ + K ++F +L Sbjct: 14 DPALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFSTLL 73 Query: 59 PDPKTNQPMPLMEFQKFIVGSLYGWRRGQYR--MFTKAYISMARKQGKSLIVSGMSVNEL 116 D + +P +QKFI+ S+ GWR + + F +ISMAR GK+ +++ ++ Sbjct: 74 KDVTSGEPFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKTQVLATYALYNF 133 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFK-MASQQVNLMRSKSKFIREKTDVRKTD--IEDV 173 LFG PK NRQ+ V+S +F M + L K + + D+ +E Sbjct: 134 LFGS-PKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVFKKLAKALDINDNSQVMEIK 192 Query: 174 LSSSVFAPLSNNPDAVDGKDPTVAILDE--LASMPDDEMYSRFKTGMTLQKNPLT--LLV 229 S+V LS D T I+DE L + S +GM NPL + Sbjct: 193 KQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQKQRDFISSMTSGMV--NNPLAQMFFI 250 Query: 230 STAGDNLNSQMYQEYKYIKRIL--NEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLE 287 STAG + M+++YK ++L + ++ V E DS++E W K+ PL+E Sbjct: 251 STAGVDPTVPMFEDYKRYSKMLESGDWSSSEKDLVLIWEQDSEDEAYLIETWPKSNPLME 310 Query: 288 SKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPN 347 + RK + + + + +D L +KN NLWQ ++++ L + + I + Sbjct: 311 IESMRKNLTEGMITE-RDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQDAIVDEFD 369 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYE 405 G+DV+IG D S+ +D TS+ F+FP+ K L+ HS+I + ++E K +RD I+Y Sbjct: 370 YFGRDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIPIAKAGSIEAKEQRDNIDYR 429 Query: 406 LAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL 465 E+G A T+ G+ID +V ++++ FI ++L V+A+ YD W +FI ++ + Sbjct: 430 AVQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWGTGNFIRRLDEVKE 489 Query: 466 DWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNML----LTTSVNNAVLIRDGEDNVK 521 ++ LI V Q K+L++ K ++ I+HN ML L + NAV + D + +K Sbjct: 490 EYLLIPVRQGIKSLNEPTK----FLQSSFIKHNITMLDDQALIQGLVNAVTVSDN-NGIK 544 Query: 522 INKKMNRQKIDPIISIITAFTEARMHEFQE--NWTEKYESEEFG 563 ++K +N QKID +I+ A E + + F + N EK + FG Sbjct: 545 LDKNVNSQKIDAADAIVNALYEGQFY-FNDFTNVEEKKTNSPFG 587 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 214 bits (544), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 169/569 (29%), Positives = 287/569 (50%), Gaps = 42/569 (7%) Query: 8 YAKKVVSGEILASLKNIQVCKRHLS---FMENPPNGCHWDNHLSNKAIKFVEMLPDPKT- 63 Y+ ++ G+I A ++ Q CKR L+ ME+ +WD + + +K+ K Sbjct: 12 YSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGV 71 Query: 64 --NQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG 119 +P+ L + KF+V ++ W+ YR F A+I +ARK KS + +GM+ E+ Sbjct: 72 LEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGMAGYEIGAK 131 Query: 120 QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF 179 Y ++Y QA+ +F ++ LM SK ++++ + I+ S+S Sbjct: 132 GYNA--AEVYTLGVERDQAKIVF----EEWELMASKP--LKKRFKFTQKVIKHKKSNSFI 183 Query: 180 APLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLN- 237 LS DGK+P +A++DE + P+ +MY K+GM + PL ++++TAG++ Sbjct: 184 KHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGEDYEE 243 Query: 238 SQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR-KTIL 296 + Y EY IL+ + YFV E++ +++ DE WIKA P+L + E +++ Sbjct: 244 TACYYEYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPVLCTYEEGIESMR 303 Query: 297 QNVKADIQDELEKGTSYHK----ILIKNFNLWQAQREDSLLDISDWEQV---ITPMPNIN 349 QN L K TS + L KN N++ A E +D+ W+ IT + Sbjct: 304 QNAN------LAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENIT-LEKFR 356 Query: 350 GKDVYIGVDLSRLDDLTSVGFIFPNDD---KKVFLHSHSFIGLRTNLEQKSKRDKINYEL 406 G D YIG+DLS+ DLTS+ F FP D +K L SFI +++K K D + Y + Sbjct: 357 GHDCYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIPAEV-VKEKMKTDNVPYNI 415 Query: 407 --AIERGEAETTQSDSG-MIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESM 463 + E+G T+++ G ++D +++ I + ++LNV V YDP A ++ +E Sbjct: 416 WSSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLVSELERR 475 Query: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKIN 523 D+ +E GQS L+++ FR + ++I H++N L+T V NA + +KI+ Sbjct: 476 --DYNCVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKIS 533 Query: 524 KKMNRQKIDPIISIITAFTEARMHEFQEN 552 KK ++IDP+ S I A A + +EN Sbjct: 534 KKSRFKRIDPLASCIFAHNRAMTYWNREN 562 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 183 bits (465), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 141/567 (24%), Positives = 263/567 (46%), Gaps = 43/567 (7%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW----DNHLSNKAIKFVEMLPDPK 62 +YA+ ++SG+ILA C+RHL ++N N ++ D L+ +A FV++LP Sbjct: 12 QYARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSS 71 Query: 63 TN---QPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELL 117 + Q + +Q FI S++GW ++G+ R F + YI + RK GKS +G+ + + Sbjct: 72 GDLKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGM--YM 129 Query: 118 FGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSS 177 F + ++Y ++ QA+ +F ASQ L+ K ED S Sbjct: 130 FCADGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTRED---GS 186 Query: 178 VFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLN 237 VFAP+ NP DG P+ AI+DE P D +YS TGM + PLTL+++TAG ++ Sbjct: 187 VFAPVVGNPG--DGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIE 244 Query: 238 SQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 S Y + +K+ L++ + + F E+D+ + QD IKA P L + +++ Sbjct: 245 SPCYDKDNEVKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYEDLVE 304 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDVY 354 K + + + T + I K+ N+W + + + ++ W E + N G++ + Sbjct: 305 --KLHLAKTVPRMT--NDIKTKHLNMWVSGKT-AFFNMDHWAKAEDKNLKLSNFKGEESH 359 Query: 355 IGVDLSRLDDLTSVGFIFPND----------DKKVFLHSHSFIGLRTNLEQKSKRDK--I 402 +G+DL+ DL + +F + K ++ + + + + +KR + + Sbjct: 360 LGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWV 419 Query: 403 NYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIES 462 N + A G + +D DY++++ ++ + + ++ DP A + + Sbjct: 420 NMQWA---GGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELAD 476 Query: 463 MALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN--AVLIRDGEDNV 520 + I + Q F +S +KE +A R H+ N +L ++N + +D V Sbjct: 477 NGFE--PINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRV 534 Query: 521 KINKKMNRQKIDPIISIITAFTEARMH 547 + K + KID +++ A A +H Sbjct: 535 RPTKGDKQSKIDGATALLMAIGRAMLH 561 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 180 bits (457), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 Query: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 N+ VAS +KQ +F + + + F +V D + Sbjct: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 Query: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 Query: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 Query: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 Query: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 Query: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 ++++ Q AL+ K + ++ ++ ++ ++ NAV I+ + + ++K Sbjct: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-IKADKIGIHVDKDKAT 564 Query: 529 QKIDPIISIITAFTEARMHEFQEN 552 +ID + +II A +A M+ F EN Sbjct: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 178 bits (452), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 147/564 (26%), Positives = 265/564 (46%), Gaps = 25/564 (4%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPN---GCHWDNHLSNKAIKFVEMLP 59 D TKYA V+ + C RHL ++ N +++ + +KF +M P Sbjct: 39 DPATKYAFDVLDEKYTTGYLMQLACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAP 98 Query: 60 DPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + T +P LME+QKF++ L GWR + + F++A IS+ R QGK+ +++ + Sbjct: 99 NVDTMEPTKLMEWQKFMLSLLIGWRNKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFFV 158 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKS--KFIREKTDVRKTDIEDVL-- 174 N+ V+S KQ ++ +N++R+ + K I +KTD+ + ++ Sbjct: 159 ESRGLSNQDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRN 218 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 ++V P+S+ D T AI DE+ + E S+ +G N + +STA Sbjct: 219 HNNVIRPISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYP 278 Query: 235 NLNSQMYQEYKYIKRILNEEV--RADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 + +++ K +++ + ++ AD Y DS +E W+K+ PLL+ Sbjct: 279 DPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEH 338 Query: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 ++Q + +++ G + H KN N+W + DS L+++D E+ I P NI G+ Sbjct: 339 DNLMQGLLDKRDNDVLTG-AVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIYGQR 397 Query: 353 VYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLRT--NLEQKSKRDKINYEL 406 Y+GVD S D T+V F++P K + HSFI + ++E K K+D INY Sbjct: 398 CYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRE 457 Query: 407 AIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALD 466 +G T G+I+ + ++IV +I + L+V YD +T + M L+ Sbjct: 458 LETKGFCTITSHQQGLINDDEFYEWIVNYIEENSLDVLFFGYDAMG----VTKVIQMLLN 513 Query: 467 ---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKIN 523 + L + Q L++ K + + I D+ ++ ++ NAVL R+ ++++ Sbjct: 514 NTGFNLQPIRQRTGELAKPTKFLQKIFVEGTISRLDDKIMEKALLNAVL-REDSVGIQVD 572 Query: 524 KKMNRQKIDPIISIITAFTEARMH 547 K+ KID + +II A + H Sbjct: 573 KRKATLKIDVVDAIIDALYQGMNH 596 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 172 bits (437), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 135/562 (24%), Positives = 260/562 (46%), Gaps = 20/562 (3%) Query: 6 TKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNG---CHWDNHLSNKAIKFVEMLPDPK 62 TKY + G I+ C RHL ++ N +D ++K ++F + P+ Sbjct: 32 TKYCFDALEGRIVTGYMIKLACFRHLRDLQRQGNDDFPYTYDTAEADKLLRFARICPNVD 91 Query: 63 TNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 T +P LM +QKFI+ L+GWR + F++A +S+ R QGK+ +++ ++ + Sbjct: 92 TGEPTQLMPWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESF 151 Query: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKF--IREKTDVRKTDIEDVLSSS-- 177 N+ V S +KQ + + + K F + +T++ + ++ ++ Sbjct: 152 GLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNN 211 Query: 178 VFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLN 237 + +S D T AI DE+ + S+ +G N + +STA N + Sbjct: 212 ILRAISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAYPNPS 271 Query: 238 SQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTI 295 ++ +++ + ++ AD Y D+ EEV W+K+ PLL+ ++ R + Sbjct: 272 VPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNL 331 Query: 296 LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYI 355 ++ + +L G + +KN N W +S LD+ D E + +I GK VY+ Sbjct: 332 MKGLLDKRDSDLLSG-NLSDFQVKNMNCWLLADSNSFLDLKDIENAVIDDFDIKGKRVYV 390 Query: 356 GVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIE 409 G+D S D T++GF++P + +K + HSFI + ++E K ++D INY Sbjct: 391 GLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYRDLET 450 Query: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPL 469 +G T G+I+ ++V + + ++ + L+V YD I +ES +PL Sbjct: 451 KGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESNT-SFPL 509 Query: 470 IEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQ 529 + + Q L K + + I D+ ++ ++ NAV I++ ++++K + Sbjct: 510 MPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAV-IKEDNIGIQVDKMKSTY 568 Query: 530 KIDPIISIITAFTEARMHEFQE 551 KID + ++I AF + M+ F++ Sbjct: 569 KIDVVDALIDAFYDG-MYAFED 589 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 172 bits (436), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 139/562 (24%), Positives = 257/562 (45%), Gaps = 20/562 (3%) Query: 6 TKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNG---CHWDNHLSNKAIKFVEMLPDPK 62 TKY V+ G I A C RHL ++ N +D + + ++F + P+ Sbjct: 32 TKYCFDVLEGRITAGYMIKLACFRHLRDLQRQGNDDFPYSYDTDEAARLLRFARICPNVD 91 Query: 63 TNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 T +P LM +QKFI+ L+GWR + F++A +S+ R QGK+ +++ ++ Sbjct: 92 TGEPTKLMAWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESL 151 Query: 122 PKFNRQIYVASSTYKQAQTIF----KMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSS 177 N+ V S +KQ + M Q + KS + + + +++ Sbjct: 152 GLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSDQVIMKANNN 211 Query: 178 VFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLN 237 V +S D T AI DE+ + + S+ +G N + +STA N + Sbjct: 212 VLRAISAESGQYDSFHFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYPNPS 271 Query: 238 SQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTI 295 ++ + +++ + ++ AD Y D+ EEV W K+ PLL+ ++ R+ + Sbjct: 272 VPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLLDLEQERENL 331 Query: 296 LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYI 355 ++ + +L G + +KN N W +S LD+ D E + P + GK VY+ Sbjct: 332 MKGLMDKRDSDLLSG-NIADFQVKNMNCWLLADSNSFLDLKDIENAVIPEFDRRGKRVYV 390 Query: 356 GVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIE 409 G+D S D T++GF++P + +K + HSFI + +LE K ++D +NY Sbjct: 391 GLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEA 450 Query: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPL 469 +G T G+I+ ++V + V ++ + L+V YD I +ES PL Sbjct: 451 KGFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMMINKIIKALESNT-SLPL 509 Query: 470 IEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQ 529 + + Q L K + + I D+ ++ ++ NAV I++ ++++K + Sbjct: 510 MPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGIQVDKMKSTY 568 Query: 530 KIDPIISIITAFTEARMHEFQE 551 KID + ++I AF + M+ F++ Sbjct: 569 KIDVVDALIDAFYDG-MYAFED 589 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 99 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 158 Query: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 159 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 215 Query: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 D +L+ V +S+ D T AI DE+ + + E S+ +G L Sbjct: 216 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVL 275 Query: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 KN + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 Query: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 394 Query: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 395 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 Query: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 514 Query: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 515 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 570 Query: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 AVL R+ ++++K+ KID + +II A + H Sbjct: 571 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 607 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 171 bits (432), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 Query: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 Query: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 Query: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 Query: 417 QSDSGMID 424 + +I+ Sbjct: 409 SGEELIIN 416 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 169 bits (429), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 140/518 (27%), Positives = 249/518 (48%), Gaps = 31/518 (5%) Query: 52 IKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQY-RMFTKAYISMARKQGKSLIVSG 110 +K ++P+ T +P LM +QKFI+ L GWR + + FT A IS++R QGK+ I++ Sbjct: 102 LKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAI 161 Query: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 + V LF N+ V+S +KQ +F ++++ K KT +T + Sbjct: 162 LMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVK---TMLKTVIKIEPFKTIAAETGL 218 Query: 171 ED--VLSSSV--------FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTL 220 D +L+ V +S+ D T AI DE+ + + E S+ +G + Sbjct: 219 TDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVM 278 Query: 221 QKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEE--VRADNYFVYCAEMDSQEEVQDETK 278 +N + +ST+ + + ++ K ++ + ++ AD D E + Sbjct: 279 VENHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 338 Query: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 W+K+ PLLE ++ + +L+ + +L +GT H KN N+W Q DS L+++D Sbjct: 339 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGT-LHDFQTKNLNMWLQQDVDSYLNLADV 397 Query: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVFLH--SHSFIGLR--TN 392 E+ I P +I+G+ YIG+D S + D T++ F+FP +D+ K H HSF+ + + Sbjct: 398 EKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 457 Query: 393 LEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWN 452 ++ K K+D INY + G T G+I+ +V ++IV +I + L+V YD Sbjct: 458 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMG 517 Query: 453 AQSFITTIESMALD---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNN 509 IT + M ++ + L + Q L K + + I D+ ++ S+ N Sbjct: 518 ----ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLN 573 Query: 510 AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMH 547 AVL R+ ++++K+ KID + +II A + H Sbjct: 574 AVL-REDSIGIQVDKRKATLKIDVVDAIIDALFQGMYH 610 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 169 bits (429), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 142/567 (25%), Positives = 267/567 (47%), Gaps = 23/567 (4%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCH---WDNHLSNKAIKFVEMLP 59 D T+Y V+ G+I+A C RHL ++ N + N+ +KF+ ++P Sbjct: 30 DAGTRYCFDVLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVP 89 Query: 60 D-PKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMARKQGKSLIVSGMSVN-EL 116 + +Q + M++Q FI ++ W F+ IS+AR QGK++I +G+ +N Sbjct: 90 NVDDLSQKLEPMDWQLFIFSQIFAWFDLDNVPRFSNIIISIARSQGKTMI-AGICLNFSY 148 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKF--IREKTDVR--KTDIED 172 L + N+ V+S T+ Q +F + + F + E+T ++ +I+ Sbjct: 149 LIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKS 208 Query: 173 VLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTA 232 +L ++ +S D K +A+ DE+ + DE S+ +G + + +ST+ Sbjct: 209 LLDANTINTISFESGKFDSKHFKLAVADEVGELRTDEGISKITSGQVNTEGSRFIEISTS 268 Query: 233 GDNLNSQMYQEYKYIKRILNEEV--RADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 + +QE K + I+ + D+ D+ EEV W K+ PLL E Sbjct: 269 YQTPDVPFHQEQKKLIEIMERDFDRSGDDQLCLIWSQDNLEEVFKPETWAKSNPLLNHPE 328 Query: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNING 350 ++ +++ + ++ +L G +KN N W +S LD++D E + P +I G Sbjct: 329 LKEGLMKGLLSERDKKLLMG-KLADFQVKNMNCWLLADSNSFLDLTDIENAVIPEFDIRG 387 Query: 351 KDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRDKINY 404 K VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D +NY Sbjct: 388 KRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNY 447 Query: 405 ELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMA 464 E+G T G+I+ ++V + ++ + L+V YD I +ES Sbjct: 448 RDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAMGVSKIIKALESNT 507 Query: 465 LDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK 524 +PL+ + Q L K + + I D+ ++ ++ NAV I++ ++++K Sbjct: 508 -SFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGIQVDK 565 Query: 525 KMNRQKIDPIISIITAFTEARMHEFQE 551 + KID + ++I AF +A M+ F++ Sbjct: 566 MKSTYKIDVVDALIDAFYDA-MYAFED 591 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 169 bits (428), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 153/568 (26%), Positives = 279/568 (49%), Gaps = 31/568 (5%) Query: 6 TKYAKKVVSGEILASLKNIQV-CKRHLSFMENPPNG---CHWDNHLSNKAIKFVEMLPDP 61 T+YA V+ + + +++Q+ C RHL+ + N + + + N F +LP+P Sbjct: 36 TRYAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMVNAIEYFSRLLPNP 95 Query: 62 K-TNQPMPLMEFQKFIVGSLYGWRR-GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG 119 T++ + ++Q FI+ SL GWR FT + IS+AR+QGK+ + S + Sbjct: 96 DDTSKKIQPFKWQSFILDSLIGWRTVDNGTRFTTSNISIARQQGKTWLASILINFYYFVV 155 Query: 120 QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF 179 + ++ + VAS + A +F S Q + S +F D R+ +E ++ V Sbjct: 156 CWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPEF---ADDARERGVE-AQTTQVI 211 Query: 180 APLSNNP--------DAVDGKDPTVAILDELASMPD--DEMYSRFKTGMTLQKNPLTLLV 229 A + N D +A+ DE+ ++ +E + +G KN + + + Sbjct: 212 AKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKI 271 Query: 230 STAGDNLNSQMYQEYKYIKR-ILNEEVR-ADNYFVYCAEMDSQEEVQDETKWIKAMP-LL 286 STA ++ + + + I ++ VR ADN F DS++EV + W K+ P LL Sbjct: 272 STAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLL 331 Query: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 E + ++ LQN +++ E+ + + K+ NLW + ++S L + + ++ I Sbjct: 332 ELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRSIIDRF 391 Query: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVF-LHSHSFIGLR--TNLEQKSKRDK 401 ++NG+DV+IG D S+ +D TS GFI+P + DK +F + HSFI +E KSK+D Sbjct: 392 DVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDG 451 Query: 402 INYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIE 461 ++Y + G + T SG+I+ QV ++V ++ H L V+ + DP + + +E Sbjct: 452 LDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIADPNHGEWLEKKLE 511 Query: 462 SMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 W + + L++ K+F+ + I ++ LL +NNAVL+ D +VK Sbjct: 512 HYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGLNNAVLVEDRGGSVK 571 Query: 522 INKKMNR--QKIDPIISIITAFTEARMH 547 I+++ NR ID ++I A +A+ + Sbjct: 572 IDRQ-NRTSDHIDTTDALINAHAQAKFY 598 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 167 bits (423), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 156/590 (26%), Positives = 260/590 (44%), Gaps = 66/590 (11%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHL-----SFMENPPNGCHWDNHLSNKAIKFVEMLP 59 KYA+ +V G+I+A C+RH S +N P +D L+ +A KFV++LP Sbjct: 10 ANKYARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPY--KFDRDLAERACKFVQLLP 67 Query: 60 DPK---TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVN 114 Q + L +Q FI S++GW ++ + R F +AYI +ARK GKS +G+ + Sbjct: 68 HSSGELAGQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGI- 126 Query: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRK-TDIEDV 173 F + + ++Y ++T QA+ +F A Q M S+ +R + D+ TD Sbjct: 127 -YTFCADGENSAEVYCGATTMAQAKKVFTPARQ----MASRLPALRSRFDISVWTDSLTR 181 Query: 174 LSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 SVFAP++ P DG P AI+DE D MY GM + PLTL+++TAG Sbjct: 182 PDGSVFAPMAGKPG--DGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAG 239 Query: 234 DNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMP--------- 284 +L S Y + K +K + + F E+D ++ D IKA P Sbjct: 240 SSLESPCYDKDKEVKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYS 299 Query: 285 -LLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVIT 343 L+E E K + + V A L S K N W+A ED L + D+ Sbjct: 300 DLVELLEVAKQVPRKVNAFKTKRLNIWVS-GKSAFYNMEQWKAA-EDKNLKLEDFAN--- 354 Query: 344 PMPNINGKDVYIGVDLSRLDDLTSVGFIFPND----------DKKVFLHSHSFIGLRTNL 393 +G+DL++ D+ + +F + K ++ + L Sbjct: 355 -------DTCNVGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKL 407 Query: 394 EQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNA 453 + + R Y+ E G E T D DY++++ I+ + + + DP A Sbjct: 408 LKTADR----YQKFYEMGALEAT--DGAEADYREILASILDMQGEN--RIDEIDIDPAGA 459 Query: 454 QSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAV-- 511 + +E + ++++ Q + +S ++KE +A R H+ N +LT ++N + Sbjct: 460 TALRHQLEDYG--FTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGK 517 Query: 512 LIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYESEE 561 I +D V+ K N+ KID ++ A T A ++E T Y+ E+ Sbjct: 518 FIPGSDDLVRPTKGDNQSKIDGATALFNAMTRAMLNE-SSGGTSVYDEED 566 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 167 bits (422), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 152/568 (26%), Positives = 279/568 (49%), Gaps = 31/568 (5%) Query: 6 TKYAKKVVSGEILASLKNIQV-CKRHLSFMENPPNG---CHWDNHLSNKAIKFVEMLPDP 61 T+YA V+ + +++Q+ C RHL+ + N +++ + N F +LP+P Sbjct: 35 TRYAYDVMFTNKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYNSDMVNAIEYFSRLLPNP 94 Query: 62 K-TNQPMPLMEFQKFIVGSLYGWRR-GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG 119 T++ + ++Q FI+ SL GWR FT + IS+AR+QGK+ + S + Sbjct: 95 DDTSKKIQPFKWQSFILDSLIGWRTIDNGTRFTTSNISIARQQGKTWLASILINFYYFVV 154 Query: 120 QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF 179 + ++ + VAS + A +F S Q + S F D R+ +E ++ V Sbjct: 155 CWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPDF---ADDARERGVE-AQTTQVI 210 Query: 180 APLSNNP--------DAVDGKDPTVAILDELASMPD--DEMYSRFKTGMTLQKNPLTLLV 229 A + N D +A+ DE+ ++ +E + +G KN + + + Sbjct: 211 AKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKI 270 Query: 230 STAGDNLNSQMYQEYKYIKR-ILNEEVR-ADNYFVYCAEMDSQEEVQDETKWIKAMP-LL 286 STA ++ + + + I ++ VR ADN F DS++EV + W K+ P LL Sbjct: 271 STAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVFEPETWAKSNPNLL 330 Query: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 E ++ ++ LQ +++ E+ + + K+ NLW + ++S L + + ++ I Sbjct: 331 ELQKSKRDNLQKALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRSIIDHF 390 Query: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP--NDDKKVF-LHSHSFIGLR--TNLEQKSKRDK 401 ++NG+DV+IG D S+ +D TS GFI+P + DK +F + HSFI +E KSK+D Sbjct: 391 DVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDG 450 Query: 402 INYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIE 461 ++Y + G + T SG+I+ +QV ++V ++ H L V+ + DP + + +E Sbjct: 451 LDYLKLQDEGFVDITNLASGVINTEQVYQWLVDYVNQHRLKVKFIIADPNHGEWLEKKLE 510 Query: 462 SMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 W + + L++ K+F+ + I ++ LL +NNAVL+ D +VK Sbjct: 511 HYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNITMLNDPLLIDGLNNAVLVEDRGGSVK 570 Query: 522 INKKMNR--QKIDPIISIITAFTEARMH 547 I+++ NR ID ++I A +A+ + Sbjct: 571 IDRQ-NRTSDHIDTTDALINAHAQAKFY 597 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 163 bits (412), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 143/578 (24%), Positives = 259/578 (44%), Gaps = 45/578 (7%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNG---CHWDNHLSNKAIKFVEMLPDPKT 63 +YA+ VV G+I A IQ C+RH+ M + +D ++ KA KF+++LP K Sbjct: 14 QYARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLPHTKG 73 Query: 64 NQPMPLM-----EFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 M +Q FIV +GW + + R F + Y + RK GKS I +G+++ Sbjct: 74 EWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVAL--Y 131 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREK--TDVRKTDIEDVL 174 F +F ++Y ++T KQA +F+ A LM ++ + E +V +++ Sbjct: 132 CFTCDNEFGAEVYSGATTEKQAWEVFRPA----RLMCKRTPLLVEAFGIEVNASNLNRPE 187 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 + F PL NP DG P AI+DE P D +Y+ TGM ++ PL ++TAG Sbjct: 188 DGARFEPLIGNPG--DGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWAITTAGY 245 Query: 235 NLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKT 294 N+ Y + + + +LN V + F +D ++ D KA P + +R Sbjct: 246 NIEGPCYDKRREVIEMLNGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNIGVSVYRDF 305 Query: 295 ILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV---ITPMPNINGK 351 +L + I + G K+ N+W A R + ++ W+ + G+ Sbjct: 306 LLSQQQRAINNARHAGV----FKTKHLNVWVAART-AFFNLVSWQNCEDKTLTLELFEGQ 360 Query: 352 DVYIGVDLSRLDDLTSVGFIFPND-DKKVFLHSHS------FIGLRTNLEQKSKRDKINY 404 + DL+R D+ S+ +F + D K +S + + + + + + +R + Sbjct: 361 PCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTAERF 420 Query: 405 ELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLN-VQAVCYDPWNAQSFITTIESM 463 + +E G T +D +DY+ +++ + + LN V DP+ A + Sbjct: 421 QKWVEMG--FLTVTDGAEVDYRYILE---EAKAANKLNPVSESPIDPFGATGLSHDLADE 475 Query: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAV--LIRDGEDNVK 521 L+ + + Q++ +S +KE + R H+ N ++T + N V I +D VK Sbjct: 476 NLN--PVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVK 533 Query: 522 INKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYES 559 K+ KID +++I A A ++E ++ ++ ES Sbjct: 534 PIKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIES 571 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 160 bits (406), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 146/547 (26%), Positives = 259/547 (47%), Gaps = 30/547 (5%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DNHLSNKAIKFVEML--PD 60 T YA++V G+I S + C+RHL ++EN G W D L+++ I+F+E P Sbjct: 15 TTWYAEQVTQGKIKTSKYVRKECERHLRYLEN---GGKWVFDEELAHRPIRFIEKFCKPS 71 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + + + L +Q FI+GSL+GW + + R F +A I M RK GK+ +SG V Sbjct: 72 KGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISG--VANYAV 129 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSV 178 Q + +I++ ++ KQA+ +F + + K R D +I + S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD----EIHYDATISK 185 Query: 179 FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS 238 P +++ D +DG + + I DE+ D ++ S K + PL + ++TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 239 QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN 298 + + + L++ + + F Y A +D +++ D + WIKA P L + + + Sbjct: 246 PLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEE 305 Query: 299 VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQ--VITPMPNINGKDVYIG 356 + + E+G + K FN++ E S +D ++ I + + G+ IG Sbjct: 306 WEKAKRTPAERG----DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIG 361 Query: 357 VDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS +D T+ F D+ KV + SHS+I + +E + +KI Y E G T Sbjct: 362 YDLSETEDFTAACATFALDNGKVAVLSHSWIP-KHKVEYSN--EKIPYREWEEDG--LLT 416 Query: 417 QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSF 476 D IDY+ V+++I+K + H + V+ + YD NA +++ + E Q Sbjct: 417 VQDKPYIDYQDVLNWIIK-MNEHYV-VEKITYDRANAFKLNQELKNYGFETE--ETRQGA 472 Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIIS 536 LS ++K+ + D +I N+N L+ +NN L D N +K+ +KID + Sbjct: 473 LTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAA 532 Query: 537 IITAFTE 543 + +T+ Sbjct: 533 FLNTYTD 539 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 160 bits (405), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 146/547 (26%), Positives = 259/547 (47%), Gaps = 30/547 (5%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DNHLSNKAIKFVEML--PD 60 T YA++V G+I S + C+RHL ++EN G W D L+++ I+F+E P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLEN---GGKWVFDEELAHRPIRFIEKFCKPS 71 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + + + L +Q FI+GSL+GW + + R F +A I M RK GK+ +SG V Sbjct: 72 KGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISG--VANYAV 129 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSV 178 Q + +I++ ++ KQA+ +F + + K R D +I + S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD----EIHYDATISK 185 Query: 179 FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS 238 P +++ D +DG + + I DE+ D ++ S K + PL + ++TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 239 QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN 298 + + + L++ + + F Y A +D +++ D + WIKA P L + + + Sbjct: 246 PLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEE 305 Query: 299 VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQ--VITPMPNINGKDVYIG 356 + + E+G + K FN++ E S +D ++ I + + G+ IG Sbjct: 306 WEKAKRTPAERG----DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIG 361 Query: 357 VDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS +D T+ F D+ KV + SHS+I + +E + +KI Y E G T Sbjct: 362 YDLSETEDFTAACATFALDNGKVAVLSHSWIP-KHKVEYSN--EKIPYREWEEDG--LLT 416 Query: 417 QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSF 476 D IDY+ V+++I+K + H + V+ + YD NA +++ + E Q Sbjct: 417 VQDKPYIDYQDVLNWIIK-MNEHYV-VEKITYDRANAFKLNQELKNYGFETE--ETRQGA 472 Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIIS 536 LS ++K+ + D +I N+N L+ +NN L D N +K+ +KID + Sbjct: 473 LTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAA 532 Query: 537 IITAFTE 543 + +T+ Sbjct: 533 FLNTYTD 539 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 160 bits (405), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 146/547 (26%), Positives = 259/547 (47%), Gaps = 30/547 (5%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DNHLSNKAIKFVEML--PD 60 T YA++V G+I S + C+RHL ++EN G W D L+++ I+F+E P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLEN---GGKWVFDEELAHRPIRFIEKFCKPS 71 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + + + L +Q FI+GSL+GW + + R F +A I M RK GK+ +SG V Sbjct: 72 KGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISG--VANYAV 129 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSV 178 Q + +I++ ++ KQA+ +F + + K R D +I + S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD----EIHYDATISK 185 Query: 179 FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS 238 P +++ D +DG + + I DE+ D ++ S K + PL + ++TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 239 QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN 298 + + + L++ + + F Y A +D +++ D + WIKA P L + + + Sbjct: 246 PLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEE 305 Query: 299 VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQ--VITPMPNINGKDVYIG 356 + + E+G + K FN++ E S +D ++ I + + G+ IG Sbjct: 306 WEKAKRTPAERG----DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIG 361 Query: 357 VDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS +D T+ F D+ KV + SHS+I + +E + +KI Y E G T Sbjct: 362 YDLSETEDFTAACATFALDNGKVAVLSHSWIP-KHKVEYSN--EKIPYREWEEDG--LLT 416 Query: 417 QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSF 476 D IDY+ V+++I+K + H + V+ + YD NA +++ + E Q Sbjct: 417 VQDKPYIDYQDVLNWIIK-MNEHYV-VEKITYDRANAFKLNQELKNYGFETE--ETRQGA 472 Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIIS 536 LS ++K+ + D +I N+N L+ +NN L D N +K+ +KID + Sbjct: 473 LTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAA 532 Query: 537 IITAFTE 543 + +T+ Sbjct: 533 FLNTYTD 539 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 160 bits (405), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 146/547 (26%), Positives = 260/547 (47%), Gaps = 30/547 (5%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DNHLSNKAIKFVEML--PD 60 T YA++V G+I S + C+RHL ++EN G W D L+++ I+F+E P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLEN---GGKWVFDEELAHRPIRFIEKFCKPS 71 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + + + L +Q FI+GSL+GW + + R F +A I M RK GK+ +SG V Sbjct: 72 KGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISG--VANYAV 129 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSV 178 Q + +I++ ++ KQA+ +F + M S +RE + +I + S Sbjct: 130 SQDGENGAEIHLLANVMKQARILF----DESKAMIKASPKLRENFRPLRDEIHYDATISK 185 Query: 179 FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS 238 P +++ D +DG + + I DE+ D ++ S K + PL + ++TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 239 QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN 298 + + + L++ + + F Y A +D +++ D + WIKA P L + + Sbjct: 246 PLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEE 305 Query: 299 VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQ--VITPMPNINGKDVYIG 356 + + E+G + K FN++ E S +D ++ I + + G+ IG Sbjct: 306 WEKAKRTPAERG----DFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIG 361 Query: 357 VDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS +D T+ F D+ KV + +HS+I + +E + +KI Y E G T Sbjct: 362 YDLSETEDFTAACATFALDNGKVAVLTHSWIP-KHKVEYSN--EKIPYREWEEDG--LLT 416 Query: 417 QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSF 476 D IDY+ V+++I+K + H + V+ + YD NA +++ + E Q Sbjct: 417 IQDKPYIDYQDVLNWIIK-MNEHYV-VEKITYDRANAFKLNQELKNYGFETE--ETRQGA 472 Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIIS 536 LS ++K+ + D +I N+N L+ +NN L D N +K+ +KID + Sbjct: 473 LTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAA 532 Query: 537 IITAFTE 543 + +T+ Sbjct: 533 FLNTYTD 539 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 158 bits (399), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 143/547 (26%), Positives = 253/547 (46%), Gaps = 30/547 (5%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DNHLSNKAIKFVEML--PD 60 T YA++V G+I S + C+RHL ++EN G W D L+++ I+F+E P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLEN---GGKWVFDEELAHRPIRFIEKFCKPS 71 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 + + + L +Q FI+GSL+GW + + R F +A I M RK GK+ +SG V Sbjct: 72 KGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISG--VANYAV 129 Query: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSV 178 Q + +I++ ++ KQA+ +F + M S +RE + +I + S Sbjct: 130 SQDGENGAEIHLLANVMKQARILF----DESKAMIKASPKLRENFRPLRDEIHYDATISK 185 Query: 179 FAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS 238 P +++ D +DG + + I DE+ D ++ S K + PL + ++TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 239 QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN 298 + + + L+ + + F Y A +D +++ D + WIKA P L L Sbjct: 246 PLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGV----SIDLDE 301 Query: 299 VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNINGKDVYIG 356 +K + + + K FN++ E S +D ++ I + + G+ IG Sbjct: 302 MKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIG 361 Query: 357 VDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETT 416 DLS +D T+ F D+ KV + +HS+I K I +E + T Sbjct: 362 YDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIPYIEWE-----EDGLLT 416 Query: 417 QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSF 476 D+ IDY+ V+++I+K + H + V+ + YD NA +++ + E Q Sbjct: 417 IQDNPYIDYQDVLNWIIK-MNEHYV-VEKITYDRANAFKLNQELKNYGFETE--ETRQGA 472 Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIIS 536 LS ++K+ + D +I N+N L+ +NN L D N +K+ +KID + Sbjct: 473 LTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAA 532 Query: 537 IITAFTE 543 + +T+ Sbjct: 533 FLNTYTD 539 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 156 bits (394), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 139/577 (24%), Positives = 262/577 (45%), Gaps = 44/577 (7%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCH---WDNHLSNKAIKFVEMLPDPKT 63 +YA+ VV G+I + C+RHL +EN + +D + + KF+++LP K Sbjct: 8 QYARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKG 67 Query: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 P+ L +Q F + ++GW ++ R F +AY + RK GKS + +G+ + Sbjct: 68 EWAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGL--Y 125 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREK--TDVRKTDIEDVL 174 +F +F ++Y ++T KQA +F+ A LM +++ +RE +V + Sbjct: 126 MFACDDEFGAEVYSGATTEKQAWEVFRPA----RLMAQRTEPLREAFGIEVHAQSMSRPE 181 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 + F PL +P DG P+ A++DE D +Y +TGM ++ PL ++TAG Sbjct: 182 DGARFEPLIGDPG--DGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGY 239 Query: 235 NLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKT 294 N+ Y + + + +L V D F +D ++ D KA P + + Sbjct: 240 NIEGPCYDKRREVIEMLEGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNMGISVYSDY 299 Query: 295 ILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV---ITPMPNINGK 351 +L +A I + + G K+ N+W A + D+ ++ +W++ + G Sbjct: 300 LLSQQRAAINNPRKVGV----FKTKHLNIWVAAK-DAFFNLVNWQKCEDRSLTLERFEGH 354 Query: 352 DVYIGVDLSRLDDLTSVGFIFPND-DKKVFLHSHS---FIGLRT--NLEQKSKRDKINYE 405 + DL+R DL ++ +F + D K + + F+ T + + R Y+ Sbjct: 355 TCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAERYQ 414 Query: 406 LAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLN-VQAVCYDPWNAQSFITTIESMA 464 +E G T +D IDY+++++ + + LN V+ DP A + + Sbjct: 415 KWVEGG--FITVTDGAEIDYREILESAKE---ANRLNAVEESPIDPHGATNLSHHLADEN 469 Query: 465 LDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAV--LIRDGEDNVKI 522 L+ I + Q++ +S +KE + R H+ N ++T ++N + I +D V+ Sbjct: 470 LN--PITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRP 527 Query: 523 NKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYES 559 K+ N KID +++I A + E ++ ++ ES Sbjct: 528 IKQGNENKIDGAVALIMAIGRCMLFEKEDTLSDHIES 564 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 139/566 (24%), Positives = 249/566 (43%), Gaps = 50/566 (8%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 Query: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Q + L +QKF + + +GW +R R F ++Y + RK GKS+I +G+ + Sbjct: 73 EWAFRKQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMF 132 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 + +F ++Y ++T KQA +F+ A V RS + +V +++ Sbjct: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPARLMVK--RSPELIVAADIEVNASNMNKPEDG 188 Query: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 S F PL NP DG P+ +I+DE +Y TGM ++ PL +++TAG N+ Sbjct: 189 SRFEPLIGNPG--DGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 Query: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 + + + + +L V D F + +D ++ D KA P + ++ Sbjct: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGI-----SVY 301 Query: 297 QNVKADIQDELEKGTSYHKIL-IKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKD 352 Q+ Q K + K+ N+W + + ++ DW E + G+D Sbjct: 302 QDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQD 360 Query: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERG 411 + +D++R DL S+ +F +D + H F + R + +++ R+ N +A ER Sbjct: 361 CVLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEETVRNTENRRMA-ERY 416 Query: 412 EAETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIES 462 +A Q +D IDY+ +++ D N VQ DP A + +E Sbjct: 417 QAWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLED 470 Query: 463 MALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNV 520 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V Sbjct: 471 EGLT--PVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVV 528 Query: 521 KINKKMNRQKIDPIISIITAFTEARM 546 + K+ N KID +++I A A + Sbjct: 529 RPIKQGNDNKIDGAVALIMAIGRAML 554 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 150 bits (379), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 131/563 (23%), Positives = 252/563 (44%), Gaps = 44/563 (7%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDPKT 63 ++A+ VV G++ A I C+RHL + + +D + K ++ +++LP K Sbjct: 14 QFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHTKG 73 Query: 64 -----NQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Q + L +Q F + +GW R + +R F ++Y + RK GKS+I +G+ + Sbjct: 74 EWAYKRQLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGI--A 131 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREK--TDVRKTDIEDVL 174 +F +F ++Y ++T +QA +F+ A LM +S + E +V + Sbjct: 132 MFTADDEFGAEVYCGATTERQAWEVFRPA----RLMVKRSPLLIEHLGIEVNAQALNRPE 187 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 S F P+ NP DG P+ AI DE + Y TGM ++ PL +++TAG Sbjct: 188 DGSRFEPIIGNPG--DGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGA 245 Query: 235 NLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKT 294 N+ Y + + + +L V D F + +D ++ D KA P + +++ Sbjct: 246 NIEGPCYDKRRQVIEMLEGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIGISVYQEY 305 Query: 295 ILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGK 351 + ++ Q ++ + K+ N+W + + ++ DW E + G+ Sbjct: 306 L----ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKACEDRSLSLEQFEGQ 360 Query: 352 DVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIER 410 D + +D++R DL S+ +F D + H F + R + + + R+ N +A ER Sbjct: 361 DCVLALDMARKLDLNSMARLFWRD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ER 416 Query: 411 GEAETT-----QSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL 465 +A ++D IDY+++++ + VQ DP A + + L Sbjct: 417 YQAWVNHGFLIETDGAEIDYREILEEAKE--ANRRCPVQCTPLDPHGATNLSHQLADEGL 474 Query: 466 DWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVKIN 523 + + Q++ +S +KE + R H+ N ++T ++N + + +D V+ Sbjct: 475 T--PVTIVQNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPV 532 Query: 524 KKMNRQKIDPIISIITAFTEARM 546 K+ N KID +++I A A + Sbjct: 533 KQGNDNKIDGAVALIMAVGRAML 555 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 Query: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 Query: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 Query: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 Query: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 Query: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 Query: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 Query: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 Query: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 K+ N KID +++I A A + + Sbjct: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 125/512 (24%), Positives = 239/512 (46%), Gaps = 36/512 (7%) Query: 54 FVEMLPDPKTNQPMPLMEFQKFIVGSLYGW----RRGQ-YRMFTKAYISMARKQGKSLIV 108 F+ + P Q M L ++ F+ ++YGW +G+ R+ ++Y+ + +K GK++I Sbjct: 61 FIRHVKGPLAGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTIIA 120 Query: 109 SGMSVNELLFGQYPKF--NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVR 166 +G LL+ Y + Y A+S Y+QAQ + +Q + ++ + V Sbjct: 121 AG----ALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEPLARHTQIYKGVN 176 Query: 167 KT--------DIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGM 218 T I + + F L+ N ++GK+P + DEL + + +MY K+ Sbjct: 177 GTVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQ 236 Query: 219 TLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETK 278 ++ P+ L +STAG +S + YKY K +L E D+ FV E + + +D Sbjct: 237 ISREQPMMLNISTAGKGASSVGMRVYKYAKLVL-ENDDDDSLFVAIWEPNKNYDWEDRKV 295 Query: 279 WIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW 338 W P + ++ ++ + + + S + L K+ N++ D+ + Sbjct: 296 WKMVNPNIGV----SVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVF-VNGADNYFEHDQV 350 Query: 339 EQVITP-MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDD---KKVFLHSHSFIGLRTNLE 394 + V+ + ++ G+ Y+G+DLS+ DLT V FP+ D + + + N++ Sbjct: 351 QHVLVKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNENID 410 Query: 395 QKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQ 454 K K D + Y +ERG A T D MID Q++++IV+ + +D VQ + YDP +Q Sbjct: 411 FKEKEDNVPYTDMVERGFA--TFCDGKMIDQDQIMEYIVECMDLYD--VQQINYDPAMSQ 466 Query: 455 SFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIR 514 I +E++ L+ I V Q ++ + + + + ++R+ DN L N V++ Sbjct: 467 KLIEKLENLGLE--CIAVNQYPNVMNAMLDDSEILIYEKRLI-TDNPLFVYCALNVVVVT 523 Query: 515 DGEDNVKINKKMNRQKIDPIISIITAFTEARM 546 + +K+ +++KID ++ + A E M Sbjct: 524 NINGMKAPSKRQSKKKIDGFVAFLCAHKETMM 555 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 149 bits (377), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 132/567 (23%), Positives = 249/567 (43%), Gaps = 45/567 (7%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 +YA+ VV G+I+A IQ C+RHL M + D L+ + KF+++LP K Sbjct: 14 QYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKG 73 Query: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 P+ L +Q F++ +GW + + R F + Y + RK GKS I +G+++ Sbjct: 74 EWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVAL--Y 131 Query: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREK--TDVRKTDIEDVL 174 F +F ++Y ++T KQA +F+ A LM ++ + E +V +++ Sbjct: 132 CFACDNEFGAEVYSGATTEKQAWEVFRPA----RLMCKRTPMLTEAFGIEVNASNMNRPE 187 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 + F PL NP DG P A++DE D +Y+ TGM ++ PL ++TAG Sbjct: 188 DGARFEPLIGNPG--DGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGY 245 Query: 235 NLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKT 294 N+ Y + + + +LN V D F +D ++ D KA P + +R+ Sbjct: 246 NIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREF 305 Query: 295 ILQNVKADIQDELEKGTSYHKIL-IKNFNLWQAQREDSLLDISDWEQV---ITPMPNING 350 +L Q + + K+ N+W + R + ++ W+ + G Sbjct: 306 LLSQ-----QQRAKNNARLANVFKTKHLNIWVSAR-SAYFNLVSWQSCEDKSLTLEQFEG 359 Query: 351 KDVYIGVDLSRLDDLTSVGFIFPND-DKKVFLHSHS------FIGLRTNLEQKSKRDKIN 403 + + DL+R D+ S+ ++ + D K +S + + + + + + +R Sbjct: 360 QPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAER 419 Query: 404 YELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESM 463 ++ +E G T +D +DY+ +++ ++ + DP+ A + Sbjct: 420 FQKWVEMG--VLTVTDGAEVDYRYILEEAKAANKISPVSESPI--DPFGATGLSHDLADE 475 Query: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 L+ + + Q+F +S +KE + R H+ N ++T + N V + +D VK Sbjct: 476 DLN--PVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVK 533 Query: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 K+ KID +++I A + E Sbjct: 534 PVKEQAENKIDGAVALIMTIGRAMLKE 560 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 138 bits (348), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 125/506 (24%), Positives = 226/506 (44%), Gaps = 39/506 (7%) Query: 50 KAIKFVE---MLPDPK-TNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKS 105 + I F+E ++P+ K QPM L FQK + ++Y G A +S+ARK GK+ Sbjct: 6 RVIAFIERFCIVPEGKLIGQPMRLDTFQKEFILAVYDNPAGT----DMAILSIARKNGKT 61 Query: 106 LIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDV 165 +++G+ + L+ G N QI + + +QA +F +A + VNL + + Sbjct: 62 GLIAGILLAHLV-GPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITPSG 120 Query: 166 RKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKN 223 +K + + + + LS G P +AILDE + P D+ T +N Sbjct: 121 KK--LIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHEN 178 Query: 224 PLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCA--EMDSQEEVQDETKWIK 281 PL +++ST Q + + +++ V++ + + C E ++ W+ Sbjct: 179 PLLIVIST-------QAANDADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKRESWLA 231 Query: 282 AMPLLESKEHRKTILQNVKADIQDELEKGTSYHKI--LIKNFNLWQ-AQREDSLLDISDW 338 A P L + K D+ + EK +N NL Q + S W Sbjct: 232 ANPALGTFRSEK--------DMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISRSVW 283 Query: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSK 398 E + MP + Y G+DLS +DLT++ I D V+ F + LE+++K Sbjct: 284 E-LCGEMPINTPRKWYAGLDLSARNDLTAL-VIAGEADDGVWDVFPFFWTPQKTLEERTK 341 Query: 399 RDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFIT 458 D+ Y++ + G TT S +DY V+ I + I D ++ ++ +D W F Sbjct: 342 TDRAPYDVWVREGLLRTTPGAS--VDYSFVVADIAEII--GDFDLTSIAFDRWRIDQFRK 397 Query: 459 TIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGED 518 +++ L PL+E GQ FK + ++ + + R++H + +LT NAV+++D Sbjct: 398 DADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAG 457 Query: 519 NVKINKKMNRQKIDPIISIITAFTEA 544 N K++K +ID ++++ + A Sbjct: 458 NRKLDKSKATGRIDGMVAMTMSVGAA 483 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 137 bits (345), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 127/506 (25%), Positives = 224/506 (44%), Gaps = 39/506 (7%) Query: 50 KAIKFVE---MLPDPK-TNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKS 105 + I F+E ++P+ K QPM L FQK + ++Y G A +S+ARK GK+ Sbjct: 6 RVIAFIERFCIVPEGKLIGQPMRLDPFQKDFILAVYDNPAGT----DMAILSIARKNGKT 61 Query: 106 LIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDV 165 +++G+ + L+ G N QI + + +QA +F +A + VNL + + Sbjct: 62 GLIAGILLAHLV-GPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITPSG 120 Query: 166 RKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKN 223 +K + + + + LS G P +AILDE + P D+ T +N Sbjct: 121 KK--LIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHEN 178 Query: 224 PLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCA--EMDSQEEVQDETKWIK 281 PL +++ST Q + + +++ V++ + + C E ++ W+ Sbjct: 179 PLLIVIST-------QAANDADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKRESWLA 231 Query: 282 AMPLLESKEHRKTILQNVKADIQDELEKGTSYHKI--LIKNFNLWQ-AQREDSLLDISDW 338 A P L + K D+ + EK +N NL Q + S W Sbjct: 232 ANPALGTFRSEK--------DMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISRSVW 283 Query: 339 EQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSK 398 E + MP + Y G+DLS +DLT++ I D V+ F + LE+++K Sbjct: 284 E-LCGEMPINTPRKWYAGLDLSARNDLTAL-VIAGEADDGVWDVFPFFWTPQKTLEERTK 341 Query: 399 RDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFIT 458 D+ Y++ + G TT S +DY V+ I + I DL A +D W F Sbjct: 342 TDRAPYDVWVREGLLRTTPGAS--VDYSFVVADIAEIIGDFDLTSMA--FDRWRIDQFRK 397 Query: 459 TIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGED 518 +++ L PL+E GQ FK + ++ + + R++H + +LT NAV+++D Sbjct: 398 DADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAG 457 Query: 519 NVKINKKMNRQKIDPIISIITAFTEA 544 N K++K +ID ++++ + A Sbjct: 458 NRKLDKSKATGRIDGMVAMTMSVGAA 483 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 122 bits (307), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 134/568 (23%), Positives = 244/568 (42%), Gaps = 54/568 (9%) Query: 2 TDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW----DNHLSNKAIKFVEM 57 +D +YA VV G I+A C+R L+ ++ + W D +++A+KF+++ Sbjct: 4 SDIARQYASDVVGGAIVACRYVALACQRFLNDLDRQSDD-DWPYVFDEAKADRAVKFMQL 62 Query: 58 LPDPK-----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSG 110 +P K + + +Q FI +++GW R R F +AY + RK GKS ++ Sbjct: 63 MPHTKGKWSASKSKLVFEPWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAA 122 Query: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFK----MASQQVNLMRSKSKFIREKTDVR 166 + LF + ++Y ++T KQA +F+ MA + NL +++F E + + Sbjct: 123 RGI--YLFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENL---RNRFGIELSGNQ 177 Query: 167 KTD-----IEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQ 221 K +ED+ S F + NP DG P A++DE D + +TGM + Sbjct: 178 KNPGPMFVMEDM---SKFETVIGNPG--DGASPHAALVDEYHEHDTDALVDTMQTGMGAR 232 Query: 222 KNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIK 281 + PL +++TAG NL +++ + + RIL + + F +D + D IK Sbjct: 233 EQPLLSIITTAGSNLGGPCHEKRRDVIRILEGQTIDETIFGIIYTIDEDDPWDDPASLIK 292 Query: 282 AMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV 341 A P +L A +Q + + K+ N W R +++ W++ Sbjct: 293 ANPNYGVSVFPDFLL----AQLQQAKRSASKQNAFRTKHLNQWVGART-VWMNMLAWQRQ 347 Query: 342 IT--PMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKR 399 + ++ G ++ +DL+ D+ ++ +F + F F E+ K Sbjct: 348 KRDFTIADMAGCRCWMALDLASKKDVAALVMLF--EKAGQFYCIPRFYAPEAAAEENEKY 405 Query: 400 DKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITT 459 N+ L E + M DY + I+ DL Q +D W A IT Sbjct: 406 Q--NFAL-----EGHLVLTPGSMTDYAFIEADILDLAKQIDL--QDAAFDDWQANYLITR 456 Query: 460 IESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDN 519 + + ++ P+++ Q+ K +S +KE V + H+ N ++T + N D ++N Sbjct: 457 LSNTSI--PVVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKEN 514 Query: 520 V---KINKKMNRQKIDPIISIITAFTEA 544 + K N KID +++I A A Sbjct: 515 IYPRKENDNDPNCKIDGPVTLIMAMGRA 542 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 117 bits (294), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 Query: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 Query: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 Query: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 Query: 461 ESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 Query: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 +++K + KID + +II AF + M+ F++ Sbjct: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 105 bits (263), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 135/571 (23%), Positives = 249/571 (43%), Gaps = 45/571 (7%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE------ 56 D V +YAK +V G +A + IQ KR +ENP ++ + I+ +E Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENPK--YDFNPREAEFVIQIIEKTFVHD 65 Query: 57 ----MLPDPKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSG 110 + P +P L +QKFI+ +L G+ + + R F +A+I + RK GK+ +++ Sbjct: 66 QGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAA 125 Query: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 ++ L + + +IY+ S+ +Q+ F+ + M + F R + ++ I Sbjct: 126 LAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNF-RILNNNQENSI 182 Query: 171 EDVLS--SSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLL 228 S S L+ NPD D + V I DE+ + + Y+ K M N L + Sbjct: 183 SGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIG 242 Query: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQ-DETKWI---KAMP 284 ++TAGD++ S YQ +Y K+IL+E V + YFV+ + D E + D T I KA P Sbjct: 243 ITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANP 302 Query: 285 LLESKEHRKTIL------QNVKADIQDELEKGTS-YHKILIKNFNLWQAQREDSLLDISD 337 I+ QN +D L K + Y + FN+ + ++ D D Sbjct: 303 NYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKY---D 359 Query: 338 WEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKS 397 W I + + G D + G DLS+L DLT+ ++ N + +H++ + + Sbjct: 360 W--TIEQLAKL-GIDWFGGADLSKLHDLTAAA-LYGNYNGVDIAITHAWFPI---VAATR 412 Query: 398 KRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFI 457 K ++ N L R + T +++ +++ V+ + + + ++ V +D + F Sbjct: 413 KAEEDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWF-ETMRAKGFKIKQVGFDRKFGREFF 471 Query: 458 TTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGE 517 ++ + +++ Q + S+ + V D + + + V N I + Sbjct: 472 MAMKQKRFN--IVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTD 529 Query: 518 DNVKINKKMNRQKIDPIISIITAFTEARMHE 548 D ++ K ++ +ID I T F RM E Sbjct: 530 DMIQFEKIEDKHRID--IFDATVFAAIRMLE 558 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 105 bits (262), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 135/571 (23%), Positives = 249/571 (43%), Gaps = 45/571 (7%) Query: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE------ 56 D V +YAK +V G +A + IQ KR +ENP ++ + I+ +E Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENPK--YDFNPREAEFVIQIIEKTFVHD 65 Query: 57 ----MLPDPKTNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSG 110 + P +P L +QKFI+ +L G+ + + R F +A+I + RK GK+ +++ Sbjct: 66 QGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAA 125 Query: 111 MSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDI 170 ++ L + + +IY+ S+ +Q+ F+ + M + F R + ++ I Sbjct: 126 LAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNF-RILNNNQENSI 182 Query: 171 EDVLS--SSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLL 228 S S L+ NPD D + V I DE+ + + Y+ K M N L + Sbjct: 183 SGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIG 242 Query: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQ-DETKWI---KAMP 284 ++TAGD++ S YQ +Y K+IL+E V + YFV+ + D E + D T I KA P Sbjct: 243 ITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANP 302 Query: 285 LLESKEHRKTIL------QNVKADIQDELEKGTS-YHKILIKNFNLWQAQREDSLLDISD 337 I+ QN +D L K + Y + FN+ + ++ D D Sbjct: 303 NYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKY---D 359 Query: 338 WEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKS 397 W I + + G D + G DLS+L DLT+ ++ N + +H++ + + Sbjct: 360 W--TIEQLAKL-GIDWFGGADLSKLHDLTAAA-LYGNYNGVDIAITHAWFPI---VAATR 412 Query: 398 KRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFI 457 K ++ N L R + T +++ +++ V+ + + + ++ V +D + F Sbjct: 413 KAEEDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWF-ETMRAKGFKIKQVGFDRKFGREFF 471 Query: 458 TTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGE 517 ++ + +++ Q + S+ + V D + + + V N I + Sbjct: 472 MAMKQKRFN--IVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTD 529 Query: 518 DNVKINKKMNRQKIDPIISIITAFTEARMHE 548 D ++ K ++ +ID I T F RM E Sbjct: 530 DMIQFEKIEDKHRID--IFDATVFAAIRMLE 558 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 104 bits (260), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 111/452 (24%), Positives = 202/452 (44%), Gaps = 29/452 (6%) Query: 98 MARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSK 157 M RK GK+ +SG V Q + +I++ ++ KQA+ +F + M S Sbjct: 1 MGRKNGKTTTISG--VANYAVSQDGENGAEIHLLANVMKQARILF----DESKAMIKASP 54 Query: 158 FIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTG 217 +RE + +I + S P +++ D +DG + + I DE+ D ++ S K Sbjct: 55 KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 114 Query: 218 MTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDET 277 + PL + ++TAG L+ + + + L+ + + F Y A +D +++ D + Sbjct: 115 RAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSS 174 Query: 278 KWIKAMPLLESKEHRKTILQNVKADIQDELEKGT----SYHKILIKNFNLWQAQREDSLL 333 WIKA P L + A++++E EK + K FN++ E S + Sbjct: 175 NWIKANPNLG--------VSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFI 226 Query: 334 DISDWEQV--ITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRT 391 D ++ I + + G+ IG DLS +D T+ F D+ KV + +HS+I Sbjct: 227 DYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHK 286 Query: 392 NLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPW 451 K I +E + T D+ IDY+ V+++I+K + H + V+ + YD Sbjct: 287 VEYSNEKIPYIEWE-----EDGLLTIQDNPYIDYQDVLNWIIK-MNEHYV-VEKITYDRA 339 Query: 452 NAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAV 511 NA +++ + E Q LS ++K+ + D +I N+N L+ +NN Sbjct: 340 NAFKLNQELKNYGFETE--ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 397 Query: 512 LIRDGEDNVKINKKMNRQKIDPIISIITAFTE 543 L D N +K+ +KID + + +T+ Sbjct: 398 LKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTD 429 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 101 bits (251), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 127/560 (22%), Positives = 247/560 (44%), Gaps = 51/560 (9%) Query: 4 YVTKYAKKVVSGEILASLKNIQV---CKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 YV +Y G+I+ + + I + ++H+ ++ ++D IKF+E Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDD----VYFDEQKIEDCIKFIE---- 57 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMARKQGKSLIVSGMS--VNELL 117 P + FQ+FI+ +++ + FT+ I M R GK+ ++S +S ++ L Sbjct: 58 ---KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPL 114 Query: 118 FG--QYPKFNRQIYVASSTYKQAQTIF-KMASQQVNLMRSKS-KFIREKTDVRKTDIEDV 173 G +Y I + +++ QA+T F ++ + ++ R+K+ K + +V K I + Sbjct: 115 HGVKEY-----HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINR 169 Query: 174 LSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 + SV ++N DG I DE+ EM + + G+ +KN T +ST G Sbjct: 170 ATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDG 229 Query: 234 DNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEH 291 + I +L+ +V+ F + ++D +EV D W KA P+L E+ Sbjct: 230 FVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEY 289 Query: 292 RKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---MPNI 348 KT+L ++ + D ++ + + K NL + E I+ W++++ +PN+ Sbjct: 290 AKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKV---IAPWKEILATNREIPNL 346 Query: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 + + G+D + + D SVG +F +D ++L HSF+ ++ D + E I Sbjct: 347 DNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-------RQGFLDDVKLEPPI 398 Query: 409 ERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALD 466 + E T D +I+ + ++D+ +K ++ V D + E + Sbjct: 399 KEWEKMGLLTIVDDDVIEIEYIVDWFLK--AREKYGLEKVIADNYRTDIVRRAFEDAGIK 456 Query: 467 WPLIEVGQSFKALSQSIK-EFRMWVADERIQHNDNMLLTTSVNN-AVLIRDGEDNVKINK 524 +EV ++ KA+ + A + + DN L+ NN AV ++ + I K Sbjct: 457 ---LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKK 513 Query: 525 KMNRQKIDPIISIITAFTEA 544 NR+K D ++ + A A Sbjct: 514 DENRRKTDGFMAFVHALYRA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 101 bits (251), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 127/560 (22%), Positives = 247/560 (44%), Gaps = 51/560 (9%) Query: 4 YVTKYAKKVVSGEILASLKNIQV---CKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 YV +Y G+I+ + + I + ++H+ ++ ++D IKF+E Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDD----VYFDEQKIEDCIKFIE---- 57 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMARKQGKSLIVSGMS--VNELL 117 P + FQ+FI+ +++ + FT+ I M R GK+ ++S +S ++ L Sbjct: 58 ---KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPL 114 Query: 118 FG--QYPKFNRQIYVASSTYKQAQTIF-KMASQQVNLMRSKS-KFIREKTDVRKTDIEDV 173 G +Y I + +++ QA+T F ++ + ++ R+K+ K + +V K I + Sbjct: 115 HGVKEY-----HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINR 169 Query: 174 LSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 + SV ++N DG I DE+ EM + + G+ +KN T +ST G Sbjct: 170 ATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDG 229 Query: 234 DNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEH 291 + I +L+ +V+ F + ++D +EV D W KA P+L E+ Sbjct: 230 FVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEY 289 Query: 292 RKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---MPNI 348 KT+L ++ + D ++ + + K NL + E I+ W++++ +PN+ Sbjct: 290 AKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKV---IAPWKEILATNREIPNL 346 Query: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 + + G+D + + D SVG +F +D ++L HSF+ ++ D + E I Sbjct: 347 DNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-------RQGFLDDVKLEPPI 398 Query: 409 ERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALD 466 + E T D +I+ + ++D+ +K ++ V D + E + Sbjct: 399 KEWEKMGLLTIVDDDVIEIEYIVDWFLK--AREKYGLEKVIADNYRTDIVRRAFEDAGIK 456 Query: 467 WPLIEVGQSFKALSQSIK-EFRMWVADERIQHNDNMLLTTSVNN-AVLIRDGEDNVKINK 524 +EV ++ KA+ + A + + DN L+ NN AV ++ + I K Sbjct: 457 ---LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKK 513 Query: 525 KMNRQKIDPIISIITAFTEA 544 NR+K D ++ + A A Sbjct: 514 DENRRKTDGFMAFVHALYRA 533 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 127/560 (22%), Positives = 246/560 (43%), Gaps = 51/560 (9%) Query: 4 YVTKYAKKVVSGEILASLKNIQV---CKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD 60 YV +Y G+I+ + + I + ++H+ ++ ++D IKF+E Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDD----VYFDEQKIEDCIKFIE---- 57 Query: 61 PKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMARKQGKSLIVSGMS--VNELL 117 P + FQ+FI+ +++ + FT+ I M R GK+ ++S +S ++ L Sbjct: 58 ---KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPL 114 Query: 118 FG--QYPKFNRQIYVASSTYKQAQTIF-KMASQQVNLMRSKS-KFIREKTDVRKTDIEDV 173 G +Y I + +++ QA+T F ++ + ++ R+K+ K + +V K I + Sbjct: 115 HGVKEY-----HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINR 169 Query: 174 LSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 + SV ++N DG I DE+ EM + + G+ +KN T +ST G Sbjct: 170 ATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDG 229 Query: 234 DNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEH 291 + I +L+ +V+ F + ++D +EV D W KA P+L E+ Sbjct: 230 FVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEY 289 Query: 292 RKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---MPNI 348 KT+L ++ + D ++ + + K NL + E I+ W++++ +PN+ Sbjct: 290 AKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKV---IAPWKEILATNREIPNL 346 Query: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 + + G+D + + D SVG +F +D ++L HSF+ ++ D + E I Sbjct: 347 DNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-------RQGFLDDVKLEPPI 398 Query: 409 ERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALD 466 + E T D +I+ + ++D+ +K ++ V D + E + Sbjct: 399 KEWEKMGLLTIVDDDVIEIEYIVDWFLK--AREKYGLEKVIADNYRTDIVRRAFEDAGIK 456 Query: 467 WPLIEVGQSFKALSQSIK-EFRMWVADERIQHNDNMLLTTSVNN-AVLIRDGEDNVKINK 524 +EV ++ KA+ + A + + DN L+ NN AV I+ + I K Sbjct: 457 ---LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKK 513 Query: 525 KMNRQKIDPIISIITAFTEA 544 R+K D ++ + A A Sbjct: 514 DEVRRKTDGFMAFVHALYRA 533 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 91.3 bits (225), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 113/488 (23%), Positives = 199/488 (40%), Gaps = 31/488 (6%) Query: 67 MPLMEFQKFIVGSLYGWRRGQYRMFTKAY-ISMARKQGKSLIVSGMSVNELLFGQYPKFN 125 PL ++KFI ++ + + +F + + I++ R GK+ +S +S N + + N Sbjct: 61 FPLDNWEKFIAPFIFLYFKEDDELFYEEFFITLGRGGGKNGFISTLS-NYFISPLHGINN 119 Query: 126 RQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNN 185 + V +++ QA+ FK + N + K + D K I ++SVF ++N Sbjct: 120 YDVSVVANSEDQAKVSFK---EVFNTIDGNPK-LEGSFDAWKAQIIGKATNSVFKFQTSN 175 Query: 186 PDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYK 245 DG I DE D ++ F G+ NP + T G + + Y + + Sbjct: 176 AKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNG-FVRAGFYDKLE 234 Query: 246 -YIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEHRKTILQNVKAD 302 K IL+ E D F + ++D EV++E W KA P E K +L V+ Sbjct: 235 ERSKAILSGENLNDRMFPFICKLDDPAEVKNEAMWEKANPAFEKPLSPRSKRLLNKVRKQ 294 Query: 303 IQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---MPNINGKDVYIGVDL 359 + + + K NL + E ++ WE ++ MP + + D Sbjct: 295 YEALTNNPSGREAFMTKRMNLPEVDLEKV---VAPWEDILATNREMPELQNRACIGAFDY 351 Query: 360 SRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAET--TQ 417 + + D +VG +F D ++ +HSF +K D N + I+ E + T Sbjct: 352 ASVKDFAAVGLLFRVGDDYIW-KTHSFA-------RKGYLDIANLKPPIKEWEKQGLLTI 403 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFK 477 D ID + V+++ V+ TH +Q V D + E+ + +I ++ Sbjct: 404 VDEPTIDPRHVVNWFVEMRETH--GIQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRA-- 459 Query: 478 ALSQSIKEFRMWVADERIQHNDNMLLTTSVNN-AVLIRDGEDNVKINKKMNRQKIDPIIS 536 A S A+ RI DN L+ NN AV I+ + + K +R+K D + Sbjct: 460 AHSLLAPRIETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLKKDEHRRKTDGFQA 519 Query: 537 IITAFTEA 544 + A A Sbjct: 520 FVHALWRA 527 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 90.1 bits (222), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 124/555 (22%), Positives = 241/555 (43%), Gaps = 41/555 (7%) Query: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKT 63 YVT+Y K+ +G+I+ + + + ++ N + ++D + F E Sbjct: 6 YVTQYIDKIKTGKIIVNKERQNLVDYLEKYILNR-DDLYFDFQKIEDYVGFSE------- 57 Query: 64 NQPMPLMEFQKFIVGSLYGWRRGQYR-MFTKAYISMARKQGKSLIVSGMSVNEL--LFGQ 120 + +FQKFI ++ + F++ +ISMAR GK+ +S + L L G Sbjct: 58 KWFFEIQDFQKFITCFVFLYEADTLTPYFSEFFISMARGGGKNGYISTLGAFFLTPLHG- 116 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-----DVRKTDIEDVLS 175 PK+N + V +++ KQAQ F+ + +++ S ++R+ ++ K IE + Sbjct: 117 IPKYN--MSVVANSEKQAQVSFQ---EIYDMIESNDLYVRKDKPNNPFNISKVLIEGISM 171 Query: 176 SSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDN 235 + F ++N DG DE+ + D + + ++G+ +P T + T G Sbjct: 172 KAQFVFDTSNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHV 231 Query: 236 LNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEHRK 293 + + + +L E D F + ++D +EE+ D W KA P+ E+ ++ + Sbjct: 232 REGFLDKLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGR 291 Query: 294 TILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---MPNING 350 + Q VK + + + K NL + DS ++ W+ ++ MP+++ Sbjct: 292 QLFQEVKQQYLSLKFNPSGRTEFMTKRMNLPET---DSQSVVAPWDDILATNRDMPSLDN 348 Query: 351 KDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIER 410 + G+D + L D +VG +F DD+ ++ +HSF + L++ + I +E A E+ Sbjct: 349 HECIGGLDYASLKDFAAVGLLFKVDDEYIW-KTHSF-ARKAFLDEYQLKPPI-HEWA-EK 404 Query: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLI 470 G T D I K +ID+ ++ ++ V D + E +D+ ++ Sbjct: 405 G--LLTIVDEPTISPKHIIDWFLE--AQKHYGLKKVIADNFRMDLLRPLFEENDIDYEVV 460 Query: 471 EVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMN-RQ 529 + ++ ++L E A + I DN L+ N + D N KK R+ Sbjct: 461 KNTRAIQSLLAPRVE--DMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEPVRR 518 Query: 530 KIDPIISIITAFTEA 544 K D ++I A A Sbjct: 519 KTDGFQALIHALYRA 533 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 84.7 bits (208), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 118/563 (20%), Positives = 233/563 (41%), Gaps = 68/563 (12%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTGNLMKIELLPTQ 70 Query: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 71 RW--------WYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILG- 121 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 Query: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 ++ + +K EE D F +++ E+V+D+ W A+PL+ S ++ Sbjct: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVI 295 Query: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 + EL +G + FN+ L + D TP + Sbjct: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 N Y+G+DLS + DLT+V F+ + K + H+ +F +R+ EQ + + Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEG-KTYSHTLTF-SVRSQYEQLDTEQQELWTEF 399 Query: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 ++RGE D+ I+ +I +I F T ++ + YDP + IE D Sbjct: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 Query: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 + G + +A+ Q IK + +A+ ++ HN ++ N AV I D + Sbjct: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLAENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 Query: 522 INKKMNRQKIDPIISIITAFTEA 544 KK+ + KIDP +++ A A Sbjct: 513 YTKKLEKDKIDPTVALTMALEMA 535 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 179/392 (45%), Gaps = 17/392 (4%) Query: 69 LMEFQKFIVGSLY-GWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQ 127 L FQKFI+ ++ + ++ K I M R GK+ ++SG+ + L+ + N Sbjct: 64 LENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGI-IAYLISPFHGIKNYN 122 Query: 128 IYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPD 187 + + +++ QA+T F + N + S K ++E K++I+ + ++SV ++N + Sbjct: 123 VSLVANSEDQAKTSF---DEIYNTVESNPK-LKEIYYNTKSEIKSIHTNSVMRFRTSNGN 178 Query: 188 AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYI 247 DG + + DE+ ++ K+G+ KN + T G + Sbjct: 179 TKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKA 238 Query: 248 KRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEHRKTILQNVKADIQD 305 K++L+ R ++ F + ++D + EV D+ KW KA P+ ++ + + V ++ Sbjct: 239 KKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQYEE 298 Query: 306 ELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDL 365 +E ++ + + K + E S+ + +P++ G+ G+D + + D Sbjct: 299 MIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDF 358 Query: 366 TSVGFIFPNDDKKVFLHSHSFIG---LRTNLEQKSKRDKINYE---LAIERGEAET--TQ 417 +VG +F + D V+L SHSF+ + T ++D IN + I++ E E T Sbjct: 359 AAVGLLFKDRDDYVWL-SHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTV 417 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYD 449 D I+ + ++D+ VK ++Q + D Sbjct: 418 IDEASINPQYIVDWFVKMRDEEGYDLQRIVSD 449 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 88/392 (22%), Positives = 178/392 (45%), Gaps = 17/392 (4%) Query: 69 LMEFQKFIVGSLY-GWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQ 127 L FQKFI+ ++ + ++ K I M R GK+ ++SG+ + LL + N Sbjct: 64 LENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGI-IAYLLSPFHGIKNYN 122 Query: 128 IYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPD 187 + + +++ QA+T F + N + S K ++E K++I+ + ++SV ++N + Sbjct: 123 VSLVANSEDQAKTSF---DEIYNTVESNPK-LKEIYYNTKSEIKSIHTNSVMRFRTSNGN 178 Query: 188 AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYI 247 DG + + DE+ ++ K+G+ KN + T G + Sbjct: 179 TKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKA 238 Query: 248 KRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLES--KEHRKTILQNVKADIQD 305 K++L+ R ++ F + ++D + EV D+ KW KA P+ ++ + + V ++ Sbjct: 239 KKVLSGNARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYEE 298 Query: 306 ELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDL 365 +E ++ + + K + E S+ + +P++ G+ G+D + + D Sbjct: 299 MVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDF 358 Query: 366 TSVGFIFPNDDKKVFLHSHSFIG---LRTNLEQKSKRDKINYE---LAIERGEAET--TQ 417 +VG +F N V+L SHSF+ + T ++D IN + I++ E E T Sbjct: 359 AAVGLLFKNGADYVWL-SHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTV 417 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYD 449 D I+ + ++D+ VK ++Q + D Sbjct: 418 IDEASINPQYIVDWFVKMRDEEGYDLQRIVSD 449 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 117/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTGNLMKIELLPTQ 70 Query: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 71 RW--------WYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILG- 121 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFASFKTTF 180 Query: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 ++ + +K EE D F +++ E+V+D+ W A+PL+ S ++ Sbjct: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVI 295 Query: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 + EL +G + FN+ L + D TP + Sbjct: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 N Y+G+DLS + DLT+V F+ + K + H+ +F +R+ EQ + + Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEG-KTYSHTLTF-SVRSQYEQLDTEQQELWTEF 399 Query: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 ++RGE D+ I+ +I I F T ++ + YDP + IE D Sbjct: 400 VDRGEL--ILLDTEYINVNDLIPHINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 Query: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 Query: 522 INKKMNRQKIDPIISIITAFTEA 544 KK+ + KIDP +++ A A Sbjct: 513 YTKKLEKDKIDPTVALTMALEMA 535 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 Query: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 Query: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 Query: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 Query: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 Query: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 Query: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIEVGQSF 476 D ++D+ V D I + + D W++ I IE + + F Sbjct: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 Query: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 Query: 528 RQKIDPIISIITA 540 ++ID + + + A Sbjct: 521 AKRIDAVPTAVMA 533 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 80.5 bits (197), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 102/477 (21%), Positives = 197/477 (41%), Gaps = 49/477 (10%) Query: 87 QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMAS 146 Q + + ++++ R GKS +++ +N ++ G ++ + V + QA+ +F Sbjct: 89 QVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVR 146 Query: 147 QQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Q + + K K +E + F +N+ G + ++ I DE+ + Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 206 PDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNLNSQMYQEYKYIKRILNEEVRADNYFV 262 +D S K Q N ++ +++ G D L ++ + +K EE D F Sbjct: 207 GEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-----EEEFYNDRSFG 261 Query: 263 YCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFN 322 +++ E+V+D+ W A+PL+ +++ EL +G + FN Sbjct: 262 LLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEY------ELAQGDPALQNKFLAFN 315 Query: 323 LWQAQREDSLLDISDWEQVITP---------MPNINGKDVYIGVDLSRLDDLTSVGFIFP 373 + L + D TP + N Y+G+DLS + DLT+V F+ Sbjct: 316 MG--------LPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCE 367 Query: 374 NDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIV 433 + K + H+ +F +R+ EQ + + ++RGE D+ I+ +I +I Sbjct: 368 LEG-KTYSHTLTF-SVRSQYEQLDTEQQELWTEFVDRGEL--ILLDTEYINVNDLIPYIN 423 Query: 434 KFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS------IKEFR 487 F T ++ + YDP + IE D + G + +A+ Q IK + Sbjct: 424 DFRTKTGCRLRKIGYDPARYEILKGLIERYFFD----KDGDNQRAIRQGFSMNDYIKLLK 479 Query: 488 MWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 + + ++ HN ++ N AV I D + KK+ + KIDP +++ A A Sbjct: 480 SKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM-YTKKLEKDKIDPTVALTMALEMA 535 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 79.7 bits (195), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 101/477 (21%), Positives = 197/477 (41%), Gaps = 49/477 (10%) Query: 87 QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMAS 146 Q + + ++++ R GKS +++ +N ++ G ++ + V + QA+ +F Sbjct: 89 QVNLINEIFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVR 146 Query: 147 QQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Q + + K K +E + F +N+ G + ++ I DE+ + Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 206 PDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNLNSQMYQEYKYIKRILNEEVRADNYFV 262 +D S K Q N ++ +++ G D L ++ + +K EE D F Sbjct: 207 GEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-----EEEFYNDRSFG 261 Query: 263 YCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFN 322 +++ E+V+D+ W A+PL+ +++ EL +G + FN Sbjct: 262 LLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEY------ELAQGDPALQNKFLAFN 315 Query: 323 LWQAQREDSLLDISDWEQVITP---------MPNINGKDVYIGVDLSRLDDLTSVGFIFP 373 + L + D TP + N Y+G+DLS + DLT+V F+ Sbjct: 316 MG--------LPMQDTAYYFTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCE 367 Query: 374 NDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIV 433 + K + H+ +F +R+ EQ + + ++RGE D+ I+ +I +I Sbjct: 368 LEG-KTYSHTLTF-SVRSQYEQLDTEQQELWTEFVDRGEL--ILLDTEYINVNDLIPYIN 423 Query: 434 KFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS------IKEFR 487 F + ++ + YDP + IE D + G + +A+ Q IK + Sbjct: 424 DFRSKTGCRLRKIGYDPARYEILKGLIERYFFD----KDGDNQRAIRQGFSMNDYIKLLK 479 Query: 488 MWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 + + ++ HN ++ N AV I D + KK+ + KIDP +++ A A Sbjct: 480 SKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM-YTKKLEKDKIDPTVALTMALEMA 535 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 79.7 bits (195), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 Query: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 Query: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 Query: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 Query: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 Query: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 Query: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 Query: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 Query: 444 QAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 Query: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 V N I +D ++ K M Q+ID Sbjct: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 Query: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 Query: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 Query: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 Query: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 + EL +G + FN+ L + D TP + Sbjct: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 Query: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 Query: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 Query: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 Query: 522 INKKMNRQKIDPIISIITAFTEA 544 KK+ + KIDP +++ A A Sbjct: 513 YTKKLEKDKIDPTVALTMALEMA 535 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 73.6 bits (179), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 100/464 (21%), Positives = 185/464 (39%), Gaps = 44/464 (9%) Query: 69 LMEFQKFIVGSLYGWRR-----GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPK 123 L FQKFI ++ + MF +I R GK+ ++S M + E + Sbjct: 69 LFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCM-IFECTTKNHGV 127 Query: 124 FNRQIYVASSTYKQAQT----IFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF 179 + I + +++ QA+T I+ M + + M++ ++ RK + S Sbjct: 128 DHYNIDIVATSEDQAKTSFEDIYNMLEENKDTMKNVYRWNLVAIQHRK-------NGSTI 180 Query: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 ++N DG P DE + D Y+ +G+ ++ ++T G S Sbjct: 181 KYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGSV 240 Query: 240 MYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNV 299 + +++LN E F + ++DS +EVQ++TKW KA P++ + + Sbjct: 241 LDDRKVLAQQVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMI-------LYYKPL 293 Query: 300 KADIQDELEKGTSYHKILI----KNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYI 355 + +I + S +I++ K N + D + PMP++ Sbjct: 294 RIEIDQHWDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIG 353 Query: 356 GVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAET 415 G+D + + D +VG +F + K +F H H+FI + K + K A+E+G A Sbjct: 354 GIDFADVRDFCAVGLLFKKEGKYIFKH-HTFICAES---LKITKFKFPIHEAVEKGLATI 409 Query: 416 TQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQ- 474 + ID + + ++ H + + D + +S S PLI+V Sbjct: 410 IHDN--YIDEDYPLQWFLEQAKEH--RIINIATDSFRYKSLKEAFTSAGA--PLIQVRSG 463 Query: 475 --SFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDG 516 S LS + + A +I D+ML+ NN + D Sbjct: 464 PYSHNRLSSMVDKL---FASHKIIFGDDMLMRWYCNNVAIKFDA 504 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 63.2 bits (152), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 157/394 (39%), Gaps = 34/394 (8%) Query: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 Query: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 Query: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 Query: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Query: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 Query: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 G + T+ D ++D+ V D I + D W++ I IE + Sbjct: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DAKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 Query: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNML 502 + F +S S+ W + ++H+ N L Sbjct: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 Score = 28.9 bits (63), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 L+G R +Y R + A+I +ARK GK+L V Sbjct: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 60.8 bits (146), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 117/520 (22%), Positives = 228/520 (43%), Gaps = 61/520 (11%) Query: 48 SNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLI 107 + K F+E N+ ++ + K ++ +Y Y++ + + + R KS++ Sbjct: 37 AEKIFDFIEEFMTLPNNERFKIIPYHKAVLTLMYC---TPYQI-DEFVVIVGRSNAKSIL 92 Query: 108 VSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIF-----KMASQQ---VNLMRSKSKFI 159 +++ EL +PK N I + ++ QA+ I M + Q +N +++ K Sbjct: 93 DVMIALIELFL--FPKPNSVIALMATKKDQAEKILMKHFRAMGNCQGTIINKFKNQFKLN 150 Query: 160 REKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMT 219 +E+ V+ I + + + ++N D +DG + I+DE + + + + + G Sbjct: 151 KEQILVKDNSILKSKGTEI-SIYASNEDTLDGGREQLVIIDEFGAFKKNPLIT-IRQG-- 206 Query: 220 LQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNY--FVYCAEMDSQEEVQDET 277 L+KN TL +ST + + Y + E V+ D++ +V+ +D +EV+D + Sbjct: 207 LRKNKGTLFISTTNNVIRGGAYDDEL---ESWKEWVKDDDFSHWVFYYALDDYDEVKDSS 263 Query: 278 KWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISD 337 K+IKA P L L++++ D + KI+ K FNL ++ Sbjct: 264 KYIKANPAL----GYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNL-SMTDSTTIFSKQL 318 Query: 338 WEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKS 397 ++ + P + +G+ V IG D S D+ + IG R N Sbjct: 319 VDKCLVPPLDFSGRLVAIGSDFSVRGDVWG-----------------TVIGYRENGHYYF 361 Query: 398 KRDKINYELAIER----GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQ-AVCYDPWN 452 K + E A ++ GE T + + M D + D F++ + +V A+ YDP Sbjct: 362 KAIPVMPESAEDKFKHLGETITHEGINNMTD--EAWD---AFMSAMNGSVPIALNYDPNY 416 Query: 453 AQSFITTIE-SMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAV 511 A++FI E + +++ + SFK LS +++ + + + +I H D+ LL + NA Sbjct: 417 AKNFIDKFEQTYDIEFYNKVMQNSFK-LSNTLEATQKLMEEGKI-HFDSKLLAVHLMNAE 474 Query: 512 LIRDGEDNVKINKKMNRQKI---DPIISIITAFTEARMHE 548 + ++I KK KI D +I+++ F E+ E Sbjct: 475 TKINDFGLMRIIKKGYTDKIDLADALINLMWWFLESEESE 514 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 104/506 (20%), Positives = 197/506 (38%), Gaps = 84/506 (16%) Query: 63 TNQPMPLMEFQKFIVGSLY--------GWRRGQYRMFTKAYISMARKQGKSLIVSGMSVN 114 QP L+ +Q+ ++ Y WRR ++R + +ARK GKS I + + + Sbjct: 46 AGQPFRLLPWQRTLLIDAYELTQDTFGRWRR-KHRTVV---VCVARKNGKSTIAAAIMLY 101 Query: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 L+ RQ+ A++ QA+ +F A Q VN + + DV + Sbjct: 102 HLI-ADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLAAVCNVQRDVIR------Y 154 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 + + +S + G +P LDE A +++ G + P+ L++STAG Sbjct: 155 KDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGP 214 Query: 235 NLNSQMYQEYKYIKRILNEEVRADN----YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 + + + +R+ + E AD+ Y + ++ + D W + P + Sbjct: 215 DPDGPFAALCEQGERVNSGE--ADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYD--- 269 Query: 291 HRKTILQ--NVKADIQDELEKGTSYHKI--LIKNFNLWQAQR-EDSLLDISDWEQVITPM 345 IL + KA Q E +++ ++ + W DSL +D + + P Sbjct: 270 ----ILNPDDFKAAAQRSTEASFRIYRLSQFVRGASTWLPHGLWDSL--AADDDDPLEP- 322 Query: 346 PNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYE 405 G +V G D S D T++ D +VF+ H ++ D I++ Sbjct: 323 ----GDEVVCGFDGSWKGDSTAL-VACRVRDLRVFVLGH----------WEAPADDIHWR 367 Query: 406 LAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL 465 + + A+ ++ +D +V + + DP+ + + +E+ Sbjct: 368 VPM----ADVREALHSALDTYRVRNLVA---------------DPYRWEETLDNLEAEGF 408 Query: 466 D---WPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKI 522 +P + + A R D R+ H+ N L + NAVL D +I Sbjct: 409 PVEAFPTNSLARMVPATQAVYDACR----DGRLSHDGNPALARHIGNAVLKEDAR-GARI 463 Query: 523 NKKM--NRQKIDPIISIITAFTEARM 546 K+ +R+KID ++++ A A M Sbjct: 464 TKEFGASRRKIDLAVAMVLAVWGAVM 489 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 19/179 (10%) Query: 63 TNQPMPLMEFQKFIVGSLY--------GWRRGQYRMFTKAYISMARKQGKSLIVSGMSVN 114 QP L+ +Q+ ++ Y WRR ++R + +ARK GKS I + + + Sbjct: 43 AGQPFRLLPWQRELLIDAYVLTQDTFGRWRR-KHRTVV---VCVARKNGKSTIAAAIMLY 98 Query: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 L+ RQI A++ QA+ +F A Q VN S + DV++ I Sbjct: 99 HLI-ADRGDAQRQIIAAANDRNQARMVFDSAKQMVN----ASPKLAAVCDVQRDVIR--Y 151 Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 + + +S + G +P LDE A +++ G + P+ L++STAG Sbjct: 152 KDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAG 210 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/398 (19%), Positives = 163/398 (40%), Gaps = 53/398 (13%) Query: 176 SSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDN 235 + F +S A++G +A++DE + P++ + + G L+KN LL T+ + Sbjct: 146 GATFRIVSAADSALNGGREKLAVVDEFGTFPNNPL-PTIREG--LEKNEGLLLTITSNNK 202 Query: 236 LNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTI 295 + Y E R N+E+ + E+D +++D +W KA P L+ E + T+ Sbjct: 203 VRGGAYDEELDTFRGYNDEMDNFKQWGLIFELDDYSQIEDPNEWYKANPALD--EAKGTV 260 Query: 296 -LQNVKADIQDELEKGTSYHKILIKNFN--------LWQAQREDSLLDISDWEQVITPMP 346 + + ++ + + K FN + A+ + + D+ D+E+V Sbjct: 261 STETITRELNAARHSTIKANNLFSKRFNFSVNAVTSFFTAEEIEIVTDL-DFEKVFYDKW 319 Query: 347 NINGKDVYIGVD------LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRD 400 + G D + D L++++D +I+P I +R K+ D Sbjct: 320 AVLGCDFSLSGDTWGNVLLTKVEDTL---YIYP-------------IPIR----PKNVAD 359 Query: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 K + + T D D + + + + + + + YDP + +F+ Sbjct: 360 KYKH-------LSGTFYHDEDKNDTQAAVKLLFDKLQELRIGLVGIGYDPAYSANFLYLF 412 Query: 461 ESMALDWPLIE-VGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDN 519 E + L+E V Q+ +SQ I + + + +N ++ N V +D Sbjct: 413 EQNKIKARLMEKVKQNAFTVSQHIMSLQRLLKTRGLLYNSEIMKQHLRNARVKYKD-TTQ 471 Query: 520 VKINKKMNRQKIDPIISIITAFTEARMHEFQENWTEKY 557 V++ K ++ KID + + + A ++E ++ EKY Sbjct: 472 VRLVKVSDQSKIDLVDAAVNALA---VYELNRDYVEKY 506 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 28.9 bits (63), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 Query: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Query: 206 PD 207 P+ Sbjct: 259 PN 260 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 28.1 bits (61), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%) Query: 98 MARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLM----- 152 + R+ GKS S +V EL + + Q ++ + TY QA+ IF ++V + Sbjct: 37 LGRQSGKSEAASVEAVFEL----FARPGSQGWIIAPTYDQAEIIFGRVVEKVERLAEVFP 92 Query: 153 ---------RSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELA 203 R + V + V +S ++ PD + G ILDE A Sbjct: 93 ATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLDFVILDEAA 152 Query: 204 SMP 206 +P Sbjct: 153 MIP 155 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 28.1 bits (61), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%) Query: 98 MARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLM----- 152 + R+ GKS S +V EL + + Q ++ + TY QA+ IF ++V + Sbjct: 37 LGRQSGKSEAASVEAVFEL----FARPGSQGWIIAPTYDQAEIIFGRVVEKVERLAEVFP 92 Query: 153 ---------RSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELA 203 R + V + V +S ++ PD + G ILDE A Sbjct: 93 ATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLDFVILDEAA 152 Query: 204 SMP 206 +P Sbjct: 153 MIP 155 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 27.7 bits (60), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 16/183 (8%) Query: 196 VAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKR-ILNEE 254 + +LDE + D M T M +NPL LL T +S + + +++ L+ E Sbjct: 161 ILVLDEAQRLTDKAMDDLIPT-MNTVENPLILLTGTPPRPTDSG--EVFTMLRQDALDGE 217 Query: 255 VRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYH 314 Y + A+ + + D + KA P + + I + + K + Sbjct: 218 SEGTLYVEFSADEGAHPD--DRAQLRKANPSYPHRTSERAIRR---------MRKNLTEE 266 Query: 315 KILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPN 374 L + F +W ++ + W ++ + P K GVD+S + SV ++ + Sbjct: 267 SFLREAFGIWDKVVHRPVVTAARWRRLESTGPAAGVKPNGFGVDMSH-SRMVSVNAVWLD 325 Query: 375 DDK 377 D+ Sbjct: 326 GDQ 328 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 26.9 bits (58), Expect = 0.69, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 16/122 (13%) Query: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 RM T +++R+ GK+ +V+ + + FN+ V +K + + + Sbjct: 154 RMTT---CNLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 204 Query: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Q + L+ F++ + K IE SS+ A +++PDAV G + +DE A + Sbjct: 205 QAIELL---PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFI 260 Query: 206 PD 207 P+ Sbjct: 261 PN 262 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 26.9 bits (58), Expect = 0.71, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 Query: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 26.6 bits (57), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 Query: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 Query: 535 ISIITAF 541 ++ + A+ Sbjct: 535 VTAVLAW 541 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 816 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 875 Query: 535 ISIITAF 541 ++ + A+ Sbjct: 876 VTAVLAW 882 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 13/115 (11%) Query: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMR 153 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 158 CNLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL- 210 Query: 154 SKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 F++ + K I+ SS+ A +++PDAV G + +DE A +P+ Sbjct: 211 --PDFLQPGIVEWNKGSIQLDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 + S++PDAV G + +DE+A +P+ Sbjct: 220 NGCAIGAFSSSPDAVRGNSFALIYIDEVAFIPN 252 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNP-LTLLVSTAGDNLNSQMYQEYK 245 D VDGK P + I S E++SR +NP L ++ + +L S+M + Sbjct: 57 DVVDGKQPRLMIYAPPRSG-KSELFSRRFPAWVFGQNPELQIIACSYSADLASRMNLD-- 113 Query: 246 YIKRILNEEV 255 ++RI+++ + Sbjct: 114 -VQRIIDDPI 122 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 + S++PDAV G + +DE+A +P+ Sbjct: 221 NGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPN 253 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 + S++PDAV G + +DE+A +P+ Sbjct: 221 NGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPN 253 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.132 0.383 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,807 Number of Sequences: 514 Number of extensions: 11213 Number of successful extensions: 360 Number of sequences better than 100.0: 83 Number of HSP's better than 100.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 94 length of query: 564 length of database: 206,069 effective HSP length: 76 effective length of query: 488 effective length of database: 167,005 effective search space: 81498440 effective search space used: 81498440 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)