Query lcl|NC_001629.1_cdsid_NP_042320.1 [gene=bIL67_gp13] [protein=hypothetical protein] [protein_id=NP_042320.1] [location=complement(12228..13067)] Match_columns 279 No_of_seqs 6 out of 9 Neff 2.3 Searched_HMMs 1612 Date Thu Nov 7 12:38:44 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_13 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_13_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:4073 Length: 279 # 100.0 1E-166 7E-170 930.3 21.0 279 1-279 1-279 (279) 2 protein:vir:97376 Length: 320 100.0 1.2E-82 7.7E-86 469.6 17.1 270 1-279 1-316 (320) 3 protein:vir:93867 Length: 378 99.4 9E-16 5.6E-19 103.1 11.0 257 1-279 1-331 (378) 4 protein:vir:1661 Length: 378 # 99.4 2.9E-15 1.8E-18 100.3 12.0 255 1-279 1-331 (378) 5 protein:vir:94869 Length: 378 99.4 4.4E-15 2.7E-18 99.3 11.3 255 1-279 34-345 (378) 6 protein:vir:94002 Length: 378 99.4 9E-15 5.6E-18 97.6 12.2 257 1-279 1-331 (378) 7 protein:vir:858 Length: 378 # 99.3 5.2E-14 3.2E-17 93.4 12.0 254 1-279 1-331 (378) 8 protein:vir:100650 Length: 395 99.0 5.3E-12 3.3E-15 82.4 12.3 278 1-279 1-359 (395) 9 protein:vir:9507 Length: 395 # 99.0 5.3E-12 3.3E-15 82.4 12.3 278 1-279 1-359 (395) 10 protein:vir:101289 Length: 395 99.0 5.3E-12 3.3E-15 82.4 12.3 278 1-279 1-359 (395) 11 protein:vir:95965 Length: 385 98.9 1.4E-10 8.9E-14 74.5 15.5 277 1-279 1-363 (385) 12 protein:vir:6210 Length: 394 # 98.8 1E-10 6.4E-14 75.3 12.0 275 1-279 42-366 (394) 13 protein:vir:4089 Length: 395 # 98.8 2.7E-10 1.7E-13 73.0 13.4 271 1-279 41-365 (395) 14 protein:vir:100882 Length: 383 98.7 3.8E-10 2.3E-13 72.2 12.0 255 1-279 33-331 (383) 15 protein:vir:100187 Length: 385 98.7 5E-10 3.1E-13 71.6 12.1 255 1-279 47-331 (385) 16 protein:vir:1884 Length: 424 # 98.6 1.4E-09 8.5E-13 69.2 12.4 271 1-279 58-399 (424) 17 protein:vir:78310 Length: 376 98.6 2.1E-09 1.3E-12 68.1 13.1 277 1-279 1-342 (376) 18 protein:vir:189 Length: 424 # 98.6 1.8E-09 1.1E-12 68.5 12.6 271 1-279 58-399 (424) 19 protein:vir:81095 Length: 416 98.6 1.7E-09 1E-12 68.7 12.2 263 1-279 43-378 (416) 20 protein:vir:4598 Length: 416 # 98.6 1.7E-09 1E-12 68.7 12.2 263 1-279 43-378 (416) 21 protein:vir:100249 Length: 431 98.6 1.6E-09 1E-12 68.8 12.1 267 1-279 67-407 (431) 22 protein:vir:483 Length: 413 # 98.6 3.3E-09 2E-12 67.1 12.9 272 1-279 43-381 (413) 23 protein:vir:100150 Length: 437 98.6 3.5E-09 2.2E-12 66.9 13.0 269 1-279 52-393 (437) 24 protein:vir:9359 Length: 348 # 98.6 2.8E-09 1.7E-12 67.5 12.3 254 1-279 3-317 (348) 25 protein:vir:80333 Length: 419 98.5 2.3E-09 1.4E-12 68.0 11.1 272 1-279 43-382 (419) 26 protein:vir:4828 Length: 382 # 98.5 2E-09 1.3E-12 68.2 10.5 266 1-279 42-368 (382) 27 protein:vir:1431 Length: 419 # 98.5 3.4E-09 2.1E-12 67.0 11.0 269 1-279 43-382 (419) 28 protein:vir:94426 Length: 409 98.5 5.6E-09 3.5E-12 65.8 11.8 274 1-279 35-378 (409) 29 protein:vir:102080 Length: 429 98.5 1.3E-08 8E-12 63.8 13.6 275 1-279 47-393 (429) 30 protein:vir:105002 Length: 432 98.4 1E-08 6.5E-12 64.3 12.5 274 1-279 50-396 (432) 31 protein:vir:102855 Length: 432 98.4 1E-08 6.5E-12 64.3 12.5 274 1-279 50-396 (432) 32 protein:vir:107605 Length: 432 98.4 1E-08 6.5E-12 64.3 12.5 274 1-279 50-396 (432) 33 protein:vir:102118 Length: 409 98.4 1.5E-08 9.1E-12 63.5 13.0 272 1-279 40-385 (409) 34 protein:vir:9702 Length: 406 # 98.4 7.4E-09 4.6E-12 65.2 11.2 265 1-279 1-369 (406) 35 protein:vir:8100 Length: 466 # 98.4 1.6E-08 9.7E-12 63.4 12.9 272 1-279 70-429 (466) 36 protein:vir:9641 Length: 395 # 98.4 1.3E-08 8E-12 63.8 12.4 275 1-279 1-372 (395) 37 protein:vir:78641 Length: 278 98.4 2.4E-08 1.5E-11 62.4 13.5 246 13-276 1-278 (278) 38 protein:vir:81072 Length: 432 98.4 6E-09 3.7E-12 65.6 10.2 274 1-279 58-394 (432) 39 protein:vir:93943 Length: 409 98.4 1.1E-08 6.8E-12 64.2 11.5 274 1-279 35-378 (409) 40 protein:vir:98643 Length: 395 98.4 3E-08 1.9E-11 61.8 13.9 279 1-279 1-371 (395) 41 protein:vir:6240 Length: 457 # 98.4 9.9E-09 6.2E-12 64.5 11.1 268 1-279 50-400 (457) 42 protein:vir:1380 Length: 422 # 98.4 7.7E-09 4.8E-12 65.1 10.4 277 1-279 52-395 (422) 43 protein:vir:2683 Length: 412 # 98.4 2.5E-08 1.6E-11 62.2 13.1 268 1-279 38-361 (412) 44 protein:vir:98396 Length: 441 98.4 1.6E-08 1E-11 63.3 11.9 273 1-279 68-403 (441) 45 protein:vir:4854 Length: 386 # 98.4 1.6E-08 9.8E-12 63.3 11.6 266 1-279 45-365 (386) 46 protein:vir:101647 Length: 460 98.4 1.1E-08 6.8E-12 64.2 10.7 270 1-279 53-433 (460) 47 protein:vir:81152 Length: 411 98.3 1.5E-08 9.3E-12 63.5 11.0 277 1-279 40-387 (411) 48 protein:vir:79984 Length: 441 98.3 3.7E-08 2.3E-11 61.3 13.0 270 1-279 68-403 (441) 49 protein:vir:9408 Length: 441 # 98.3 3.7E-08 2.3E-11 61.3 13.0 270 1-279 68-403 (441) 50 protein:vir:1023 Length: 392 # 98.3 2.4E-08 1.5E-11 62.4 11.8 260 1-279 51-369 (392) 51 protein:vir:3989 Length: 392 # 98.3 2.4E-08 1.5E-11 62.4 11.8 260 1-279 51-369 (392) 52 protein:vir:5737 Length: 419 # 98.3 4.3E-08 2.7E-11 61.0 12.7 270 1-279 42-383 (419) 53 protein:vir:105064 Length: 421 98.3 3E-08 1.8E-11 61.9 11.5 271 1-279 44-385 (421) 54 protein:vir:104259 Length: 403 98.3 4.4E-08 2.7E-11 60.9 11.7 261 1-279 43-336 (403) 55 protein:vir:3843 Length: 397 # 98.2 1.7E-08 1E-11 63.2 9.0 268 1-279 40-362 (397) 56 protein:vir:101648 Length: 518 98.2 6.4E-08 4E-11 60.0 12.2 274 1-279 39-391 (518) 57 protein:vir:1326 Length: 457 # 98.2 4.8E-08 3E-11 60.7 10.7 268 1-279 50-400 (457) 58 protein:vir:10362 Length: 432 98.2 6.4E-08 3.9E-11 60.0 11.1 268 1-279 58-394 (432) 59 protein:vir:95378 Length: 406 98.2 1E-07 6.2E-11 59.0 12.0 275 1-279 23-373 (406) 60 protein:vir:3868 Length: 417 # 98.2 6.2E-08 3.8E-11 60.1 10.7 272 1-279 38-372 (417) 61 protein:vir:97060 Length: 432 98.2 1.3E-07 8.2E-11 58.3 12.5 268 1-279 58-394 (432) 62 protein:vir:7853 Length: 518 # 98.2 1.3E-07 7.8E-11 58.4 12.4 268 1-279 39-391 (518) 63 protein:vir:96980 Length: 409 98.2 4.4E-07 2.7E-10 55.4 15.3 268 1-279 35-364 (409) 64 protein:vir:4454 Length: 414 # 98.1 1.8E-07 1.1E-10 57.6 13.0 272 1-279 23-382 (414) 65 protein:vir:7407 Length: 392 # 98.1 1.5E-07 9.5E-11 57.9 12.1 261 1-279 51-369 (392) 66 protein:vir:960 Length: 413 # 98.1 1.3E-07 8.3E-11 58.3 11.7 261 1-279 61-388 (413) 67 protein:vir:4337 Length: 434 # 98.1 1.1E-07 7E-11 58.7 10.9 268 1-279 56-396 (434) 68 protein:vir:94666 Length: 723 98.1 7.2E-07 4.5E-10 54.3 14.8 272 1-279 32-381 (723) 69 protein:vir:4952 Length: 386 # 98.1 1.1E-07 6.5E-11 58.8 10.2 266 1-279 45-371 (386) 70 protein:vir:4995 Length: 384 # 98.0 1.7E-07 1E-10 57.8 10.7 266 1-279 48-365 (384) 71 protein:vir:80134 Length: 403 98.0 3.5E-07 2.2E-10 56.0 11.4 255 1-279 39-335 (403) 72 protein:vir:1266 Length: 416 # 97.8 2.1E-06 1.3E-09 51.7 13.6 268 1-279 45-381 (416) 73 protein:vir:81218 Length: 423 97.8 1.1E-06 7.1E-10 53.2 12.2 263 1-279 37-386 (423) 74 protein:vir:1082 Length: 359 # 97.7 3.4E-06 2.1E-09 50.6 12.3 275 1-277 1-359 (359) 75 protein:vir:8418 Length: 409 # 97.6 5.9E-06 3.6E-09 49.3 13.2 258 1-279 43-341 (409) 76 protein:vir:93610 Length: 454 97.5 6.1E-06 3.8E-09 49.2 12.3 273 1-279 50-390 (454) 77 protein:vir:4509 Length: 424 # 97.2 3.5E-05 2.2E-08 45.0 12.9 274 1-279 58-397 (424) 78 protein:vir:96579 Length: 576 97.2 6.9E-05 4.3E-08 43.4 14.2 264 1-279 77-433 (576) 79 protein:vir:99312 Length: 563 97.1 1.9E-05 1.2E-08 46.5 10.4 272 1-279 122-457 (563) 80 protein:vir:95599 Length: 563 97.1 1.9E-05 1.2E-08 46.5 10.4 272 1-279 122-457 (563) 81 protein:vir:102727 Length: 945 97.0 7.7E-05 4.8E-08 43.1 13.3 270 1-279 111-470 (945) 82 protein:vir:4194 Length: 540 # 96.9 0.00011 6.8E-08 42.3 13.1 263 1-279 39-408 (540) 83 protein:vir:99452 Length: 651 96.8 4.5E-05 2.8E-08 44.4 10.5 259 1-279 123-500 (651) 84 protein:vir:3153 Length: 467 # 96.5 0.0001 6.4E-08 42.5 10.4 277 3-279 1-408 (467) 85 protein:vir:4156 Length: 542 # 96.4 0.00026 1.6E-07 40.3 12.1 259 1-279 40-410 (542) 86 protein:vir:63755 Length: 547 96.0 0.0011 7.1E-07 36.7 13.7 266 1-279 80-446 (547) 87 protein:vir:80796 Length: 574 95.7 0.0013 7.9E-07 36.5 12.8 273 1-279 88-468 (574) 88 protein:vir:80644 Length: 551 95.0 0.0029 1.8E-06 34.5 13.4 276 1-279 84-465 (551) 89 protein:vir:8317 Length: 409 # 94.5 0.0016 9.9E-07 35.9 9.8 265 1-279 78-402 (409) 90 protein:vir:98853 Length: 219 94.4 0.0022 1.4E-06 35.2 10.3 190 64-274 1-219 (219) 91 protein:vir:100691 Length: 535 92.8 0.008 5E-06 32.1 10.8 274 1-279 70-459 (535) 92 protein:vir:100328 Length: 346 91.1 0.017 1.1E-05 30.2 12.8 262 1-274 21-346 (346) 93 protein:vir:3780 Length: 345 # 89.5 0.026 1.6E-05 29.3 10.2 248 1-271 52-345 (345) 94 protein:vir:96068 Length: 765 86.7 0.042 2.6E-05 28.1 9.5 213 1-279 183-442 (765) 95 protein:vir:79150 Length: 368 85.4 0.053 3.3E-05 27.6 12.3 260 1-273 36-368 (368) 96 protein:vir:3743 Length: 345 # 84.9 0.057 3.5E-05 27.4 9.6 247 1-271 52-345 (345) 97 protein:vir:79207 Length: 351 84.4 0.06 3.7E-05 27.3 10.6 259 1-270 28-351 (351) 98 protein:vir:94049 Length: 532 79.4 0.1 6.5E-05 26.0 9.8 223 1-279 156-424 (532) 99 protein:vir:103971 Length: 376 78.3 0.12 7.2E-05 25.7 12.0 256 1-270 26-376 (376) 100 protein:vir:5249 Length: 437 # 77.0 0.11 6.9E-05 25.8 8.0 227 1-279 97-359 (437) 101 protein:vir:99563 Length: 862 68.7 0.23 0.00014 24.1 8.6 222 1-279 225-470 (862) 102 protein:vir:98567 Length: 340 67.0 0.26 0.00016 23.8 9.9 247 1-279 54-340 (340) 103 protein:vir:78191 Length: 351 65.9 0.28 0.00017 23.6 10.3 260 1-268 28-351 (351) 104 protein:vir:78749 Length: 337 64.8 0.29 0.00018 23.5 11.1 238 1-264 53-337 (337) 105 protein:vir:79647 Length: 435 61.6 0.15 9.1E-05 25.2 5.1 257 1-279 85-389 (435) 106 protein:vir:107742 Length: 537 59.1 0.24 0.00015 24.0 5.8 225 1-279 177-437 (537) 107 protein:vir:267 Length: 348 # 49.7 0.63 0.00039 21.7 9.1 264 1-276 17-348 (348) 108 protein:vir:104338 Length: 422 49.3 0.059 3.6E-05 27.3 0.8 255 1-279 73-400 (422) 109 protein:vir:1150 Length: 350 # 48.5 0.67 0.00041 21.5 11.9 255 1-263 31-350 (350) 110 protein:vir:107662 Length: 427 48.1 0.061 3.8E-05 27.3 0.7 257 1-279 74-403 (427) 111 protein:vir:4698 Length: 251 # 35.1 1.2 0.00077 20.1 7.4 180 1-182 43-251 (251) 112 protein:vir:103219 Length: 201 32.5 1.4 0.00088 19.7 7.8 120 122-279 1-134 (201) 113 protein:vir:79772 Length: 648 30.0 1.6 0.001 19.5 12.3 264 1-279 90-453 (648) 114 protein:vir:6058 Length: 344 # 29.0 1.7 0.0011 19.3 9.9 240 1-261 57-344 (344) No 1 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=100.00 E-value=1.1e-166 Score=930.35 Aligned_cols=279 Identities=97% Similarity=1.430 Sum_probs=278.7 Q ss_pred CcccccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeehhhhhhhhhhccc Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWYGGFKYYAQRVNA 80 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~ 80 (279) ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||+||||+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279) T protein:vir:40 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFYWALQGKEVYRVWYGGFKYYAQRVNA 80 (279) T ss_pred CcccccchhhcccceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeehhhhhhHHHHHhhcCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhhhcCCCccEEEEeecceeeeeccccccccchhhHHHHHHHHHhhhhhhccCceEEEEecCcccchHHHHHHHHHH Q lcl|NC_001629. 81 DQFNILVREPNRRQVTIRTSDYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRER 160 (279) Q Consensus 81 d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~ee~reqa~sR 160 (279) ||||++||+|+|++||||++|||||+||||+|++||+++|+++|++++++|||++++||+|||+|+++|+||+||||+.| T Consensus 81 d~fn~~vr~~~~~~vtVP~~Dv~IieNPlv~v~~ee~~kM~~la~nai~~KLD~~~qIk~fIKTd~d~glee~kekaR~r 160 (279) T protein:vir:40 81 DQFNIVVREPNRREVTIRTNDYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRER 160 (279) T ss_pred chhhhheecCCcceeEeecchhhhhhcchheeccchhhHHHHHHHhhhhhhhcccceeeeEEecCcchhHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcCCcccccccccccceehhhhhhhHHHHHHHh Q lcl|NC_001629. 161 LTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQH 240 (279) Q Consensus 161 ik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQy 240 (279) ||+|+++|+++||||||++||||+|||||||++||+|+|+|||||||||||||+||+|+|||+|+||||||+|+|||||| T Consensus 161 Ik~mlalAk~~nGityid~~ddItQL~kDYStslk~die~lkS~l~Sq~GinekIL~GsAtE~q~iAyy~rtVePILkQy 240 (279) T protein:vir:40 161 LTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQH 240 (279) T ss_pred HHHHHHHHHhcCCeeeecCCceeEeeccccccccHHHHHHHHHHHHhhcCCchhhccccCchhhhhhHHHhhHHHHHHHh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 241 DKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 241 ek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) ||+|||+|||||+||||||||||||||||.|||||.||| T Consensus 241 ek~liY~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) T protein:vir:40 241 DKNIIFNQENFVAYISTTAKGGAIESKSSKRDSEPVGND 279 (279) T ss_pred cccccchhhhhhhhheecccCcccccccccccCCCCCCC Confidence 999999999999999999999999999999999999999 No 2 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=100.00 E-value=1.2e-82 Score=469.63 Aligned_cols=270 Identities=23% Similarity=0.378 Sum_probs=216.1 Q ss_pred Ccccccchhhcc------ceeeeeeecC-----cchhHHHHHHH--HHHHHhhccc---------chhhhhhhhhhhhhh Q lcl|NC_001629. 1 MSLFNLSRRAED------VSFSTFTVQD-----PTTDLLLGKLL--GLVSYFDNVD---------YSEASKLEDLFFWAL 58 (279) Q Consensus 1 ~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~ 58 (279) |.+||...|..- --....|+.| .|||.-...-. .+..|..... -...|-|..|.-.|| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (320) T protein:vir:97 1 MGIFNFKKRETLTPELKESIIRQVTIEDESPFTGTTDFNVRNEVAESIATYLGAYKTSAKRLSLLTNNPSFLRRLVKHAL 80 (320) T ss_pred CCccccccccccChhHHhhhhheeeeccCCCcccccccchhhHHHHHHHHHhhhhccccceeeeeeCCHHHHHHHHHHhh Confidence 999999877421 0011222222 24444221110 1111211111 113456777778888 Q ss_pred ccceeeeeehhhhhhhhh----------h---cccchhhhhhcCCCccEEEEeecceeeeeccccccccchhhHHHHHHH Q lcl|NC_001629. 59 QGQEVYRVWYGGFKYYAQ----------R---VNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANPQRFGVMFGMAS 125 (279) Q Consensus 59 ~~~~~~~~~~~~~~~y~~----------~---v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ee~t~MLd~aL 125 (279) .....|-.--.-.-|.-. | .-.||||+|| +||+|+|||+||+|||++|+++++++|+++|+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~FN~~V------~mtvpfyD~~ILdnpl~gv~tqe~gkM~g~a~ 154 (320) T protein:vir:97 81 HNKTTYVYKSPTYGWLITDSMTIEGLRARLTFTLPDPFNSAV------TMTVPFYDVGIIDSPLVEVDTEEANKMLEAAY 154 (320) T ss_pred cccceEEeeCCccceeeecceeeeeeeeeEEEecCcccceeE------EEEeeeechhhhhhhhcccChHHhhHHHHHHh Confidence 877666433233334321 1 2369999999 99999999999999999999999999999999 Q ss_pred HHhhhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHH Q lcl|NC_001629. 126 NGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIA 205 (279) Q Consensus 126 naI~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~L 205 (279) ++|++|||++|+||+||++++++|+||+||++++|||+|||+|+++||++||++||||+|||||||++|++|+++++++| T Consensus 155 ~~v~kkL~~~~~IKafi~Tdid~GLee~kD~~~~kIk~mq~~A~~~nG~T~i~~~dDI~Qi~pDYS~sn~~D~~l~~t~a 234 (320) T protein:vir:97 155 SAVMKKLHNTGAIKAFISSDIDVGLEKMKEESDSKIKAMLATAELLSGYTYIQRGDDVTQMMPDYTTSNVTDFAAMRTFA 234 (320) T ss_pred hhhhhhccccceeEEEEecccchhHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecccccccchhHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhhcCCcccccccccccceehhhhhhhHHHHHHH---hcccccc--hhhhhhhhheecccCccccccccc------ccCC Q lcl|NC_001629. 206 LSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQ---HDKNIVF--NQENFVAYISTTAKGGKIESKSSS------RDSE 274 (279) Q Consensus 206 ySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQ---yek~lvf--~~E~fv~y~ttta~gg~~~s~~~~------~~~~ 274 (279) +||||||++||+|+|||+|+||||||+|+|||+| |||+||| +|||||+|||| ||||||..-. ...| T Consensus 235 lS~y~m~~~IL~GsAte~~~Iaf~~~~V~PLL~Q~~~~Ek~Lvy~m~~E~FVs~mtT---GG~l~S~~~~~~~~~~~~~~ 311 (320) T protein:vir:97 235 ASQLSVSDKILDGSATDGEKVAVMFRFVEPILEQFREYEPSLIYAMRDEFFVSFMTT---GGMLNSNRVDGWGKEKAPNE 311 (320) T ss_pred HhhcCCchhhccccCCcceeeehhhHhHHHHHHHhhhcCcceeeeeccceeeeeeec---CceeecccccccccccCCcc Confidence 9999999999999999999999999999999999 8999999 99999999999 9999997532 1233 Q ss_pred CCCCC Q lcl|NC_001629. 275 PLGND 279 (279) Q Consensus 275 ~~~~~ 279 (279) .-|.| T Consensus 312 ~~~~~ 316 (320) T protein:vir:97 312 SKGGD 316 (320) T ss_pred ccCCc Confidence 34444 No 3 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=99.44 E-value=9e-16 Score=103.06 Aligned_cols=257 Identities=16% Similarity=0.194 Sum_probs=151.0 Q ss_pred Ccccccchhh------ccceeeeeeecCcc----hhHH---HHHHHH--------------------------------H Q lcl|NC_001629. 1 MSLFNLSRRA------EDVSFSTFTVQDPT----TDLL---LGKLLG--------------------------------L 35 (279) Q Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~---~~~~~~--------------------------------~ 35 (279) |++||-.+.- .+...++ +.+... .|.+ .-.+-+ | T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQRVT-AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEV 79 (378) T ss_pred CccchhhhhhhccccCCCcceee-ecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccccccccccchHHHH Confidence 6666533210 1111111 112221 1111 111111 1 Q ss_pred HHHhhcccchhhhhhhhhhhhh-hccceeeeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecccccccc Q lcl|NC_001629. 36 VSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANP 114 (279) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ 114 (279) +..=-|-..+-..-.+.+..+. +.|.-...+.++|-.- +-+ ...|....+++|.+||.-+-+|+. . T Consensus 80 L~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g--~~~--------~l~~~~~~~~~~~~diih~r~~~~---~ 146 (378) T protein:vir:93 80 LNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTG--ELL--------DLLFADDKKEYKTEELVRLTSPFY---I 146 (378) T ss_pred HhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCc--eEE--------EEEecCCeeEeccceeEEecCccc---c Confidence 1111222222222233333333 3454331222222110 001 112334478899999999999987 5 Q ss_pred chhhHHHHHHHHHhhhhhhccCceEEEEecCcccch---HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc Q lcl|NC_001629. 115 QRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGL---KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS 191 (279) Q Consensus 115 ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~---ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS 191 (279) ......++.++.+|.+.+.+ |++++.++.+-.... ++.+++.++.++++...+ .-+|+.+++.|.++++|..+-. T Consensus 147 ~~~~s~l~~~~~~i~~~~~~-~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~l~~~~~ 224 (378) T protein:vir:93 147 NEDTSILDNALASIQTKLEQ-GKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGS-SYNGLTPVDNKTEIVELKKDYS 224 (378) T ss_pred chhhHHHHHHHHHHHHHHhc-CcccceeeeCCcCCHHHHHHHHHHHHHHHHHhhccc-ccccceEcCCCceEEEccCChh Confidence 55677899999999888764 568899988866443 345555666665555433 4578999999999999998877 Q ss_pred cccHHHHHHHHHHHHhhcCCcccccccccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-------- Q lcl|NC_001629. 192 GSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-------- 263 (279) Q Consensus 192 ts~~~die~lkS~LySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-------- 263 (279) .+..++.++++.+.+..||||..+|.|+++|++.++|+..+|.|++++++. |+.++.++...|.=. T Consensus 225 ~~~~~~~~~~~~~Ia~~fgVPp~~l~g~~~e~~~~~f~~~tl~P~~~~ie~------~l~~kLl~~~er~~~~~~~~~~~ 298 (378) T protein:vir:93 225 VLNKDEIDLIKSELLTGYFMNENILLGTATQEQQIYFYNSTIIPLLIQLEK------ELTYKLISTNRRRVVKGNLYYER 298 (378) T ss_pred hhhHHHHHHHHHHHHHHhCCCHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCChhHhhhhhhcccccc Confidence 777889999999999999999999999999999999999999999999886 556666665433111 Q ss_pred --cccccccc--------------cCCCCC-CC Q lcl|NC_001629. 264 --IESKSSSR--------------DSEPLG-ND 279 (279) Q Consensus 264 --~~s~~~~~--------------~~~~~~-~~ 279 (279) ++...--| .+.-+. |+ T Consensus 299 ~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE 331 (378) T protein:vir:93 299 IIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) T ss_pred eeeccchhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 11100000 000000 00 No 4 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=99.41 E-value=2.9e-15 Score=100.27 Aligned_cols=255 Identities=17% Similarity=0.234 Sum_probs=150.6 Q ss_pred Ccccccchh------hccc-eeeeeeecCcc----hhHH---HHHHHHHHHHh--------------------------- Q lcl|NC_001629. 1 MSLFNLSRR------AEDV-SFSTFTVQDPT----TDLL---LGKLLGLVSYF--------------------------- 39 (279) Q Consensus 1 ~~~~~~~~~------~~~~-~~~~~~~~~~~----~~~~---~~~~~~~~~~~--------------------------- 39 (279) |.+|+-.+. ..+. ++.+| +... .+.+ .-.+-+-|+-. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQRVTAW--QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) T ss_pred CccchhhhhhhcccccCCcceeeec--ccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccccccccccccccchHHH Confidence 666653321 1111 11111 2111 1111 11111212111 Q ss_pred -----hcccchhhhhhhhhhhhhh-cccee-eeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecccccc Q lcl|NC_001629. 40 -----DNVDYSEASKLEDLFFWAL-QGQEV-YRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGA 112 (279) Q Consensus 40 -----~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V 112 (279) -|-.-+-..-.+.+..+.+ .|.-. |.+|-|+. .+.+...+.| ..+++|.+||.-|-+|+. T Consensus 79 lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~---g~~~~l~~~~--------~~~~~~~~diih~r~~~~-- 145 (378) T protein:vir:16 79 VLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNT---GELLDLLFAD--------DKKEYKPEELVRLTSPFY-- 145 (378) T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCC---ceEEEEEecC--------CeeEecccceEEecCccC-- Confidence 1222222222333333333 45433 34454431 1111122222 357889999999999987 Q ss_pred ccchhhHHHHHHHHHhhhhhhccCceEEEEecCcccchH---HHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCc Q lcl|NC_001629. 113 NPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLK---EVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPD 189 (279) Q Consensus 113 ~~ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~e---e~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~D 189 (279) .......++.++.+|.+.+. +|++++.++.+-....+ +.+++.++.++++.. ++.-+|+.+++.|.++++|.-+ T Consensus 146 -~~~~~s~l~~~~~~i~~~~~-~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~g~~~~~l~~~ 222 (378) T protein:vir:16 146 -INEDTSILDNALASIQTKLE-QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQE-GSSYNGLTPVDNKTEIVELKKD 222 (378) T ss_pred -ccchhHHHHHHHHHHHHHHh-cCccceeeEeCCcCCHHHHHHHHHHHHHHHHHhhc-ccccccceEcCCCceEEEccCC Confidence 55667789999999988875 45688888888765543 445555555554443 3345799999999999999988 Q ss_pred cccccHHHHHHHHHHHHhhcCCcccccccccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCccc----- Q lcl|NC_001629. 190 YSGSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKI----- 264 (279) Q Consensus 190 YSts~~~die~lkS~LySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~----- 264 (279) -..+..+++++++++.+..||||..+|.|+++|++.++|+..+|.|++++.|. |+.++.++...+.-.. T Consensus 223 ~~~~~~~~~~~~~~~Ia~~fgVPp~~l~g~~~e~~~~~f~~~tl~P~~~~ie~------~l~~kLl~~~e~~~~~~~~~~ 296 (378) T protein:vir:16 223 YSVLNKDEIDLIKSELLTGYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEK------ELTYKLISTNRRRVVKGNLYY 296 (378) T ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHhcCCchHHHHHHHHHHHHHHHHHHHHH------HHHhhcCChhhhhhhhhcccc Confidence 77778889999999999999999999999999999999999999999999886 5566666654332111 Q ss_pred -----cccccccc--------------CCCC-CCC Q lcl|NC_001629. 265 -----ESKSSSRD--------------SEPL-GND 279 (279) Q Consensus 265 -----~s~~~~~~--------------~~~~-~~~ 279 (279) +...--|. +.-+ .|+ T Consensus 297 ~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE 331 (378) T protein:vir:16 297 ERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) T ss_pred cceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 11100000 0000 011 No 5 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=99.38 E-value=4.4e-15 Score=99.28 Aligned_cols=255 Identities=16% Similarity=0.226 Sum_probs=150.7 Q ss_pred Cc-cc-ccchhhccceeeeeee-cCcc--------hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccce-eeeee Q lcl|NC_001629. 1 MS-LF-NLSRRAEDVSFSTFTV-QDPT--------TDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQE-VYRVW 67 (279) Q Consensus 1 ~~-~~-~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 67 (279) .+ ++ -.++-|++|+=..|.+ .... ....-..+.=|...=-|-+.+-.+-.+.+..+. |.|.- +|-+| T Consensus 34 ~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~ 113 (378) T protein:vir:94 34 SAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIF 113 (378) T ss_pred hHHHHHHHHHHHHhHhhCceeeeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 00 00 1122334443322211 0000 000001111111222344445445455555544 34542 23344 Q ss_pred hh--hhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeeccccccccchhhHHHHHHHHHhhhhhhccCceEEEEecC Q lcl|NC_001629. 68 YG--GFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTK 145 (279) Q Consensus 68 ~~--~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ee~t~MLd~aLnaI~~KLeqqgslKifikL~ 145 (279) -+ |--|| ..++| ..+++|-+||.-+-+|++ ..+....++.++.++.+.+. +|+.++.++.+ T Consensus 114 ~~~~g~~~~-----~~~~~--------~~~~~~~~dvih~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~ 176 (378) T protein:vir:94 114 DSETGELLD-----LLFAN--------DKKEYKPEELVRLTSPFY---INEDTSILDNALASIQTKLE-QGKLRGLLKIN 176 (378) T ss_pred eCCCCcEEE-----EEEec--------CcEEechhceeeecCcCC---cccchhHHHHHHHHHHHHHh-hCCcccceeeC Confidence 21 21111 11122 236789999999999988 55677789999999988875 46788888888 Q ss_pred cccch---HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcCCccccccccccc Q lcl|NC_001629. 146 VSSGL---KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLYGQSNE 222 (279) Q Consensus 146 i~~~~---ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~GInekIL~GtaTe 222 (279) -.... ++.+++.++.++.+..-+ .-+|+.+++.|.++++|.-+......+++++++.+.+..||||..+|.|+++| T Consensus 177 ~~l~~~~~~~~~e~~~~~~~~~~~~~-n~~~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgvPp~~l~g~~~e 255 (378) T protein:vir:94 177 AFLDIDNTQEYREKALATIKNMQEGS-SYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGTATQ 255 (378) T ss_pred CcCCHHHHHHHHHHHHHHHHHhhccc-ccccceeccCCceEEEccCChHHhhHHHHHHHHHHHHHHhCCCHHHhcCCchH Confidence 76543 445555555555554444 34789999999999999988888888999999999999999999999999999 Q ss_pred ceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc------------------------------------Ccc--c Q lcl|NC_001629. 223 VTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK------------------------------------GGK--I 264 (279) Q Consensus 223 eqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~------------------------------------gg~--~ 264 (279) .|.++|+..+|.|+++++|.+|- ++.++...+ .|- + T Consensus 256 ~~~~~f~~~tl~P~~~~ie~~l~------~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~ 329 (378) T protein:vir:94 256 EQQIYFYNSTIIPLLIQLEKELT------YKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCH Confidence 99999999999999999776433 233222211 121 1 Q ss_pred ccccccccCCCCCC-C Q lcl|NC_001629. 265 ESKSSSRDSEPLGN-D 279 (279) Q Consensus 265 ~s~~~~~~~~~~~~-~ 279 (279) |-.-.-.+-+|+.+ | T Consensus 330 NE~R~~~g~~p~~ggd 345 (378) T protein:vir:94 330 NQLLVKMGEQPIEGGD 345 (378) T ss_pred HHHHHHhCCCCCCCCC Confidence 11112223334422 2 No 6 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=99.37 E-value=9e-15 Score=97.57 Aligned_cols=257 Identities=17% Similarity=0.211 Sum_probs=148.4 Q ss_pred Ccccccch-----------------------------------hhccceeeeeeec---------CcchhHHHHHHHHHH Q lcl|NC_001629. 1 MSLFNLSR-----------------------------------RAEDVSFSTFTVQ---------DPTTDLLLGKLLGLV 36 (279) Q Consensus 1 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 36 (279) |.+|+-.+ -|++|+=..|.+. |...-..-..+.-|+ T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CCccccchhcccccccCCcceeeeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCcccccccccccchHHHHH Confidence 66664321 2222221111110 000000000111112 Q ss_pred HHhhcccchhhhhhhhhhhh-hhcccee-eeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecccccccc Q lcl|NC_001629. 37 SYFDNVDYSEASKLEDLFFW-ALQGQEV-YRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANP 114 (279) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ 114 (279) ..=-|-..+-..-++.+..+ .+.|.-. |.+|-++.. +-+...++| -.+++|.+||.-|-+|+. . T Consensus 81 ~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g---~~~~l~p~~--------~~~~~~~~diiH~~~~~~---~ 146 (378) T protein:vir:94 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTG---ELLDLLFAD--------DKKEYKPEELVRLTSPFY---I 146 (378) T ss_pred hhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCc---eEEEEEecC--------CeeEeeeeeeEEecCcCC---c Confidence 22223333333334444444 3456433 344544321 011112222 256789999999999976 4 Q ss_pred chhhHHHHHHHHHhhhhhhccCceEEEEecCcccchH---HHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc Q lcl|NC_001629. 115 QRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLK---EVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS 191 (279) Q Consensus 115 ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~e---e~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS 191 (279) ......++.+..+|.+.+. .|++++.++.|-....+ +.+++.++.++.+.. +..-+|+.+++.|.++++|..+-. T Consensus 147 ~~g~s~l~~~~~~i~~~~~-~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~g~~~~~l~~~~~ 224 (378) T protein:vir:94 147 NEDTSILDNALASIQTKLE-QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQE-GSSYNGLTPVDNKTEIVELKKDYS 224 (378) T ss_pred cchhHHHHHHHHHHHHHHh-cccccceeeeCCcCCHHHHHHHHHHHHHHHHHhhc-ccccccceecCCCceEEEccCChh Confidence 5567789999999988875 46788889888765433 334444444444332 234578999999999999998888 Q ss_pred cccHHHHHHHHHHHHhhcCCcccccccccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc--C-------- Q lcl|NC_001629. 192 GSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK--G-------- 261 (279) Q Consensus 192 ts~~~die~lkS~LySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~--g-------- 261 (279) ....++.++++++.+..||||..+|.|+++++|.++|+..+|.|++++.|. |+.++.++...| | T Consensus 225 ~~~~~~~~~~~~~Ia~~fgVP~~~l~~~~se~~~~~f~~~tL~P~~~~ie~------~l~~~Ll~~~er~~g~~~~~~~~ 298 (378) T protein:vir:94 225 VLNKDEIDLIKSELLTGYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEK------ELTYKLISTNRRRVVKGNLYYER 298 (378) T ss_pred hhhHHHHHHHHHHHHHHhCCCHHHhcCChHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCChhHhhhhhhcccccc Confidence 888889999999999999999999999999999999999999999999887 444444443221 0 Q ss_pred ccccccccccc--------------CCCC-CCC Q lcl|NC_001629. 262 GKIESKSSSRD--------------SEPL-GND 279 (279) Q Consensus 262 g~~~s~~~~~~--------------~~~~-~~~ 279 (279) -+++...--|. +.-+ .|+ T Consensus 299 ~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE 331 (378) T protein:vir:94 299 IIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) T ss_pred eeecchhhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 01111111110 0011 011 No 7 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=99.29 E-value=5.2e-14 Score=93.40 Aligned_cols=254 Identities=18% Similarity=0.234 Sum_probs=142.8 Q ss_pred Ccccccc---hhh---ccceeeeeeecCcc----hhH---HHHHHHHHHHHh---------------------------- Q lcl|NC_001629. 1 MSLFNLS---RRA---EDVSFSTFTVQDPT----TDL---LLGKLLGLVSYF---------------------------- 39 (279) Q Consensus 1 ~~~~~~~---~~~---~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~---------------------------- 39 (279) |++|+-- .|+ .+.+ ++|+.+... .+. .+-.+-+-|+-. T Consensus 1 M~~f~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQ-RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEV 79 (378) T ss_pred CchhhhhhhhhhcccccCCc-ceeeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccccccccccchHHHH Confidence 8887721 111 1111 112211111 111 112222222211 Q ss_pred ----hcccchhhhhhhhhhhhh-hcccee-eeee--hhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeeccccc Q lcl|NC_001629. 40 ----DNVDYSEASKLEDLFFWA-LQGQEV-YRVW--YGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYG 111 (279) Q Consensus 40 ----~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~ 111 (279) -|.+.+-..-.+.+..+. +.|.-. |.++ ..|--+|. .++| ..++.+.+||-.+.+|+. T Consensus 80 L~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~-----~~~~--------~~~~~~~~dvih~~~~~~- 145 (378) T protein:vir:85 80 LNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDL-----LFAN--------DKKEYKPEELVRLVSPFY- 145 (378) T ss_pred HhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEE-----EecC--------CCEEEcccceEEEecCcC- Confidence 111111111222233333 334322 2233 12221211 1111 245677889999999987 Q ss_pred cccchhhHHHHHHHHHhhhhhhccCceEEEEecCcccch---HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccC Q lcl|NC_001629. 112 ANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGL---KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQP 188 (279) Q Consensus 112 V~~ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~---ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~ 188 (279) ......+++.++.++.+... .|+.+++++.+-.... ++.+++.++.+++... ++.-+|+.++++|.++++|.- T Consensus 146 --~~~~~~~~~~a~~~~~~~~~-~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~g~~~~~l~~ 221 (378) T protein:vir:85 146 --INEDTSILDNALASIQTKLE-QGKLRGLLKINAFLDIDNTQEYREKALATIKNMQE-GSSYNGLTPVDNKTEIVELKK 221 (378) T ss_pred --ccchhhHHHHHHHHHHHHHh-cCCcceEEEeCCcCCHHHHHHHHHHHHHHHHHhhc-ccccccceecCCCceEEeccC Confidence 56667789999999988875 4578899888876433 3334444444444333 345679999999999999987 Q ss_pred ccccccHHHHHHHHHHHHhhcCCcccccccccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc----- Q lcl|NC_001629. 189 DYSGSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK----- 263 (279) Q Consensus 189 DYSts~~~die~lkS~LySq~GInekIL~GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~----- 263 (279) +-.....+.+++++++.+..||||..+|.|+++|+|.++|+..+|.|+++++|. |..++.++...|.=. T Consensus 222 ~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~s~~e~~~~~f~~~tL~P~~~~ie~------~l~~kLl~~~er~~~~~~~~ 295 (378) T protein:vir:85 222 DYSVLNKDEIELIKSELLTGYFMNENILLGTATQEQQIYFYNSTIIPLLIQLEK------ELTYKLISTNRRRVVKGNLY 295 (378) T ss_pred ChhhhhHHHHHHHHHHHHHHhCCCHHHhcCCchHHHHHHHHHHHHHHHHHHHHH------HHHhhcCChhhhhhhhhccc Confidence 777677788899999999999999999999999999999999999999999887 444555544222100 Q ss_pred -----ccccccc--------------ccCCCC-CCC Q lcl|NC_001629. 264 -----IESKSSS--------------RDSEPL-GND 279 (279) Q Consensus 264 -----~~s~~~~--------------~~~~~~-~~~ 279 (279) ++...-- ....-+ .|+ T Consensus 296 ~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE 331 (378) T protein:vir:85 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) T ss_pred cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHH Confidence 0000000 000000 011 No 8 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.05 E-value=5.3e-12 Score=82.40 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=154.2 Q ss_pred Ccccc-cchhhccceee----ee---e----ecCcchhHHHHHHHHHHHHh----------------------hcccchh Q lcl|NC_001629. 1 MSLFN-LSRRAEDVSFS----TF---T----VQDPTTDLLLGKLLGLVSYF----------------------DNVDYSE 46 (279) Q Consensus 1 ~~~~~-~~~~~~~~~~~----~~---~----~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 46 (279) |++|+ |-+|.++..+. .+ + .+.|+..-.+-.+-+-|+-. -|...+- T Consensus 1 Mg~f~~lf~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~ 80 (395) T protein:vir:10 1 MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSS 80 (395) T ss_pred CchhhhhhccCccccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhccCcCCCH Confidence 88885 54555443321 11 0 12222222333333333311 2444444 Q ss_pred hhhhhhhhhhhhccceeeeeehhhhhhhhh-hccc-------chhhhhhcCCCccEEEEeecceeeee--cccccccc-c Q lcl|NC_001629. 47 ASKLEDLFFWALQGQEVYRVWYGGFKYYAQ-RVNA-------DQFNILVREPNRRQVTIRTSDYEMLL--NPFYGANP-Q 115 (279) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~v~~-------d~fN~~v~~~~~~~vtlP~SDV~iie--NPf~~V~~-e 115 (279) ..-++.+..|.+-|.+.|.+.-.+-..||- ++.+ +.|......+...+.++|-+||.-+- +|.....- . T Consensus 81 ~~f~~~~~~~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s 160 (395) T protein:vir:10 81 DSFWQQVIYKLIYDNEVLIVVSDSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVES 160 (395) T ss_pred HHHHHHHHHHHhhCCceEEEEecCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEEccCCCCcccccch Confidence 555677777777777766655332222221 1221 12221111222335678999998764 44321111 1 Q ss_pred hhhHHHHHHHHHhhhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCceeEEccCcccccc Q lcl|NC_001629. 116 RFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLARE-FNGVSVIGSDDDIKQIQPDYSGSL 194 (279) Q Consensus 116 e~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~-~~GvtYid~geei~QLq~DYSts~ 194 (279) ++.. +..++....+...+.|..++.++++-...+++-++++++.++++...... -.+|.+++.|.+++++.-.-..+. T Consensus 161 pi~~-~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:10 161 LFED-YGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSN 239 (395) T ss_pred HHHH-HHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccc Confidence 1111 22222222334456788999999998777899999999999888755431 234566899999999987766677 Q ss_pred HHHHHHH------HHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhhh--hhh------ Q lcl|NC_001629. 195 QNDANLA------IEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQENF--VAY------ 254 (279) Q Consensus 195 ~~die~l------kS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~f--v~y------ 254 (279) +++++++ +.+.+..||||..+|-|+++ +++.++|+..+|.|+++++|.+|.+ ..|.. ++| T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~ 319 (395) T protein:vir:10 240 MPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVN 319 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhh Confidence 7776655 45688999999999999987 9999999999999999998875543 11211 111 Q ss_pred ----------heecccCccc--ccccccccCCCCCC---C Q lcl|NC_001629. 255 ----------ISTTAKGGKI--ESKSSSRDSEPLGN---D 279 (279) Q Consensus 255 ----------~ttta~gg~~--~s~~~~~~~~~~~~---~ 279 (279) +++=-++|-+ |-.-.-.+-+|+.+ | T Consensus 320 ~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d 359 (395) T protein:vir:10 320 KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELD 359 (395) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 0000012211 11111112334322 2 No 9 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.05 E-value=5.3e-12 Score=82.40 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=154.2 Q ss_pred Ccccc-cchhhccceee----ee---e----ecCcchhHHHHHHHHHHHHh----------------------hcccchh Q lcl|NC_001629. 1 MSLFN-LSRRAEDVSFS----TF---T----VQDPTTDLLLGKLLGLVSYF----------------------DNVDYSE 46 (279) Q Consensus 1 ~~~~~-~~~~~~~~~~~----~~---~----~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 46 (279) |++|+ |-+|.++..+. .+ + .+.|+..-.+-.+-+-|+-. -|...+- T Consensus 1 Mg~f~~lf~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~ 80 (395) T protein:vir:95 1 MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSS 80 (395) T ss_pred CchhhhhhccCccccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhccCcCCCH Confidence 88885 54555443321 11 0 12222222333333333311 2444444 Q ss_pred hhhhhhhhhhhhccceeeeeehhhhhhhhh-hccc-------chhhhhhcCCCccEEEEeecceeeee--cccccccc-c Q lcl|NC_001629. 47 ASKLEDLFFWALQGQEVYRVWYGGFKYYAQ-RVNA-------DQFNILVREPNRRQVTIRTSDYEMLL--NPFYGANP-Q 115 (279) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~v~~-------d~fN~~v~~~~~~~vtlP~SDV~iie--NPf~~V~~-e 115 (279) ..-++.+..|.+-|.+.|.+.-.+-..||- ++.+ +.|......+...+.++|-+||.-+- +|.....- . T Consensus 81 ~~f~~~~~~~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s 160 (395) T protein:vir:95 81 DSFWQQVIYKLIYDNEVLIVVSDSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVES 160 (395) T ss_pred HHHHHHHHHHHhhCCceEEEEecCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEEccCCCCcccccch Confidence 555677777777777766655332222221 1221 12221111222335678999998764 44321111 1 Q ss_pred hhhHHHHHHHHHhhhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCceeEEccCcccccc Q lcl|NC_001629. 116 RFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLARE-FNGVSVIGSDDDIKQIQPDYSGSL 194 (279) Q Consensus 116 e~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~-~~GvtYid~geei~QLq~DYSts~ 194 (279) ++.. +..++....+...+.|..++.++++-...+++-++++++.++++...... -.+|.+++.|.+++++.-.-..+. T Consensus 161 pi~~-~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:95 161 LFED-YGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSN 239 (395) T ss_pred HHHH-HHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccc Confidence 1111 22222222334456788999999998777899999999999888755431 234566899999999987766677 Q ss_pred HHHHHHH------HHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhhh--hhh------ Q lcl|NC_001629. 195 QNDANLA------IEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQENF--VAY------ 254 (279) Q Consensus 195 ~~die~l------kS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~f--v~y------ 254 (279) +++++++ +.+.+..||||..+|-|+++ +++.++|+..+|.|+++++|.+|.+ ..|.. ++| T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~ 319 (395) T protein:vir:95 240 MPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVN 319 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhh Confidence 7776655 45688999999999999987 9999999999999999998875543 11211 111 Q ss_pred ----------heecccCccc--ccccccccCCCCCC---C Q lcl|NC_001629. 255 ----------ISTTAKGGKI--ESKSSSRDSEPLGN---D 279 (279) Q Consensus 255 ----------~ttta~gg~~--~s~~~~~~~~~~~~---~ 279 (279) +++=-++|-+ |-.-.-.+-+|+.+ | T Consensus 320 ~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d 359 (395) T protein:vir:95 320 KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELD 359 (395) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 0000012211 11111112334322 2 No 10 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.05 E-value=5.3e-12 Score=82.40 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=154.2 Q ss_pred Ccccc-cchhhccceee----ee---e----ecCcchhHHHHHHHHHHHHh----------------------hcccchh Q lcl|NC_001629. 1 MSLFN-LSRRAEDVSFS----TF---T----VQDPTTDLLLGKLLGLVSYF----------------------DNVDYSE 46 (279) Q Consensus 1 ~~~~~-~~~~~~~~~~~----~~---~----~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 46 (279) |++|+ |-+|.++..+. .+ + .+.|+..-.+-.+-+-|+-. -|...+- T Consensus 1 Mg~f~~lf~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~ 80 (395) T protein:vir:10 1 MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSS 80 (395) T ss_pred CchhhhhhccCccccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhccCcCCCH Confidence 88885 54555443321 11 0 12222222333333333311 2444444 Q ss_pred hhhhhhhhhhhhccceeeeeehhhhhhhhh-hccc-------chhhhhhcCCCccEEEEeecceeeee--cccccccc-c Q lcl|NC_001629. 47 ASKLEDLFFWALQGQEVYRVWYGGFKYYAQ-RVNA-------DQFNILVREPNRRQVTIRTSDYEMLL--NPFYGANP-Q 115 (279) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~v~~-------d~fN~~v~~~~~~~vtlP~SDV~iie--NPf~~V~~-e 115 (279) ..-++.+..|.+-|.+.|.+.-.+-..||- ++.+ +.|......+...+.++|-+||.-+- +|.....- . T Consensus 81 ~~f~~~~~~~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s 160 (395) T protein:vir:10 81 DSFWQQVIYKLIYDNEVLIVVSDSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVES 160 (395) T ss_pred HHHHHHHHHHHhhCCceEEEEecCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEEccCCCCcccccch Confidence 555677777777777766655332222221 1221 12221111222335678999998764 44321111 1 Q ss_pred hhhHHHHHHHHHhhhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCceeEEccCcccccc Q lcl|NC_001629. 116 RFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLARE-FNGVSVIGSDDDIKQIQPDYSGSL 194 (279) Q Consensus 116 e~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~-~~GvtYid~geei~QLq~DYSts~ 194 (279) ++.. +..++....+...+.|..++.++++-...+++-++++++.++++...... -.+|.+++.|.+++++.-.-..+. T Consensus 161 pi~~-~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:10 161 LFED-YGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSN 239 (395) T ss_pred HHHH-HHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccc Confidence 1111 22222222334456788999999998777899999999999888755431 234566899999999987766677 Q ss_pred HHHHHHH------HHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhhh--hhh------ Q lcl|NC_001629. 195 QNDANLA------IEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQENF--VAY------ 254 (279) Q Consensus 195 ~~die~l------kS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~f--v~y------ 254 (279) +++++++ +.+.+..||||..+|-|+++ +++.++|+..+|.|+++++|.+|.+ ..|.. ++| T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~ 319 (395) T protein:vir:10 240 MPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVN 319 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhh Confidence 7776655 45688999999999999987 9999999999999999998875543 11211 111 Q ss_pred ----------heecccCccc--ccccccccCCCCCC---C Q lcl|NC_001629. 255 ----------ISTTAKGGKI--ESKSSSRDSEPLGN---D 279 (279) Q Consensus 255 ----------~ttta~gg~~--~s~~~~~~~~~~~~---~ 279 (279) +++=-++|-+ |-.-.-.+-+|+.+ | T Consensus 320 ~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d 359 (395) T protein:vir:10 320 KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELD 359 (395) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 0000012211 11111112334322 2 No 11 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=98.92 E-value=1.4e-10 Score=74.54 Aligned_cols=277 Identities=16% Similarity=0.119 Sum_probs=138.1 Q ss_pred Cccccc-chhhccce----eeeee-------ecCcchhHHHHHHHHHHHHh----------------------hcccchh Q lcl|NC_001629. 1 MSLFNL-SRRAEDVS----FSTFT-------VQDPTTDLLLGKLLGLVSYF----------------------DNVDYSE 46 (279) Q Consensus 1 ~~~~~~-~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 46 (279) |++|+- -.|..+.+ ++.+. .+.|+-.-.+-.+-+-|+-. -|-..+- T Consensus 1 Mg~f~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~l~~lL~~~PN~~~t~ 80 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWMYDLEFLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEKGTLYYLLNVRPNRNQNA 80 (385) T ss_pred CchhhhhhccCcccccccchhhhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCccccchHHHHHhcccCcCCCH Confidence 555432 11111111 11111 01122111111121211111 1222233 Q ss_pred hhhhhhhhhhhhccceeeeeehhhhhhhh-------hhcccc---hhhhhhcCCCccEEEEeecceeeeeccccccccch Q lcl|NC_001629. 47 ASKLEDLFFWALQGQEVYRVWYGGFKYYA-------QRVNAD---QFNILVREPNRRQVTIRTSDYEMLLNPFYGANPQR 116 (279) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-------~~v~~d---~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ee 116 (279) ..-++.+..+.+-..+.|-+.-+.-.+++ .++... .++..+ .+.....++|-+||.-+-.|..... .- T Consensus 81 ~~f~~~~~~~l~l~Gna~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~eiih~~~~~~~~~-~~ 158 (385) T protein:vir:95 81 VDFWQKFIFKLIMDNEVLVVKNDEGHFFVADDFEKEDELGLYSHRFTNVLV-NDFEFKRVFTMDDVIYLKYNNQKLD-AF 158 (385) T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCeeeccccccccccccccccceeeee-cccceeeeeccccEEEecCCCCCcc-cc Confidence 33334444444433344433221112222 122111 112111 1223346789999988866543211 11 Q ss_pred hhHHHHHHHHHhhhhh---hccCceEEEEecCcc-cchHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCceeEEccCccc Q lcl|NC_001629. 117 FGVMFGMASNGIGRRL---DSQAQIKIYWKTKVS-SGLKEVWDRIRERLTQQQQLARE-FNGVSVIGSDDDIKQIQPDYS 191 (279) Q Consensus 117 ~t~MLd~aLnaI~~KL---eqqgslKifikL~i~-~~~ee~reqa~sRik~MqelA~~-~~GvtYid~geei~QLq~DYS 191 (279) -...+..+.++|+..+ ...|.+++.++++.. ..+++-+++.+++++++.+-++. -+++.+++.|.++++|..... T Consensus 159 G~s~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~ 238 (385) T protein:vir:95 159 SLGLFEDYGEIFGRMIDLQMLNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGA 238 (385) T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeeccccc Confidence 1233444444444333 336778999998753 35788888888888888755432 345889999999999987765 Q ss_pred c-ccHHHHHHHHH------HHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhh---hhhh- Q lcl|NC_001629. 192 G-SLQNDANLAIE------IALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQEN---FVAY- 254 (279) Q Consensus 192 t-s~~~die~lkS------~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~---fv~y- 254 (279) . .+.+|++++.+ +.+..||||..+|.|+++ +++..+|+..+|.|+++++|.+|.+ ..|. .++| T Consensus 239 ~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd 318 (385) T protein:vir:95 239 AQSAQQFSELNELKKTVLTDVARMIGVPPSLVLGEMADLEKTIESYLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIK 318 (385) T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEe Confidence 3 45666666544 488889999999999887 7889999999999999998775532 1111 0111 Q ss_pred ---------------heecccCccc--ccccccccCCCCC---CC Q lcl|NC_001629. 255 ---------------ISTTAKGGKI--ESKSSSRDSEPLG---ND 279 (279) Q Consensus 255 ---------------~ttta~gg~~--~s~~~~~~~~~~~---~~ 279 (279) +.+=-+.|-+ |-.-.--+-+|+. -| T Consensus 319 ~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd 363 (385) T protein:vir:95 319 VVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELD 363 (385) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 1110111211 1111111233431 12 No 12 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=98.84 E-value=1e-10 Score=75.33 Aligned_cols=275 Identities=9% Similarity=0.024 Sum_probs=143.0 Q ss_pred Cc---c-cccchhhccceeeeeeecCcch----hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeehhhhh Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVSFSTFTVQDPTT----DLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWYGGFK 72 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (279) +. + --+...|++++=..+.|.+++- |-.+-+| .. =-|...+-.+-++.+..+.+-.-+.|-+.-|--. T Consensus 42 l~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~~~~~~~~~~L---l~-~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~ 117 (394) T protein:vir:62 42 LQSSDVYELLQDISNQMVLADIVVEDEFGNEIKDDIALQI---LR-NPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQI 117 (394) T ss_pred hccHHHHHHHHHHHHhhcccceEEEcCCCcccchhhHHHH---hc-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeccee Confidence 00 0 0122334455545555544321 2112222 12 2466666666666666665544444444333333 Q ss_pred hhhhhcccchhhhhhcCCCccEEEEeecceeeee----ccccccccc-hhhHHHHHHHHH--hhhhh-hccCceEEEEec Q lcl|NC_001629. 73 YYAQRVNADQFNILVREPNRRQVTIRTSDYEMLL----NPFYGANPQ-RFGVMFGMASNG--IGRRL-DSQAQIKIYWKT 144 (279) Q Consensus 73 ~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iie----NPf~~V~~e-e~t~MLd~aLna--I~~KL-eqqgslKifikL 144 (279) +.|..|.+.+-...+..-.-...++|.+||..+- +|+++..+= .+...|+.++++ ...++ .+.+..++.+++ T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiih~r~~~~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~ 197 (394) T protein:vir:62 118 HLASNVFTELDDNLVEHFNIGGHEIPPCMIRHVKNIGADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNL 197 (394) T ss_pred eccccceEEECCceEEEEeeCCEEechhheEEecCcCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEe Confidence 4444443332111111112234678999998774 334433322 222334444443 33344 556679999998 Q ss_pred Ccccc-hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeE--EccCcc-ccccHHHHHHHHHHHHhhcCCccccccc-- Q lcl|NC_001629. 145 KVSSG-LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIK--QIQPDY-SGSLQNDANLAIEIALSEYGMPRELLYG-- 218 (279) Q Consensus 145 ~i~~~-~ee~reqa~sRik~MqelA~~~~GvtYid~geei~--QLq~DY-Sts~~~die~lkS~LySq~GInekIL~G-- 218 (279) +-... .++-+++.+++++++..-+.+-+++.++..|.+++ +|...- +....+-.++.+.+.+..||||..+|.+ T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 277 (394) T protein:vir:62 198 DAHINPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELI 277 (394) T ss_pred CCCCCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCC Confidence 87754 45667888888888877666778899999888665 554211 1111222346678899999999999854 Q ss_pred -ccccceehhhhhhhHHHHHHHhcccccc----hhhh---hhhh-----hee---------cccCcccc--cccccccCC Q lcl|NC_001629. 219 -QSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQEN---FVAY-----IST---------TAKGGKIE--SKSSSRDSE 274 (279) Q Consensus 219 -taTeeqkiAyy~stV~PLLkQyek~lvf----~~E~---fv~y-----~tt---------ta~gg~~~--s~~~~~~~~ 274 (279) +-.|++.++|+..+|.|+++++|.+|.+ .+|. ++.| +.. -.++|-+. -.-.-.+-+ T Consensus 278 ~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~ 357 (394) T protein:vir:62 278 KEDIEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVTYSNKTNIGYNLVRTAITSPDNVADMLGFP 357 (394) T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccCceEEEechhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Confidence 4457789999999999999998775543 1110 1110 000 00112111 111112233 Q ss_pred CCC----CC Q lcl|NC_001629. 275 PLG----ND 279 (279) Q Consensus 275 ~~~----~~ 279 (279) |++ ++ T Consensus 358 p~~~~~gd~ 366 (394) T protein:vir:62 358 KQNTKESQA 366 (394) T ss_pred CCCCCCCCe Confidence 331 11 No 13 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=98.81 E-value=2.7e-10 Score=73.00 Aligned_cols=271 Identities=12% Similarity=0.106 Sum_probs=133.0 Q ss_pred Cccc-ccchhhccceeeeeeecC---cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeehhhhhhhhh Q lcl|NC_001629. 1 MSLF-NLSRRAEDVSFSTFTVQD---PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWYGGFKYYAQ 76 (279) Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 76 (279) ..+| -++..|++++=..+.|.+ +..+-+ .=++-.=-|-+.+-..-++.+....+-.-+.|-++.+.-.|-|. T Consensus 41 ~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~~~~----~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~~~~~ 116 (395) T protein:vir:40 41 WAIDSCANKIANTLSCAEVLTYEKGEEVRKKN----WYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYIYVAD 116 (395) T ss_pred HHHHHHHHHHHHHHhhCceeeccCCccccchH----HHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCceeecC Confidence 0000 011222333322222211 111111 11111123444444444455555445445566444433333333 Q ss_pred hcccchhhhh------hc-CCCccEEEEeecceeeee------ccccccccchhhHHHHHHHHHhhhhhhccCceEEEEe Q lcl|NC_001629. 77 RVNADQFNIL------VR-EPNRRQVTIRTSDYEMLL------NPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWK 143 (279) Q Consensus 77 ~v~~d~fN~~------v~-~~~~~~vtlP~SDV~iie------NPf~~V~~ee~t~MLd~aLnaI~~KLeqqgslKifik 143 (279) .+.+...... |. .+..-+.++|.+||.-|- .|+...-.+....++..++++.. ..+..++.+. T Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~l~ 192 (395) T protein:vir:40 117 SFTKNDKSLYENTYTEVTLKDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAVNKYK----KLNSRKIIVK 192 (395) T ss_pred CccccccccccceeeeeeecCceeeeeeccccEEEeecCCCCccccchhHHHHHHHHHHHHHHHHH----hcCCCCceEE Confidence 3322211110 01 111124578888887763 23332222333344444443332 2344555544 Q ss_pred cCccc-chHHHHHHHHHHHHHHHHH-HHhcCCeeeccCCceeEEccCccccccHHHHHHHH----HHHHhhcCCcccccc Q lcl|NC_001629. 144 TKVSS-GLKEVWDRIRERLTQQQQL-AREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAI----EIALSEYGMPRELLY 217 (279) Q Consensus 144 L~i~~-~~ee~reqa~sRik~Mqel-A~~~~GvtYid~geei~QLq~DYSts~~~die~lk----S~LySq~GInekIL~ 217 (279) ++... .+++-+++++++++++.+- ...-+++.+++.|.++++|..+...+..-|...+. .+.+..||||..+|. T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~ 272 (395) T protein:vir:40 193 LKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK 272 (395) T ss_pred EecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc Confidence 43322 3456667777777776543 23456799999999999999877766666655444 567788999999999 Q ss_pred cccc--cceehhhhhhhHHHHHHHhcccccc---h-hh----hhhhh----------------heecccCccccc--ccc Q lcl|NC_001629. 218 GQSN--EVTIIAFAIQKVLPLLKQHDKNIVF---N-QE----NFVAY----------------ISTTAKGGKIES--KSS 269 (279) Q Consensus 218 GtaT--eeqkiAyy~stV~PLLkQyek~lvf---~-~E----~fv~y----------------~ttta~gg~~~s--~~~ 269 (279) |+++ +++..+|+..+|.|++++.|.+|-. . .| .++.| +.+-..+|-+.. .-. T Consensus 273 ~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~ 352 (395) T protein:vir:40 273 GDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLR 352 (395) T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHH Confidence 9888 8889999999999999998764432 1 11 11111 111111221111 111 Q ss_pred cccCCCCCC---C Q lcl|NC_001629. 270 SRDSEPLGN---D 279 (279) Q Consensus 270 ~~~~~~~~~---~ 279 (279) -.+-+|+.+ | T Consensus 353 ~~g~~pi~~~~gD 365 (395) T protein:vir:40 353 MIGREPVMSPETQ 365 (395) T ss_pred HhCCCCCCCCCCc Confidence 122344422 1 No 14 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=98.74 E-value=3.8e-10 Score=72.25 Aligned_cols=255 Identities=14% Similarity=0.121 Sum_probs=145.3 Q ss_pred Cccc---------------ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccceee Q lcl|NC_001629. 1 MSLF---------------NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQEVY 64 (279) Q Consensus 1 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 64 (279) .+.. -++.-|++++=..|.|.+...+-||- --|...+-..-++.+..+.+ .|.-.. T Consensus 33 ~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ll~--------~PN~~~t~~~f~~~~~~~l~l~Gn~~~ 104 (383) T protein:vir:10 33 MQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLE--------SPSSLIGRFSFWQGALMQLCLSGNDYI 104 (383) T ss_pred ccccccchhHhhcchHHHHHHHHHHHhhccCceeecccchhhhhh--------CCCCCCCHHHHHHHHHHHhhhcCCeEE Confidence 0000 12234555555556665544433321 13444455555666666665 455433 Q ss_pred eeehhhhhhhh-hhcccchh--h-----hhhcCCCccEEEEeecceeeee--cc-----cccccc-chhhHHHHHHHHH- Q lcl|NC_001629. 65 RVWYGGFKYYA-QRVNADQF--N-----ILVREPNRRQVTIRTSDYEMLL--NP-----FYGANP-QRFGVMFGMASNG- 127 (279) Q Consensus 65 ~~~~~~~~~y~-~~v~~d~f--N-----~~v~~~~~~~vtlP~SDV~iie--NP-----f~~V~~-ee~t~MLd~aLna- 127 (279) .+.-...++|| ..+.+.+. + .....++...+++|-+||.-|- || .++..+ +.....++.+..+ T Consensus 105 ~i~~~~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~ 184 (383) T protein:vir:10 105 PLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKAS 184 (383) T ss_pred EEEcCceeEeecCcceEEEEEcCCceEEEEEEcCCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHH Confidence 33323333333 22222210 0 0112234567889999998763 23 344432 2333334443333 Q ss_pred -hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc--HHHHHHHHH Q lcl|NC_001629. 128 -IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL--QNDANLAIE 203 (279) Q Consensus 128 -I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~--~~die~lkS 203 (279) ...++ .+.+..++.++++-...+++-+++.+++++++..- .+-+|+.+++.|.++++|..+-..+. .+-.++.+. T Consensus 185 ~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~ 263 (383) T protein:vir:10 185 KSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSAD 263 (383) T ss_pred HHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHH Confidence 33344 55667899999997777889999999999887654 45678999999999999986443332 234477789 Q ss_pred HHHhhcCCcccccccc-------cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCC Q lcl|NC_001629. 204 IALSEYGMPRELLYGQ-------SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPL 276 (279) Q Consensus 204 ~LySq~GInekIL~Gt-------aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~ 276 (279) +.++.||||..+|-++ ++-+|...++.++|.|++++.+.+ +.+++++. .++-... ..+ T Consensus 264 ~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~------l~~~l~~~-----~~~f~~~----~l~ 328 (383) T protein:vir:10 264 QISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDE------LRLKMNAP-----DLELDIK----DML 328 (383) T ss_pred HHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHHHHHHHH------HHHhhCCc-----eEEeech----hhh Confidence 9999999999999653 234666777889999999987763 33444321 1111100 011 Q ss_pred CCC Q lcl|NC_001629. 277 GND 279 (279) Q Consensus 277 ~~~ 279 (279) --| T Consensus 329 ~~d 331 (383) T protein:vir:10 329 DVD 331 (383) T ss_pred ccC Confidence 112 No 15 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=98.71 E-value=5e-10 Score=71.57 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=146.1 Q ss_pred Ccc-cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhhhhhhhh-h Q lcl|NC_001629. 1 MSL-FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGGFKYYAQ-R 77 (279) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~-~ 77 (279) ..+ --+++-|++++=..|.|-+...+.||- =-|-..+...-++.+..+. |.|.-...++-....++|- . T Consensus 47 ~~v~~~i~~ia~~ia~~p~~v~~~~~~~ll~--------~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~~~~~p~~~ 118 (385) T protein:vir:10 47 TNVYSVINRIASDVASAHFKTENTATLNRLE--------SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSD 118 (385) T ss_pred HHHHHHHHHHHHHHhhCceeeeccchhhhhh--------cCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCceeEeecCC Confidence 000 012344566665566665554433321 1244444444455555554 3566544444334444432 2 Q ss_pred cccchhh-------hhhcCCCccEEEEeecceeeeec--c-----cccccc-chhhHHHHHHHHH--hhhhh-hccCceE Q lcl|NC_001629. 78 VNADQFN-------ILVREPNRRQVTIRTSDYEMLLN--P-----FYGANP-QRFGVMFGMASNG--IGRRL-DSQAQIK 139 (279) Q Consensus 78 v~~d~fN-------~~v~~~~~~~vtlP~SDV~iieN--P-----f~~V~~-ee~t~MLd~aLna--I~~KL-eqqgslK 139 (279) +.+.+.- .....++..++++|.+||.-|-. | .++..+ +.....++.+..+ ...+. .+.+..+ T Consensus 119 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~ 198 (385) T protein:vir:10 119 VQINYLPGNMGIVYTVLESNDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (385) T ss_pred ceEEEEEcCCceEEEEEEcCCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 2222211 01123456788999999987742 2 233321 2222233333322 33344 4456689 Q ss_pred EEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc--HHHHHHHHHHHHhhcCCcccccc Q lcl|NC_001629. 140 IYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL--QNDANLAIEIALSEYGMPRELLY 217 (279) Q Consensus 140 ifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~--~~die~lkS~LySq~GInekIL~ 217 (279) +.++++-...+++-+++++++++++..- .+-+++.+++.|.++++|...-..+. .+..++.+.+.+..||||..++- T Consensus 199 gil~~~~~~~~~e~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg 277 (385) T protein:vir:10 199 GKLTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILG 277 (385) T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcC Confidence 9999987767788999999999988754 45688999999999999976444333 24457778899999999999996 Q ss_pred cc-------cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 218 GQ-------SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 218 Gt-------aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) ++ ++-||...+|..++.|++++.+.+| .+++++.. ++-. ..+-+--| T Consensus 278 ~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l------~~~l~~~~-----~~f~----~~~ll~~d 331 (385) T protein:vir:10 278 GGTSTESQHSNIDQIKATYLANLNSYVNPIVDEL------RLKMNAPD-----LELD----IKDMLDVD 331 (385) T ss_pred CccCCCcccccHHHHHHHHHHHHHHHHHHHHHHH------HHhhCCce-----EEee----chhhhccC Confidence 53 3346777888899999999987744 34444321 1100 00111112 No 16 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=98.64 E-value=1.4e-09 Score=69.17 Aligned_cols=271 Identities=13% Similarity=0.116 Sum_probs=142.2 Q ss_pred Cc---c-cccchhhccceeeeeee----cCcchh-H-HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeee-e- Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVSFSTFTV----QDPTTD-L-LLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRV-W- 67 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~- 67 (279) |. . --.++.|++++=..|.+ .|.... . .-..+.-|+..--|...+-..-++.+..+. +.|.-...+ | T Consensus 58 l~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~ 137 (424) T protein:vir:18 58 LQISTVWRCVSLISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRN 137 (424) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEC Confidence 10 0 11234455555444443 111000 0 001122223333455555444445544333 334432222 1 Q ss_pred hhh--hhhh---hhhcccchhhhh----hcCCCccEEEEeecceeeeeccc----ccccc-chhhHHHH--HHHHHhhhh Q lcl|NC_001629. 68 YGG--FKYY---AQRVNADQFNIL----VREPNRRQVTIRTSDYEMLLNPF----YGANP-QRFGVMFG--MASNGIGRR 131 (279) Q Consensus 68 ~~~--~~~y---~~~v~~d~fN~~----v~~~~~~~vtlP~SDV~iieNPf----~~V~~-ee~t~MLd--~aLnaI~~K 131 (279) ..| .+.| |.+|.++..+-- +. .+.+.+++|-+||.-|-+|- ++..+ +.+...++ .+......+ T Consensus 138 ~~G~~~~L~pl~~~~V~v~~~~~~~~y~~~-~~g~~~~~~~~eIih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~ 216 (424) T protein:vir:18 138 SAGDVISLLPLQSANMDVKLVGKKVVYRYQ-RDSEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRD 216 (424) T ss_pred CCCcEEEEEEecCcceEEEEcCCeEEEEEE-eCCeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 112 1233 344555433211 11 22346789999998775432 33222 12222233 333334444 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~ 209 (279) + .+.+...++++.|-..-+++-+++++++.+++.. +.+-+|+.++++|-++++|.-.-..+ ..+-..+.+.+.+..| T Consensus 217 ~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~~-g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~f 295 (424) T protein:vir:18 217 FFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAG-GPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFF 295 (424) T ss_pred HHHccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhC-CcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHh Confidence 4 5566799999998777788999999999888764 34457899999999999995321111 1223356778889999 Q ss_pred CCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-cc--------------- Q lcl|NC_001629. 210 GMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IE--------------- 265 (279) Q Consensus 210 GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~--------------- 265 (279) |||..++- |+..|++.++|+..+|.|++++.|. |..++.++...++|. ++ T Consensus 296 gVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~------~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~ 369 (424) T protein:vir:18 296 GVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWEN------SIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRA 369 (424) T ss_pred CCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCccccCCeEEEEechhhhccCHHHHH Confidence 99998882 3445888999999999999999876 444444444333221 11 Q ss_pred ---------------cccccccCCCC-CCC Q lcl|NC_001629. 266 ---------------SKSSSRDSEPL-GND 279 (279) Q Consensus 266 ---------------s~~~~~~~~~~-~~~ 279 (279) -.-.--+-+|+ |-| T Consensus 370 ~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD 399 (424) T protein:vir:18 370 AFMKAMGEAGLRTINEMRRTDNLPPLPGGD 399 (424) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 01111112222 111 No 17 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=98.62 E-value=2.1e-09 Score=68.12 Aligned_cols=277 Identities=15% Similarity=0.108 Sum_probs=129.1 Q ss_pred Ccccc-c-chhhc-----cce-eeeeee----cCcchhHHHHHHHHHHH----------------------Hhhcccchh Q lcl|NC_001629. 1 MSLFN-L-SRRAE-----DVS-FSTFTV----QDPTTDLLLGKLLGLVS----------------------YFDNVDYSE 46 (279) Q Consensus 1 ~~~~~-~-~~~~~-----~~~-~~~~~~----~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 46 (279) |++|+ | .|+.+ |++ |...+. +.++..-.+-.+-+-++ .=-|-.-+- T Consensus 1 Mg~f~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~l~~ll~~~PN~~~t~ 80 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWMWDLDFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGETSVRDKLYYKLNIRPNTDMSS 80 (376) T ss_pred CchhhhhhccCCccccccchhhccccchhhhhhhHHHHHHHHHHHHhhcccceeeccccccccchHHHHHhhccccCCCH Confidence 88875 2 22221 100 001110 01111111111111110 011222233 Q ss_pred hhhhhhhhhhhh-ccceeeeeehhhhhhhhhhcccch-------hhhhhcCCCccEEEEeecceeeeeccccccccchhh Q lcl|NC_001629. 47 ASKLEDLFFWAL-QGQEVYRVWYGGFKYYAQRVNADQ-------FNILVREPNRRQVTIRTSDYEMLLNPFYGANPQRFG 118 (279) Q Consensus 47 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~~v~~d~-------fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~ee~t 118 (279) ..-++.+..+.+ .|.-...++..|--+-+..+.+++ |......+-..+.++|-+||.-+--+. ....... T Consensus 81 ~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~~~~~--~~~~~~~ 158 (376) T protein:vir:78 81 SSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVFEGVTVKDYRYNRNFSMDDVIFLEYGN--ERLSAFT 158 (376) T ss_pred HHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeeeeeeeeecceeeeeeccccEEEeccCC--CCchhhh Confidence 333344444444 344332333344333222222222 221111122234567778876653111 1111111 Q ss_pred -HHHHHHHHHhhh---hhhccCceEEEEecCcc-cchHHHHHHHHHHHHHHHHHHH-hcCCeeeccCCceeEEccCcccc Q lcl|NC_001629. 119 -VMFGMASNGIGR---RLDSQAQIKIYWKTKVS-SGLKEVWDRIRERLTQQQQLAR-EFNGVSVIGSDDDIKQIQPDYSG 192 (279) Q Consensus 119 -~MLd~aLnaI~~---KLeqqgslKifikL~i~-~~~ee~reqa~sRik~MqelA~-~~~GvtYid~geei~QLq~DYSt 192 (279) .+...+-..+.. .....+.+++.++++.. ..+++-+++++++++++..-.. .-.++.+++.|-+++++...-.. T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~ 238 (376) T protein:vir:78 159 DGMFEDYGELFGKMIRAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVN 238 (376) T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccc Confidence 111111111222 22235667777766543 2456666777777777765432 33557889999999999888777 Q ss_pred ccHHHHHHH------HHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhhhhhhheeccc Q lcl|NC_001629. 193 SLQNDANLA------IEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQENFVAYISTTAK 260 (279) Q Consensus 193 s~~~die~l------kS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~fv~y~ttta~ 260 (279) .++++++++ +.+.+..||||..+|-|+++ +++.++|+..+|.|++++.|.+|.. ..|.+..|-..-.- T Consensus 239 ~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll 318 (376) T protein:vir:78 239 NSQSFDEVKKLRKEMIDYVASILGIPSSLLHGDMADLSNNMKAYMEYCIDPLTKKLEDELNAKLFTFSEFLAGEHIKIIH 318 (376) T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccceecccchhhc Confidence 777777766 44689999999999999888 8889999999999999998874432 22222222111000 Q ss_pred Ccccccccc----cccCCCC-CCC Q lcl|NC_001629. 261 GGKIESKSS----SRDSEPL-GND 279 (279) Q Consensus 261 gg~~~s~~~----~~~~~~~-~~~ 279 (279) -+-+.++.. .....-+ .|+ T Consensus 319 ~~d~~~~~~~~~~~~~~G~~t~NE 342 (376) T protein:vir:78 319 KKDIIENAEAVDKLVASGSFNRNE 342 (376) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHH Confidence 000000000 0000000 000 No 18 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=98.62 E-value=1.8e-09 Score=68.49 Aligned_cols=271 Identities=12% Similarity=0.085 Sum_probs=141.4 Q ss_pred Ccc----cccchhhccceeeeeeec----Ccch-hH-HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeeh- Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ----DPTT-DL-LLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWY- 68 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 68 (279) |.+ --.+..|++++=..+.|- |... .. .-..+.-|+..=-|...+-..-++.+..+. +.|.-...+.. T Consensus 58 l~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~ 137 (424) T protein:vir:18 58 LQISTVWRCVSLISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRN 137 (424) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEC Confidence 110 012334455543333331 1100 00 001122233333455555555455555443 34543222221 Q ss_pred -hh--hhhh---hhhcccchhhh----hhcCCCccEEEEeecceeeeeccc----cccccc-hhhHH--HHHHHHHhhhh Q lcl|NC_001629. 69 -GG--FKYY---AQRVNADQFNI----LVREPNRRQVTIRTSDYEMLLNPF----YGANPQ-RFGVM--FGMASNGIGRR 131 (279) Q Consensus 69 -~~--~~~y---~~~v~~d~fN~----~v~~~~~~~vtlP~SDV~iieNPf----~~V~~e-e~t~M--Ld~aLnaI~~K 131 (279) +| .++| |..|.++..+- -+. .+.+.+++|-+||..|-+|- ++..+= .+... +..+......+ T Consensus 138 ~~G~~~~L~~l~~~~v~v~~~~~~~~y~~~-~~g~~~~~~~~eVihir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~ 216 (424) T protein:vir:18 138 SAGDVISLLPLQSANMDVKLVGKKVVYRYQ-RDSEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRD 216 (424) T ss_pred CCCcEEEEEEecCcceEEEEcCCeEEEEEE-eCCeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 22 1333 34455443221 011 23356789999998885443 332221 11122 22333334444 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~ 209 (279) + .+.++..++++.|-...+++-+++++++.+++... .+-+|+.+++.|-++++|.-.-.-+ ..+-..+.+.+.+..| T Consensus 217 ~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~-~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~f 295 (424) T protein:vir:18 217 FFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAGG-PVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFF 295 (424) T ss_pred HHhccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhCC-cccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHh Confidence 4 55667999999987777888899999888877643 3457899999999999995321111 1223356777888999 Q ss_pred CCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-cc--------------- Q lcl|NC_001629. 210 GMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IE--------------- 265 (279) Q Consensus 210 GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~--------------- 265 (279) |||..++- |+..|++.++|+..+|.|++++.|. |.+++.++...++|- ++ T Consensus 296 gVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~------~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~ 369 (424) T protein:vir:18 296 GVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWEN------SIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRA 369 (424) T ss_pred CCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCccccCCeEEEEechhhhccCHHHHH Confidence 99999882 2445888999999999999999776 444555544333221 10 Q ss_pred ---------------cccccccCCCCC-CC Q lcl|NC_001629. 266 ---------------SKSSSRDSEPLG-ND 279 (279) Q Consensus 266 ---------------s~~~~~~~~~~~-~~ 279 (279) -.-.--+-+|+. -| T Consensus 370 ~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD 399 (424) T protein:vir:18 370 AFMKAMGESGLRTINEMRRTDNMPPLPGGD 399 (424) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 000011112221 11 No 19 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=98.61 E-value=1.7e-09 Score=68.69 Aligned_cols=263 Identities=11% Similarity=0.069 Sum_probs=137.1 Q ss_pred Cc---cc-ccchhhccceeeeeeecCc----chhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDP----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (279) |. .| -.+.-|++++=..+.+-+- ..+- +.-|+-.=-|-..+-..-++.+..+ .+.|.....++.++. T Consensus 43 l~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~~~----~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~ 118 (416) T protein:vir:81 43 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR----IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKT 118 (416) T ss_pred hcchHHHHHHHHHHHhhccCceEEecCccccccch----HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 00 00 1233344444333332110 1111 1111112233333333444555543 455665444443332 Q ss_pred ----hhh---hhhcccc--hhhh------hhc-CCCccEEEEeecceeeee----cccccccc-chhhHHHHHHH--HHh Q lcl|NC_001629. 72 ----KYY---AQRVNAD--QFNI------LVR-EPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFGMAS--NGI 128 (279) Q Consensus 72 ----~~y---~~~v~~d--~fN~------~v~-~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd~aL--naI 128 (279) +.| |.+|.+. .... .+. .+...+.++|-+||.-|- +++++..+ +.+...++.+. ... T Consensus 119 G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~ 198 (416) T protein:vir:81 119 GEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDF 198 (416) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHH Confidence 222 2333321 1111 111 234556789999998773 44454443 23333344333 333 Q ss_pred hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH------ Q lcl|NC_001629. 129 GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA------ 201 (279) Q Consensus 129 ~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l------ 201 (279) ..++ .+.+..++.++++-...+++-+++++++.+++..-+++-+|+.+++.|.++++|. .+..|++++ T Consensus 199 ~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~-----~~~~d~q~~e~~~~~ 273 (416) T protein:vir:81 199 LNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE-----VDTEVLKLIRENKSS 273 (416) T ss_pred HHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEecc-----CCHHHHHHHHHHHHH Confidence 3444 6667799999999877788889999998888876666668899999999999995 345566555 Q ss_pred HHHHHhhcCCccccccc---ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCccccc------------ Q lcl|NC_001629. 202 IEIALSEYGMPRELLYG---QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIES------------ 266 (279) Q Consensus 202 kS~LySq~GInekIL~G---taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s------------ 266 (279) +.+.+..||||..+|.+ +++.+|...+|-.+|+|++++.+.+|-+ +.++. ..|-.++- T Consensus 274 ~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~l~P~~~~ie~~ln~------~l~~~-~~~~~~~f~~~~l~~~D~~~ 346 (416) T protein:vir:81 274 TREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKPYITCVCAELNF------KFNDE-YVNREFKFDTTEIRVVDEKT 346 (416) T ss_pred HHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhh------hcccc-ccCceEEEechhhhccCHHH Confidence 55788999999999842 2333455555667999999998774433 22221 00101100 Q ss_pred ---------------cccc---ccCCCCCC-C Q lcl|NC_001629. 267 ---------------KSSS---RDSEPLGN-D 279 (279) Q Consensus 267 ---------------~~~~---~~~~~~~~-~ 279 (279) -..- -+-+|+.+ | T Consensus 347 ~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:81 347 QAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 0000 11122211 1 No 20 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=98.61 E-value=1.7e-09 Score=68.69 Aligned_cols=263 Identities=11% Similarity=0.069 Sum_probs=137.1 Q ss_pred Cc---cc-ccchhhccceeeeeeecCc----chhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDP----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (279) |. .| -.+.-|++++=..+.+-+- ..+- +.-|+-.=-|-..+-..-++.+..+ .+.|.....++.++. T Consensus 43 l~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~~~----~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~ 118 (416) T protein:vir:45 43 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR----IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKT 118 (416) T ss_pred hcchHHHHHHHHHHHhhccCceEEecCccccccch----HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 00 00 1233344444333332110 1111 1111112233333333444555543 455665444443332 Q ss_pred ----hhh---hhhcccc--hhhh------hhc-CCCccEEEEeecceeeee----cccccccc-chhhHHHHHHH--HHh Q lcl|NC_001629. 72 ----KYY---AQRVNAD--QFNI------LVR-EPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFGMAS--NGI 128 (279) Q Consensus 72 ----~~y---~~~v~~d--~fN~------~v~-~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd~aL--naI 128 (279) +.| |.+|.+. .... .+. .+...+.++|-+||.-|- +++++..+ +.+...++.+. ... T Consensus 119 G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~ 198 (416) T protein:vir:45 119 GEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDF 198 (416) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHH Confidence 222 2333321 1111 111 234556789999998773 44454443 23333344333 333 Q ss_pred hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH------ Q lcl|NC_001629. 129 GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA------ 201 (279) Q Consensus 129 ~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l------ 201 (279) ..++ .+.+..++.++++-...+++-+++++++.+++..-+++-+|+.+++.|.++++|. .+..|++++ T Consensus 199 ~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~-----~~~~d~q~~e~~~~~ 273 (416) T protein:vir:45 199 LNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE-----VDTEVLKLIRENKSS 273 (416) T ss_pred HHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEecc-----CCHHHHHHHHHHHHH Confidence 3444 6667799999999877788889999998888876666668899999999999995 345566555 Q ss_pred HHHHHhhcCCccccccc---ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCccccc------------ Q lcl|NC_001629. 202 IEIALSEYGMPRELLYG---QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIES------------ 266 (279) Q Consensus 202 kS~LySq~GInekIL~G---taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s------------ 266 (279) +.+.+..||||..+|.+ +++.+|...+|-.+|+|++++.+.+|-+ +.++. ..|-.++- T Consensus 274 ~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~l~P~~~~ie~~ln~------~l~~~-~~~~~~~f~~~~l~~~D~~~ 346 (416) T protein:vir:45 274 TREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKPYITCVCAELNF------KFNDE-YVNREFKFDTTEIRVVDEKT 346 (416) T ss_pred HHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhh------hcccc-ccCceEEEechhhhccCHHH Confidence 55788999999999842 2333455555667999999998774433 22221 00101100 Q ss_pred ---------------cccc---ccCCCCCC-C Q lcl|NC_001629. 267 ---------------KSSS---RDSEPLGN-D 279 (279) Q Consensus 267 ---------------~~~~---~~~~~~~~-~ 279 (279) -..- -+-+|+.+ | T Consensus 347 ~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:45 347 QAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 0000 11122211 1 No 21 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=98.61 E-value=1.6e-09 Score=68.75 Aligned_cols=267 Identities=13% Similarity=0.118 Sum_probs=144.5 Q ss_pred Cc---c-cccchhhccceeeeeeec--Ccc-hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccce-eeeeehhhh Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVSFSTFTVQ--DPT-TDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQE-VYRVWYGGF 71 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 71 (279) |. . --++..|++++=..+.|. +.. .-..-..+.-|+..--|-..+-..-++.+..+. |.|.- ++-+|-+|. T Consensus 67 l~~~~V~~ci~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~ 146 (431) T protein:vir:10 67 LRNMAVLRCVTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNR 146 (431) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCc Confidence 00 0 012233444443333221 100 000001222333334555555555566665554 45653 334454442 Q ss_pred --hhhh---hhccc--chhhhh---hcCCCccEEEEeecceeeeec----cccccccc-hhhHH--HHHHHHHhhhhh-h Q lcl|NC_001629. 72 --KYYA---QRVNA--DQFNIL---VREPNRRQVTIRTSDYEMLLN----PFYGANPQ-RFGVM--FGMASNGIGRRL-D 133 (279) Q Consensus 72 --~~y~---~~v~~--d~fN~~---v~~~~~~~vtlP~SDV~iieN----Pf~~V~~e-e~t~M--Ld~aLnaI~~KL-e 133 (279) +.+| .+|.+ +.-+.. +..++.+++++|-+||.-|-+ ++++..+= ..... +..+......++ . T Consensus 147 ~~~L~pl~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ 226 (431) T protein:vir:10 147 PIRLIPMDRGSAKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFR 226 (431) T ss_pred eEEEEEEcCceeEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 2222 33332 222222 234566778999999987754 33443321 12222 444444455566 5 Q ss_pred ccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHH------HHHHHHh Q lcl|NC_001629. 134 SQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANL------AIEIALS 207 (279) Q Consensus 134 qqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~------lkS~LyS 207 (279) +.+...+.+++|-.. +++-+++++++.++...-+++-+|+.+++.|-++++|.. +..|+++ .+++.+. T Consensus 227 ng~~p~gil~~~~~l-s~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~-----~~~d~q~le~r~~~~~~Ia~ 300 (431) T protein:vir:10 227 TGVMAGGAIEVPKEL-SDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSN-----TAASAQQIENRNHQIEEVAR 300 (431) T ss_pred ccCCccEEEecCCCC-CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccC-----ChhHHHHHHHHHHhHHHHHH Confidence 555688889998764 445567777777777665667789999999999999963 3344444 4678899 Q ss_pred hcCCcccccccc------cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc------------------ Q lcl|NC_001629. 208 EYGMPRELLYGQ------SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK------------------ 263 (279) Q Consensus 208 q~GInekIL~Gt------aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~------------------ 263 (279) .||||..+|-+. ..|++.++|+..++.|++++.|. |+++++++...++|. T Consensus 301 ~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~------~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~ 374 (431) T protein:vir:10 301 MYGVPRPLLMMDDTSWGSGIEQLAIFFIQYGLSHWFVSWEQ------AAARAFLPEKMLGQRQFKFNEGALLRGTLNDQA 374 (431) T ss_pred HhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH------HHHhhccChhhcCCceEEEechhhhccCHHHHH Confidence 999999999643 34778899999999999999876 334444433222221 Q ss_pred -----------------cccccccccCCCCCCC Q lcl|NC_001629. 264 -----------------IESKSSSRDSEPLGND 279 (279) Q Consensus 264 -----------------~~s~~~~~~~~~~~~~ 279 (279) +|-.-.--+-+|+.+. T Consensus 375 ~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~ 407 (431) T protein:vir:10 375 AFFSKALGAGGQSPWMKQNEVREMLDLPRADDP 407 (431) T ss_pred HHHHHHHhcccccCccCHHHHHHHhCCCCCCCc Confidence 1111112222333221 No 22 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=98.58 E-value=3.3e-09 Score=67.11 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=143.6 Q ss_pred Ccc---c-ccchhhccce---eeeeeecCcchh-HHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccce-eeeeehhh Q lcl|NC_001629. 1 MSL---F-NLSRRAEDVS---FSTFTVQDPTTD-LLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQE-VYRVWYGG 70 (279) Q Consensus 1 ~~~---~-~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 70 (279) +.. | -+++-|++++ |..+...+.... ..=..+.-|+..--|...+-..-++.++.+ .+.|.- ++-++-+| T Consensus 43 l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g 122 (413) T protein:vir:48 43 MRLTAVYSCVRVLAESVGMLPCSLYKISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALG 122 (413) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEEecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCC Confidence 000 0 1223344443 333332221110 001123333334456666666666666644 344543 12222233 Q ss_pred h--hhh---hhhccc--chhhh---hhcCCCccEEEEeecceeeeecc----cccccc-chhhHHHHHHHHHh--hhh-h Q lcl|NC_001629. 71 F--KYY---AQRVNA--DQFNI---LVREPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGMASNGI--GRR-L 132 (279) Q Consensus 71 ~--~~y---~~~v~~--d~fN~---~v~~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~aLnaI--~~K-L 132 (279) . +.| |.+|.+ +.-+. -+.-+.....++|-++|..|-.+ .++..+ +....-|+.++++- ..+ . T Consensus 123 ~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~ 202 (413) T protein:vir:48 123 EVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVLTQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLF 202 (413) T ss_pred cEEEEEEEcCceEEEEEcCCceEEEEEEecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 122 122221 11111 11234445678999999988643 333322 12222244443332 222 2 Q ss_pred hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhcCC Q lcl|NC_001629. 133 DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGM 211 (279) Q Consensus 133 eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~GI 211 (279) .+.+..++.++++-.. +++-+++.+++++++..-+++-+++.+++.|.++++|.....-+ ..+-.++.+.+.+..||| T Consensus 203 ~ng~~p~gil~~~~~~-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgV 281 (413) T protein:vir:48 203 GNGAVTSGVLRTEQKL-TPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRV 281 (413) T ss_pred hccCCcceEEEeCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCC Confidence 5566789999998774 56667888888887775556678999999999999997543322 234556788999999999 Q ss_pred cccccc----cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-c-------------------- Q lcl|NC_001629. 212 PRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-I-------------------- 264 (279) Q Consensus 212 nekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~-------------------- 264 (279) |..+|- ++++ |++.++|+..+|.|++++++.+ ++++.++...++|- + T Consensus 282 Pp~~lg~~~~~t~~n~e~~~~~f~~~~i~P~~~~ie~~------l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~ 355 (413) T protein:vir:48 282 PLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQR------INTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYA 355 (413) T ss_pred CHHHhCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHH------HHhhccCccccCCeEEEEechhhhccCHHHHHHHHH Confidence 998884 2222 7889999999999999998764 34444443333221 1 Q ss_pred ----------ccccccccCCCC-CCC Q lcl|NC_001629. 265 ----------ESKSSSRDSEPL-GND 279 (279) Q Consensus 265 ----------~s~~~~~~~~~~-~~~ 279 (279) |-.-.--.-+|+ |.| T Consensus 356 ~~~~~g~~T~NE~R~~~g~~p~~ggD 381 (413) T protein:vir:48 356 TGINWGIYSPNDCRDLEDMNPRPGGD 381 (413) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 000001111222 111 No 23 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=98.57 E-value=3.5e-09 Score=66.91 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=139.2 Q ss_pred Cc---c-cccchhhccce---eeeeeecC-c----chhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeee-e Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVS---FSTFTVQD-P----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYR-V 66 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 66 (279) |. . --++..|++|+ |..+...+ . .++ ..+.-|+..=-|...+-.+-.+.+..+ .|.|.-... + T Consensus 52 l~~~~v~~ci~~Ia~~ia~lp~~~~~~~~~g~~~~~~~---~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~ 128 (437) T protein:vir:10 52 LQLSAVWSCVRLIAETIATLPLNLYQTKPDGTRVLAKQ---HRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKL 128 (437) T ss_pred hccHHHHHHHHHHHHHHhhCceeEEEEcCCCceeeccc---cHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 00 0 01223334433 22222110 0 011 011111111134444444445555544 345654222 2 Q ss_pred ehhhh--hhh---hhhcccchh--hhh---hcCCCccEEEEeecceeeeec----cccccccc-hhhHHHHHHH--HHhh Q lcl|NC_001629. 67 WYGGF--KYY---AQRVNADQF--NIL---VREPNRRQVTIRTSDYEMLLN----PFYGANPQ-RFGVMFGMAS--NGIG 129 (279) Q Consensus 67 ~~~~~--~~y---~~~v~~d~f--N~~---v~~~~~~~vtlP~SDV~iieN----Pf~~V~~e-e~t~MLd~aL--naI~ 129 (279) +-+|- .+| |.+|.+..- ++. +..++...+++|-+||.-|-+ |+++..+= ....-++.++ ..-. T Consensus 129 r~~g~~~~L~~l~p~~v~i~~~~~g~~~y~~~~~~g~~~~~~~~dIih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~ 208 (437) T protein:vir:10 129 RSAGVLIGLELMLPQRTTVKRLTSGALQYTYRNVDGTVSTLAEDDVFHVRGFSLDGLMGLTPIQYAREVLGNSTAANKTS 208 (437) T ss_pred ecCCcEEEEEEEcCcceEEEECCCCeEEEEEEecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHH Confidence 22221 122 244444321 111 233455678899999988743 45544321 2222233332 2333 Q ss_pred hhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc-HHHHHHHHHHHHh Q lcl|NC_001629. 130 RRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALS 207 (279) Q Consensus 130 ~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~-~~die~lkS~LyS 207 (279) .++ .+.+..++.++++-.. +++-+++++++.+++..-+.+-+|+.+++.|.++++|...-..+. .+-.++.+...+. T Consensus 209 ~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~ 287 (437) T protein:vir:10 209 ASVFRNGLRPSGVLSTDQIL-QKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICR 287 (437) T ss_pred HHHHhccCCccEEEEcCCCC-CHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Confidence 333 5566799999998764 455668888888877666666688999999999999974332222 3333456788999 Q ss_pred hcCCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCc-ccc------------- Q lcl|NC_001629. 208 EYGMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGG-KIE------------- 265 (279) Q Consensus 208 q~GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg-~~~------------- 265 (279) .||||..+|- ++..|++.++|+..+|.|+++++|-+| .++.++...+++ .++ T Consensus 288 ~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l------~~kll~~~e~~~~~~~fd~~~ll~~d~~~ 361 (437) T protein:vir:10 288 WYRVPPFMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAA------RRSLLRPGERDQFYAEFSVEGLLRADSAG 361 (437) T ss_pred HhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH------HhhccCccccCceEEEEechhhhccCHHH Confidence 9999999981 233488999999999999999987643 333433322211 111 Q ss_pred -----------------cccccccCCCCC-CC Q lcl|NC_001629. 266 -----------------SKSSSRDSEPLG-ND 279 (279) Q Consensus 266 -----------------s~~~~~~~~~~~-~~ 279 (279) -.-.--+-+|+. .| T Consensus 362 r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~ 393 (437) T protein:vir:10 362 RAAFYSTMTQNGLMTRDECRAKENLPPMGGNA 393 (437) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCc Confidence 001111223332 12 No 24 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=98.57 E-value=2.8e-09 Score=67.46 Aligned_cols=254 Identities=15% Similarity=0.131 Sum_probs=132.7 Q ss_pred CcccccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhccceeeeeehhhh----hhh- Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF-WALQGQEVYRVWYGGF----KYY- 74 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~y- 74 (279) ..=+.+.|+.+.+ .+|-.+|| . .=-|-..+-.+-++.+.. +.+.|.....+..++. +.+ T Consensus 3 ~lp~~~~~~~~~~-------~~~l~~lL-----~---~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~ 67 (348) T protein:vir:93 3 SLPLKMYEDYKVV-------NTEVSDLL-----T---VSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFL 67 (348) T ss_pred ccceEeEecCcCc-------ccHHHHHH-----H---hCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEE Confidence 1123444444322 23322222 2 124555566666666663 3555653222222111 222 Q ss_pred --hhhcccchh---hh---hhcCCCccEEEEeecceeeeec-----ccccccc-chhhHHHHHHHHHhhhhhhc-cCceE Q lcl|NC_001629. 75 --AQRVNADQF---NI---LVREPNRRQVTIRTSDYEMLLN-----PFYGANP-QRFGVMFGMASNGIGRRLDS-QAQIK 139 (279) Q Consensus 75 --~~~v~~d~f---N~---~v~~~~~~~vtlP~SDV~iieN-----Pf~~V~~-ee~t~MLd~aLnaI~~KLeq-qgslK 139 (279) |..|.+..- +. -+..++.+.+++|-+||.-|-+ ++++..+ +.+...++.+.++-...+.. ....+ T Consensus 68 l~~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 147 (348) T protein:vir:93 68 LNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDS 147 (348) T ss_pred EcCCceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCCCce Confidence 233332211 11 1356667789999999987743 3344332 12222244443332223333 22245 Q ss_pred EEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc-HHHHHHHHHHHHhhcCCccccccc Q lcl|NC_001629. 140 IYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALSEYGMPRELLYG 218 (279) Q Consensus 140 ifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~-~~die~lkS~LySq~GInekIL~G 218 (279) +.++.+-.. +++-+++.+++.+++.+ +-+|+.+++.|.++++|.....-+. .+-..+.+...+..||||..++-+ T Consensus 148 ~i~~~~~~l-~~e~~~~~~~~~~~~~~---n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~ 223 (348) T protein:vir:93 148 FMLKYGSNV-STEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 223 (348) T ss_pred eEEecCCCC-CHHHHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 556766664 45556777777776653 4578999999999999974322111 222335688899999999999965 Q ss_pred ccc------cceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc--Ccccccc----------------------- Q lcl|NC_001629. 219 QSN------EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK--GGKIESK----------------------- 267 (279) Q Consensus 219 taT------eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~--gg~~~s~----------------------- 267 (279) ..+ |++.++|+..+|.|++++.+.+ +.++.++...+ |-.++-. T Consensus 224 ~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~------l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G 297 (348) T protein:vir:93 224 RSNTNFAKNEELNRFYLQHTLLPIVKQYEEE------FNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSG 297 (348) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHH------HHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCC Confidence 432 7889999999999999997763 33344433222 1111100 Q ss_pred -------cccccCCCCC-CC Q lcl|NC_001629. 268 -------SSSRDSEPLG-ND 279 (279) Q Consensus 268 -------~~~~~~~~~~-~~ 279 (279) -.--.-+|+. -| T Consensus 298 ~~T~NE~R~~~g~~p~~ggD 317 (348) T protein:vir:93 298 YYTINDIREWEDLPPVEGGD 317 (348) T ss_pred CCCHHHHHHHhCCCCCCCcC Confidence 0011122331 11 No 25 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=98.54 E-value=2.3e-09 Score=67.96 Aligned_cols=272 Identities=14% Similarity=0.107 Sum_probs=132.9 Q ss_pred Ccc----cccchhhccceeeeeee----cCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTV----QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (279) |.. --++..|++++=..|.| .|.....--..+.-|+..=-|...+-..-++.+..+ .+.|.-...+..++. T Consensus 43 l~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~ 122 (419) T protein:vir:80 43 LSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD 122 (419) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 000 01122333333223322 010000000112222222234444444444555433 445554322222221 Q ss_pred ----hhhh---hhcccchh--hhhhcCCCccEEEEeecceeeeec----ccccccc-chhhHHHHHHHH--Hhhhhh-hc Q lcl|NC_001629. 72 ----KYYA---QRVNADQF--NILVREPNRRQVTIRTSDYEMLLN----PFYGANP-QRFGVMFGMASN--GIGRRL-DS 134 (279) Q Consensus 72 ----~~y~---~~v~~d~f--N~~v~~~~~~~vtlP~SDV~iieN----Pf~~V~~-ee~t~MLd~aLn--aI~~KL-eq 134 (279) ..|| .+|.+..- +..+-+-. -...+|-.+|..+-+ ++++..+ +....-++.++. .-..++ .+ T Consensus 123 G~~~~L~~i~~~~v~i~~~~~~~~~y~~~-~~~~~~~~~i~h~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 201 (419) T protein:vir:80 123 GVIQGLYPLDNEAVTVMKGPDLKPMYRVA-GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMN 201 (419) T ss_pred CcEEEEEEecCceEEEEECCCceEEEEEc-CccccchhheEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 1222 33332111 11000000 012367777777753 3444433 122222333222 233344 55 Q ss_pred cCceEEEEecCcccc---hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccC-ccccccHHHHHHHHHHHHhhcC Q lcl|NC_001629. 135 QAQIKIYWKTKVSSG---LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQP-DYSGSLQNDANLAIEIALSEYG 210 (279) Q Consensus 135 qgslKifikL~i~~~---~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~-DYSts~~~die~lkS~LySq~G 210 (279) .+..++.++++.+.. .++-.++.++.++++..-+.+-+++.+++.|.++++|.- +-+....+-.++.+.+.+..|| T Consensus 202 g~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fg 281 (419) T protein:vir:80 202 GTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYK 281 (419) T ss_pred CCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhC Confidence 677999999887643 455666666666666655555688999999999999973 2223334556688899999999 Q ss_pred Ccccccc----cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-ccccc--------------- Q lcl|NC_001629. 211 MPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IESKS--------------- 268 (279) Q Consensus 211 InekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~s~~--------------- 268 (279) ||..++- ++++ |++.++|+..+|.|+++++|. |++++.++...++|. ++-.- T Consensus 282 VPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~------~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~ 355 (419) T protein:vir:80 282 IPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQ------AKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAY 355 (419) T ss_pred CCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH------HHhhhccCccccCCeEEEEechhhhccCHHHHHHHH Confidence 9999983 3332 788999999999999999876 444455554443332 11100 Q ss_pred ---------------ccccCCCC-CCC Q lcl|NC_001629. 269 ---------------SSRDSEPL-GND 279 (279) Q Consensus 269 ---------------~~~~~~~~-~~~ 279 (279) ...+-+|+ |-| T Consensus 356 ~~~~~~G~~T~NE~R~~~g~~p~~gGD 382 (419) T protein:vir:80 356 AVGRQWGWLSINDIRRLENMPPVKGGD 382 (419) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 00111222 111 No 26 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=98.53 E-value=2e-09 Score=68.22 Aligned_cols=266 Identities=12% Similarity=0.131 Sum_probs=145.0 Q ss_pred Cc----ccccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MS----LFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |. .--++..|++++=..|.+.+.+.+.|+-+ -|...+-..-++.+..+ .+.|.-...+..++. T Consensus 42 l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~L~~~--------PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~ 113 (382) T protein:vir:48 42 LRNSDLFSIINQLSNDLATVKLITSRKKLQGIVDN--------PSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDM 113 (382) T ss_pred hccHHHHHHHHHHHHhhccCceeeecchhhhhhhh--------cCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEE Confidence 11 01244567777777788877776654322 35555555555555533 455654333322211 Q ss_pred hhh---hhhcccchh---hh-----hhc-CCCccEEEEeecceeeeecccc-----cccc-chhhHHHHHHHHH--hhhh Q lcl|NC_001629. 72 KYY---AQRVNADQF---NI-----LVR-EPNRRQVTIRTSDYEMLLNPFY-----GANP-QRFGVMFGMASNG--IGRR 131 (279) Q Consensus 72 ~~y---~~~v~~d~f---N~-----~v~-~~~~~~vtlP~SDV~iieNPf~-----~V~~-ee~t~MLd~aLna--I~~K 131 (279) .+| |.+|.+... +. .+. .....++++|.+||.-|-.|-. +..+ +.....++.+.++ ...+ T Consensus 114 ~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~ 193 (382) T protein:vir:48 114 KWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTIN 193 (382) T ss_pred EEEEEcCceeEEEEcCCCCeEEEEEEecCccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 223 344433211 11 111 1223578899999987754432 2221 2222323333333 3333 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLAIEIALSEY 209 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~lkS~LySq~ 209 (279) . .+.+..++.++++-....++.+ +. .+++.+.+++-+|+.+++.|.++++|...-. ....+-.++.+.+.+..| T Consensus 194 ~~~ng~~p~~il~~~~~~~~e~~~-~~---~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~af 269 (382) T protein:vir:48 194 SLKNALNANGILKIKGGGLLDFKT-KL---SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVY 269 (382) T ss_pred HHhccCCCceEEEeCCCCChHHHH-HH---HHHHHhhccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHh Confidence 3 5566788999998775544433 32 2334455666799999999999999974322 222344567778999999 Q ss_pred CCccccc----ccccccceehhhhhhhHHHHHHHhcccccc---h-------------hhhhhhhheecccCcccccccc Q lcl|NC_001629. 210 GMPRELL----YGQSNEVTIIAFAIQKVLPLLKQHDKNIVF---N-------------QENFVAYISTTAKGGKIESKSS 269 (279) Q Consensus 210 GInekIL----~GtaTeeqkiAyy~stV~PLLkQyek~lvf---~-------------~E~fv~y~ttta~gg~~~s~~~ 269 (279) |||..+| ++++++++..+|+..+|.|++++++.++-. . .+.+..-+.+=.++|.+..- . T Consensus 270 gVp~~~lg~~~~~~~~~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~-e 348 (382) T protein:vir:48 270 GIPDNVVGGQGDQQSSLEMSSDLYSKAVSRYLRPFLSELSQKLSCDVDADIFPAVDPTGSNYISRINSLVKTGTLAQN-Q 348 (382) T ss_pred CCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhccchhHHHHHHHHHhhcCccCHH-H Confidence 9999998 345567888999999999999998765422 1 11122222333345533211 1 Q ss_pred cc----------cCCCCCCC Q lcl|NC_001629. 270 SR----------DSEPLGND 279 (279) Q Consensus 270 ~~----------~~~~~~~~ 279 (279) -| +..|-|.+ T Consensus 349 ~r~~l~~~g~~~~~~~~~~~ 368 (382) T protein:vir:48 349 GLYILQQAEILPKELPNGEN 368 (382) T ss_pred HHHHHhhCCCCCcchhhhhc Confidence 11 11111111 No 27 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=98.50 E-value=3.4e-09 Score=67.05 Aligned_cols=269 Identities=15% Similarity=0.135 Sum_probs=137.3 Q ss_pred Cc---cc-ccchhhccceeeeeeecC-------cchhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhccceeeeeeh Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQD-------PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF-WALQGQEVYRVWY 68 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 68 (279) |. +| -.+..|++++=..+.|-. +..|- .+.=|+..=-|...+-..-++.+.. +.+.|.....+.. T Consensus 43 l~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~---~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r 119 (419) T protein:vir:14 43 LALTVLQNCVTLLAESIAQLPIELYERSGEDRKPATDH---PLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDR 119 (419) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCcccccccc---HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 00 00 122334444433333210 01111 1111222224444444444455433 3566765444443 Q ss_pred hhh----hhhh---hhcccch--hhhhhcCCCccEEEEeecceeeeec----ccccccc-chhhHHHHHHHHHh--hhhh Q lcl|NC_001629. 69 GGF----KYYA---QRVNADQ--FNILVREPNRRQVTIRTSDYEMLLN----PFYGANP-QRFGVMFGMASNGI--GRRL 132 (279) Q Consensus 69 ~~~----~~y~---~~v~~d~--fN~~v~~~~~~~vtlP~SDV~iieN----Pf~~V~~-ee~t~MLd~aLnaI--~~KL 132 (279) ++. ..|| .+|.+.. -...+-+- .....+|-++|..+-. ++++..+ +....-++.++++- ..+. T Consensus 120 ~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~-~~~~~~~~~~i~h~~~~~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~ 198 (419) T protein:vir:14 120 DSDGVIQGLYPLDNEAVTVMRGSDLKPVYRV-RGSDPMPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKS 198 (419) T ss_pred CCCCcEEEEEEecCceEEEEECCCceEEEEE-ccCcccchhheeEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 321 2332 3443321 11111000 0122356677766643 4444433 22223344444332 2333 Q ss_pred -hccCceEEEEecCcccc---hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCc-cccccHHHHHHHHHHHHh Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSG---LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPD-YSGSLQNDANLAIEIALS 207 (279) Q Consensus 133 -eqqgslKifikL~i~~~---~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~D-YSts~~~die~lkS~LyS 207 (279) .+.+..++.++.+-+.+ .++-+++.+++.+++..-+.+-+|+.+++.|-++++|... -+....+-..+.+...+. T Consensus 199 f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~ 278 (419) T protein:vir:14 199 FMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIAR 278 (419) T ss_pred HhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHH Confidence 55667999999887654 4667777777777776656666889999999999999732 111223334577889999 Q ss_pred hcCCcccccc----cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-ccccc------------ Q lcl|NC_001629. 208 EYGMPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IESKS------------ 268 (279) Q Consensus 208 q~GInekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~s~~------------ 268 (279) .||||..++- ++++ |++.++|+..+|.|+++++|. |++++.++...+.|. ++-.- T Consensus 279 ~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~~L~P~~~~ie~------~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~ 352 (419) T protein:vir:14 279 IYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQ------AKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRY 352 (419) T ss_pred HhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH------HHhhhccCccccCCeEEEEechhhhccCHHHHH Confidence 9999999993 3333 889999999999999999876 444455544433221 11110 Q ss_pred ------------------ccccCCCC-CCC Q lcl|NC_001629. 269 ------------------SSRDSEPL-GND 279 (279) Q Consensus 269 ------------------~~~~~~~~-~~~ 279 (279) .--+-+|+ |-| T Consensus 353 ~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD 382 (419) T protein:vir:14 353 AAYAVGRQWGWLSINDIRRLENMPPVKGGD 382 (419) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 00111222 112 No 28 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=98.48 E-value=5.6e-09 Score=65.83 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=137.7 Q ss_pred Ccccc---------------cchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee Q lcl|NC_001629. 1 MSLFN---------------LSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY 64 (279) Q Consensus 1 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (279) .+.+. ++.-|++++=..+.+-..+ +..=..+.-|...=-|-.-+-..-++.+..+ .+.|.-.. T Consensus 35 ~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 113 (409) T protein:vir:94 35 KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 113 (409) T ss_pred ccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecc-cccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEE Confidence 01111 1123444443444331111 1011112223332345555555555665544 55666543 Q ss_pred eeehhhh----hhh---hhhcccchh---hhh---hcCCCccEEEEeecceeeeecccc-----ccc-cchhhHHHHHHH Q lcl|NC_001629. 65 RVWYGGF----KYY---AQRVNADQF---NIL---VREPNRRQVTIRTSDYEMLLNPFY-----GAN-PQRFGVMFGMAS 125 (279) Q Consensus 65 ~~~~~~~----~~y---~~~v~~d~f---N~~---v~~~~~~~vtlP~SDV~iieNPf~-----~V~-~ee~t~MLd~aL 125 (279) .++.++. ++| |..|.+..- +.+ +.-++.+++++|.+||.-|-+|.. +.. ...+...++.+. T Consensus 114 ~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~ 193 (409) T protein:vir:94 114 LIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN 193 (409) T ss_pred EEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHH Confidence 4443221 333 455544321 111 245567789999999999965432 221 112223344444 Q ss_pred HHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcc-ccccHHHHHHHHH Q lcl|NC_001629. 126 NGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDY-SGSLQNDANLAIE 203 (279) Q Consensus 126 naI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DY-Sts~~~die~lkS 203 (279) .+-...+...+. ..+.++.+-. .+++-+++++++++++.+ +-+|+.+++.|.++++|.-.- +....+-..+.+. T Consensus 194 ~~~~~~~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 269 (409) T protein:vir:94 194 AVRTFNLTEMQKPDSFMLKYGSN-VGKEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRE 269 (409) T ss_pred HHHHHHHHhcCCCCeeEEecCCC-CCHHHHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 433333433222 3455677666 455666778888776553 458999999999999996321 1112233345668 Q ss_pred HHHhhcCCccccccccc--c----cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhhe------------- Q lcl|NC_001629. 204 IALSEYGMPRELLYGQS--N----EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYIS------------- 256 (279) Q Consensus 204 ~LySq~GInekIL~Gta--T----eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~t------------- 256 (279) +.+..||||..++.+.. | |++.++|+..+|.|++++.|.+|-. ..| .+.+|-. T Consensus 270 ~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~ 349 (409) T protein:vir:94 270 RVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAE 349 (409) T ss_pred HHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHH Confidence 89999999999996543 2 7889999999999999998764332 111 1111110 Q ss_pred ---ecccCcc--cccccccccCCCCC-CC Q lcl|NC_001629. 257 ---TTAKGGK--IESKSSSRDSEPLG-ND 279 (279) Q Consensus 257 ---tta~gg~--~~s~~~~~~~~~~~-~~ 279 (279) +=-..|- +|-.-.--+-+|+. -| T Consensus 350 ~~~~~~~~G~~T~NE~R~~~g~~p~~ggD 378 (409) T protein:vir:94 350 VYFKAVRSGYYTINDIREWEDLPPVEGGD 378 (409) T ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 0000111 11111111222321 11 No 29 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=98.47 E-value=1.3e-08 Score=63.84 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=135.7 Q ss_pred Ccc----cccchhhccceeeeeeec---C----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeeh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ---D----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWY 68 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (279) |.. --.+.-|.+|+=..|.+- + +.++--+-.||- -=-|...+-..-++.+... .+.|.-...+.. T Consensus 47 l~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~lL~---~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 123 (429) T protein:vir:10 47 LKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLR---LRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF 123 (429) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHHH---hhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 000 011233444443333331 1 112211222221 1233333333444444443 334543333322 Q ss_pred hh----hhhhh---hhcccch--hh--------hhhcCCCccEEEEeecceeeeecc-----cccccc-chhhHHHHHHH Q lcl|NC_001629. 69 GG----FKYYA---QRVNADQ--FN--------ILVREPNRRQVTIRTSDYEMLLNP-----FYGANP-QRFGVMFGMAS 125 (279) Q Consensus 69 ~~----~~~y~---~~v~~d~--fN--------~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~-ee~t~MLd~aL 125 (279) .+ .+.|| .+|.+.. +. .-+-..+.+++++|-+||.-|-.+ +++..+ +.+...++.++ T Consensus 124 ~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~ 203 (429) T protein:vir:10 124 DRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSA 203 (429) T ss_pred CCCCcEEEEEEEcCceeEEEEcCcccccccceEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHH Confidence 11 12222 2232211 00 012223455788999999877432 333222 23333344443 Q ss_pred HH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHH Q lcl|NC_001629. 126 NG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLA 201 (279) Q Consensus 126 na--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~l 201 (279) .+ ...+. .+.+..++.++++-.. +++-+++++++++.+..-+++-+|+.+++.|-++++|.-.-..+ ..+-.++. T Consensus 204 ~~~~~~~~~~~ng~~~~~il~~~~~l-~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 282 (429) T protein:vir:10 204 SADKFINNFYKQGLQVKGLVQYVGDL-NEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELT 282 (429) T ss_pred HHHHHHHHHHhccCCccEEEEcCCCC-CHHHHHHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHH Confidence 33 33344 5666789999998764 45556788888877776566678999999999999985221111 12223456 Q ss_pred HHHHHhhcCCccccc----ccccc--cceehhhhhhhHHHHHHHhccccc---c-hhh----hhhhhhee---------- Q lcl|NC_001629. 202 IEIALSEYGMPRELL----YGQSN--EVTIIAFAIQKVLPLLKQHDKNIV---F-NQE----NFVAYIST---------- 257 (279) Q Consensus 202 kS~LySq~GInekIL----~GtaT--eeqkiAyy~stV~PLLkQyek~lv---f-~~E----~fv~y~tt---------- 257 (279) +.+.+..||||..+| .+++. +++.++|+..+|.|++++++.++- | ..| .+++|-++ T Consensus 283 ~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~ 362 (429) T protein:vir:10 283 IRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR 362 (429) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH Confidence 888999999999999 33332 789999999999999999877542 1 111 11121111 Q ss_pred ------cccCccc--ccccccccCCCCC-CC Q lcl|NC_001629. 258 ------TAKGGKI--ESKSSSRDSEPLG-ND 279 (279) Q Consensus 258 ------ta~gg~~--~s~~~~~~~~~~~-~~ 279 (279) =...|-+ |-.-.--+-+|+. -| T Consensus 363 ~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 393 (429) T protein:vir:10 363 YEAYRTGIQGGFLKPNEARSKEDLPPEAGGD 393 (429) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 0011111 1111111122331 12 No 30 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.45 E-value=1e-08 Score=64.35 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=142.6 Q ss_pred Ccc----cccchhhccceeeeeeec--C-----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeeh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ--D-----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWY 68 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (279) +.. --+++.|.+|+=..|.|- + +.++--+-.|| ..=-|...+-..-++.+..+ .+.|.-...+.. T Consensus 50 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 126 (432) T protein:vir:10 50 LKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLL---RLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF 126 (432) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHH---HhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 000 012345565554444431 1 11221122222 22245555555556666655 345654444433 Q ss_pred hhh----hhh---hhhcccch--h----h----hhhcCCCccEEEEeecceeeeec-----ccccccc-chhhHHHHHHH Q lcl|NC_001629. 69 GGF----KYY---AQRVNADQ--F----N----ILVREPNRRQVTIRTSDYEMLLN-----PFYGANP-QRFGVMFGMAS 125 (279) Q Consensus 69 ~~~----~~y---~~~v~~d~--f----N----~~v~~~~~~~vtlP~SDV~iieN-----Pf~~V~~-ee~t~MLd~aL 125 (279) ++. +.| |..|.+.+ . . .-+-..+.+++++|-+||.-|-. |+++..+ +.+...++.++ T Consensus 127 ~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~ 206 (432) T protein:vir:10 127 DRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSA 206 (432) T ss_pred CCCCcEEEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHH Confidence 221 122 23333211 0 0 01122344578899999987743 2344332 23333344444 Q ss_pred HH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHH Q lcl|NC_001629. 126 NG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLA 201 (279) Q Consensus 126 na--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~l 201 (279) .+ ...+. .+.+..++.++++-... ++-+++++++++++-.-+++-+|+.+++.|-++++|.-.-. ....+-.++. T Consensus 207 ~~~~~~~~~~~ng~~p~gil~~~~~l~-~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 285 (432) T protein:vir:10 207 SADKFINNFYKQGLQVKGLVQYVGDLN-EDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELT 285 (432) T ss_pred HHHHHHHHHHhccCCccEEEEcCCCCC-HHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHH Confidence 33 23334 66667888999987754 44567888888877766666789999999999999863211 1112334455 Q ss_pred HHHHHhhcCCccccc----ccccc--cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhh------------ Q lcl|NC_001629. 202 IEIALSEYGMPRELL----YGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYI------------ 255 (279) Q Consensus 202 kS~LySq~GInekIL----~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~------------ 255 (279) +.+.+..||||..++ .|+++ |++.++|+..+|.|++++.|.++-+ ..| .+++|- T Consensus 286 ~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~ 365 (432) T protein:vir:10 286 IRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR 365 (432) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH Confidence 788999999999999 34433 7899999999999999998764431 111 112221 Q ss_pred ----eecccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 256 ----STTAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 256 ----ttta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) .+=-++|-+ +...-| +-+|+ |-| T Consensus 366 ~~~~~~~~~~G~~-t~NE~R~~~g~~pi~ggD 396 (432) T protein:vir:10 366 YEAYRTGIQGGFL-KPNEARSKEDLPPEAGGD 396 (432) T ss_pred HHHHHHHHhCCCc-CHHHHHHHhCCCCCCCCC Confidence 111111211 111111 12232 112 No 31 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.45 E-value=1e-08 Score=64.35 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=142.6 Q ss_pred Ccc----cccchhhccceeeeeeec--C-----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeeh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ--D-----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWY 68 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (279) +.. --+++.|.+|+=..|.|- + +.++--+-.|| ..=-|...+-..-++.+..+ .+.|.-...+.. T Consensus 50 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 126 (432) T protein:vir:10 50 LKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLL---RLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF 126 (432) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHH---HhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 000 012345565554444431 1 11221122222 22245555555556666655 345654444433 Q ss_pred hhh----hhh---hhhcccch--h----h----hhhcCCCccEEEEeecceeeeec-----ccccccc-chhhHHHHHHH Q lcl|NC_001629. 69 GGF----KYY---AQRVNADQ--F----N----ILVREPNRRQVTIRTSDYEMLLN-----PFYGANP-QRFGVMFGMAS 125 (279) Q Consensus 69 ~~~----~~y---~~~v~~d~--f----N----~~v~~~~~~~vtlP~SDV~iieN-----Pf~~V~~-ee~t~MLd~aL 125 (279) ++. +.| |..|.+.+ . . .-+-..+.+++++|-+||.-|-. |+++..+ +.+...++.++ T Consensus 127 ~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~ 206 (432) T protein:vir:10 127 DRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSA 206 (432) T ss_pred CCCCcEEEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHH Confidence 221 122 23333211 0 0 01122344578899999987743 2344332 23333344444 Q ss_pred HH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHH Q lcl|NC_001629. 126 NG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLA 201 (279) Q Consensus 126 na--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~l 201 (279) .+ ...+. .+.+..++.++++-... ++-+++++++++++-.-+++-+|+.+++.|-++++|.-.-. ....+-.++. T Consensus 207 ~~~~~~~~~~~ng~~p~gil~~~~~l~-~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 285 (432) T protein:vir:10 207 SADKFINNFYKQGLQVKGLVQYVGDLN-EDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELT 285 (432) T ss_pred HHHHHHHHHHhccCCccEEEEcCCCCC-HHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHH Confidence 33 23334 66667888999987754 44567888888877766666789999999999999863211 1112334455 Q ss_pred HHHHHhhcCCccccc----ccccc--cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhh------------ Q lcl|NC_001629. 202 IEIALSEYGMPRELL----YGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYI------------ 255 (279) Q Consensus 202 kS~LySq~GInekIL----~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~------------ 255 (279) +.+.+..||||..++ .|+++ |++.++|+..+|.|++++.|.++-+ ..| .+++|- T Consensus 286 ~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~ 365 (432) T protein:vir:10 286 IRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR 365 (432) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH Confidence 788999999999999 34433 7899999999999999998764431 111 112221 Q ss_pred ----eecccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 256 ----STTAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 256 ----ttta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) .+=-++|-+ +...-| +-+|+ |-| T Consensus 366 ~~~~~~~~~~G~~-t~NE~R~~~g~~pi~ggD 396 (432) T protein:vir:10 366 YEAYRTGIQGGFL-KPNEARSKEDLPPEAGGD 396 (432) T ss_pred HHHHHHHHhCCCc-CHHHHHHHhCCCCCCCCC Confidence 111111211 111111 12232 112 No 32 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.45 E-value=1e-08 Score=64.35 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=142.6 Q ss_pred Ccc----cccchhhccceeeeeeec--C-----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeeh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ--D-----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWY 68 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (279) +.. --+++.|.+|+=..|.|- + +.++--+-.|| ..=-|...+-..-++.+..+ .+.|.-...+.. T Consensus 50 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 126 (432) T protein:vir:10 50 LKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLL---RLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF 126 (432) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHH---HhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 000 012345565554444431 1 11221122222 22245555555556666655 345654444433 Q ss_pred hhh----hhh---hhhcccch--h----h----hhhcCCCccEEEEeecceeeeec-----ccccccc-chhhHHHHHHH Q lcl|NC_001629. 69 GGF----KYY---AQRVNADQ--F----N----ILVREPNRRQVTIRTSDYEMLLN-----PFYGANP-QRFGVMFGMAS 125 (279) Q Consensus 69 ~~~----~~y---~~~v~~d~--f----N----~~v~~~~~~~vtlP~SDV~iieN-----Pf~~V~~-ee~t~MLd~aL 125 (279) ++. +.| |..|.+.+ . . .-+-..+.+++++|-+||.-|-. |+++..+ +.+...++.++ T Consensus 127 ~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~ 206 (432) T protein:vir:10 127 DRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSA 206 (432) T ss_pred CCCCcEEEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHH Confidence 221 122 23333211 0 0 01122344578899999987743 2344332 23333344444 Q ss_pred HH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHH Q lcl|NC_001629. 126 NG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLA 201 (279) Q Consensus 126 na--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~l 201 (279) .+ ...+. .+.+..++.++++-... ++-+++++++++++-.-+++-+|+.+++.|-++++|.-.-. ....+-.++. T Consensus 207 ~~~~~~~~~~~ng~~p~gil~~~~~l~-~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 285 (432) T protein:vir:10 207 SADKFINNFYKQGLQVKGLVQYVGDLN-EDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELT 285 (432) T ss_pred HHHHHHHHHHhccCCccEEEEcCCCCC-HHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHH Confidence 33 23334 66667888999987754 44567888888877766666789999999999999863211 1112334455 Q ss_pred HHHHHhhcCCccccc----ccccc--cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhh------------ Q lcl|NC_001629. 202 IEIALSEYGMPRELL----YGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYI------------ 255 (279) Q Consensus 202 kS~LySq~GInekIL----~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~------------ 255 (279) +.+.+..||||..++ .|+++ |++.++|+..+|.|++++.|.++-+ ..| .+++|- T Consensus 286 ~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~ 365 (432) T protein:vir:10 286 IRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR 365 (432) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH Confidence 788999999999999 34433 7899999999999999998764431 111 112221 Q ss_pred ----eecccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 256 ----STTAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 256 ----ttta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) .+=-++|-+ +...-| +-+|+ |-| T Consensus 366 ~~~~~~~~~~G~~-t~NE~R~~~g~~pi~ggD 396 (432) T protein:vir:10 366 YEAYRTGIQGGFL-KPNEARSKEDLPPEAGGD 396 (432) T ss_pred HHHHHHHHhCCCc-CHHHHHHHhCCCCCCCCC Confidence 111111211 111111 12232 112 No 33 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=98.43 E-value=1.5e-08 Score=63.52 Aligned_cols=272 Identities=11% Similarity=0.073 Sum_probs=139.5 Q ss_pred Ccc----cccchhhccceeeeeeec---CcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhhh- Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ---DPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGGF- 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 71 (279) |.. --.+..|.+|+=..|.|- |.+....-..+.-|+..--|...+-..-++.+..+. +.|.-...+..++. T Consensus 40 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G 119 (409) T protein:vir:10 40 LKQATVFGCIRILSDNISKLPIKIYQKKDGIKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNG 119 (409) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEEecCCeeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC Confidence 100 112344555554444331 111100001122233333455555555556666543 45653322221111 Q ss_pred ---hhh---hhhcccchhh--h---------hhcCCCccEEEEeecceeeeecc----cccccc-chhhHHHHHHH--HH Q lcl|NC_001629. 72 ---KYY---AQRVNADQFN--I---------LVREPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGMAS--NG 127 (279) Q Consensus 72 ---~~y---~~~v~~d~fN--~---------~v~~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~aL--na 127 (279) ++| |.+|.+.+-+ . -+..++.+.+++|-+||..|-+| +++..+ +.....++.+. .. T Consensus 120 ~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~ 199 (409) T protein:vir:10 120 EIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLYTDDLGQRHKFMSDEILHFKGLTADGLAGLSVIELLNHLIENGKSSET 199 (409) T ss_pred cEEEEEEEcCCceEEEEcCCccccccceEEEEEEeCCceeEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHH Confidence 111 2233321111 0 01234455678999999887543 333332 12222233322 22 Q ss_pred hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHH Q lcl|NC_001629. 128 IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIA 205 (279) Q Consensus 128 I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~L 205 (279) ...++ .+.+..++.++++-.. .++-+++.+++.+++..-+++-+|+.+++.|.++++|.-.-.. ...+-.++.+.+. T Consensus 200 ~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 278 (409) T protein:vir:10 200 YLNNFFKNGLQVKGLVQYAGDL-NPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQI 278 (409) T ss_pred HHHHHHhccCCCcEEEEcCCCC-CHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHH Confidence 33344 5566688999988653 4556677888888777666666789999999999999743211 1233455778889 Q ss_pred HhhcCCcccccc------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc------------------- Q lcl|NC_001629. 206 LSEYGMPRELLY------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK------------------- 260 (279) Q Consensus 206 ySq~GInekIL~------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~------------------- 260 (279) +..||||..+|- ++..+++.++|+..+|.|++++.|.+|- ++.++...+ T Consensus 279 a~~fgVPp~~lg~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln------~kL~~~~~~~~~~~~~fd~~~ll~~d~~ 352 (409) T protein:vir:10 279 ASVFGVKMHQLNDLDRATHSNITEQNREFYIDTLQSILNMYELEIN------YKLFLISEIKNGFYSKFNVDTILRADIK 352 (409) T ss_pred HHHhCCCHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH------HhhcCchhccCCcEEEEechhhhccCHH Confidence 999999999993 2333889999999999999999876443 222222111 Q ss_pred -----------Cccc--ccccccccCCCC-CCC Q lcl|NC_001629. 261 -----------GGKI--ESKSSSRDSEPL-GND 279 (279) Q Consensus 261 -----------gg~~--~s~~~~~~~~~~-~~~ 279 (279) .|-+ |-.-.-.+-+|+ |-| T Consensus 353 ~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD 385 (409) T protein:vir:10 353 TRYESYKEAIQNGFKTPNEIRELEEDEPLEGGD 385 (409) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 1111 000001112232 112 No 34 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=98.42 E-value=7.4e-09 Score=65.17 Aligned_cols=265 Identities=12% Similarity=0.082 Sum_probs=129.0 Q ss_pred Ccccccchhhccceeee----ee-------------ecCcchhHHHHHHHHHHHHh------------------------ Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFST----FT-------------VQDPTTDLLLGKLLGLVSYF------------------------ 39 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~------------------------ 39 (279) |++|+- |....+|.+. +. .+-|+---.+-.+-.-|+-. T Consensus 1 m~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~~~~~~~~~~lL~~~ 79 (406) T protein:vir:97 1 MSFFQP-LGTSKVSYDDYISSVLAGDVSQKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGDIIHDEDINYLLNVK 79 (406) T ss_pred Cccccc-cCCCCCCcchHHHHHhcCCCCcccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCccccccchHHHHhhcc Confidence 766653 3322223221 00 01122111122222222211 Q ss_pred hcccchhhhhhhhhhhh-hhccceeeeeehh---h--hhhh---hhhcccch--hhhh---hc-CCCccEEEEeecceee Q lcl|NC_001629. 40 DNVDYSEASKLEDLFFW-ALQGQEVYRVWYG---G--FKYY---AQRVNADQ--FNIL---VR-EPNRRQVTIRTSDYEM 104 (279) Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~--~~~y---~~~v~~d~--fN~~---v~-~~~~~~vtlP~SDV~i 104 (279) -|-..+-..-++.+..+ .|.|.-...+..+ | .++| |.+|.+.. -+.+ |. ....+++++|-+||.- T Consensus 80 PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~evih 159 (406) T protein:vir:97 80 STSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTAKQVKCFAHDVIH 159 (406) T ss_pred CCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCceEEEEccccEEE Confidence 12222222223333333 3455544333322 2 2344 34444321 1111 11 2345678899999987 Q ss_pred eec----ccccccc-chhhHHHH--HHHHHhhhhhhccCceE-EEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeee Q lcl|NC_001629. 105 LLN----PFYGANP-QRFGVMFG--MASNGIGRRLDSQAQIK-IYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSV 176 (279) Q Consensus 105 ieN----Pf~~V~~-ee~t~MLd--~aLnaI~~KLeqqgslK-ifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtY 176 (279) |-. ++++..+ +.+..-++ .+......+.-.+|.-. +.+..+-. -+++-+++++++.+++..- ++-+++.+ T Consensus 160 ~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~g-~n~g~~~v 237 (406) T protein:vir:97 160 WKFFSHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQ-LSGDARQRARQEFEKMREG-SVGGSPLV 237 (406) T ss_pred ecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCC-CCHHHHHHHHHHHHHHhcc-cccCceee Confidence 742 2222221 11112222 23333334443344433 33444443 4566678888888877653 34578999 Q ss_pred ccCCceeEEccCccccccHHHHHHH------HHHHHhhcCCccccc----ccccccceehhhhhhhHHHHHHHhcccccc Q lcl|NC_001629. 177 IGSDDDIKQIQPDYSGSLQNDANLA------IEIALSEYGMPRELL----YGQSNEVTIIAFAIQKVLPLLKQHDKNIVF 246 (279) Q Consensus 177 id~geei~QLq~DYSts~~~die~l------kS~LySq~GInekIL----~GtaTeeqkiAyy~stV~PLLkQyek~lvf 246 (279) ++.|.++++|. .+.+|+++| +...+..||||..+| +++.+++|.++|+..+|.|++++.|.+| T Consensus 238 l~~g~~~~~l~-----~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~l-- 310 (406) T protein:vir:97 238 FDSTMEYTPLE-----IDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLMEDYVTNDLPFYFDAITSEL-- 310 (406) T ss_pred cCCCceEEEcc-----CCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-- Confidence 99999999995 345677666 556677999999999 4556689999999999999999987644 Q ss_pred hhhhhhhhheecccCc-ccc-----------------------cccc---cccCCCCCC---C Q lcl|NC_001629. 247 NQENFVAYISTTAKGG-KIE-----------------------SKSS---SRDSEPLGN---D 279 (279) Q Consensus 247 ~~E~fv~y~ttta~gg-~~~-----------------------s~~~---~~~~~~~~~---~ 279 (279) .++.++..-+.| .++ +.-. --+-+|+.. | T Consensus 311 ----~~kll~~~~~~~~~i~fd~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD 369 (406) T protein:vir:97 311 ----GLKTLNDKDRRLYHIEFDTRSVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMD 369 (406) T ss_pred ----hhhhcChhhccceeEEEecCccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC Confidence 222222211111 000 0000 111223211 1 No 35 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=98.42 E-value=1.6e-08 Score=63.37 Aligned_cols=272 Identities=12% Similarity=0.029 Sum_probs=142.2 Q ss_pred Cc----ccccchhhccceeeeeeec---C----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccceeeeeeh Q lcl|NC_001629. 1 MS----LFNLSRRAEDVSFSTFTVQ---D----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQEVYRVWY 68 (279) Q Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 68 (279) |. .--++..|++|+=..|.+. | ...+-.+-+| .. =-|..-+-..-++.+..+.+ .|.-...+.. T Consensus 70 ~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L---~~-~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r 145 (466) T protein:vir:81 70 QANGPVFACMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQI---LE-TPWKGGTTQDMLSRMIQDADLAGNSYWTIVD 145 (466) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHH---hh-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEEe Confidence 00 0112233444433333332 1 1111111112 11 24555555555666665544 4554333333 Q ss_pred hhh------------hhhh---hhcccch-----------hhhhhcCCCccEEEEeecceeeee------ccccccccc- Q lcl|NC_001629. 69 GGF------------KYYA---QRVNADQ-----------FNILVREPNRRQVTIRTSDYEMLL------NPFYGANPQ- 115 (279) Q Consensus 69 ~~~------------~~y~---~~v~~d~-----------fN~~v~~~~~~~vtlP~SDV~iie------NPf~~V~~e- 115 (279) ++. ++|| .+|.+.. |+.--+++...++++|-+||.-|- +++++..+= T Consensus 146 ~~~g~l~~~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~ 225 (466) T protein:vir:81 146 GEFVRMRPDWVDVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLT 225 (466) T ss_pred cCccccccccCcceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHH Confidence 321 2222 2222211 111112233456889999998763 234444332 Q ss_pred hhhHHHHHH--HHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcc-c Q lcl|NC_001629. 116 RFGVMFGMA--SNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDY-S 191 (279) Q Consensus 116 e~t~MLd~a--LnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DY-S 191 (279) ....-|+.+ ......++ .+.+..++.+++|-.. +++-+++.+++++++..-+++-+++.+++.|-++++|.-.- + T Consensus 226 ~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d 304 (466) T protein:vir:81 226 PILREIRADQAMSKHQAKFFDNGATVNLVIKHNPMA-DPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQE 304 (466) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC-CHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhH Confidence 222223333 33344444 5566788889998774 45567778887777765555667899999999999996321 1 Q ss_pred cccHHHHHHHHHHHHhhcCCccccc-----ccccc----cceehhhhhhhHHHHHHHhcccccc---h-hh---hhhhh- Q lcl|NC_001629. 192 GSLQNDANLAIEIALSEYGMPRELL-----YGQSN----EVTIIAFAIQKVLPLLKQHDKNIVF---N-QE---NFVAY- 254 (279) Q Consensus 192 ts~~~die~lkS~LySq~GInekIL-----~GtaT----eeqkiAyy~stV~PLLkQyek~lvf---~-~E---~fv~y- 254 (279) ....+-.++.+++.+..||||..++ .+++| |++.++|+..+|.|++++.|.+|-. . .| .+.+| T Consensus 305 ~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~ 384 (466) T protein:vir:81 305 IDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDAD 384 (466) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEec Confidence 1112334567788999999999888 24455 7889999999999999998775432 1 11 00111 Q ss_pred ----------------------heecccCcccccccccccCCCCCCC Q lcl|NC_001629. 255 ----------------------ISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 255 ----------------------~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) +++.-..| + ....-|..++.|.+ T Consensus 385 ~~~llr~d~~~r~~~~~~~~~~~~~~~~~g-~-t~nE~r~~~~~gd~ 429 (466) T protein:vir:81 385 DVPFLREDEKDAADIQKVRAETINTLITAG-Y-EPESVVAAVNSGDL 429 (466) T ss_pred chhhhccCHHHHHHHHHHHHHHHHHHHHcC-C-ChhhccccccCCcc Confidence 11111123 1 22233444444444 No 36 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=98.42 E-value=1.3e-08 Score=63.84 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=121.9 Q ss_pred Ccccccchhhccc------eeeeeeecCcchhH-------HHHHH------------------------HHHHHHhhccc Q lcl|NC_001629. 1 MSLFNLSRRAEDV------SFSTFTVQDPTTDL-------LLGKL------------------------LGLVSYFDNVD 43 (279) Q Consensus 1 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~~~~~ 43 (279) |+||+.-++.... ++..+.+.-+.+-+ .+-.+ .-|+..--|-. T Consensus 1 Mgl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~~~~~~~~lL~~~PN~~ 80 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDDDSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTENQKDWLYWINTKANPN 80 (395) T ss_pred CcchhhhcCCCCccccccccccchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCccccccchHHHHHhhcCCCC Confidence 6666543222111 11111111111100 00111 11111122333 Q ss_pred chhhhhhhhhhhhhhccceeeeeehhhhhhhhhh-------cccchhhhhhcCCCccEEEEeecceeeeec------ccc Q lcl|NC_001629. 44 YSEASKLEDLFFWALQGQEVYRVWYGGFKYYAQR-------VNADQFNILVREPNRRQVTIRTSDYEMLLN------PFY 110 (279) Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-------v~~d~fN~~v~~~~~~~vtlP~SDV~iieN------Pf~ 110 (279) .+-..-++.+....+-.-+.|-++..+...|+.. +.-+.|......+.+.+.++|-+||.-|-. |+. T Consensus 81 ~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~dvih~k~~~~~~~~~~ 160 (395) T protein:vir:96 81 QSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFTQDKKLSGNKFKVSRVQGQTYEKIFTFDQVIYLKNDNSDLMLKV 160 (395) T ss_pred CCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCccccccccccceeeeeeeccceeeeEeccCceEEecccCCcccccc Confidence 3333344555554443333443333222222211 111222221112334467889999987642 222 Q ss_pred ccccchhhHHHHHHHHHh---------hhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHH-hcCCeeeccCC Q lcl|NC_001629. 111 GANPQRFGVMFGMASNGI---------GRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAR-EFNGVSVIGSD 180 (279) Q Consensus 111 ~V~~ee~t~MLd~aLnaI---------~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~-~~~GvtYid~g 180 (279) ....+....++..++... .+-..+.+..++-++.+.....+ +.++.++++.+-.. .-+++.+++.| T Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~l~~g 236 (395) T protein:vir:96 161 ESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPK----SDKDFFKRTIEKIRTESVVGIPVTAN 236 (395) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHH----HHHHHHHHHHHHhhcCCcceEEccCC Confidence 222344445544443321 11123344455555555544433 34444444432221 23456778999 Q ss_pred ceeEEccCccccccHHH---HHH----HHHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----h Q lcl|NC_001629. 181 DDIKQIQPDYSGSLQND---ANL----AIEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----N 247 (279) Q Consensus 181 eei~QLq~DYSts~~~d---ie~----lkS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~ 247 (279) -+++++...-..+..-| +.. .+.+.+..||||..+|-|+++ +++.++|+..+|.|++++.|-+|.+ . T Consensus 237 ~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~ 316 (395) T protein:vir:96 237 TNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDGLEYAIFDK 316 (395) T ss_pred ceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh Confidence 99999876544443333 222 235677789999999988765 6778899999999999998864432 1 Q ss_pred hhhhh-hhhee-----------------cccCccccc--ccccccCCCC----CCC Q lcl|NC_001629. 248 QENFV-AYIST-----------------TAKGGKIES--KSSSRDSEPL----GND 279 (279) Q Consensus 248 ~E~fv-~y~tt-----------------ta~gg~~~s--~~~~~~~~~~----~~~ 279 (279) .|... -+|.. =..+|.+.. .-..-+-+|+ |+. T Consensus 317 ~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~ 372 (395) T protein:vir:96 317 SETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKV 372 (395) T ss_pred hhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCce Confidence 22110 01110 001121110 0001122333 111 No 37 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=98.40 E-value=2.4e-08 Score=62.36 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=133.2 Q ss_pred ceeeeeee--cCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehh--h--hhhh---hhhcccch Q lcl|NC_001629. 13 VSFSTFTV--QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYG--G--FKYY---AQRVNADQ 82 (279) Q Consensus 13 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~--~~~y---~~~v~~d~ 82 (279) |+=..+.+ .++.++--+-.+| .---|..-+-.+-++.+..+ .+.|.-...+..+ | .++| |.+|.+++ T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~ 77 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLL---TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLI 77 (278) T ss_pred CccceeEEEecCcccccHHHHHH---HhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEE Confidence 11111111 1112221112222 12234444444455565544 4456543333333 2 1433 36666553 Q ss_pred hhh------hhcCCCccEEEEeecceeeeecc-----cccccc-chhhHHHHHHHHHhhhhhhc-cCceEEEEecCcccc Q lcl|NC_001629. 83 FNI------LVREPNRRQVTIRTSDYEMLLNP-----FYGANP-QRFGVMFGMASNGIGRRLDS-QAQIKIYWKTKVSSG 149 (279) Q Consensus 83 fN~------~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~-ee~t~MLd~aLnaI~~KLeq-qgslKifikL~i~~~ 149 (279) -+. -+..++.+++++|-+||.-+-+| +++..+ ...-..++.++.+-...+.. .+..++.++.+-... T Consensus 78 ~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 157 (278) T protein:vir:78 78 ENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVG 157 (278) T ss_pred cCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCC Confidence 221 13456667899999999876433 344332 23333344444443333322 223577788887744 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc-HHHHHHHHHHHHhhcCCcccccccc--c----cc Q lcl|NC_001629. 150 LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALSEYGMPRELLYGQ--S----NE 222 (279) Q Consensus 150 ~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~-~~die~lkS~LySq~GInekIL~Gt--a----Te 222 (279) +|-+++.+++++++.+ .-+++.+++.|.++.++...-.... .+-.++.+.+.+..||||..++-+. + -+ T Consensus 158 -~e~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~ 233 (278) T protein:vir:78 158 -KEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNE 233 (278) T ss_pred -HHHHHHHHHHHHHHhc---cCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 4556677777766543 4478999999999999975433222 2223567889999999998888322 1 16 Q ss_pred ceehhhhhhhHHHHHHHhcccccchhhhhhhhheecc--cCcccccccccccCCCC Q lcl|NC_001629. 223 VTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTA--KGGKIESKSSSRDSEPL 276 (279) Q Consensus 223 eqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta--~gg~~~s~~~~~~~~~~ 276 (279) ++..+|+..+|.|++++.+- |++++.++... +|-.+.-..+. | T Consensus 234 ~~~~~~~~~~l~P~~~~i~~------~ln~~L~~~~e~~~g~~~~f~~~~-----l 278 (278) T protein:vir:78 234 ELNRFYLQHTLLPIVKQYEE------EFNRKLLTKTDREKIGILNLTLNL-----I 278 (278) T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhhcCChhHhcCCceEEEeccc-----C Confidence 77889999999999998776 45555555422 12222221111 1 No 38 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=98.40 E-value=6e-09 Score=65.65 Aligned_cols=274 Identities=15% Similarity=0.194 Sum_probs=137.0 Q ss_pred Cc----ccccchhhccceeeeeeec----CcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccce-eeeeehhh Q lcl|NC_001629. 1 MS----LFNLSRRAEDVSFSTFTVQ----DPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQE-VYRVWYGG 70 (279) Q Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 70 (279) |. .--+++.|++++=..|.|- |-.....=..+.=|+..--|...+-..-++.+..+ .|.|.- ++.+|-+| T Consensus 58 l~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g 137 (432) T protein:vir:81 58 MRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDG 137 (432) T ss_pred hccHHHHHHHHHHHHhhhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCC Confidence 00 0123445555554444331 10000000112222233456555555556666654 445554 33444454 Q ss_pred h--h-hh--hhhcccc--hhhhh---hcCCCccEEEEeecceeeee----cccccccc-chhhHHHHHHHHH--hhhhh- Q lcl|NC_001629. 71 F--K-YY--AQRVNAD--QFNIL---VREPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFGMASNG--IGRRL- 132 (279) Q Consensus 71 ~--~-~y--~~~v~~d--~fN~~---v~~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd~aLna--I~~KL- 132 (279) . + |+ |.+|.+. ..+.. +...+.+.+++|-.||.-|- +++++..+ +.....|+.++.+ ...++ T Consensus 138 ~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f 217 (432) T protein:vir:81 138 RIESLQYLANDRLTITTDPKGNTAYRYRRTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAF 217 (432) T ss_pred cEEEEEEEcCCceEEEECCCCcEEEEEEecCceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 1 22 4555543 23322 23456677889999997774 33333221 1222234433332 33333 Q ss_pred hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhhcCC Q lcl|NC_001629. 133 DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSEYGM 211 (279) Q Consensus 133 eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq~GI 211 (279) .+-+...+.++.|-... ++-+ +|+++..+-+.+-+|+.+++.|.++++|...-.. ...+-.++.+.+.+..||| T Consensus 218 ~ng~~~~gil~~~~~l~-~e~~----~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgV 292 (432) T protein:vir:81 218 RNGQLQSVYYQIDRFLT-DDQY----DSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGV 292 (432) T ss_pred hcCCCcceEEecCCCCC-HHHH----HHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCC Confidence 44455778888876543 3333 3343334445566889999999999999643211 1223334677888999999 Q ss_pred cccccc----c-----ccccceehhhhhhhHHHHHHHhcccccc----hhh---hhhhh----------------heecc Q lcl|NC_001629. 212 PRELLY----G-----QSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQE---NFVAY----------------ISTTA 259 (279) Q Consensus 212 nekIL~----G-----taTeeqkiAyy~stV~PLLkQyek~lvf----~~E---~fv~y----------------~ttta 259 (279) |..+|- | +..|++.++|+..+|.|+++++|.+|-. ..| .+++| +++=. T Consensus 293 Pp~~lg~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~ 372 (432) T protein:vir:81 293 PPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred CHHHcCCcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHH Confidence 998882 2 2347889999999999999998774432 111 11111 11111 Q ss_pred cCcc--cccccccccCCCCCCC Q lcl|NC_001629. 260 KGGK--IESKSSSRDSEPLGND 279 (279) Q Consensus 260 ~gg~--~~s~~~~~~~~~~~~~ 279 (279) ++|- +|-.-.-.+-+|++.+ T Consensus 373 ~~G~~t~NE~R~~~glpp~~g~ 394 (432) T protein:vir:81 373 NNGLMTRDEAREIEGLPKLGGN 394 (432) T ss_pred hCCCCCHHHHHHHhCCCCCCCC Confidence 1221 1111112234454322 No 39 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=98.40 E-value=1.1e-08 Score=64.24 Aligned_cols=274 Identities=14% Similarity=0.173 Sum_probs=139.5 Q ss_pred Ccccc---------------cchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee Q lcl|NC_001629. 1 MSLFN---------------LSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY 64 (279) Q Consensus 1 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (279) .+.+. ++.-|++|+=..+.+-..+ +..=..+.-|...=-|...+-..-++.+..+ .+.|.-.. T Consensus 35 ~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 113 (409) T protein:vir:93 35 RSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 113 (409) T ss_pred ccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecc-ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEE Confidence 11111 1223444444444331110 0000112223333345555656656666655 45566544 Q ss_pred eeehhhh----hhh---hhhcccchh---hhh---hcCCCccEEEEeecceeeeecccc-----cccc-chhhHHHHHHH Q lcl|NC_001629. 65 RVWYGGF----KYY---AQRVNADQF---NIL---VREPNRRQVTIRTSDYEMLLNPFY-----GANP-QRFGVMFGMAS 125 (279) Q Consensus 65 ~~~~~~~----~~y---~~~v~~d~f---N~~---v~~~~~~~vtlP~SDV~iieNPf~-----~V~~-ee~t~MLd~aL 125 (279) .+..++. ++| |..|.+..- +.. +..++.+++++|.+||.-|-+|.. +..+ +.+...++.+. T Consensus 114 ~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~ 193 (409) T protein:vir:93 114 LIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN 193 (409) T ss_pred EEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHH Confidence 4443322 333 455554321 111 245566788999999999976532 3222 23333355544 Q ss_pred HHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHH Q lcl|NC_001629. 126 NGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIE 203 (279) Q Consensus 126 naI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS 203 (279) .+-.-.+...+. ..+.++.+-.. +++-++++++++++..+ .-+|+.+++.|.++++|.-.-.. ...+-..+.+. T Consensus 194 ~~~~~~~~~~~~~~~~i~~~~~~l-~~e~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~ 269 (409) T protein:vir:93 194 AVRTFNLTEMQKPDSFMLKYGSNV-GKEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRE 269 (409) T ss_pred HHHHHHHHhcCCCCceEEecCCCC-CHHHHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 433333433333 34556777664 44556777777775443 45899999999999999632111 11222335678 Q ss_pred HHHhhcCCccccccccc--c----cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhhe------------- Q lcl|NC_001629. 204 IALSEYGMPRELLYGQS--N----EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYIS------------- 256 (279) Q Consensus 204 ~LySq~GInekIL~Gta--T----eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~t------------- 256 (279) ..+..||||..+|-+.. | |++.++|+..+|.|++++.|.++-. ..| .+.+|-+ T Consensus 270 ~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~ 349 (409) T protein:vir:93 270 RVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAE 349 (409) T ss_pred HHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHH Confidence 89999999999996533 2 7888999999999999997753322 111 1111111 Q ss_pred ---ecccCcc--cccccccccCCCCC-CC Q lcl|NC_001629. 257 ---TTAKGGK--IESKSSSRDSEPLG-ND 279 (279) Q Consensus 257 ---tta~gg~--~~s~~~~~~~~~~~-~~ 279 (279) +=-..|- +|-.-.--+-+|+. -| T Consensus 350 ~~~~~~~~G~~T~NE~R~~~g~~p~~ggD 378 (409) T protein:vir:93 350 VYFKAVRSGYYTINDIREWEDLPPVEGGD 378 (409) T ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 0001111 11111111223331 12 No 40 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=98.39 E-value=3e-08 Score=61.79 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=122.9 Q ss_pred Ccccccchhhccce------eeee---ee----cCcchhHHHHHHHHHHHH------------------------hhccc Q lcl|NC_001629. 1 MSLFNLSRRAEDVS------FSTF---TV----QDPTTDLLLGKLLGLVSY------------------------FDNVD 43 (279) Q Consensus 1 ~~~~~~~~~~~~~~------~~~~---~~----~~~~~~~~~~~~~~~~~~------------------------~~~~~ 43 (279) |+||+--.+....+ .+.+ +. +.|+---.+-.+-.-|+- =-|-. T Consensus 1 MGlf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~~~~~~~~lL~~~PN~~ 80 (395) T protein:vir:98 1 MGILDFFSFKKSGTLSDDDSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTENQKDWLYWINTKANPN 80 (395) T ss_pred CcchhhhcCCCcccccccccchhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcccccchHHHHHhhcCCCC Confidence 77766433222221 1111 10 111111011111111111 11111 Q ss_pred chhhhhhhhhhhhhhccceeeee-ehhhhhhhh------hhcccchhhhhhcCCCccEEEEeecceeeeecc------cc Q lcl|NC_001629. 44 YSEASKLEDLFFWALQGQEVYRV-WYGGFKYYA------QRVNADQFNILVREPNRRQVTIRTSDYEMLLNP------FY 110 (279) Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~------~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNP------f~ 110 (279) .+-..-++.+..+.+-.-+.|-+ -.++-.|-| .++.-+.|......+..-..++|.+||.-+-.+ +. T Consensus 81 ~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~k~~~~~~~~~~ 160 (395) T protein:vir:98 81 QSASQFWVEVIQKLLVDGETLIFVIPGKGIYVADSFTQDKKISGSQFKVSRVQGQTYEKTFTFDQVIYLKNDNSDLMSKV 160 (395) T ss_pred CCHHHHHHHHHHHHhhcCceEEEEEeCCceecCCcccccccccCcccceeeecCceeeeEecCccEEEecCCCCCccccc Confidence 12222233333333322223321 112211111 011111121111112223578888888776421 11 Q ss_pred ccccchhhHHHHHHHHHh----hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHH-hcCCeeeccCCceeE Q lcl|NC_001629. 111 GANPQRFGVMFGMASNGI----GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAR-EFNGVSVIGSDDDIK 184 (279) Q Consensus 111 ~V~~ee~t~MLd~aLnaI----~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~-~~~GvtYid~geei~ 184 (279) ....+.....+..+++.. ..|. ...++..+.++.+.....++.+++.++.++++.+-.. .-.++.+++.|-+++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~ 240 (395) T protein:vir:98 161 ESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTANTNYE 240 (395) T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCCCceeE Confidence 111223333333333322 1222 2333344445566666667777777777777775432 223467789999999 Q ss_pred EccCccc-cccHHHHHHH------HHHHHhhcCCcccccccccc--cceehhhhhhhHHHHHHHhcccccc----hhhhh Q lcl|NC_001629. 185 QIQPDYS-GSLQNDANLA------IEIALSEYGMPRELLYGQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQENF 251 (279) Q Consensus 185 QLq~DYS-ts~~~die~l------kS~LySq~GInekIL~GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E~f 251 (279) ++...-+ -...+|.+++ +.+.+..||||..+|-|+++ +++.++|+..+|.|+++++|-+|-. ..|.. T Consensus 241 ~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~ 320 (395) T protein:vir:98 241 EYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETL 320 (395) T ss_pred ecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc Confidence 9953322 2234444444 34688889999999999887 7778999999999999998864432 11110 Q ss_pred h-hhh-----------------eecccCccc--ccccccccCCCCCC---C Q lcl|NC_001629. 252 V-AYI-----------------STTAKGGKI--ESKSSSRDSEPLGN---D 279 (279) Q Consensus 252 v-~y~-----------------ttta~gg~~--~s~~~~~~~~~~~~---~ 279 (279) . .+| ++--++|-+ |-.-.-.+-+|+.. | T Consensus 321 ~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD 371 (395) T protein:vir:98 321 QGSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGK 371 (395) T ss_pred CcceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 0 011 010112211 11111112334411 1 No 41 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=98.39 E-value=9.9e-09 Score=64.46 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=132.1 Q ss_pred Cc---cc-ccchhhccceeeeeeec---Cc----chhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee-eee Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQ---DP----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY-RVW 67 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 67 (279) |. +| -++.-|++|+=..|.|. +- ..+-.+-.|+ --.|-..+-..-++.+..+ .+.|.-.. -.| T Consensus 50 l~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~ll----~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~ 125 (457) T protein:vir:62 50 LQVSAVFASVRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFP----NAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) T ss_pred hccHHHHHHHHHHHHhHhhCceEEEEecCCccccccchHHHHhc----cccCCCCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 00 00 12223334432223221 11 0111111111 1123234444444554443 34454321 123 Q ss_pred hhhhh---h--hhhhcccch-------------hhhhhcCCCccEEEEeecceeeeecccc-----ccccc-hhhHHHHH Q lcl|NC_001629. 68 YGGFK---Y--YAQRVNADQ-------------FNILVREPNRRQVTIRTSDYEMLLNPFY-----GANPQ-RFGVMFGM 123 (279) Q Consensus 68 ~~~~~---~--y~~~v~~d~-------------fN~~v~~~~~~~vtlP~SDV~iieNPf~-----~V~~e-e~t~MLd~ 123 (279) -+|-- | -|.+|.+.. |..-....+....++|..||.-|-.|.. +..+- .....++. T Consensus 126 ~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~ 205 (457) T protein:vir:62 126 AGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGL 205 (457) T ss_pred CCCcEEEEEEEcCcceEEEEeccCCccceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHH Confidence 23211 1 144544321 2221111111224567788877755533 22211 11222333 Q ss_pred HH--HHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHH Q lcl|NC_001629. 124 AS--NGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDAN 199 (279) Q Consensus 124 aL--naI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die 199 (279) +. ....+++ .+.+..++.++++-.. ++|-++++++.++++..-+++-+++.+++.|-++++|.-.-.- ...+-.+ T Consensus 206 ~~~~~~~~~~~f~ng~~p~gil~~~~~l-s~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 284 (457) T protein:vir:62 206 ALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) T ss_pred HHHHHHHHHHHHhccCCcceEEEcCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHH Confidence 32 3334444 5566788999999775 4455788888888877666667889999999999999632111 1123334 Q ss_pred HHHHHHHhhcCCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-ccc---- Q lcl|NC_001629. 200 LAIEIALSEYGMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IES---- 266 (279) Q Consensus 200 ~lkS~LySq~GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~s---- 266 (279) +.+++.+..||||..++- |+..|++.++|+..+|.|+++++|.+| +++.++...+.|. ++- T Consensus 285 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~l------n~~L~~~~~~~~~~i~fd~~~ 358 (457) T protein:vir:62 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGF------NRLLFAETADRFRFVKFNLDE 358 (457) T ss_pred HHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH------HhhhcCccccCceEEEeechh Confidence 678889999999998871 133477889999999999999987643 3333333222221 111 Q ss_pred --------------------------ccccccCCCCCC---C Q lcl|NC_001629. 267 --------------------------KSSSRDSEPLGN---D 279 (279) Q Consensus 267 --------------------------~~~~~~~~~~~~---~ 279 (279) .-.-.+-+|+.+ | T Consensus 359 l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D 400 (457) T protein:vir:62 359 IKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcc Confidence 001112233322 2 No 42 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=98.39 E-value=7.7e-09 Score=65.06 Aligned_cols=277 Identities=13% Similarity=0.129 Sum_probs=144.8 Q ss_pred Cc---cc-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccceeeeeehhhh---- Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 71 (279) |. ++ -....|++|+=..+.+-.-+.+..-..+.=++..--|...+-..-++.+..+.+ .|.-...+.+++. T Consensus 52 l~~~~v~~ci~~ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~ 131 (422) T protein:vir:13 52 LKENTVYVCTKIRAESIGKLSLKIYKDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKII 131 (422) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 00 00 022334444433333311111100011222223344666666666677766544 5654444433321 Q ss_pred hhh---hhhcccch--------hhh---hhcCCCccEEEEeecceeeeeccc-----ccccc-chhhHHHHHHHHH--hh Q lcl|NC_001629. 72 KYY---AQRVNADQ--------FNI---LVREPNRRQVTIRTSDYEMLLNPF-----YGANP-QRFGVMFGMASNG--IG 129 (279) Q Consensus 72 ~~y---~~~v~~d~--------fN~---~v~~~~~~~vtlP~SDV~iieNPf-----~~V~~-ee~t~MLd~aLna--I~ 129 (279) ..| |.+|.+.. ++. -+..++.++.++|-+||..+-.|+ ++..+ +.+...++.+.++ .. T Consensus 132 ~L~~i~~~~v~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 211 (422) T protein:vir:13 132 GLYPINSDNVTKIIDDDNFLSSLSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFI 211 (422) T ss_pred EEEEECCcceEEEEcCCcceeccceEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHH Confidence 122 23333211 011 123455667889999998886443 23221 2333334443333 33 Q ss_pred hhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHh Q lcl|NC_001629. 130 RRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALS 207 (279) Q Consensus 130 ~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LyS 207 (279) .+. .+.+..++.++.+-.. +++-+++.+++++++-+-+++-+|+.+++.|-++++|.-.-.. ...+-.++.+.+.+. T Consensus 212 ~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~ 290 (422) T protein:vir:13 212 NKFFKNGLSIKGIVQYVGDL-DEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAA 290 (422) T ss_pred HHHHhccCCccEEEEeCCCC-CHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHH Confidence 333 5566799999998764 5666788888888887666667899999999999998743221 123344567888999 Q ss_pred hcCCccccccc------ccccceehhhhhhhHHHHHHHhcccccc----hhh----hhhhhh----------------ee Q lcl|NC_001629. 208 EYGMPRELLYG------QSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAYI----------------ST 257 (279) Q Consensus 208 q~GInekIL~G------taTeeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y~----------------tt 257 (279) .||||..+|-+ +..+++..+|+..+|.|++++.|.++.+ ..| .+++|- .+ T Consensus 291 ~fgVpp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~ 370 (422) T protein:vir:13 291 TFGMKSYHLNDLERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRI 370 (422) T ss_pred HhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHH Confidence 99999988843 3348899999999999999998774432 111 122221 11 Q ss_pred cccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 258 TAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 258 ta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) -..+|-+. ....| +-+|+ |-| T Consensus 371 ~~~~G~~T-~NE~R~~~gl~p~~ggD 395 (422) T protein:vir:13 371 GIQGGFIE-ANEARRRENLPPVEGGD 395 (422) T ss_pred HHhCCCcC-HHHHHHHhCCCCCCCcC Confidence 01111110 11111 11222 112 No 43 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=98.38 E-value=2.5e-08 Score=62.22 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=136.2 Q ss_pred Ccccc---------------cchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee Q lcl|NC_001629. 1 MSLFN---------------LSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY 64 (279) Q Consensus 1 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (279) .+.+. +..-|++++=..|.+-..+ +..-..+.-|+.-=-|...+-..-++.+..+ .+.|.-.. T Consensus 38 ~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 116 (412) T protein:vir:26 38 RSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 116 (412) T ss_pred ccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeecc-ccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEE Confidence 11111 1223444443333331100 0000112222222245555555555666654 44555433 Q ss_pred eeehhh----hhhh---hhhcccchhh---h---hhcCCCccEEEEeecceeeeecccc-----cccc-chhhHHHHHHH Q lcl|NC_001629. 65 RVWYGG----FKYY---AQRVNADQFN---I---LVREPNRRQVTIRTSDYEMLLNPFY-----GANP-QRFGVMFGMAS 125 (279) Q Consensus 65 ~~~~~~----~~~y---~~~v~~d~fN---~---~v~~~~~~~vtlP~SDV~iieNPf~-----~V~~-ee~t~MLd~aL 125 (279) .++.++ .++| |..|.+..-+ . -+..++.+++++|.+||.-|-+|.. +..+ +.+...++.+. T Consensus 117 ~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~ 196 (412) T protein:vir:26 117 LIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN 196 (412) T ss_pred EEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHH Confidence 333322 1333 3444443221 1 1344556688999999999976532 2211 12223334333 Q ss_pred HHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHH Q lcl|NC_001629. 126 NGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIE 203 (279) Q Consensus 126 naI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS 203 (279) ++-.-.+...+. ..+.++.+-.. +++-+++++++.+++. +.-+|+.+++.|.++++|.-.-.. ...+-..+.+. T Consensus 197 a~~~~~~~~~~~~~~~i~~~~~~l-~~e~~~~~~~~~~~~~---~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 272 (412) T protein:vir:26 197 AVRTFNLTEMQKPDSFMLKYGSNV-GKEKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRE 272 (412) T ss_pred HHHHHHHHhcCCCCceEEecCCCC-CHHHHHHHHHHHHHHh---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 332223433333 34556666664 4555677777777654 345889999999999999632111 11222335678 Q ss_pred HHHhhcCCcccccccccc------cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCc--cccccccc--c-c Q lcl|NC_001629. 204 IALSEYGMPRELLYGQSN------EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGG--KIESKSSS--R-D 272 (279) Q Consensus 204 ~LySq~GInekIL~GtaT------eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg--~~~s~~~~--~-~ 272 (279) +.+..||||..++.+..+ |++.++|+..+|.|++++.|. |++++.++...++. .++-..+. | | T Consensus 273 ~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~------~ln~kLl~~~~~~~~~~~~fd~~~l~~~d 346 (412) T protein:vir:26 273 RVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE------EFNRKLLTKTDREKNRYFKFNVKSYLRAD 346 (412) T ss_pred HHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCcccccCcceEEeechhhhccC Confidence 899999999999976443 788899999999999999876 55556665543321 12111110 0 0 Q ss_pred CC--------CCCCC Q lcl|NC_001629. 273 SE--------PLGND 279 (279) Q Consensus 273 ~~--------~~~~~ 279 (279) .+ -+++. T Consensus 347 ~~~~~~~~~~~~~~G 361 (412) T protein:vir:26 347 SATQAEVYFKAVRSG 361 (412) T ss_pred HHHHHHHHHHHHhCC Confidence 00 00000 No 44 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=98.37 E-value=1.6e-08 Score=63.26 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=131.5 Q ss_pred Ccc----cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |.. --++.-|++++=..+.+-+-.....-..+.=|+..--|-..+-..-++.+..+ .+.|.-...+..++. T Consensus 68 l~~~~V~acv~~Ia~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~ 147 (441) T protein:vir:98 68 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPM 147 (441) T ss_pred hccHHHHHHHHHHHHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEE Confidence 000 01223334443333332111000000001111112223333333334444443 233443222222221 Q ss_pred hhh---hhhcccch---------hhhhhcCCCccEEEEeecceeeee----cccccccc-chhhHHHH--HHHHHhhhhh Q lcl|NC_001629. 72 KYY---AQRVNADQ---------FNILVREPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFG--MASNGIGRRL 132 (279) Q Consensus 72 ~~y---~~~v~~d~---------fN~~v~~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd--~aLnaI~~KL 132 (279) +.| |.+|.+.. +...--.+...+.++|-+||.-|- +++++..+ +.+...++ .+.....+++ T Consensus 148 ~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~ 227 (441) T protein:vir:98 148 NLTFRKTSEIELKLDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNF 227 (441) T ss_pred EEEEEcCceeEEEECCCCcEEEEEEEeccCcceeeEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH Confidence 111 12222110 100001234557889999998773 44454433 22333333 3334444555 Q ss_pred -hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHH------HHH Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAI------EIA 205 (279) Q Consensus 133 -eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lk------S~L 205 (279) .+.+..++.++++-...+++-+++++++.+++..-+++-+|+.+++.|.++++|. .+..|++++. .+. T Consensus 228 f~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~-----~~~~d~q~~e~r~~~~~~I 302 (441) T protein:vir:98 228 LRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE-----VDTEVLKLIRENKSSTREI 302 (441) T ss_pred HhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc-----CChhHHHHHHHHHHhHHHH Confidence 5566699999999877778888888888888776666668899999999999995 3455665554 467 Q ss_pred HhhcCCccccccc---ccccceehhhhhhhHHHHHHHhcccccch--hh---hhhhhhee----------------cccC Q lcl|NC_001629. 206 LSEYGMPRELLYG---QSNEVTIIAFAIQKVLPLLKQHDKNIVFN--QE---NFVAYIST----------------TAKG 261 (279) Q Consensus 206 ySq~GInekIL~G---taTeeqkiAyy~stV~PLLkQyek~lvf~--~E---~fv~y~tt----------------ta~g 261 (279) +..||||..+|.+ +++.+|+-.+|..+|.|+++++|.+|-++ ++ .+++|=+. -... T Consensus 303 a~~fgVPp~~lg~~~~~~s~~q~~~~y~~tl~P~~~~ie~~ln~~L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~ 382 (441) T protein:vir:98 303 AGVFGIPLHKFGIETANMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDS 382 (441) T ss_pred HHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEEechhhhccCHHHHHHHHHHHHhC Confidence 8889999999943 23434545556679999999987744331 00 11111000 0001 Q ss_pred cccccccccc---cCCCC-CCC Q lcl|NC_001629. 262 GKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 262 g~~~s~~~~~---~~~~~-~~~ 279 (279) |- -+.-.-| +-+|+ |.| T Consensus 383 G~-~T~NE~R~~~gl~pi~gGd 403 (441) T protein:vir:98 383 GK-MNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred CC-cCHHHHHHHhCCCCCCCCC Confidence 11 0111111 11232 112 No 45 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=98.36 E-value=1.6e-08 Score=63.35 Aligned_cols=266 Identities=13% Similarity=0.129 Sum_probs=144.6 Q ss_pred Ccc----cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |.. --++..|.+++=-.|.+.++..+.|+- .-|.+-+-..-++.++.+ .+.|.-...+-.++. T Consensus 45 ~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l~~--------~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 116 (386) T protein:vir:48 45 LRNSDLFSIINQLSNDLATVKLTASRKQLQGIID--------NPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDM 116 (386) T ss_pred hcchHHHHHHHHHHHhhccCceeeccchhHHHhh--------cCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE Confidence 100 123345666666667777776665544 346666666666777655 455665333322221 Q ss_pred hhh---hhhcccchhh---hh-----hc-CCCccEEEEeecceeeeecc-----ccccccc-hhhHHHHHHHHHhh---h Q lcl|NC_001629. 72 KYY---AQRVNADQFN---IL-----VR-EPNRRQVTIRTSDYEMLLNP-----FYGANPQ-RFGVMFGMASNGIG---R 130 (279) Q Consensus 72 ~~y---~~~v~~d~fN---~~-----v~-~~~~~~vtlP~SDV~iieNP-----f~~V~~e-e~t~MLd~aLnaI~---~ 130 (279) .+| |.+|.+...+ .+ +. ......+++|-+||.-|-.| +++..+= .....++.++++-. + T Consensus 117 ~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~ 196 (386) T protein:vir:48 117 KWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLN 196 (386) T ss_pred EEEEecCceeEEEEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHH Confidence 223 4556554321 10 11 11234578899999877433 3333221 22222444443322 3 Q ss_pred hhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhc Q lcl|NC_001629. 131 RLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) Q Consensus 131 KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~ 209 (279) ...+.+..++.++.|-....+..+ +.++.. .+..++-+|+.+++.|.++++|...-..+ ..+-.++.+.+.+..| T Consensus 197 ~~~ng~~~~~ii~~~~~~~~e~~~-~~~~~~---~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~f 272 (386) T protein:vir:48 197 SLKNALNANGILKIKGGGLLDFKT-KLSRSR---QAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVY 272 (386) T ss_pred HHhccCCcceEEEeCCCCCHHHHH-HHHHHH---HHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHh Confidence 335667799999998875555443 333333 34445568999999999999996432221 2333467788999999 Q ss_pred CCccccccc----ccccceehhhhhhhHHHHHHHhcccccc---h------------h-hhhhhhheecccCcccccccc Q lcl|NC_001629. 210 GMPRELLYG----QSNEVTIIAFAIQKVLPLLKQHDKNIVF---N------------Q-ENFVAYISTTAKGGKIESKSS 269 (279) Q Consensus 210 GInekIL~G----taTeeqkiAyy~stV~PLLkQyek~lvf---~------------~-E~fv~y~ttta~gg~~~s~~~ 269 (279) |||..+|-+ +..+++.++|+..+|.|++++.+.+|-. . + +.+...+++=.++|-+ +... T Consensus 273 gVPp~~lg~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~-t~nE 351 (386) T protein:vir:48 273 GIPENVVGGQGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKLSCDVDADILPAVDPTGSNSVSRINSMVKSGTL-AQNQ 351 (386) T ss_pred CCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcchhhhhccChHHHHHHHHHHHhCCCc-CHHH Confidence 999999833 3457899999999999999997765432 1 0 1111112222223322 1111 Q ss_pred ccc---CCC-CCCC Q lcl|NC_001629. 270 SRD---SEP-LGND 279 (279) Q Consensus 270 ~~~---~~~-~~~~ 279 (279) .|. ..| .++| T Consensus 352 ~r~~lg~~~~~~~~ 365 (386) T protein:vir:48 352 GLYILQQAEILPKE 365 (386) T ss_pred HHHHhhcCCCCCcc Confidence 121 111 1111 No 46 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=98.36 E-value=1.1e-08 Score=64.23 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=128.9 Q ss_pred Ccccccchhhccceeeeeee----cCcchh-----H----HHHHHH------------------HHHHHhhcccchhhhh Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTV----QDPTTD-----L----LLGKLL------------------GLVSYFDNVDYSEASK 49 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~----~~~~~~------------------~~~~~~~~~~~~~~~~ 49 (279) .+. +++-|++|+=-.+.| .|...+ . .++... -+.--=-|...+-..- T Consensus 53 ~~~--v~~ia~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f 130 (460) T protein:vir:10 53 YSC--ISQMAAKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADI 130 (460) T ss_pred HHH--HHHHHHhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHH Confidence 111 122222222211211 111100 0 000000 0000013444444444 Q ss_pred hhhhhhh-hhccceeeeeehh------hh--hhh---hhhcccchhhh------------hhcCCCccEEEEeecceeee Q lcl|NC_001629. 50 LEDLFFW-ALQGQEVYRVWYG------GF--KYY---AQRVNADQFNI------------LVREPNRRQVTIRTSDYEML 105 (279) Q Consensus 50 ~~~~~~~-~~~~~~~~~~~~~------~~--~~y---~~~v~~d~fN~------------~v~~~~~~~vtlP~SDV~ii 105 (279) ++.+..+ .+.|.-...+... |. +.| |..|.+.+..- ..-..+...+++|-+||.-| T Consensus 131 ~~~~~~~lll~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~ 210 (460) T protein:vir:10 131 YSLYKTYMRLNGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHT 210 (460) T ss_pred HHHHHHHHhhcCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEE Confidence 5555533 3445432222221 11 112 34444433211 00012445688999999877 Q ss_pred ec--c--------ccccccc-hhhHHHHH--HHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_001629. 106 LN--P--------FYGANPQ-RFGVMFGM--ASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREF 171 (279) Q Consensus 106 eN--P--------f~~V~~e-e~t~MLd~--aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~ 171 (279) -. | +++..+- .....++. +......+.-.+|. ..+.++.+-. -+++-+++++++++++..-+++- T Consensus 211 r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~g~~n~ 289 (460) T protein:vir:10 211 KYANPNFDLQGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQNGGVFGFIHGGSTG-LTQPQADSLKQRLTEMDKSPDRL 289 (460) T ss_pred ecCCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCC-CCHHHHHHHHHHHHHHhcCcccc Confidence 42 2 3333222 22222333 33333444433444 5554555544 45666788888888877656666 Q ss_pred CCeeeccCCceeEEccCcc-ccccHHHHHHHHHHHHhhcCCcccccc----c----ccccceehhhhhhhHHHHHHHhcc Q lcl|NC_001629. 172 NGVSVIGSDDDIKQIQPDY-SGSLQNDANLAIEIALSEYGMPRELLY----G----QSNEVTIIAFAIQKVLPLLKQHDK 242 (279) Q Consensus 172 ~GvtYid~geei~QLq~DY-Sts~~~die~lkS~LySq~GInekIL~----G----taTeeqkiAyy~stV~PLLkQyek 242 (279) +|+.+++.|-++++|.-.- +....+-.++.+.+.+..||||..+|- + +..|++.++|+..+|.|+++++|. T Consensus 290 g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~ 369 (460) T protein:vir:10 290 SQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQ 369 (460) T ss_pred CCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH Confidence 8999999999999996432 112234445777899999999999883 2 234788999999999999999876 Q ss_pred cccchhhhhhhhheeccc--Cccccc-------------------------ccccc---cCCCCC---CC Q lcl|NC_001629. 243 NIVFNQENFVAYISTTAK--GGKIES-------------------------KSSSR---DSEPLG---ND 279 (279) Q Consensus 243 ~lvf~~E~fv~y~ttta~--gg~~~s-------------------------~~~~~---~~~~~~---~~ 279 (279) ++ +++.++...+ |=.|+- ...-| +-+|+. -| T Consensus 370 ~l------n~kl~~~~~~~~~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD 433 (460) T protein:vir:10 370 AF------DKKFIKRFKGYENAVIEWDISELPEMQTDMVAMASWLNTIPVTPNEIRIAMKYETLNQDGMD 433 (460) T ss_pred HH------HHhhcCcccccCCceEEeecchhhhHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCC Confidence 43 3333322100 000000 00001 123331 12 No 47 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=98.34 E-value=1.5e-08 Score=63.48 Aligned_cols=277 Identities=13% Similarity=0.113 Sum_probs=141.3 Q ss_pred Cc---cc-ccchhhccceeeeeeec---C-cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccce-eeeeehhh Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQ---D-PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQE-VYRVWYGG 70 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 70 (279) |. .| -.+..|++++=..|.|. + -.....-..+.-|+..=-|-..+-..-++.+..+. +.|.- ++.++-+| T Consensus 40 l~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g 119 (411) T protein:vir:81 40 LSEATYFACLKILSESLGKLPLKMYQKTERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGP 119 (411) T ss_pred hccHHHHHHHHHHHHhHhhCceeEEEecCCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCC Confidence 10 00 12233444443333331 0 00000001122222223455555556666666554 44542 33333333 Q ss_pred hh-----hhhhhcccchhhh-----------hhcC-CCccEEEEeecceeeee-c----cccccccc-hhhHHHHHHHH- Q lcl|NC_001629. 71 FK-----YYAQRVNADQFNI-----------LVRE-PNRRQVTIRTSDYEMLL-N----PFYGANPQ-RFGVMFGMASN- 126 (279) Q Consensus 71 ~~-----~y~~~v~~d~fN~-----------~v~~-~~~~~vtlP~SDV~iie-N----Pf~~V~~e-e~t~MLd~aLn- 126 (279) -- .-|..|.+..-+. -+.. .+.+.+++|-+||..|- + ++++..+- ....-++.+.+ T Consensus 120 ~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~ 199 (411) T protein:vir:81 120 QLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALES 199 (411) T ss_pred ceEEEEEECCceEEEEEcCcccccccceEEEEEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 21 2234443321110 0111 24467889999998884 2 23333221 12222333333 Q ss_pred -Hhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHHHH Q lcl|NC_001629. 127 -GIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLAIE 203 (279) Q Consensus 127 -aI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~lkS 203 (279) ....+. .+.+..++.++++-.. +++-+++++++.+++..-+++-+++.+++.|-++++|.-.-. ....+-.++.++ T Consensus 200 ~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 278 (411) T protein:vir:81 200 QKFMNNLYKTGLTGKAVLEYTGDL-NQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTAL 278 (411) T ss_pred HHHHHHHHhccCCCceEEEeCCCC-CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHH Confidence 333344 5566688899998774 466678899999988877777789999999999999963221 112233467788 Q ss_pred HHHhhcCCccccc----cccc--ccceehhhhhhhHHHHHHHhcccccc----hhh----hhhhh--------------- Q lcl|NC_001629. 204 IALSEYGMPRELL----YGQS--NEVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAY--------------- 254 (279) Q Consensus 204 ~LySq~GInekIL----~Gta--TeeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y--------------- 254 (279) +.+..||||..+| .+++ .|++.++|+..+|.|++++.+.+|.. ..| .+++| T Consensus 279 ~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~ 358 (411) T protein:vir:81 279 QIAAAFGIKPNQINDYEKSSYASAEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMD 358 (411) T ss_pred HHHHHhCCCHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHH Confidence 9999999999998 3332 26778899999999999998775432 122 11222 Q ss_pred -heecccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 255 -ISTTAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 255 -~ttta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) +++-...|-+ +.-..| +-+|+ |-| T Consensus 359 ~~~~~~~~g~~-t~NE~R~~~gl~p~~ggD 387 (411) T protein:vir:81 359 SLSTAVQNGIM-TPNEARDYLDMPADDYGN 387 (411) T ss_pred HHHHHHhCCCc-CHHHHHHHhCCCCCCCCC Confidence 1111111211 111111 11222 112 No 48 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=98.33 E-value=3.7e-08 Score=61.32 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=132.3 Q ss_pred Ccc----cccchhhccceeeeeeecC----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQD----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (279) |.. --++..|++|+=..+.+-. .+++-+ .=|+..--|-..+-.+-++.+... .+.|.....+...+. T Consensus 68 l~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~----~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~ 143 (441) T protein:vir:79 68 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRI----VNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKT 143 (441) T ss_pred hccHHHHHHHHHHHHhhccCceeeecCccccccchH----HHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 110 0123334444433332211 111111 111111223333333334444442 344554322222221 Q ss_pred ----hhh---hhhcccc--hhhh------hhc-CCCccEEEEeecceeeee----cccccccc-chhhHHHH--HHHHHh Q lcl|NC_001629. 72 ----KYY---AQRVNAD--QFNI------LVR-EPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFG--MASNGI 128 (279) Q Consensus 72 ----~~y---~~~v~~d--~fN~------~v~-~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd--~aLnaI 128 (279) +-| |..|.+. .-.. .+. .++..++++|-+||.-|- +++++..+ +.+...++ .+.... T Consensus 144 G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~ 223 (441) T protein:vir:79 144 GEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDF 223 (441) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHH Confidence 111 1222211 1000 011 244567789999997773 33344433 22333333 333444 Q ss_pred hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH------ Q lcl|NC_001629. 129 GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA------ 201 (279) Q Consensus 129 ~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l------ 201 (279) .+++ .+.+..++.++++-...+++-+++++++.+++..-+++-+++.+++.|.++++|. .+.+|++++ T Consensus 224 ~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~-----~~~~d~q~~e~~~~~ 298 (441) T protein:vir:79 224 LNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE-----VDTEVLKLIRENKSS 298 (441) T ss_pred HHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc-----CChhHHHHHHHHHHh Confidence 4555 5666799999999877788888888888888776555668899999999999995 345666655 Q ss_pred HHHHHhhcCCccccccc---ccccceehhhhhhhHHHHHHHhcccccch--hh---hhhhhhe----------------e Q lcl|NC_001629. 202 IEIALSEYGMPRELLYG---QSNEVTIIAFAIQKVLPLLKQHDKNIVFN--QE---NFVAYIS----------------T 257 (279) Q Consensus 202 kS~LySq~GInekIL~G---taTeeqkiAyy~stV~PLLkQyek~lvf~--~E---~fv~y~t----------------t 257 (279) +.+.+..||||..+|.. +++.+|.-.+|..+|.|+++++|.+|-++ ++ ..++|=+ + T Consensus 299 ~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~ 378 (441) T protein:vir:79 299 TREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKI 378 (441) T ss_pred HHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHH Confidence 55788999999999842 22324444556679999999988755431 00 0111100 0 Q ss_pred cccCccc--ccccccccCCCCC-CC Q lcl|NC_001629. 258 TAKGGKI--ESKSSSRDSEPLG-ND 279 (279) Q Consensus 258 ta~gg~~--~s~~~~~~~~~~~-~~ 279 (279) -.+.|-+ |-.-.--+-+|+. .| T Consensus 379 ~i~~G~~T~NE~R~~~gl~Pi~ggd 403 (441) T protein:vir:79 379 NIDSGKMNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCC Confidence 0011110 0000011122321 11 No 49 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=98.33 E-value=3.7e-08 Score=61.32 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=132.3 Q ss_pred Ccc----cccchhhccceeeeeeecC----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQD----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF 71 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (279) |.. --++..|++|+=..+.+-. .+++-+ .=|+..--|-..+-.+-++.+... .+.|.....+...+. T Consensus 68 l~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~----~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~ 143 (441) T protein:vir:94 68 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRI----VNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKT 143 (441) T ss_pred hccHHHHHHHHHHHHhhccCceeeecCccccccchH----HHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 110 0123334444433332211 111111 111111223333333334444442 344554322222221 Q ss_pred ----hhh---hhhcccc--hhhh------hhc-CCCccEEEEeecceeeee----cccccccc-chhhHHHH--HHHHHh Q lcl|NC_001629. 72 ----KYY---AQRVNAD--QFNI------LVR-EPNRRQVTIRTSDYEMLL----NPFYGANP-QRFGVMFG--MASNGI 128 (279) Q Consensus 72 ----~~y---~~~v~~d--~fN~------~v~-~~~~~~vtlP~SDV~iie----NPf~~V~~-ee~t~MLd--~aLnaI 128 (279) +-| |..|.+. .-.. .+. .++..++++|-+||.-|- +++++..+ +.+...++ .+.... T Consensus 144 G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~ 223 (441) T protein:vir:94 144 GEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDF 223 (441) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHH Confidence 111 1222211 1000 011 244567789999997773 33344433 22333333 333444 Q ss_pred hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH------ Q lcl|NC_001629. 129 GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA------ 201 (279) Q Consensus 129 ~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l------ 201 (279) .+++ .+.+..++.++++-...+++-+++++++.+++..-+++-+++.+++.|.++++|. .+.+|++++ T Consensus 224 ~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~-----~~~~d~q~~e~~~~~ 298 (441) T protein:vir:94 224 LNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE-----VDTEVLKLIRENKSS 298 (441) T ss_pred HHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc-----CChhHHHHHHHHHHh Confidence 4555 5666799999999877788888888888888776555668899999999999995 345666655 Q ss_pred HHHHHhhcCCccccccc---ccccceehhhhhhhHHHHHHHhcccccch--hh---hhhhhhe----------------e Q lcl|NC_001629. 202 IEIALSEYGMPRELLYG---QSNEVTIIAFAIQKVLPLLKQHDKNIVFN--QE---NFVAYIS----------------T 257 (279) Q Consensus 202 kS~LySq~GInekIL~G---taTeeqkiAyy~stV~PLLkQyek~lvf~--~E---~fv~y~t----------------t 257 (279) +.+.+..||||..+|.. +++.+|.-.+|..+|.|+++++|.+|-++ ++ ..++|=+ + T Consensus 299 ~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~ 378 (441) T protein:vir:94 299 TREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKI 378 (441) T ss_pred HHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHH Confidence 55788999999999842 22324444556679999999988755431 00 0111100 0 Q ss_pred cccCccc--ccccccccCCCCC-CC Q lcl|NC_001629. 258 TAKGGKI--ESKSSSRDSEPLG-ND 279 (279) Q Consensus 258 ta~gg~~--~s~~~~~~~~~~~-~~ 279 (279) -.+.|-+ |-.-.--+-+|+. .| T Consensus 379 ~i~~G~~T~NE~R~~~gl~Pi~ggd 403 (441) T protein:vir:94 379 NIDSGKMNIDEIRQRDGLAPIPGGN 403 (441) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCC Confidence 0011110 0000011122321 11 No 50 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=98.33 E-value=2.4e-08 Score=62.39 Aligned_cols=260 Identities=13% Similarity=0.122 Sum_probs=135.7 Q ss_pred Cc---cc-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |. ++ -.+..|++++=..|++.+...+.|+-+ -|-..+-..-++.++.. .+.|.-...+..++. T Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~l~~~--------PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 122 (392) T protein:vir:10 51 LRNSDLFSIILQLSSDLAIVKINAEKKKNQGIIDN--------PSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) T ss_pred hccHHHHHHHHHHHHhhccCceeeccchhhhHhhc--------CCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE Confidence 11 11 234456777777788888776655432 45555555566666644 455664333333321 Q ss_pred hhh---hhhcccchhh--h-h---h--c-CCCccEEEEeecceeeeeccc-----ccccc-chhhHHHHHHHHHh---hh Q lcl|NC_001629. 72 KYY---AQRVNADQFN--I-L---V--R-EPNRRQVTIRTSDYEMLLNPF-----YGANP-QRFGVMFGMASNGI---GR 130 (279) Q Consensus 72 ~~y---~~~v~~d~fN--~-~---v--~-~~~~~~vtlP~SDV~iieNPf-----~~V~~-ee~t~MLd~aLnaI---~~ 130 (279) ..| |.+|.+..-. . + + . ......+++|-+||.-+-.+- ++..+ +.....++.+.++- .+ T Consensus 123 ~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~ 202 (392) T protein:vir:10 123 KWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS 202 (392) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 223 2444333211 0 0 0 0 112235789999998775542 33322 12222233333332 22 Q ss_pred hhhccCceEEEEecCcccch-HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhh Q lcl|NC_001629. 131 RLDSQAQIKIYWKTKVSSGL-KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSE 208 (279) Q Consensus 131 KLeqqgslKifikL~i~~~~-ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq 208 (279) -..+.+..++.++++-.... ++.++ +..++... +.+-+|+.+++.|.++++|.-.-.. ...+-.++.+.+.+.. T Consensus 203 ~f~ng~~p~gil~~~~~~~~~~~~~~---~~~~~~~~-~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) T protein:vir:10 203 SLNSSLNVPGVLTVKGGGLLSDKDKA---SRSRSFMK-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) T ss_pred HHhccCCCceEEEeCCCCCchHHHHH---HHHHHHhc-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 23666778899988755323 22222 22333333 3345789999999999999743221 1233456777899999 Q ss_pred cCCccccccc----ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhhee----------------------cccCc Q lcl|NC_001629. 209 YGMPRELLYG----QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYIST----------------------TAKGG 262 (279) Q Consensus 209 ~GInekIL~G----taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~tt----------------------ta~gg 262 (279) ||||..+|-+ +++.+|..+|+..+|.|++++.+.++ .++.++. =.++| T Consensus 279 fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l------~~~L~~~~~~d~~~~~~~d~~~~~~~~~~l~~~g 352 (392) T protein:vir:10 279 YGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISEL------EYKLSDHISVNMRPAIDPLGDNYLSTISTATRWG 352 (392) T ss_pred hCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------HHhccccccccchhhhccCHHHHHHHHHHHHhCC Confidence 9999999933 33457889999999999999977633 3333321 00111 Q ss_pred ccccccccccCC-CCCCC Q lcl|NC_001629. 263 KIESKSSSRDSE-PLGND 279 (279) Q Consensus 263 ~~~s~~~~~~~~-~~~~~ 279 (279) .+. .-..|... -.|-. T Consensus 353 ~~t-~nE~r~~l~~~g~~ 369 (392) T protein:vir:10 353 ALA-ENQATFVLQEAGYI 369 (392) T ss_pred CcC-HHHHHHHHHhcCCC Confidence 000 00000000 00000 No 51 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=98.33 E-value=2.4e-08 Score=62.39 Aligned_cols=260 Identities=13% Similarity=0.122 Sum_probs=135.7 Q ss_pred Cc---cc-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |. ++ -.+..|++++=..|++.+...+.|+-+ -|-..+-..-++.++.. .+.|.-...+..++. T Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~l~~~--------PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 122 (392) T protein:vir:39 51 LRNSDLFSIILQLSSDLAIVKINAEKKKNQGIIDN--------PSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) T ss_pred hccHHHHHHHHHHHHhhccCceeeccchhhhHhhc--------CCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE Confidence 11 11 234456777777788888776655432 45555555566666644 455664333333321 Q ss_pred hhh---hhhcccchhh--h-h---h--c-CCCccEEEEeecceeeeeccc-----ccccc-chhhHHHHHHHHHh---hh Q lcl|NC_001629. 72 KYY---AQRVNADQFN--I-L---V--R-EPNRRQVTIRTSDYEMLLNPF-----YGANP-QRFGVMFGMASNGI---GR 130 (279) Q Consensus 72 ~~y---~~~v~~d~fN--~-~---v--~-~~~~~~vtlP~SDV~iieNPf-----~~V~~-ee~t~MLd~aLnaI---~~ 130 (279) ..| |.+|.+..-. . + + . ......+++|-+||.-+-.+- ++..+ +.....++.+.++- .+ T Consensus 123 ~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~ 202 (392) T protein:vir:39 123 KWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS 202 (392) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 223 2444333211 0 0 0 0 112235789999998775542 33322 12222233333332 22 Q ss_pred hhhccCceEEEEecCcccch-HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhh Q lcl|NC_001629. 131 RLDSQAQIKIYWKTKVSSGL-KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSE 208 (279) Q Consensus 131 KLeqqgslKifikL~i~~~~-ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq 208 (279) -..+.+..++.++++-.... ++.++ +..++... +.+-+|+.+++.|.++++|.-.-.. ...+-.++.+.+.+.. T Consensus 203 ~f~ng~~p~gil~~~~~~~~~~~~~~---~~~~~~~~-~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) T protein:vir:39 203 SLNSSLNVPGVLTVKGGGLLSDKDKA---SRSRSFMK-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) T ss_pred HHhccCCCceEEEeCCCCCchHHHHH---HHHHHHhc-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 23666778899988755323 22222 22333333 3345789999999999999743221 1233456777899999 Q ss_pred cCCccccccc----ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhhee----------------------cccCc Q lcl|NC_001629. 209 YGMPRELLYG----QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYIST----------------------TAKGG 262 (279) Q Consensus 209 ~GInekIL~G----taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~tt----------------------ta~gg 262 (279) ||||..+|-+ +++.+|..+|+..+|.|++++.+.++ .++.++. =.++| T Consensus 279 fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l------~~~L~~~~~~d~~~~~~~d~~~~~~~~~~l~~~g 352 (392) T protein:vir:39 279 YGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISEL------EYKLSDHISVNMRPAIDPLGDNYLSTISTATRWG 352 (392) T ss_pred hCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------HHhccccccccchhhhccCHHHHHHHHHHHHhCC Confidence 9999999933 33457889999999999999977633 3333321 00111 Q ss_pred ccccccccccCC-CCCCC Q lcl|NC_001629. 263 KIESKSSSRDSE-PLGND 279 (279) Q Consensus 263 ~~~s~~~~~~~~-~~~~~ 279 (279) .+. .-..|... -.|-. T Consensus 353 ~~t-~nE~r~~l~~~g~~ 369 (392) T protein:vir:39 353 ALA-ENQATFVLQEAGYI 369 (392) T ss_pred CcC-HHHHHHHHHhcCCC Confidence 000 00000000 00000 No 52 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=98.30 E-value=4.3e-08 Score=60.96 Aligned_cols=270 Identities=16% Similarity=0.166 Sum_probs=130.4 Q ss_pred Ccc----cccchhhccceeeeeee---c-Cc----chhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhccceeeeee Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTV---Q-DP----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF-WALQGQEVYRVW 67 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 67 (279) |.. --.+..|++++=-.+.| . |. ..+--+-. |+..=-|..-+-..-++.+.. +.+.|.-...+. T Consensus 42 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~---lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~ 118 (419) T protein:vir:57 42 LALSAVRACVTLLAESVAQLPCVLYRRTENGGREIAFDHPLHD---LIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLID 118 (419) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEEcCCCceeccccchHHH---HHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 100 01122334443322322 1 10 01111111 222223444444444444443 334565422222 Q ss_pred hh--hh--hhh---hhhcccchh--hhhhcCCCccEEEEeecceeeeecc----cccccc-chhhHHHHHHHH--Hhhhh Q lcl|NC_001629. 68 YG--GF--KYY---AQRVNADQF--NILVREPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGMASN--GIGRR 131 (279) Q Consensus 68 ~~--~~--~~y---~~~v~~d~f--N~~v~~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~aLn--aI~~K 131 (279) .. |. +.| |.+|.+..- ....-+-....-++|.++|..+-+| +++..+ +..-.-++.+++ ....+ T Consensus 119 r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~~~~~~~~~~vih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~ 198 (419) T protein:vir:57 119 RNGRGDITELIPINPHKVIVLKGPDGMPYYDIPSIGEILPMRMVHHIKSFSLDGYIGTSPIQTNPDVLGLGIAVEQHAAQ 198 (419) T ss_pred ECCCCcEEEEEEEcCcceEEEECCCceEEEEEcCCceEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 22 21 222 233333221 1100000001125888999887543 233221 122222333332 23444 Q ss_pred h-hccCceEEEEecCcccc---hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc-HHHHHHHHHHHH Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSG---LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIAL 206 (279) Q Consensus 132 L-eqqgslKifikL~i~~~---~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~-~~die~lkS~Ly 206 (279) + .+.+..++.++.|-+.+ .++-+++.+++.++...-+.+-+++.+++.|.++++|...-.-+. .+-.++.+.+.+ T Consensus 199 ~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia 278 (419) T protein:vir:57 199 VFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVC 278 (419) T ss_pred HHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHH Confidence 4 55667888999876543 345555555555555444555678999999999999975332222 223357778999 Q ss_pred hhcCCcccccc----cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCc-cccccccc--------- Q lcl|NC_001629. 207 SEYGMPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGG-KIESKSSS--------- 270 (279) Q Consensus 207 Sq~GInekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg-~~~s~~~~--------- 270 (279) ..||||..++- ++++ |++.++|+..+|.|+++++|. |++++.++...++| .++-..+. T Consensus 279 ~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~------~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~ 352 (419) T protein:vir:57 279 RLYKVPPHMIQDLQKSTNNNIEHQGLQYVIYTMLAILKRHES------AMMRDLLLPSERRDFYIEFNVSSLLRGDQKSR 352 (419) T ss_pred HHhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH------HHHhhccCccccCCeEEEEechhhhccCHHHH Confidence 99999999993 3333 889999999999999999876 44455554433322 12111100 Q ss_pred ------------------c---cCCCC-CCC Q lcl|NC_001629. 271 ------------------R---DSEPL-GND 279 (279) Q Consensus 271 ------------------~---~~~~~-~~~ 279 (279) | +-+|+ |.| T Consensus 353 ~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 383 (419) T protein:vir:57 353 YESYALGRQWGWLSVNDIRRMENLTPIPGGD 383 (419) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcC Confidence 0 11121 111 No 53 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=98.29 E-value=3e-08 Score=61.86 Aligned_cols=271 Identities=14% Similarity=0.145 Sum_probs=134.9 Q ss_pred Ccc----cccchhhccceeeeeee--c--CcchhHHH-HHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTV--Q--DPTTDLLL-GKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGG 70 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 70 (279) |.. --++..|++++=..|.| . |....... ..+.=|+..=-|...+-..-.+.+..+. +.|.-...+-.++ T Consensus 44 l~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~ 123 (421) T protein:vir:10 44 LALSAVRACVTLLAESVAQLPVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDG 123 (421) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC Confidence 000 01233444444333333 1 11000000 0122222233455555555556655444 4565433333332 Q ss_pred h----hhh---hhhccc--chhhhhh-c-CCCccEEEEeecceeeeecc----cccccc-chhhHHHHH--HHHHhhhhh Q lcl|NC_001629. 71 F----KYY---AQRVNA--DQFNILV-R-EPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGM--ASNGIGRRL 132 (279) Q Consensus 71 ~----~~y---~~~v~~--d~fN~~v-~-~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~--aLnaI~~KL 132 (279) . ++| |.+|.+ +.....+ + .... -++|-++|..+-.+ +++..+ +.+..-++. +......++ T Consensus 124 ~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~g--~~~~~~eiih~~~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~ 201 (421) T protein:vir:10 124 KGYPKELIPINPKKVIVLKGPDGMPYYEIPEIG--ETLPMRMMHHVKVFSLDGYIGSSPIQTNADVLGLNLAVEEHASAV 201 (421) T ss_pred CCcEEEEEEecCceEEEEECCCceEEEEEcCCC--cEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 1 222 233332 1110000 0 0111 25788888776543 222222 122222333 223333444 Q ss_pred -hccCceEEEEecCcccc---hHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc-HHHHHHHHHHHHh Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSG---LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALS 207 (279) Q Consensus 133 -eqqgslKifikL~i~~~---~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~-~~die~lkS~LyS 207 (279) .+.+..++.+++|-+.. .++-+++.+++.+++..-+.+-+|+.+++.|-++++|...-.-+. .+-.++.+.+.+. T Consensus 202 f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~ 281 (421) T protein:vir:10 202 FRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCR 281 (421) T ss_pred HhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHH Confidence 56677999999887643 677777788888777765666789999999999999974322111 2223467888899 Q ss_pred hcCCcccccc----cc--cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCc-ccccc------------- Q lcl|NC_001629. 208 EYGMPRELLY----GQ--SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGG-KIESK------------- 267 (279) Q Consensus 208 q~GInekIL~----Gt--aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg-~~~s~------------- 267 (279) .||||..++- ++ ..|++.++|+..+|.|+++++|.+| +++.++.-.+.| .++-. T Consensus 282 ~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~l------n~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~ 355 (421) T protein:vir:10 282 LYKIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGAL------QRDLLLPSERRDLYIEFNVSGLLRGDQKSRY 355 (421) T ss_pred HhCCCHHHcCCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHH------hhhccCccccCCeEEEEechhhhccCHHHHH Confidence 9999998883 22 2278889999999999999987744 333333322111 11100 Q ss_pred --------------cc---cccCCCC-CCC Q lcl|NC_001629. 268 --------------SS---SRDSEPL-GND 279 (279) Q Consensus 268 --------------~~---~~~~~~~-~~~ 279 (279) -. .-+-+|+ |-| T Consensus 356 ~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 385 (421) T protein:vir:10 356 ESYALGRQWGWLSVNDIRRMENLPPIAGGD 385 (421) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 00 0111222 111 No 54 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=98.25 E-value=4.4e-08 Score=60.92 Aligned_cols=261 Identities=16% Similarity=0.153 Sum_probs=133.0 Q ss_pred Ccccc-cchhhccceeeeeeecCcch---------hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeehhh Q lcl|NC_001629. 1 MSLFN-LSRRAEDVSFSTFTVQDPTT---------DLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWYGG 70 (279) Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (279) ..++. .+.-|++++=..++|.+.+. +--+-.| +..=-|-..+-..-.+.+..+++-.-+.|-+.-|. T Consensus 43 ~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~~~~~~~l~~l---L~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~~ 119 (403) T protein:vir:10 43 EILNRTANMVIDSAAECSYTVGDKYNIVTYANGVKTKTLDTL---LNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDGT 119 (403) T ss_pred HHHHHHHHHHHHHHhhCceeEeecccccccccccccchHHHH---HhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeCc Confidence 00110 11223444433444432211 0001112 12224545555555666665554333455333333 Q ss_pred hhh--hhhhcccch--hhhhhcCCCccEEEEeecceeeee---------cccccccc-chhhHHHHHHHHHh--hhhh-h Q lcl|NC_001629. 71 FKY--YAQRVNADQ--FNILVREPNRRQVTIRTSDYEMLL---------NPFYGANP-QRFGVMFGMASNGI--GRRL-D 133 (279) Q Consensus 71 ~~~--y~~~v~~d~--fN~~v~~~~~~~vtlP~SDV~iie---------NPf~~V~~-ee~t~MLd~aLnaI--~~KL-e 133 (279) .-| .|.+|.++. ........-...++.|..+|.-|- ++.++..+ +.+-.-++.+..+. .++. . T Consensus 120 ~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ 199 (403) T protein:vir:10 120 SLYHVPAALMQVEADANKFIKKFIFNNQINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLD 199 (403) T ss_pred eeEeecCcceEEEEcCCceEEEEEecCceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 222 123333321 111001111234667777776554 22222211 12222244443333 2333 4 Q ss_pred ccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccccc---HHHHHHHHHHHHhhcC Q lcl|NC_001629. 134 SQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL---QNDANLAIEIALSEYG 210 (279) Q Consensus 134 qqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~---~~die~lkS~LySq~G 210 (279) +.+...+.++.|-.. +++-+++.+++++++..-+++-+++.++++|-+++++....+... .+...+.+...+..|| T Consensus 200 ng~~~~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fg 278 (403) T protein:vir:10 200 NGTVIGLILETDEIL-NKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFG 278 (403) T ss_pred ccCCcceEEEeCCCC-CHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhC Confidence 455578889988764 455567777777777655555577999999999999986554332 4445677888999999 Q ss_pred Ccccccc-cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 211 MPRELLY-GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 211 InekIL~-GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) ||..+|. |+.+ +++..+|+..+|.|++++.+.+|.+. . |-.+.-..+ .-..+-.| T Consensus 279 VPp~~lg~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~~------L------~~~~~~d~~--~~~~l~~D 336 (403) T protein:vir:10 279 VPQVLLDGGNNANIRPNIELFYYMTIIPMLNKLTSSLTFF------F------GYKITPNTK--EVAALTPD 336 (403) T ss_pred CCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh------c------Cceeeeccc--hhhhcccC Confidence 9999994 4333 57889999999999999987755432 1 111111110 00112223 No 55 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.23 E-value=1.7e-08 Score=63.23 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=139.2 Q ss_pred Cc---cc-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhcccee-eeeehhhh--- Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEV-YRVWYGGF--- 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~--- 71 (279) |. .+ -++.-|++++=..|.+.+|-..+|+-. -|.+.+-.+-++.+... .+.|.-. +-++-+.. T Consensus 40 l~~~~V~~~v~~ia~~ia~~p~~~~~~~~~~l~~~--------PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 111 (397) T protein:vir:38 40 LKNSDIFSLIMQLSGDLAMVRYTSESDRSQSIISN--------PSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDL 111 (397) T ss_pred hccHHHHHHHHHHHHHHhhCcccccccHHHHHHhc--------CCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEE Confidence 00 00 123345555544555555543333211 24444444444555543 3345432 11221110 Q ss_pred hhh---hhhcccchh---hhh------hcCCCccEEEEeecceeeeeccc-----ccccc-chhhHHHHHHHHH--hhhh Q lcl|NC_001629. 72 KYY---AQRVNADQF---NIL------VREPNRRQVTIRTSDYEMLLNPF-----YGANP-QRFGVMFGMASNG--IGRR 131 (279) Q Consensus 72 ~~y---~~~v~~d~f---N~~------v~~~~~~~vtlP~SDV~iieNPf-----~~V~~-ee~t~MLd~aLna--I~~K 131 (279) .+| |.+|.+... +.. ....+...+++|.+||.-+-.|- ++..+ +.....++.+.++ ...+ T Consensus 112 ~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~ 191 (397) T protein:vir:38 112 SWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLK 191 (397) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEeccccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 111 222221110 000 01223445789999998775543 33222 1222223333333 2333 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~ 209 (279) . .+.+..++.++++-... ++-+++.+.+.+.+... .+-+|+.+++.|-+++++...-..+ ..+-.++.+.+.+..| T Consensus 192 ~f~ng~~~~~il~~~~~~~-~e~~~~~~~~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~af 269 (397) T protein:vir:38 192 ALKQSVTASAVLTIQKGGL-LDAETRIARSKEISKQI-HNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVY 269 (397) T ss_pred HHhccCCccEEEEeCCCCC-HHHHHHHHHHHHHHhcc-cccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHh Confidence 3 55667899999987744 45577778877776655 4578999999999999997542222 2445678899999999 Q ss_pred CCccccccccc----ccceehhhhhhhHHHHHHHhccccc---c-hhhhhhhhhe------------ecccCcccccccc Q lcl|NC_001629. 210 GMPRELLYGQS----NEVTIIAFAIQKVLPLLKQHDKNIV---F-NQENFVAYIS------------TTAKGGKIESKSS 269 (279) Q Consensus 210 GInekIL~Gta----TeeqkiAyy~stV~PLLkQyek~lv---f-~~E~fv~y~t------------tta~gg~~~s~~~ 269 (279) |||..+|-|+. +-+|..+||..+|.|++++++.+|- + .-|+...+.. +=.++|-+ +..- T Consensus 270 gVp~~~lg~~~~~~~~~e~~~~~~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~-t~nE 348 (397) T protein:vir:38 270 GVPDSYLNGQGDQQSSITQISGQYAKSLNRYVQAIVGELNDKLHANISANIRFAIDAMGDQYASTISSSVKGGTI-AGNQ 348 (397) T ss_pred CCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhcccccccccCCHHHHHHHHHHHHhCCCc-CHHH Confidence 99999997643 3477889999999999999876542 2 2233333321 11122221 1111 Q ss_pred cc---cCCCC-CCC Q lcl|NC_001629. 270 SR---DSEPL-GND 279 (279) Q Consensus 270 ~~---~~~~~-~~~ 279 (279) .| .-+|+ |.| T Consensus 349 ~R~~lg~~p~~~~d 362 (397) T protein:vir:38 349 ARFILQNSGYLAKD 362 (397) T ss_pred HHHHhCCCCCCCCc Confidence 11 11121 111 No 56 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=98.23 E-value=6.4e-08 Score=60.02 Aligned_cols=274 Identities=11% Similarity=0.043 Sum_probs=134.4 Q ss_pred Ccc-----------cc-cchhhccce---eeeeeecC-cc---hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hcc Q lcl|NC_001629. 1 MSL-----------FN-LSRRAEDVS---FSTFTVQD-PT---TDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQG 60 (279) Q Consensus 1 ~~~-----------~~-~~~~~~~~~---~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 60 (279) +++ |. .+..|++|+ |..|...+ .. .|-.+-.|+ .=-|-..+-..-++.+..+. +.| T Consensus 39 ~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~~~~~~~~~~~~~Ll----~~PN~~~t~~~F~~~lv~~lll~G 114 (518) T protein:vir:10 39 FSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTETEESDTGYAKLL----ADPCEYLDPFAFWEWVASTLDIYG 114 (518) T ss_pred cchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCCCceeccchHHHHHH----cCCCCCCCHHHHHHHHHHHHhhcC Confidence 111 11 223344444 22222111 00 111111111 12344444444455555443 445 Q ss_pred ceeeeeehhh----hhhh---hhhcccch--hh------hhhcCC-CccEEEEeecceeeeeccc-----cccccc-hhh Q lcl|NC_001629. 61 QEVYRVWYGG----FKYY---AQRVNADQ--FN------ILVREP-NRRQVTIRTSDYEMLLNPF-----YGANPQ-RFG 118 (279) Q Consensus 61 ~~~~~~~~~~----~~~y---~~~v~~d~--fN------~~v~~~-~~~~vtlP~SDV~iieNPf-----~~V~~e-e~t 118 (279) .-...+...+ .++| |.+|.+.. .+ ..+..+ ..+.+++|-+||.-|-+|- ++..+= ... T Consensus 115 nay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~ 194 (518) T protein:vir:10 115 ETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLK 194 (518) T ss_pred CeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHH Confidence 5433333222 1233 24454321 11 001112 3356889999998885442 222211 111 Q ss_pred HHHH--HHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-ccc Q lcl|NC_001629. 119 VMFG--MASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSL 194 (279) Q Consensus 119 ~MLd--~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~ 194 (279) ..|+ .+......++ .+.+...+.++.+-.. +++-+++++++.+++..-+++-+++.+++.|.++++|.-.-. ... T Consensus 195 ~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l-s~e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~ 273 (518) T protein:vir:10 195 STIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL-SEAAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQF 273 (518) T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC-CHHHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHH Confidence 1122 2223334444 5556689999998664 456667888888887766666788999999999999963110 001 Q ss_pred HHHHHHHHHHHHhhcCCcccccc----cccc--cceehhhhhhhHHHHHHHhcccccc---hh---hhhhhh-------- Q lcl|NC_001629. 195 QNDANLAIEIALSEYGMPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVF---NQ---ENFVAY-------- 254 (279) Q Consensus 195 ~~die~lkS~LySq~GInekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf---~~---E~fv~y-------- 254 (279) .+-..+.+.+.+..||||..++- ++++ |++.++|+..+|.|++++.|.+|.. .+ ..+++| T Consensus 274 le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~ 353 (518) T protein:vir:10 274 IEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQP 353 (518) T ss_pred HHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhcc Confidence 22234566888999999998882 3333 7788999999999999998764322 00 001111 Q ss_pred --------heecccCccc--ccccccccCCCC---CCC Q lcl|NC_001629. 255 --------ISTTAKGGKI--ESKSSSRDSEPL---GND 279 (279) Q Consensus 255 --------~ttta~gg~~--~s~~~~~~~~~~---~~~ 279 (279) +++--+.|-+ |-.-..-+-+|+ |.| T Consensus 354 D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD 391 (518) T protein:vir:10 354 DWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKAD 391 (518) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC Confidence 1111111211 111111122333 122 No 57 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=98.19 E-value=4.8e-08 Score=60.70 Aligned_cols=268 Identities=13% Similarity=0.149 Sum_probs=134.7 Q ss_pred Cc---cc-ccchhhccceeeeeeecC-------cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhcccee-eeee Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQD-------PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEV-YRVW 67 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 67 (279) |. +| -+...|++|+=-.|.|-. +..+-.+-.++ . -.+-..+-..-++.+..+ .+.|... +-.| T Consensus 50 l~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~~l---n-~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~ 125 (457) T protein:vir:13 50 LQVSAVFASVRLLSETIATLPLSTYSKRGGSRKEIVTPEWLDYP---N-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRW 125 (457) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEecCCcccccccchHHHhc---c-ccCCCCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 11 01 122334444433333221 11111111111 1 111123333445555443 3456542 2334 Q ss_pred hhhh--h-hh--hhhcccc-------------hhhhhhcCCCccEEEEeecceeeeecccc-----ccccc-hhhHHHHH Q lcl|NC_001629. 68 YGGF--K-YY--AQRVNAD-------------QFNILVREPNRRQVTIRTSDYEMLLNPFY-----GANPQ-RFGVMFGM 123 (279) Q Consensus 68 ~~~~--~-~y--~~~v~~d-------------~fN~~v~~~~~~~vtlP~SDV~iieNPf~-----~V~~e-e~t~MLd~ 123 (279) -+|- + |+ |.+|.+. .|..-.+-.+.....+|-+||.-+-.|-. +..+- .....|+. T Consensus 126 ~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~ 205 (457) T protein:vir:13 126 QGPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGL 205 (457) T ss_pred cCCcEEEEEEEccCceEEEEecCCCccceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHH Confidence 4432 1 11 3444332 12221111222334567788877765532 22211 22222443 Q ss_pred HHHH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHH Q lcl|NC_001629. 124 ASNG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDAN 199 (279) Q Consensus 124 aLna--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die 199 (279) +.++ ...++ .+.+...+.++++-.. +++-+++++++++++..-+++-+|+.+++.|-++++|.-.-.-+ ..+-.+ T Consensus 206 ~~~~~~~~~~~f~ng~~p~gil~~~~~l-s~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 284 (457) T protein:vir:13 206 ALAAQKYGSKFFANGAMPGAVVEVPGTM-SEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQ 284 (457) T ss_pred HHHHHHHHHHHHhcCCCcceEEEcCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHH Confidence 3333 33444 5566688899998764 56667888888888776666678999999999999996421111 112233 Q ss_pred HHHHHHHhhcCCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc-cccc--- Q lcl|NC_001629. 200 LAIEIALSEYGMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK-IESK--- 267 (279) Q Consensus 200 ~lkS~LySq~GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~-~~s~--- 267 (279) +.+.+.+..||||..+|- |+..+++.++|+..+|.|+++++|- |++++.++...+.|. ++-. T Consensus 285 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~------~ln~~L~~~~~~~~~~i~fd~~~ 358 (457) T protein:vir:13 285 FQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEA------GFNRLLFAETADRFRFVKFNLDE 358 (457) T ss_pred HHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcCccccCceeEEeechh Confidence 677889999999998871 1234778889999999999999876 444444443333222 1110 Q ss_pred ------------------------cccc---cCCCCCC---C Q lcl|NC_001629. 268 ------------------------SSSR---DSEPLGN---D 279 (279) Q Consensus 268 ------------------------~~~~---~~~~~~~---~ 279 (279) ...| +-+|+.. | T Consensus 359 l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d 400 (457) T protein:vir:13 359 IKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGE 400 (457) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccc Confidence 0011 2223321 1 No 58 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=98.17 E-value=6.4e-08 Score=60.04 Aligned_cols=268 Identities=15% Similarity=0.189 Sum_probs=133.2 Q ss_pred Ccc----cccchhhccceeeeeee----cCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccce-eeeeehhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTV----QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQE-VYRVWYGG 70 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 70 (279) |.. --++..|++++=..|.| .|......=..+.=|+..--|...+-..-++.+..+ .|.|.- ++.++-+| T Consensus 58 l~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g 137 (432) T protein:vir:10 58 MRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDG 137 (432) T ss_pred hcchHHHHHHHHHHHhhhhCceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCC Confidence 100 11233444444333332 111000000111222223345444444445555433 455653 22334344 Q ss_pred h--hh---hhhhcccc--hhhhh---hcCCCccEEEEeecceeeeecc----cccccc-chhhHHHHHHHHH--hhhhh- Q lcl|NC_001629. 71 F--KY---YAQRVNAD--QFNIL---VREPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGMASNG--IGRRL- 132 (279) Q Consensus 71 ~--~~---y~~~v~~d--~fN~~---v~~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~aLna--I~~KL- 132 (279) . +. -|.+|.+. ..+.. +...+.+.+++|-.||.-+-++ +++..+ +.+...++.++.+ ..+++ T Consensus 138 ~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f 217 (432) T protein:vir:10 138 RIESLQYLANDRLTITTDTKGNTAYRYRRTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAF 217 (432) T ss_pred cEEEEEEEcCCceEEEEcCCCcEEEEEEecCceEEEEcCccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 11 23444332 22221 2334556788999999877543 333221 1222334443333 33444 Q ss_pred hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhhcCC Q lcl|NC_001629. 133 DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSEYGM 211 (279) Q Consensus 133 eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq~GI 211 (279) .+.+...+.++.|-.. +++-+++.+ +..+-+.+-+|+.++++|.++++|.-.-.- ...+-..+.+.+.+..||| T Consensus 218 ~ng~~~~gil~~~~~l-~~e~~~~~~----~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgV 292 (432) T protein:vir:10 218 RNGQLQSVYYQIDRFL-TDDQYDSFA----KKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGV 292 (432) T ss_pred hcCCCcceEEecCCCC-CHHHHHHHH----HHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCC Confidence 5556688889988653 333344444 333445566899999999999999632111 1122335678889999999 Q ss_pred cccccc----c-----ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc---------------------- Q lcl|NC_001629. 212 PRELLY----G-----QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK---------------------- 260 (279) Q Consensus 212 nekIL~----G-----taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~---------------------- 260 (279) |..+|- | +..|++.++|+..+|.|+++++|.+|- ++.++...+ T Consensus 293 Pp~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln------~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~ 366 (432) T protein:vir:10 293 PPSMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLRRIEQSIA------LNLLSPAERRRYFADFDTSALLRADSAARSS 366 (432) T ss_pred CHHHcCCccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH------hhhcCccccCceEEEeechhhhccCHHHHHH Confidence 999982 2 234788999999999999999877543 223222211 Q ss_pred -------Cccc--ccccccccCCCCCCC Q lcl|NC_001629. 261 -------GGKI--ESKSSSRDSEPLGND 279 (279) Q Consensus 261 -------gg~~--~s~~~~~~~~~~~~~ 279 (279) +|-+ |-.-.--+-+|++.+ T Consensus 367 ~~~~~~~~G~~T~NE~R~~~glppi~g~ 394 (432) T protein:vir:10 367 YYSQLVNNGLMTRDEAREIEGLPKLGGN 394 (432) T ss_pred HHHHHHhCCCCCHHHHHHHhCCCCCCCC Confidence 2211 111111233444322 No 59 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=98.17 E-value=1e-07 Score=58.96 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=128.6 Q ss_pred Ccc------------------------cccchhhccceeeeeee---cCcchhHHHHHHHHHHHHhhcccchhhhhhhhh Q lcl|NC_001629. 1 MSL------------------------FNLSRRAEDVSFSTFTV---QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDL 53 (279) Q Consensus 1 ~~~------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (279) ... --+++.|.+++=..|.+ -+-.....-..+.=++-.=-|...+-.+-++.+ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~ 102 (406) T protein:vir:95 23 VGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNI 102 (406) T ss_pred hhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHH Confidence 000 01222344444333333 110000000011111222234444444555555 Q ss_pred hhhhh-ccce-ee--eeehhh---hhhh---hhhcccchhh--hhhcCCCccEEEEeecceeeee-c-----cccccccc Q lcl|NC_001629. 54 FFWAL-QGQE-VY--RVWYGG---FKYY---AQRVNADQFN--ILVREPNRRQVTIRTSDYEMLL-N-----PFYGANPQ 115 (279) Q Consensus 54 ~~~~~-~~~~-~~--~~~~~~---~~~y---~~~v~~d~fN--~~v~~~~~~~vtlP~SDV~iie-N-----Pf~~V~~e 115 (279) ..+.+ .|.- .| .++-+. .++| |..|.+..-+ .-+.-+ ..++|.+||.-+- + ++++..+= T Consensus 103 ~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~~~~~~---~~~~~~~evih~~~~~~~~~~~~G~s~i 179 (406) T protein:vir:95 103 VYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGYQVLYG---GQTFNYDEVLHFIYNPDPERPYIGRGYR 179 (406) T ss_pred HHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeEEEEec---cEEEchhHEEEeeccCCCCCCccccCHH Confidence 55543 3431 12 222211 1222 2223222110 000000 2367888887664 2 34443321 Q ss_pred -hhhHH--HHHHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeecc-CCceeEEccCc- Q lcl|NC_001629. 116 -RFGVM--FGMASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIG-SDDDIKQIQPD- 189 (279) Q Consensus 116 -e~t~M--Ld~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid-~geei~QLq~D- 189 (279) .+... +..+......+. .+.+...+.++++-... ++-+++.++++.++.+-+.+-+++.++. +++++.++.+- T Consensus 180 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~-~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~ 258 (406) T protein:vir:95 180 VVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATA-ELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLS 258 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC-HHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCC Confidence 22222 222333333444 55566888899987744 5556777778777776555557787775 55677665431 Q ss_pred -cccccHHHHHHHHHHHHhhcCCccccc-ccccccceehhhhhhhHHHHHHHhcccccc----hhhhhhhhheecc---- Q lcl|NC_001629. 190 -YSGSLQNDANLAIEIALSEYGMPRELL-YGQSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQENFVAYISTTA---- 259 (279) Q Consensus 190 -YSts~~~die~lkS~LySq~GInekIL-~GtaTeeqkiAyy~stV~PLLkQyek~lvf----~~E~fv~y~ttta---- 259 (279) =+....+-.++.+.+.+..||||..+| .++.++.|..+|+..+|.|++++++.+|.. ..+.+++|=.+-- T Consensus 259 ~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d 338 (406) T protein:vir:95 259 LKDIAINEAVELDKRTVAGMFGVPAFLLGIGEFNRDEYNNFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYD 338 (406) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCC Confidence 112223445777899999999999988 578899999999999999999998864432 2222222211100 Q ss_pred ------------cCcccc--cccccccCCCCCC-C Q lcl|NC_001629. 260 ------------KGGKIE--SKSSSRDSEPLGN-D 279 (279) Q Consensus 260 ------------~gg~~~--s~~~~~~~~~~~~-~ 279 (279) +.|-+. -.-.--+-+|+.+ | T Consensus 339 ~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd 373 (406) T protein:vir:95 339 LKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLS 373 (406) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 011100 0000001111110 1 No 60 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=98.16 E-value=6.2e-08 Score=60.10 Aligned_cols=272 Identities=16% Similarity=0.132 Sum_probs=136.2 Q ss_pred Ccc----cccchhhccceeeeeeecCcchhHHH--HHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeeh---hh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQDPTTDLLL--GKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWY---GG 70 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~ 70 (279) |.. --.+..|++|+=..+.|...+.|-.. -.+.-|+.---|-..+-..-++.+..+. |.|.-...++. || T Consensus 38 l~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~ 117 (417) T protein:vir:38 38 LRNSDVLTAVSIVSGDVSRFPLVITDSSTDEVIDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITN 117 (417) T ss_pred cccHHHHHHHHHHHHhhccCeeEEEEcCCcceeccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC Confidence 111 11234455555444544221111100 0111222223455555444555555543 44554333332 33 Q ss_pred h--h---hhhhhcccchhh---hh--hcC-CCccEEEEeecceeeeec----cccccccc-hhhHH--HHHHHHHhhhhh Q lcl|NC_001629. 71 F--K---YYAQRVNADQFN---IL--VRE-PNRRQVTIRTSDYEMLLN----PFYGANPQ-RFGVM--FGMASNGIGRRL 132 (279) Q Consensus 71 ~--~---~y~~~v~~d~fN---~~--v~~-~~~~~vtlP~SDV~iieN----Pf~~V~~e-e~t~M--Ld~aLnaI~~KL 132 (279) . . +-|.+|.+...+ .. +.. ......++|.+||.-|-. |++++.+= .+..- +..+...-..++ T Consensus 118 ~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~dviH~r~~~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 197 (417) T protein:vir:38 118 EPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSMQKVCGFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKF 197 (417) T ss_pred EEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcEEEEecCcceEEecCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH Confidence 1 1 225566553322 11 111 123356688888876653 44444321 11111 223333333444 Q ss_pred -hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH------HHHH Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA------IEIA 205 (279) Q Consensus 133 -eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l------kS~L 205 (279) .+-+..++.++.+-.. .++-+++.+++.+++..-. +-+|+.+++.|.++++|.- +.+|++++ +.+. T Consensus 198 f~ng~~p~~il~~~~~l-~~e~~~~~~~~~~~~~~g~-n~g~~~vl~~g~~~~~l~~-----~~~d~q~le~~~~~~~~I 270 (417) T protein:vir:38 198 FKSGLKGSIIKAKESRL-SAEARQKIREDFERAQAGA-DAGSPIIVDATMDYQPLEV-----DTNVLNLINSNNYSTAQI 270 (417) T ss_pred HhccCCCcEEEEeCCCC-CHHHHHHHHHHHHHHhccc-ccCCceeccCCceEEEccC-----CHHHHHHHHHHHhhHHHH Confidence 3334467777877664 4555788888888776443 5588999999999999852 23455543 5567 Q ss_pred HhhcCCcccccccccc----cceehhhhhhhHHHHHHHhcccccc---h----hhhhhhhh------------eecccCc Q lcl|NC_001629. 206 LSEYGMPRELLYGQSN----EVTIIAFAIQKVLPLLKQHDKNIVF---N----QENFVAYI------------STTAKGG 262 (279) Q Consensus 206 ySq~GInekIL~GtaT----eeqkiAyy~stV~PLLkQyek~lvf---~----~E~fv~y~------------ttta~gg 262 (279) +..||||..+|-+++| +++..+|+..+|.|++++.+.+|-. . ...+++|= .|-...| T Consensus 271 a~~fgVPp~~lg~~~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~~~~~~~~~~~G 350 (417) T protein:vir:38 271 AKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLPIADVNTAVNGG 350 (417) T ss_pred HHHhCCCHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhcccceEEechhhhhHHHHHHHHHHHhCC Confidence 7899999999954444 8899999999999999997754321 1 11112221 0111112 Q ss_pred cc--ccccccccCCCCCC---C Q lcl|NC_001629. 263 KI--ESKSSSRDSEPLGN---D 279 (279) Q Consensus 263 ~~--~s~~~~~~~~~~~~---~ 279 (279) -+ |-.-...+-+|+.. | T Consensus 351 ~~T~NE~R~~~gl~pi~~g~~d 372 (417) T protein:vir:38 351 LWTGNEGRAELGKKPLKDPNMD 372 (417) T ss_pred CcCHHHHHHHhCCCCCCCCCCC Confidence 11 11111122334421 1 No 61 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=98.16 E-value=1.3e-07 Score=58.29 Aligned_cols=268 Identities=15% Similarity=0.196 Sum_probs=130.7 Q ss_pred Ccc----cccchhhccceeeeeeec----CcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccce-eeeeehhh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ----DPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQE-VYRVWYGG 70 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 70 (279) |.. --++..|++++=..|.|. |-.....=..+.=|+..--|...+-..-++.+..+ .+.|.- ++.++-+| T Consensus 58 ~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g 137 (432) T protein:vir:97 58 MRLDAVAACVKLVSQAVAAMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDG 137 (432) T ss_pred hcchHHHHHHHHHHHhhccCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCC Confidence 000 012223344432222221 10000000011112222234444444444544433 344443 23334333 Q ss_pred h--h---hhhhhccc--chhhhh---hcCCCccEEEEeecceeeeec----ccccccc-chhhHHHHHHHHHh--hhhh- Q lcl|NC_001629. 71 F--K---YYAQRVNA--DQFNIL---VREPNRRQVTIRTSDYEMLLN----PFYGANP-QRFGVMFGMASNGI--GRRL- 132 (279) Q Consensus 71 ~--~---~y~~~v~~--d~fN~~---v~~~~~~~vtlP~SDV~iieN----Pf~~V~~-ee~t~MLd~aLnaI--~~KL- 132 (279) . + --|.+|.+ +..+.. +...+.+.+++|-+||.-+-+ ++++..+ +.....++.++++- .+++ T Consensus 138 ~~~~L~~l~p~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f 217 (432) T protein:vir:97 138 RIESLQYLANDRLTITTDTKGNTAYRYRRTDGQMIDIPRQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAF 217 (432) T ss_pred cEEEEEEEcCcceEEEEcCCCcEEEEEEecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 1 11333332 222221 123455678899999987743 3444332 23333354444443 3344 Q ss_pred hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhcCC Q lcl|NC_001629. 133 DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGM 211 (279) Q Consensus 133 eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~GI 211 (279) .+.+..++.++.|-... ++-++ ++++..+-+.+-+|+.+++.|.++++|.-.-..+ ..+-..+.+++.+..||| T Consensus 218 ~ng~~~~gil~~~~~l~-~e~~~----~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgV 292 (432) T protein:vir:97 218 RNGQLQSVYYQIDRFLT-DDQYD----SFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGV 292 (432) T ss_pred hccCCcceeEecCCCCC-HHHHH----HHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCC Confidence 55556788899886643 33333 3444444455668999999999999996321111 122245678899999999 Q ss_pred cccccc----c-----ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc---------------------- Q lcl|NC_001629. 212 PRELLY----G-----QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK---------------------- 260 (279) Q Consensus 212 nekIL~----G-----taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~---------------------- 260 (279) |..+|- | +..|++.++|+..+|.|++++.|.+|- ++.++...+ T Consensus 293 Pp~~lg~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln------~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~ 366 (432) T protein:vir:97 293 PPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIA------LNLLTPAERRRYFADFDTSALLRADSAARSS 366 (432) T ss_pred CHHHcCCcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHh------hhccCccccCceEEEeechhhhccCHHHHHH Confidence 998882 1 334788999999999999999877443 233322221 Q ss_pred -------Cccc--ccccccccCCCCCCC Q lcl|NC_001629. 261 -------GGKI--ESKSSSRDSEPLGND 279 (279) Q Consensus 261 -------gg~~--~s~~~~~~~~~~~~~ 279 (279) +|-+ |-.-..-+-+|++.+ T Consensus 367 ~~~~~~~~G~~T~NE~R~~~glpp~~g~ 394 (432) T protein:vir:97 367 YYSQLVNNGLMTRDEAREIEGLPKLGGN 394 (432) T ss_pred HHHHHHhCCCCCHHHHHHHhCCCCCCCC Confidence 2211 111111133444322 No 62 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=98.16 E-value=1.3e-07 Score=58.41 Aligned_cols=268 Identities=11% Similarity=0.010 Sum_probs=132.2 Q ss_pred Ccc-----------cc-cchhhccceeeeeee---c-Ccc---hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hcc Q lcl|NC_001629. 1 MSL-----------FN-LSRRAEDVSFSTFTV---Q-DPT---TDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQG 60 (279) Q Consensus 1 ~~~-----------~~-~~~~~~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 60 (279) +++ |. ++.-|++++=..|.+ . +.. .|-.+-.|+ .=-|-.-+-..-++.+..+. +.| T Consensus 39 ~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~~~~~~~~~~~Ll----~~PN~~~t~~~F~~~lv~~lll~G 114 (518) T protein:vir:78 39 FSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTETEEHDTGYAKLL----ADPCEYLDPFAFWEWVASTLDIYG 114 (518) T ss_pred cchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCccccccchHHHHHH----hCCCCCCCHHHHHHHHHHHHhhcC Confidence 111 11 233344444333322 1 111 111111121 12444444444455555444 345 Q ss_pred ceeeeeehhh----hhhh---hhhcccch--hhh------hhcCC-CccEEEEeecceeeeeccccc---cccchhhH-- Q lcl|NC_001629. 61 QEVYRVWYGG----FKYY---AQRVNADQ--FNI------LVREP-NRRQVTIRTSDYEMLLNPFYG---ANPQRFGV-- 119 (279) Q Consensus 61 ~~~~~~~~~~----~~~y---~~~v~~d~--fN~------~v~~~-~~~~vtlP~SDV~iieNPf~~---V~~ee~t~-- 119 (279) .-...+...+ .++| |.+|.+.. .+. -+..+ ..+.+++|-+||..|-.|-.. .-..++.. T Consensus 115 nay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~ 194 (518) T protein:vir:78 115 ETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLK 194 (518) T ss_pred CeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHH Confidence 4332222221 1233 24444321 110 01112 235688999999888544211 00112221 Q ss_pred -HHHH--HHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcc-cccc Q lcl|NC_001629. 120 -MFGM--ASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDY-SGSL 194 (279) Q Consensus 120 -MLd~--aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DY-Sts~ 194 (279) .|+. +...-..++ .+.+...+.++.+-.. +++-+++.+++.+++..-+.+-+++.+++.|-++++|.-.- +... T Consensus 195 ~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~l-s~e~~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~ 273 (518) T protein:vir:78 195 STIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL-SPEAQQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQF 273 (518) T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC-CHHHHHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHH Confidence 1222 222233343 4556688899988664 45566778888877776666668899999999999996311 0111 Q ss_pred HHHHHHHHHHHHhhcCCcccccc----cccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhheeccc-------- Q lcl|NC_001629. 195 QNDANLAIEIALSEYGMPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAK-------- 260 (279) Q Consensus 195 ~~die~lkS~LySq~GInekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~-------- 260 (279) .+-..+.+.+.+..||||..++- ++++ |++.++|+..+|.|++++++.+|. .+.++.-.+ T Consensus 274 le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f~~~tL~P~~~~ie~eln------~~L~~~~~~~~~~~fd~ 347 (518) T protein:vir:78 274 IEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMD------KYVGQYWVRKNRMKFDI 347 (518) T ss_pred HHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HhhcccccCcceEEeec Confidence 22233556889999999988772 3333 788899999999999999776332 222221111 Q ss_pred --------------------Ccc--cccccccccCCCCC---CC Q lcl|NC_001629. 261 --------------------GGK--IESKSSSRDSEPLG---ND 279 (279) Q Consensus 261 --------------------gg~--~~s~~~~~~~~~~~---~~ 279 (279) .|- +|-.-..-+-+|+. .| T Consensus 348 ~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD 391 (518) T protein:vir:78 348 DDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKAD 391 (518) T ss_pred hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 111 11111112223331 12 No 63 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=98.15 E-value=4.4e-07 Score=55.42 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=133.5 Q ss_pred Cccccc---------------chhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee Q lcl|NC_001629. 1 MSLFNL---------------SRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY 64 (279) Q Consensus 1 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (279) .+.+.. ..-|++++=..+.+-..+ +..=..+.-|...=-|-..+-..-++.+..+ .+.|.-.. T Consensus 35 ~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 113 (409) T protein:vir:96 35 KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 113 (409) T ss_pred ccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecc-cccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEE Confidence 111111 123444443333331111 0000112222222245445555555665544 45565433 Q ss_pred eeehhh----hhh---hhhhcccchhh---h---hhcCCCccEEEEeecceeeeecc--c---ccccc-chhhHHHHHHH Q lcl|NC_001629. 65 RVWYGG----FKY---YAQRVNADQFN---I---LVREPNRRQVTIRTSDYEMLLNP--F---YGANP-QRFGVMFGMAS 125 (279) Q Consensus 65 ~~~~~~----~~~---y~~~v~~d~fN---~---~v~~~~~~~vtlP~SDV~iieNP--f---~~V~~-ee~t~MLd~aL 125 (279) .+-.++ .+. .|..|.+..-+ . -+..++.+++++|..||.-|-.| . ++..+ ..+...++.+. T Consensus 114 ~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~ 193 (409) T protein:vir:96 114 LIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN 193 (409) T ss_pred EEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHH Confidence 322221 122 34555543211 1 12455667889999999887543 2 22211 12223344443 Q ss_pred HHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHH Q lcl|NC_001629. 126 NGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIE 203 (279) Q Consensus 126 naI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS 203 (279) .+-...+...+. ..+-++.+-.. +++-+++.+++.+++. ++-+|+.+++.|.++++|...-..+ ..+-..+.+. T Consensus 194 ~~~~~~~~~~~~~~~~i~~~~~~l-~~e~~~~~~~~~~~~~---~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 269 (409) T protein:vir:96 194 AVRTFNLTEMQKPDSFMLKYGSNV-STEKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRE 269 (409) T ss_pred HHHHHHHHhcCCCceeEEecCCCC-CHHHHHHHHHHHHHHh---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 333333433333 33446666554 4445667777776654 3458999999999999996432211 1222334678 Q ss_pred HHHhhcCCccccccccc--c----cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccC--ccccccccc--c-- Q lcl|NC_001629. 204 IALSEYGMPRELLYGQS--N----EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKG--GKIESKSSS--R-- 271 (279) Q Consensus 204 ~LySq~GInekIL~Gta--T----eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~g--g~~~s~~~~--~-- 271 (279) +.+..||||..+|-+.. | |++.++|+..+|.|++++.|. |++++.++...++ =.++-..+. | T Consensus 270 ~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~------~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d 343 (409) T protein:vir:96 270 RVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE------EFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) T ss_pred HHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCcccccCcceEEeechhhhccC Confidence 89999999999996533 2 888999999999999999876 4555555543321 112211000 0 Q ss_pred ------------cCCCC-CCC Q lcl|NC_001629. 272 ------------DSEPL-GND 279 (279) Q Consensus 272 ------------~~~~~-~~~ 279 (279) .+.-+ .|+ T Consensus 344 ~~~~~e~~~~~~~~G~~T~NE 364 (409) T protein:vir:96 344 SATQAEVYFKAVRSGYYTIND 364 (409) T ss_pred HHHHHHHHHHHHhCCCCCHHH Confidence 00000 011 No 64 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=98.14 E-value=1.8e-07 Score=57.55 Aligned_cols=272 Identities=14% Similarity=0.121 Sum_probs=134.2 Q ss_pred Cccc-------------------------ccchhhccceeeeeeec---CcchhHHH-HHHHHHHHHhhcccchhhhhhh Q lcl|NC_001629. 1 MSLF-------------------------NLSRRAEDVSFSTFTVQ---DPTTDLLL-GKLLGLVSYFDNVDYSEASKLE 51 (279) Q Consensus 1 ~~~~-------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 51 (279) +..+ -.+..|++++=..|.|- +-...... -.+.-|+..=-|-.-+-..-++ T Consensus 23 ~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~ 102 (414) T protein:vir:44 23 ADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWE 102 (414) T ss_pred hHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHH Confidence 0000 11223444443323221 10000000 0011111122344444444455 Q ss_pred hhhhhh-hccceeeeeehhh--h-h-hh--hhhccc--chhhh---hhcCCCccEEEEeecceeeeecc----ccccccc Q lcl|NC_001629. 52 DLFFWA-LQGQEVYRVWYGG--F-K-YY--AQRVNA--DQFNI---LVREPNRRQVTIRTSDYEMLLNP----FYGANPQ 115 (279) Q Consensus 52 ~~~~~~-~~~~~~~~~~~~~--~-~-~y--~~~v~~--d~fN~---~v~~~~~~~vtlP~SDV~iieNP----f~~V~~e 115 (279) .+..+. +.|.-...++.++ - + |+ |..|.+ +.... -+..++-...++|-+||..|-+| ++++.+= T Consensus 103 ~~~~~~ll~Gna~~~i~~~~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~d~~~G~s~i 182 (414) T protein:vir:44 103 LVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVPKLNSSWEPVYQVTFPDGSTDVLSQEDIWHVRTLTLDGLVGLNPI 182 (414) T ss_pred HHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCceEEEEECCCCcEEEEEEecCceEEEEccccEEEecCCCCCCcccccHH Confidence 555443 3454432233221 1 0 11 233321 11111 12334445678999999988644 3433322 Q ss_pred -hhhHHHHHHHHH--hhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcc- Q lcl|NC_001629. 116 -RFGVMFGMASNG--IGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDY- 190 (279) Q Consensus 116 -e~t~MLd~aLna--I~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DY- 190 (279) .....++.++.+ -..++ .+.+..++.++++-.. +++-+++.+++++++..-+.+-+++.+++.|.++++|...- T Consensus 183 ~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~ 261 (414) T protein:vir:44 183 AYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTL-SDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAE 261 (414) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChH Confidence 222223333333 33444 4455578888988764 45667888888887775555567899999999999986321 Q ss_pred ccccHHHHHHHHHHHHhhcCCccccccc--ccc----cceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcc- Q lcl|NC_001629. 191 SGSLQNDANLAIEIALSEYGMPRELLYG--QSN----EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGK- 263 (279) Q Consensus 191 Sts~~~die~lkS~LySq~GInekIL~G--taT----eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~- 263 (279) +....+-.++.+.+.+..||||..+|-+ ++| |++.++|+..+|.|+++++|.+| +.+.++...++|. T Consensus 262 d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l~P~~~~ie~~l------n~~L~~~~~~~~~~ 335 (414) T protein:vir:44 262 DSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRI------NTGLVRKSKQGVFY 335 (414) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------HhhcCCccccCceE Confidence 1111223446677888999999998842 122 78889999999999999977633 3333333333221 Q ss_pred c------------------------------ccccccccCCCC-CCC Q lcl|NC_001629. 264 I------------------------------ESKSSSRDSEPL-GND 279 (279) Q Consensus 264 ~------------------------------~s~~~~~~~~~~-~~~ 279 (279) + |-.-.-.+-+|+ |-| T Consensus 336 i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD 382 (414) T protein:vir:44 336 AKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGD 382 (414) T ss_pred EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 1 100011111222 111 No 65 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=98.12 E-value=1.5e-07 Score=57.94 Aligned_cols=261 Identities=13% Similarity=0.134 Sum_probs=134.4 Q ss_pred Ccc---c-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhcccee-eeeehh-h--h Q lcl|NC_001629. 1 MSL---F-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF-WALQGQEV-YRVWYG-G--F 71 (279) Q Consensus 1 ~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~--~ 71 (279) |.. + -.++-|++++=..|.+.+...+.|+-+ -|-..+-..-++.+.. +.+.|.-. +.++-+ | . T Consensus 51 l~~~~v~~~v~~ia~~ia~lp~~~~~~~~~~l~~~--------PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~ 122 (392) T protein:vir:74 51 LRNSDLFSIILQLSSDLAIVKINAEKKKNQGIIDN--------PSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) T ss_pred hcchHHHHHHHHHHHhhccCceeeccchhhhhhhh--------cCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEE Confidence 110 0 123456777766777777776655442 3444555555555553 34556543 333322 1 1 Q ss_pred hhh---hhhcccchh--hh-h---h--c-CCCccEEEEeecceeeeeccc-----ccccc-chhhHHHHHHHHHh--hhh Q lcl|NC_001629. 72 KYY---AQRVNADQF--NI-L---V--R-EPNRRQVTIRTSDYEMLLNPF-----YGANP-QRFGVMFGMASNGI--GRR 131 (279) Q Consensus 72 ~~y---~~~v~~d~f--N~-~---v--~-~~~~~~vtlP~SDV~iieNPf-----~~V~~-ee~t~MLd~aLnaI--~~K 131 (279) +.| |.+|.+..- .. + + . .....++++|-+||.-|-.|. ++..+ +.....++.++++- ..+ T Consensus 123 ~L~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~ 202 (392) T protein:vir:74 123 KWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS 202 (392) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEecCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 333 244443321 10 0 0 1 112246789999998775543 33322 12222244443332 222 Q ss_pred -hhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 -LDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSEY 209 (279) Q Consensus 132 -LeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq~ 209 (279) ..+.+..++.++++-+..+++ ++.++.+++.+. +.+-+|+.+++.|.++++|.-.-.- ...+-.++.+++.+..| T Consensus 203 ~f~ng~~p~~il~~~~~~~~~~--~~~~~~~~~~~~-~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~f 279 (392) T protein:vir:74 203 SLNSSLNVPGVLTVKGGGLLSD--KDKASRSRSFMK-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVY 279 (392) T ss_pred HHhccCCCceEEEeCCCCCchH--HHHHHHHHHHhc-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHh Confidence 266677888898876533322 122233344443 3345789999999999999643211 12333467778999999 Q ss_pred CCcccccc----cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhhee----------------------cccCcc Q lcl|NC_001629. 210 GMPRELLY----GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYIST----------------------TAKGGK 263 (279) Q Consensus 210 GInekIL~----GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~tt----------------------ta~gg~ 263 (279) |||..++- .+++.+|.++|+..++.|++++.+.+| ..+.++. =.++|. T Consensus 280 gVPp~~lg~~~~~~~~~e~~~~~~~~~l~p~~~~ie~~l------~~~l~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~ 353 (392) T protein:vir:74 280 GLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISEL------EYKLSDHISVNMRPAIDPLGDNYLSTISTATRWGA 353 (392) T ss_pred CCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------HHhccchhcccchhhhcCCHHHHHHHHHHHHhCCC Confidence 99999993 344457889999999999999977633 2222221 001110 Q ss_pred cccccccccC-CCCCCC Q lcl|NC_001629. 264 IESKSSSRDS-EPLGND 279 (279) Q Consensus 264 ~~s~~~~~~~-~~~~~~ 279 (279) +. .-..|.. .-.|-. T Consensus 354 ~t-~near~~~~~~g~~ 369 (392) T protein:vir:74 354 LA-ENQATFVLQEAGYI 369 (392) T ss_pred cC-HHHHHHHHHhCCCC Confidence 00 0000000 000000 No 66 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=98.11 E-value=1.3e-07 Score=58.27 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=127.3 Q ss_pred Ccc-cccchhhccceeeeeee-----------cCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeee Q lcl|NC_001629. 1 MSL-FNLSRRAEDVSFSTFTV-----------QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVW 67 (279) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 67 (279) -.+ --+++.|.+++=..|.+ .+|..++| ----|...+-..-++.+.... +.|.-...+. T Consensus 61 ~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll--------~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~ 132 (413) T protein:vir:96 61 PEVRMAVDCIADLVSNMTIQLMQNGETGDKRIKNDLSRVV--------DIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVK 132 (413) T ss_pred hHHHHHHHHHHHhhccCceEEEEecCCCccccccHHHHHH--------HhccccCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 000 01233444444333332 22222222 222344444444445554443 3444333333 Q ss_pred h---hhh--hhh---hhhcccchhhhhhc-CCCccEEEEeecceeeee-cc-----ccccccc-hhhHHHHHHH--HHhh Q lcl|NC_001629. 68 Y---GGF--KYY---AQRVNADQFNILVR-EPNRRQVTIRTSDYEMLL-NP-----FYGANPQ-RFGVMFGMAS--NGIG 129 (279) Q Consensus 68 ~---~~~--~~y---~~~v~~d~fN~~v~-~~~~~~vtlP~SDV~iie-NP-----f~~V~~e-e~t~MLd~aL--naI~ 129 (279) . ||. +.+ |.+|.++.-..-+. .-.....++|.+||.-|- +| +++..+- .....++.++ .... T Consensus 133 r~~~g~~~~~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 212 (413) T protein:vir:96 133 PQVSGDKIIGLTPISPYKVTFNVSDDDLDYSITFDNKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTK 212 (413) T ss_pred EcCCCCceEEEEEecCceeEEEEcCCeEEEEEeecCcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHH Confidence 2 321 222 23343332111000 000112356788887653 43 3333322 2222233333 2333 Q ss_pred hhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec-cCCceeEEccCc-c-ccccHHHHHHHHHHH Q lcl|NC_001629. 130 RRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI-GSDDDIKQIQPD-Y-SGSLQNDANLAIEIA 205 (279) Q Consensus 130 ~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi-d~geei~QLq~D-Y-Sts~~~die~lkS~L 205 (279) .++ .+.+..++.++++-... ++-+++.+++.+++..-+++-+++.++ +++.++.++.+- . +....+-.++.+.+. T Consensus 213 ~~~~~ng~~p~gil~~~~~l~-~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~I 291 (413) T protein:vir:96 213 KGFMASEYMPNLIVSVDSDSD-ELSDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTV 291 (413) T ss_pred HHHHhccCCccEEEEeCCCCC-HHHHHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHH Confidence 343 55666889999987744 445677777776666555556777887 455666666531 0 111122334666789 Q ss_pred HhhcCCcccccc-cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCccccccc---------------- Q lcl|NC_001629. 206 LSEYGMPRELLY-GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKS---------------- 268 (279) Q Consensus 206 ySq~GInekIL~-GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~---------------- 268 (279) +..||||..+|- +++++.|.++|+..+|.|++++.+.+ ++++.++. |-.++-.- T Consensus 292 a~~fgVP~~~lg~~~~~~~~~~~~~~~~l~P~~~~ie~~------ln~~ll~~---~~~~~fd~~~ll~~d~~~~~~~~~ 362 (413) T protein:vir:96 292 AGIFGVPAFLLGVGTYNKDEFNNFINTKIMSIAQVIQQT------YNKLIVEE---DMYFSLNPRSLYNYSLTEMVSAGA 362 (413) T ss_pred HHHhCCCHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHH------HHHhhCCC---CcEEEEechhhhccCHHHHHHHHH Confidence 999999999994 78999999999999999999997763 34444432 22221100 Q ss_pred -----------ccc---cCCCCCC-C Q lcl|NC_001629. 269 -----------SSR---DSEPLGN-D 279 (279) Q Consensus 269 -----------~~~---~~~~~~~-~ 279 (279) ..| +-+|+.+ | T Consensus 363 ~~~~~G~~t~NE~R~~~g~~p~~~gd 388 (413) T protein:vir:96 363 QMTQLNALRRNEFRNWVGMPPDAEMD 388 (413) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 000 1111111 0 No 67 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=98.09 E-value=1.1e-07 Score=58.68 Aligned_cols=268 Identities=13% Similarity=0.078 Sum_probs=135.0 Q ss_pred Ccc----cccchhhccceeeeeeec----C----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeee- Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ----D----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRV- 66 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 66 (279) |.. --++..|++|+=-.+.+- | ...|--+-.|| ..=-|-..+-..-++.+..+ .+.|.-...+ T Consensus 56 l~~~~V~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~ 132 (434) T protein:vir:43 56 MKLSAVWACVRLISTSVAGLPLGVYERKADGSRVDARSFPLYDVV---HNSPNDDMTAFQFWQAMVASMLLWGNAYAEIR 132 (434) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEEEcCCCccccccccHHHHHH---hccCCCCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 110 113344555543333331 1 11121122222 12234444555555666544 4455542222 Q ss_pred ehhhh--h---hhhhhcccchhh--h---hhcCCCccEEEEeecceeeeecc----ccccccc-hhhHHHHH--HHHHhh Q lcl|NC_001629. 67 WYGGF--K---YYAQRVNADQFN--I---LVREPNRRQVTIRTSDYEMLLNP----FYGANPQ-RFGVMFGM--ASNGIG 129 (279) Q Consensus 67 ~~~~~--~---~y~~~v~~d~fN--~---~v~~~~~~~vtlP~SDV~iieNP----f~~V~~e-e~t~MLd~--aLnaI~ 129 (279) +-+|- + ..|.+|.+..-. . -+..++...+++|-+||.-|-+| .++..+- .....++. +..... T Consensus 133 ~~~G~~~~L~~l~p~~v~~~~~~~g~~~y~~~~~~g~~~~~~~~eVih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~ 212 (434) T protein:vir:43 133 RAAGRPAALDFLLPSRVDLECDENGRLKYFYTTKKGARREIERTNMLHIPAFTLDGRIGLSAIRYGVDVFGSVMSAEDAA 212 (434) T ss_pred eCCCcEEEEEEEcCcceEEEEcCCCeEEEEEEecCceEEEEccccEEEecCcCCCCccccCHHHHHHHHHHHHHHHHHHH Confidence 22331 1 224555443211 1 11334556789999999888543 3332211 11122222 223333 Q ss_pred hhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHh Q lcl|NC_001629. 130 RRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALS 207 (279) Q Consensus 130 ~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LyS 207 (279) .++ .+.+...+.++.|-... ++-+++.++.++++. .+.+-+|+.+++.|.++++|.-.-.. ...+-.++.+.+.+. T Consensus 213 ~~~f~ng~~~~gil~~~~~l~-~e~~~~~r~~~~~~~-g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~ 290 (434) T protein:vir:43 213 NGTFKNGLLPTVAFKVDRILQ-PAQREEFREYVKSVS-GAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICR 290 (434) T ss_pred HHHHhccCCcceEEecCCCCC-HHHHHHHHHHHHHhc-CccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 344 45556888899987744 444566666665543 34456789999999999999521111 112234466788899 Q ss_pred hcCCcccccc--------cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCc----------------- Q lcl|NC_001629. 208 EYGMPRELLY--------GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGG----------------- 262 (279) Q Consensus 208 q~GInekIL~--------GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg----------------- 262 (279) .||||..++- ++..|++.++|+..+|.|+++++|.+|- .+.++...+.| T Consensus 291 ~fgVPp~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln------~kL~~~~~~~~~~~~fd~~~llr~d~~~ 364 (434) T protein:vir:43 291 WFGVPPWMIGQTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVN------KRLLTAPERIRYYAEFSLEGFLKADSAG 364 (434) T ss_pred HhCCCHHHhCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH------hhcCChhhhcCceEEEechhhhccCHHH Confidence 9999998872 3444888999999999999999887543 33333221111 Q ss_pred ------------cc--ccccccccCCCC-CCC Q lcl|NC_001629. 263 ------------KI--ESKSSSRDSEPL-GND 279 (279) Q Consensus 263 ------------~~--~s~~~~~~~~~~-~~~ 279 (279) -+ |-.-..-+-+|+ |-| T Consensus 365 r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 396 (434) T protein:vir:43 365 RAAWYSTMAQNGFMTRNEGRRKENLPELPGGD 396 (434) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 11 000011112222 111 No 68 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=98.06 E-value=7.2e-07 Score=54.25 Aligned_cols=272 Identities=12% Similarity=0.087 Sum_probs=138.4 Q ss_pred CcccccchhhccceeeeeeecCcchhHH-HHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhhh------- Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLL-LGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGGF------- 71 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------- 71 (279) --..-.+.-+++|+=..|.+-++..+.- -..+.-|+..--|-..+-..-.+.++.+. +.|.-...+..+|. T Consensus 32 ~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~ 111 (723) T protein:vir:94 32 VAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPD 111 (723) T ss_pred HHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcccccee Confidence 0011123345555555555544332221 12334444444566666655566666544 44554333322221 Q ss_pred hh---hhhhcccchh------------hhhhcCCCccEEEEeecceeeee-----ccccccccc-hhhHHHHH--HHHHh Q lcl|NC_001629. 72 KY---YAQRVNADQF------------NILVREPNRRQVTIRTSDYEMLL-----NPFYGANPQ-RFGVMFGM--ASNGI 128 (279) Q Consensus 72 ~~---y~~~v~~d~f------------N~~v~~~~~~~vtlP~SDV~iie-----NPf~~V~~e-e~t~MLd~--aLnaI 128 (279) +. +|..+.+.+. .--+...+.+++++|-+||.-|- ||.+++.+= .....|+. +.... T Consensus 112 ~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~ 191 (723) T protein:vir:94 112 EIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATW 191 (723) T ss_pred EEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHH Confidence 11 1111211110 01134566778899999998763 344444322 22222333 33334 Q ss_pred hhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCee----------eccCCceeEEccCccccccHHH Q lcl|NC_001629. 129 GRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVS----------VIGSDDDIKQIQPDYSGSLQND 197 (279) Q Consensus 129 ~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~Gvt----------Yid~geei~QLq~DYSts~~~d 197 (279) ..+. .+.+...+.++.+ + -+++-+++.+++.+++.+-+++-+.+. +++.|-++++|. .+..| T Consensus 192 ~~~~f~NG~~p~giL~~~-~-l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~-----~s~~D 264 (723) T protein:vir:94 192 QRQSFKNGARPGGVVNLG-D-MDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLS-----MSPAE 264 (723) T ss_pred HHHHHhcCCCcceEEEcC-C-CCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEcc-----CCHHH Confidence 4555 4444578888876 4 567778888888888766555444344 445677888875 33445 Q ss_pred HHH------HHHHHHhhcCCcccccccccc----cceehhhhhhhHHHHHHHhcccccc---hh-hhhh--h-------- Q lcl|NC_001629. 198 ANL------AIEIALSEYGMPRELLYGQSN----EVTIIAFAIQKVLPLLKQHDKNIVF---NQ-ENFV--A-------- 253 (279) Q Consensus 198 ie~------lkS~LySq~GInekIL~GtaT----eeqkiAyy~stV~PLLkQyek~lvf---~~-E~fv--~-------- 253 (279) +.+ .+.+.+..||||..++-|++| +++.++|+..+|.|++++.|..|-. .+ +.+. . T Consensus 265 ~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr 344 (723) T protein:vir:94 265 MDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDIGWTVEWDFNSVPALQ 344 (723) T ss_pred HHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccCceEEeecchhhhh Confidence 544 456688999999876666665 5788999999999999998764321 11 1110 0 Q ss_pred --------hheecccCcccccc--cccccCCCCC-CC Q lcl|NC_001629. 254 --------YISTTAKGGKIESK--SSSRDSEPLG-ND 279 (279) Q Consensus 254 --------y~ttta~gg~~~s~--~~~~~~~~~~-~~ 279 (279) ++.+--+.|.+.-- -..-+-+|+. .| T Consensus 345 ~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd 381 (723) T protein:vir:94 345 EDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGI 381 (723) T ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCc Confidence 00100011211110 0011233442 22 No 69 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=98.06 E-value=1.1e-07 Score=58.84 Aligned_cols=266 Identities=15% Similarity=0.181 Sum_probs=139.7 Q ss_pred Cc---c-cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhhh---- Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 71 (279) |. + --++..|++++=..+.+.++.-+.|+-+ -|..-+-..-++.++... +.|.-...+-.++. T Consensus 45 l~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l~~~--------PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 116 (386) T protein:vir:49 45 LKNSDLFSIISQLSNDLATAKITTSRKQLQGIVDN--------PSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDM 116 (386) T ss_pred hccHHHHHHHHHHHHHhhhCceeeccchhhhhhhc--------cCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEE Confidence 00 0 1223456666666666666655544332 244444444555665443 45665333322221 Q ss_pred hhh---hhhcccchh---hhhh-----c-CCCccEEEEeecceeeeecccc-----cccc-chhhHHHHHHHHH--hhhh Q lcl|NC_001629. 72 KYY---AQRVNADQF---NILV-----R-EPNRRQVTIRTSDYEMLLNPFY-----GANP-QRFGVMFGMASNG--IGRR 131 (279) Q Consensus 72 ~~y---~~~v~~d~f---N~~v-----~-~~~~~~vtlP~SDV~iieNPf~-----~V~~-ee~t~MLd~aLna--I~~K 131 (279) ++| |..|.+... |++. . .+...++++|-+||.-|-.|-. +..+ +.....++.+.++ ...+ T Consensus 117 ~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~ 196 (386) T protein:vir:49 117 KWEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTIS 196 (386) T ss_pred EEEEecCceeEEEEcCCCceEEEEEEEcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 122 244544332 2211 1 1234578999999988865532 2222 1222223333333 2233 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcccc-ccHHHHHHHHHHHHhhc Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSG-SLQNDANLAIEIALSEY 209 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSt-s~~~die~lkS~LySq~ 209 (279) . .+.+..++.++++-....++.++ . .+++.+.+++-+|+.+++.|.++.+|...-.. ...+-.++.+.+.+..| T Consensus 197 ~~~ng~~~~~il~~~~~~~~~~~~~-~---~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 272 (386) T protein:vir:49 197 ALKNALNANGILKIKGGGLLDFKTK-V---SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVY 272 (386) T ss_pred HHHccCCccEEEEeCCCCChHHHHH-H---HHHHHHhccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHh Confidence 3 55666999999987765555433 2 23344556666899999999999999743222 22344577889999999 Q ss_pred CCccccccc----ccccceehhhhhhhHHHHHHHhcccccc----hh------------hhhhhhheecccCcccccccc Q lcl|NC_001629. 210 GMPRELLYG----QSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQ------------ENFVAYISTTAKGGKIESKSS 269 (279) Q Consensus 210 GInekIL~G----taTeeqkiAyy~stV~PLLkQyek~lvf----~~------------E~fv~y~ttta~gg~~~s~~~ 269 (279) |||..+|-| +++-++..+||..+|.|+++.++.+|-. .- +.+...+.+=.++|.+.-- . T Consensus 273 gVPp~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~n-E 351 (386) T protein:vir:49 273 GIPESIVGGDGDQQSSLEMIYNIYFKSVSRYLRPFVSEMSKKLSCEVDVDISPAVDPTGSNYISLINSMVKSGTLAQN-Q 351 (386) T ss_pred CCCHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccchhhhccCHHHHHHHHHHHHhCCCcCHH-H Confidence 999999954 4555788899999999999886553311 11 1111122222233332211 1 Q ss_pred ccc----------CCCCCCC Q lcl|NC_001629. 270 SRD----------SEPLGND 279 (279) Q Consensus 270 ~~~----------~~~~~~~ 279 (279) .|. ..|-+.+ T Consensus 352 ~r~~l~~~~~~~~~~~~~~~ 371 (386) T protein:vir:49 352 GLYILQQAEILPKELPDGKN 371 (386) T ss_pred HHHHHhhCCCCCCcCcchhc Confidence 110 0111111 No 70 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=98.03 E-value=1.7e-07 Score=57.75 Aligned_cols=266 Identities=14% Similarity=0.125 Sum_probs=140.8 Q ss_pred Ccc-cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccceeeeeehhhh----hhh Q lcl|NC_001629. 1 MSL-FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQEVYRVWYGGF----KYY 74 (279) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~y 74 (279) ..+ --+++.|++|+=..|.+.+.+.+.|+-+ -|...+-..-++.+..+.+ .|.-...+..++. ..| T Consensus 48 ~~V~~~i~~Ia~~ia~l~~~~~~~~~~~l~~~--------PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~ 119 (384) T protein:vir:49 48 SDLFSIISQLSNDLATAKITTSRKQLQGIVDN--------PSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWE 119 (384) T ss_pred HHHHHHHHHHHHHHhhCceeeecchhhhhhhc--------cCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEE Confidence 001 1134567777777777777776654322 4555566666677766544 5654333332221 233 Q ss_pred ---hhhcccch---hhhh---hcCC---CccEEEEeecceeeeeccc-----cccccc-hhhHHHHHHHHHh--hhhh-h Q lcl|NC_001629. 75 ---AQRVNADQ---FNIL---VREP---NRRQVTIRTSDYEMLLNPF-----YGANPQ-RFGVMFGMASNGI--GRRL-D 133 (279) Q Consensus 75 ---~~~v~~d~---fN~~---v~~~---~~~~vtlP~SDV~iieNPf-----~~V~~e-e~t~MLd~aLnaI--~~KL-e 133 (279) |.+|.+.. .+.+ ++.. ...++++|.+||.-+-.|- ++..+= ..-..++.++++- ..++ . T Consensus 120 ~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 199 (384) T protein:vir:49 120 YLRPSQVSFNRLDNQNGLYYNITFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALK 199 (384) T ss_pred EEcCceeEEEEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 45555432 1221 1211 2346899999999776543 322221 1112233333332 2233 5 Q ss_pred ccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccc-cHHHHHHHHHHHHhhcCCc Q lcl|NC_001629. 134 SQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGMP 212 (279) Q Consensus 134 qqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts-~~~die~lkS~LySq~GIn 212 (279) +.+..++.++++-....++.+++. ++....+++-+|+.+++.|.++.++...-..+ ..+-.++.+.+.+..|||| T Consensus 200 ng~~~~~il~~~~~~~~~~~~~~~----~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp 275 (384) T protein:vir:49 200 NALNANGILKIKGGGLLDFKTKQS----RSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIP 275 (384) T ss_pred ccCCCceEEEeCCCCChHHHHHHH----HHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCC Confidence 567799999998776666544433 33345566778999999999999997433322 2455678889999999999 Q ss_pred ccccccc----cc----cceehhhhhhhHHHHHHHhcccccch---h--------hhhhhh-heecccCccccccccccc Q lcl|NC_001629. 213 RELLYGQ----SN----EVTIIAFAIQKVLPLLKQHDKNIVFN---Q--------ENFVAY-ISTTAKGGKIESKSSSRD 272 (279) Q Consensus 213 ekIL~Gt----aT----eeqkiAyy~stV~PLLkQyek~lvf~---~--------E~fv~y-~ttta~gg~~~s~~~~~~ 272 (279) ..+|-++ +| +.++.+|...++.|+++.++..|..+ + -...+| +..--++|... ....|. T Consensus 276 ~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t-~~e~~~ 354 (384) T protein:vir:49 276 ESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLA-QNQGLY 354 (384) T ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCccc-HHHHHH Confidence 9999653 33 34445566666677777765543210 0 000111 11111233221 111111 Q ss_pred C---CC-CCCC Q lcl|NC_001629. 273 S---EP-LGND 279 (279) Q Consensus 273 ~---~~-~~~~ 279 (279) . .| ..|+ T Consensus 355 ~l~~~g~~~ne 365 (384) T protein:vir:49 355 VLQQAEILPKD 365 (384) T ss_pred HHhhCCCCChh Confidence 0 01 1122 No 71 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=97.96 E-value=3.5e-07 Score=55.97 Aligned_cols=255 Identities=12% Similarity=0.137 Sum_probs=121.3 Q ss_pred Cc----c-cccchhhccceeeeee-----------ecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccc-- Q lcl|NC_001629. 1 MS----L-FNLSRRAEDVSFSTFT-----------VQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQ-- 61 (279) Q Consensus 1 ~~----~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 61 (279) ++ . .-+++.|++++-..+. +.+|..++|.- --|...+-..-++.+....+ .|. T Consensus 39 ~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~~~~~~~~~~lL~~--------~PN~~~t~~~f~~~~v~~~ll~~~Gn 110 (403) T protein:vir:80 39 LSDNPEVRMAVHKIAELISSMTIHLMQNTDNGDIRIKNELSRKIDI--------NPYSLMTRKAWMYNIVYTMLLDGEGN 110 (403) T ss_pred hhhhHHHHHHHHHHHHhhhhCceEEEEecCCceeecCChHHHHHhc--------cCCcCCCHHHHHHHHHHHHhhcCCcc Confidence 00 0 0122333343322222 23343333321 23333333333344433332 222 Q ss_pred -eeeeeehh-h--hhhhhhhcccchhhhhhcCCCc-----cEEEEeecceeeee-c-----cccccccc-hhhHHHHHH- Q lcl|NC_001629. 62 -EVYRVWYG-G--FKYYAQRVNADQFNILVREPNR-----RQVTIRTSDYEMLL-N-----PFYGANPQ-RFGVMFGMA- 124 (279) Q Consensus 62 -~~~~~~~~-~--~~~y~~~v~~d~fN~~v~~~~~-----~~vtlP~SDV~iie-N-----Pf~~V~~e-e~t~MLd~a- 124 (279) -++.+|-+ | .++|| +..+..... ..... +..++|.+||.-|- + |+++..+- .....++.+ T Consensus 111 a~i~~~~~~~g~~~~L~~--l~p~~v~~~-~~~~g~~~~y~~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~ 187 (403) T protein:vir:80 111 SVVFPKYTTSGLIDELIP--LAPSKVSFV-DTDTGYQIWYQGKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLK 187 (403) T ss_pred EEEEEEEcCCCcEEEEEE--EcCCeeEEE-EcCCceEEEEeecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHH Confidence 24444432 1 23332 111111111 11111 12346666775333 2 23333322 122223322 Q ss_pred -HHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeecc-CCceeEEccCc-c-ccccHHHHH Q lcl|NC_001629. 125 -SNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIG-SDDDIKQIQPD-Y-SGSLQNDAN 199 (279) Q Consensus 125 -LnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid-~geei~QLq~D-Y-Sts~~~die 199 (279) ......+. .+.+...+.++++-.... +-.++.++++.+...-+.+-+|...+. .++++.|+.|- - +....+..+ T Consensus 188 ~~~~~~~~~~~ng~~p~~il~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~ 266 (403) T protein:vir:80 188 QATTTKKSFMSGKYMPSLIVKVDAATAE-LSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVE 266 (403) T ss_pred HHHHHHHHHHhccCCcceEEEeCCCCCh-HHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHH Confidence 22333344 445567888988877544 445667777766654554557777774 44667766542 1 111234456 Q ss_pred HHHHHHHhhcCCcccccc-cccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCC Q lcl|NC_001629. 200 LAIEIALSEYGMPRELLY-GQSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGN 278 (279) Q Consensus 200 ~lkS~LySq~GInekIL~-GtaTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~ 278 (279) +.+.+.+..||||..+|- |+.++.|..+|+..+|.|++++++.+ ..+++++. ++=.++- ....-+-- T Consensus 267 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~f~~~~l~P~~~~ie~~------l~~kll~~--~~~~~~f----~~~~ll~~ 334 (403) T protein:vir:80 267 LDKRTVAGIFGVPAFLLGVGKYDKDEYNNFINSTILPIAKGIEQE------LTRKLLIS--PDLYFKF----NPRSLYAY 334 (403) T ss_pred HhHHHHHHHhCCCHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH------HHHhccCC--CCcEEEe----echhhhcc Confidence 778889999999999984 78899999999999999999998864 34444433 1100100 00001111 Q ss_pred C Q lcl|NC_001629. 279 D 279 (279) Q Consensus 279 ~ 279 (279) | T Consensus 335 d 335 (403) T protein:vir:80 335 D 335 (403) T ss_pred C Confidence 2 No 72 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=97.83 E-value=2.1e-06 Score=51.74 Aligned_cols=268 Identities=11% Similarity=0.095 Sum_probs=130.1 Q ss_pred Cc---c-cccchhhccceeeeeeecCcc---hhHH-HHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeeeehhh- Q lcl|NC_001629. 1 MS---L-FNLSRRAEDVSFSTFTVQDPT---TDLL-LGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRVWYGG- 70 (279) Q Consensus 1 ~~---~-~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 70 (279) |. + --+++.|++|+=..|.+--.+ .... -..+.=++-.--|..-+-..-++.+..+. +.|.....+..++ T Consensus 45 l~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~ 124 (416) T protein:vir:12 45 LVQPDIFACVNVLSDDIAKLPIHTYKRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSH 124 (416) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC Confidence 00 0 012334555544443331000 0000 00011111122344444444455555443 3455433333221 Q ss_pred ---hhhh---hhhcccchhhh---h--hcCCCccEEEEeecceeeeeccc----ccccc-chhhHHHHHHHHH--hhhhh Q lcl|NC_001629. 71 ---FKYY---AQRVNADQFNI---L--VREPNRRQVTIRTSDYEMLLNPF----YGANP-QRFGVMFGMASNG--IGRRL 132 (279) Q Consensus 71 ---~~~y---~~~v~~d~fN~---~--v~~~~~~~vtlP~SDV~iieNPf----~~V~~-ee~t~MLd~aLna--I~~KL 132 (279) -+.| |..|.+..-.. + .-..+.+++++|-++|.-|-+|- ++..+ +....-++.+.++ -..++ T Consensus 125 G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~g~~~~~~~~eiih~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~ 204 (416) T protein:vir:12 125 GYPEALFPLRPDYTNAYVHPTTGMLWYQTVLNGKAIELYDYEVLHFKGLSTDGIHGKSPIGVVREHIGAQAAATKYNAKL 204 (416) T ss_pred CcEEEEEEECCcceEEEEeCCCcEEEEEEecCCeEEEecCccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 1223 33444322110 0 01123357889999988775332 22211 1122223333322 33333 Q ss_pred -hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHHHHHHHhhcC Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLAIEIALSEYG 210 (279) Q Consensus 133 -eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~lkS~LySq~G 210 (279) .+.+..++.+++|-. .+++.+++.+++.+. +.+-+|+.+++.|-++++|.-.-. ....+-..+.+.+.+..|| T Consensus 205 ~~ng~~p~~il~~~~~-~~~e~~~~~~~~~~~----~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fg 279 (416) T protein:vir:12 205 YKNEATPRGILKVPAF-LDEKPKENVRKEWKR----VNKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYK 279 (416) T ss_pred HhcCCCCceEEecCCC-CCHHHHHHHHHHHHH----HhcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhC Confidence 667779999999876 455566666655543 334589999999999999963211 1112334566788889999 Q ss_pred Ccccccc----ccc--ccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccC----------------------- Q lcl|NC_001629. 211 MPRELLY----GQS--NEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKG----------------------- 261 (279) Q Consensus 211 InekIL~----Gta--TeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~g----------------------- 261 (279) ||..+|- +++ .|++.++|+..+|.|++++.+.+| +++.++...++ T Consensus 280 VPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l------~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~ 353 (416) T protein:vir:12 280 VPLHKLNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQEL------NVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEY 353 (416) T ss_pred CCHHHhCCccCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcCchhhcCCceEEeechhhhccCHHHHHHH Confidence 9999993 333 267888999999999999988744 33333322211 Q ss_pred -------cc--cccccccccCCCC-CCC Q lcl|NC_001629. 262 -------GK--IESKSSSRDSEPL-GND 279 (279) Q Consensus 262 -------g~--~~s~~~~~~~~~~-~~~ 279 (279) |- +|-.-...+-+|+ |-| T Consensus 354 ~~~~~~~G~~T~NE~R~~~gl~Pi~ggd 381 (416) T protein:vir:12 354 LKTLHETGVLNKDEIRELLERNPIENGD 381 (416) T ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 10 1111111222333 112 No 73 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=97.83 E-value=1.1e-06 Score=53.15 Aligned_cols=263 Identities=12% Similarity=0.118 Sum_probs=131.2 Q ss_pred Ccc----------c-ccchhhccceeeeeee----cCc----chhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hcc Q lcl|NC_001629. 1 MSL----------F-NLSRRAEDVSFSTFTV----QDP----TTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQG 60 (279) Q Consensus 1 ~~~----------~-~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 60 (279) +.+ + -++..|++++=-.+.| .|- ..+--+-+|| . --|-..+-.+-++.+..+. |.| T Consensus 37 ~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~~~~~~~~~~~ll---~-~PN~~~t~~~f~~~~~~~l~l~G 112 (423) T protein:vir:81 37 MTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGRERVREGHLARVC---K-LANSDMTMYDLLERTMFDLCLYD 112 (423) T ss_pred hhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCceeeeccchHHHHh---h-cCCCCCCHHHHHHHHHHHHhhcC Confidence 111 1 1223344443222222 111 1111111332 2 3566666666667666554 455 Q ss_pred ceeeeeeh--hh----hhhhhhhcc---cchh----hhh------hcCCCccEEEEeecceeeeeccc-----cccccc- Q lcl|NC_001629. 61 QEVYRVWY--GG----FKYYAQRVN---ADQF----NIL------VREPNRRQVTIRTSDYEMLLNPF-----YGANPQ- 115 (279) Q Consensus 61 ~~~~~~~~--~~----~~~y~~~v~---~d~f----N~~------v~~~~~~~vtlP~SDV~iieNPf-----~~V~~e- 115 (279) .-..-+.. || ...+|.++. ++.+ +.+ ....+.+.+++|-++|.-|-+|- ++..+= T Consensus 113 na~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~ 192 (423) T protein:vir:81 113 EFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYIIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQ 192 (423) T ss_pred CeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEEEEecCCCceEEEEcccceEEecCCCCCCccccccHHH Confidence 43222221 11 122333322 1111 111 11234567899999998776653 333221 Q ss_pred hhhHHHHH--HHHHhhhhh-hccCceEEEEecCcccc----hHHHHHHHHHHHHHHH-HHHHhcCCeeeccCCceeEEcc Q lcl|NC_001629. 116 RFGVMFGM--ASNGIGRRL-DSQAQIKIYWKTKVSSG----LKEVWDRIRERLTQQQ-QLAREFNGVSVIGSDDDIKQIQ 187 (279) Q Consensus 116 e~t~MLd~--aLnaI~~KL-eqqgslKifikL~i~~~----~ee~reqa~sRik~Mq-elA~~~~GvtYid~geei~QLq 187 (279) ....-++. +......++ .+.+...+.++.+-... .++-+++.+++++++. ..+++-+++.+++.|-++++|. T Consensus 193 ~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~ 272 (423) T protein:vir:81 193 SLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFH 272 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEecc Confidence 12222332 333344454 44455788888775543 4555556666655554 3455567899999999999995 Q ss_pred CccccccHHHH------HHHHHHHHhhcCCccccc----ccccc--cceehhhhhhhHHHHHHHhcccccchhhhhhhhh Q lcl|NC_001629. 188 PDYSGSLQNDA------NLAIEIALSEYGMPRELL----YGQSN--EVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYI 255 (279) Q Consensus 188 ~DYSts~~~di------e~lkS~LySq~GInekIL----~GtaT--eeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ 255 (279) - +..|+ .+.+++.+..||||..++ .+++. |++.++|+..+|.|++++.|.+| .++.+ T Consensus 273 ~-----s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l------~~~L~ 341 (423) T protein:vir:81 273 T-----TSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVREFRKALYGDNLGSWIRIIQDVM------NLFLL 341 (423) T ss_pred C-----ChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH------hhhhc Confidence 3 22343 455677899999998887 33332 77889999999999999987643 33333 Q ss_pred eeccc--Cc-ccc------------cccccccCCCCCC-------C Q lcl|NC_001629. 256 STTAK--GG-KIE------------SKSSSRDSEPLGN-------D 279 (279) Q Consensus 256 ttta~--gg-~~~------------s~~~~~~~~~~~~-------~ 279 (279) +.... +| .++ .+.... ..-+++ + T Consensus 342 ~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~-~~~l~~~G~~T~NE 386 (423) T protein:vir:81 342 PRVGIDNEKFYFEFNLEEKLRASFEEAAEIK-RAAVGNVAWMTINE 386 (423) T ss_pred CccccccCccEEEecchhhhccCHHHHHHHH-HHHHhCCCCcCHHH Confidence 33211 11 011 110000 001122 1 No 74 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=97.65 E-value=3.4e-06 Score=50.60 Aligned_cols=275 Identities=16% Similarity=0.145 Sum_probs=127.0 Q ss_pred Ccccc-cchhhccce---e-------eeee--ecCcchhHH-------HHHHHHHHHHh--------------hcccchh Q lcl|NC_001629. 1 MSLFN-LSRRAEDVS---F-------STFT--VQDPTTDLL-------LGKLLGLVSYF--------------DNVDYSE 46 (279) Q Consensus 1 ~~~~~-~~~~~~~~~---~-------~~~~--~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~ 46 (279) |++|| ..||....+ + ++.. .-++.+-+- +-.+-+-|+-- -|...+- T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~~~~~~~~L~~~PN~~~t~ 80 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFIGNQVFTSVLNNPSHLTNA 80 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccccchHHHHHhhcccccCCH Confidence 99998 444432111 0 1100 011222111 11111112111 1222222 Q ss_pred hhhhhhhhhh-hhccce-eeeeehh-h--hhhh---hhhcccchhhhh----hc-CCCccEEEEeecceeeeeccccccc Q lcl|NC_001629. 47 ASKLEDLFFW-ALQGQE-VYRVWYG-G--FKYY---AQRVNADQFNIL----VR-EPNRRQVTIRTSDYEMLLNPFYGAN 113 (279) Q Consensus 47 ~~~~~~~~~~-~~~~~~-~~~~~~~-~--~~~y---~~~v~~d~fN~~----v~-~~~~~~vtlP~SDV~iieNPf~~V~ 113 (279) ..-++.+..+ .|.|.. ++-++-+ | .++| |..|.++.-+-- |. -.+.+..++|-+||.-|-.|-++.+ T Consensus 81 ~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~~~~evih~~~~~~~~~ 160 (359) T protein:vir:10 81 FSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYPSAKYNASEMIHVKIMAYGVD 160 (359) T ss_pred HHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCceEEEEcccceEEeccCCCCCC Confidence 2233444433 456765 3433322 2 1222 244544322210 11 1235578899999987754433222 Q ss_pred c----------chhhHHHH--HHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCC Q lcl|NC_001629. 114 P----------QRFGVMFG--MASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSD 180 (279) Q Consensus 114 ~----------ee~t~MLd--~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~g 180 (279) + +.....++ .+.....++. .+.+..++.++.|-..-+++-+++.+++.+++.. +++-+++.+++.| T Consensus 161 ~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~-~~n~g~~~vl~~g 239 (359) T protein:vir:10 161 TLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANG-GNNSGRVMVLDQS 239 (359) T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhC-ccccCCceecCCC Confidence 1 11222222 3333344454 4455689999998655677778888888877654 3455779999999 Q ss_pred ceeEEccCcc-ccccHHHHHHHHHHHHhhcCCcccccccc----cccceehhhhhhh----HHHHHHHhcccc----cc- Q lcl|NC_001629. 181 DDIKQIQPDY-SGSLQNDANLAIEIALSEYGMPRELLYGQ----SNEVTIIAFAIQK----VLPLLKQHDKNI----VF- 246 (279) Q Consensus 181 eei~QLq~DY-Sts~~~die~lkS~LySq~GInekIL~Gt----aTeeqkiAyy~st----V~PLLkQyek~l----vf- 246 (279) .++++|.-.- +....+..++.+...+..||||..++-++ ++-.+..+++..+ +.|+.+..+..| -+ T Consensus 240 ~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~~~~~~ 319 (359) T protein:vir:10 240 ADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLISELRIKCDSSIGVD 319 (359) T ss_pred cceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 9999986311 11112233445778899999999999543 2333334444444 555554433211 11 Q ss_pred -------hhhhhhhhheecccCcccccccccc---cCCCCC Q lcl|NC_001629. 247 -------NQENFVAYISTTAKGGKIESKSSSR---DSEPLG 277 (279) Q Consensus 247 -------~~E~fv~y~ttta~gg~~~s~~~~~---~~~~~~ 277 (279) .++.+++.+.+-.++|-+. ....| +-+|.= T Consensus 320 ~~~~~~~d~~~~~~~~~~~~~~G~~t-~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 320 MSPITDYSNSVFKADILNWVKEGIIE-PTEAKTLLESKGII 359 (359) T ss_pred chhhhhcCHHHHHHHHHHHHhCCCcC-HHHHHHHhCCCCCC Confidence 1122222222222222221 11111 111111 No 75 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=97.62 E-value=5.9e-06 Score=49.27 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=126.9 Q ss_pred Ccc----cccchhhccceeeeeeec---CcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeeee-e--hh Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQ---DPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWA-LQGQEVYRV-W--YG 69 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~ 69 (279) |.+ --++..|.+++=..|.|- |-.. .-...+.=|+-.--|-..+-..-++.+..+. +.|.-.-.+ + -+ T Consensus 43 l~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~-~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~ 121 (409) T protein:vir:84 43 MTLGAFYACVTLLADTVASLSIDAYRKKDNVR-IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEA 121 (409) T ss_pred hccHHHHHHHHHHHHhhhhCceEEEEecCCcc-cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCC Confidence 000 011222333332222221 1000 0001111122233555556566666666444 446543222 2 23 Q ss_pred hh--h---hhhhhcccchhh----hhh---cCCCccEEEEeecceeeeecc-----ccccccc-hhhHHHHHHHHH--hh Q lcl|NC_001629. 70 GF--K---YYAQRVNADQFN----ILV---REPNRRQVTIRTSDYEMLLNP-----FYGANPQ-RFGVMFGMASNG--IG 129 (279) Q Consensus 70 ~~--~---~y~~~v~~d~fN----~~v---~~~~~~~vtlP~SDV~iieNP-----f~~V~~e-e~t~MLd~aLna--I~ 129 (279) |. + .-|.+|.+.+.. ..+ ...+. .++|.+||..+-.+ .++..+= .+...++.+.++ .. T Consensus 122 g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~~~g--~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~ 199 (409) T protein:vir:84 122 NRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYRIDG--KVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYG 199 (409) T ss_pred CceEEEEEEcCceeEEEEcCCCcceEEEEEecCCc--eEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHH Confidence 31 1 225555544321 111 12222 35789999988532 3333221 222223333332 33 Q ss_pred hhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCcc-ccccHHHHHHHHHHHHh Q lcl|NC_001629. 130 RRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDY-SGSLQNDANLAIEIALS 207 (279) Q Consensus 130 ~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DY-Sts~~~die~lkS~LyS 207 (279) .+. .+.+..++.++++-....|+. ++.+++..+ ..++-+++.+++.|.+++++...= +....+-.++.+.+.+. T Consensus 200 ~~~f~ng~~p~gil~~~~~l~~e~~-~~~~~~~~~---~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~ 275 (409) T protein:vir:84 200 LRWFRDSANPSGILSSDADLTPDQV-KQTQKQWIQ---SHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAM 275 (409) T ss_pred HHHHhcCCCccEEEecCCCCCHHHH-HHHHHHHHH---HhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 333 556778999999877655543 344443333 334457799999999999996321 11112233466889999 Q ss_pred hcCCccccccc--------ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 208 EYGMPRELLYG--------QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 208 q~GInekIL~G--------taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) .||||..+|-. +..|++.++|+..+|.|++++.|.++ +++. .+|-.|+-.-+ .-+--| T Consensus 276 ~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l------~~~L----~~g~~i~fd~~----~l~~~d 341 (409) T protein:vir:84 276 WFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQAL------DTFL----PRGQFVKFNVD----GLMRGD 341 (409) T ss_pred HhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH------HHhc----cCCCeEEEech----hhhccC Confidence 99999998831 23478889999999999999988744 2221 11222221100 011112 No 76 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=97.53 E-value=6.1e-06 Score=49.16 Aligned_cols=273 Identities=11% Similarity=0.046 Sum_probs=132.8 Q ss_pred Ccc----cccchhhccceeeeeeecC--------cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeee Q lcl|NC_001629. 1 MSL----FNLSRRAEDVSFSTFTVQD--------PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVW 67 (279) Q Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (279) |.+ --++..|++|+=..+.+.. ...+-++-.| --=-|...+-..-++.+..+ .+.|.-...+- T Consensus 50 l~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g~~~~~~~~~~~~L----~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~ 125 (454) T protein:vir:93 50 LSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARL----CRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) T ss_pred hccHHHHHHHHHHHHhhccCceEEEEeccCCccchhhhHHHHHH----HhcCCCCCCHHHHHHHHHHHHhhcCceEEEEE Confidence 110 0122334444433333211 0111111111 11224444444445555533 44555433322 Q ss_pred hh--hh--hhh---hhhcccch---------hhhhhcCCCccEEEEeecceeeee-----ccccccccch-hhHHHH--H Q lcl|NC_001629. 68 YG--GF--KYY---AQRVNADQ---------FNILVREPNRRQVTIRTSDYEMLL-----NPFYGANPQR-FGVMFG--M 123 (279) Q Consensus 68 ~~--~~--~~y---~~~v~~d~---------fN~~v~~~~~~~vtlP~SDV~iie-----NPf~~V~~ee-~t~MLd--~ 123 (279) .+ |- ++| |.+|.+.. |+.--+.+....+++|..||.-|- +++++..+-+ ...-++ . T Consensus 126 r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~ 205 (454) T protein:vir:93 126 RNARGQIKELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGH 205 (454) T ss_pred ECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHH Confidence 22 11 233 22232211 111011222346789999987553 3445544321 111232 3 Q ss_pred HHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHH Q lcl|NC_001629. 124 ASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLA 201 (279) Q Consensus 124 aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYS-ts~~~die~l 201 (279) +...-..++ .+.+...+.+++|-.. +++-+++.+++++++..- .+-+|+.+++.|-++++|...-. ....+-..+. T Consensus 206 ~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~ 283 (454) T protein:vir:93 206 HIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) T ss_pred HHHHHHHHHHhccCCccEEEecCCCC-CHHHHHHHHHHHHHHhcc-cccCCceeccCCceEEEcccChhHHHHHHHHHHH Confidence 333334444 4556688999998664 456677888888877754 45578999999999999874221 1122344467 Q ss_pred HHHHHhhcCCcccccc----c--ccccceehhhhhhhHHHHHHHhcccccc----hhhhhhhhhe--------------- Q lcl|NC_001629. 202 IEIALSEYGMPRELLY----G--QSNEVTIIAFAIQKVLPLLKQHDKNIVF----NQENFVAYIS--------------- 256 (279) Q Consensus 202 kS~LySq~GInekIL~----G--taTeeqkiAyy~stV~PLLkQyek~lvf----~~E~fv~y~t--------------- 256 (279) +.+.+..||||..+|- + +..|++.++|+..+|.|++++.|..+-. .++.++.|-. T Consensus 284 ~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D~~~r~~~~ 363 (454) T protein:vir:93 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTL 363 (454) T ss_pred HHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccCHHHHHHHH Confidence 7888999999998883 1 1247778899999999999997764321 1122222211 Q ss_pred -ecccCccc--ccccccccCCCCCC-C Q lcl|NC_001629. 257 -TTAKGGKI--ESKSSSRDSEPLGN-D 279 (279) Q Consensus 257 -tta~gg~~--~s~~~~~~~~~~~~-~ 279 (279) +-.+.|-+ |-.-.--+-+|+.+ | T Consensus 364 ~~~~~~G~~T~NE~R~~~gl~pi~ggD 390 (454) T protein:vir:93 364 GDAVKNTLLTPNEARKRENLPPLAGGD 390 (454) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 11111211 11111113334322 2 No 77 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=97.20 E-value=3.5e-05 Score=44.99 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=127.4 Q ss_pred Cc---cc-ccchhhccceeeeeeec---C----cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee-eee Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQ---D----PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVY-RVW 67 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 67 (279) |. .| -.+..|++++=..|.|- + +..+--+-+|| .-=-|...+-..-++.+..+ .+.|.-.. -++ T Consensus 58 l~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r 134 (424) T protein:vir:45 58 MKLAAVYSCIYVLSSSLAQMPLHVMRRHKGKVEPARDHPAFYLV---HDEPNTWQTSYKWRELKQRHILGWGNGYTWVKR 134 (424) T ss_pred hccHHHHHHHHHHHHHHhhCceEEEEecCCceeecccchHHHHH---HhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 00 00 11223333333222221 0 11111111111 11234444443434444433 33444321 122 Q ss_pred hh-hh--hhh---hhhcccchhhhhhc---CCCccEEEEeecceeeeeccc----cccccc-hhhHHHHHHHHH--hhhh Q lcl|NC_001629. 68 YG-GF--KYY---AQRVNADQFNILVR---EPNRRQVTIRTSDYEMLLNPF----YGANPQ-RFGVMFGMASNG--IGRR 131 (279) Q Consensus 68 ~~-~~--~~y---~~~v~~d~fN~~v~---~~~~~~vtlP~SDV~iieNPf----~~V~~e-e~t~MLd~aLna--I~~K 131 (279) -+ |. +.| |.+|.++.-+--+. .++..+.++|-.||.-|-.|- ++..+= .+...++.+.++ ..++ T Consensus 135 ~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~~eVih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~ 214 (424) T protein:vir:45 135 NRRGEVISLDCCMPWETTLMNTGGRYTYGLYNEYGAFAISPDDMIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTES 214 (424) T ss_pred cCCCcEEEEEEecCceEEEEEcCCeEEEEEEecCceEEECcccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 11 11 222 34444433221000 122345679999998775432 222221 222223333332 3344 Q ss_pred h-hccCceEEEEecCcccchHHHHHHHHHHHHHHH-HHHHhcCCeeeccCCceeEEccCccc-cccHHHHHHHHHHHHhh Q lcl|NC_001629. 132 L-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQ-QLAREFNGVSVIGSDDDIKQIQPDYS-GSLQNDANLAIEIALSE 208 (279) Q Consensus 132 L-eqqgslKifikL~i~~~~ee~reqa~sRik~Mq-elA~~~~GvtYid~geei~QLq~DYS-ts~~~die~lkS~LySq 208 (279) + .+.+...+.++++-.. +++-+++.+++..+.. -...+-+++.+++.|-++++|.-.=. ....+-.++.+.+.+.. T Consensus 215 ~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 293 (424) T protein:vir:45 215 FFSGNARPAGIVSVKSGL-NKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGI 293 (424) T ss_pred HHhccCCccEEEEeCCCC-CHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 4 4455588889988764 4444555555554443 23334478999999999999964210 11123345778899999 Q ss_pred cCCcccccc----cccc--cceehhhhhhhHHHHHHHhcccccc----hhh----hhhhh----------------heec Q lcl|NC_001629. 209 YGMPRELLY----GQSN--EVTIIAFAIQKVLPLLKQHDKNIVF----NQE----NFVAY----------------ISTT 258 (279) Q Consensus 209 ~GInekIL~----GtaT--eeqkiAyy~stV~PLLkQyek~lvf----~~E----~fv~y----------------~ttt 258 (279) ||||..++- ++++ |++.++|+..+|.|++++.|.+|-. ..| .++.| +.+= T Consensus 294 fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~ 373 (424) T protein:vir:45 294 FNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFA 373 (424) T ss_pred hCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHH Confidence 999999983 3333 7888999999999999998874432 111 11111 1111 Q ss_pred ccCcccccccccc---cCCCCCC-C Q lcl|NC_001629. 259 AKGGKIESKSSSR---DSEPLGN-D 279 (279) Q Consensus 259 a~gg~~~s~~~~~---~~~~~~~-~ 279 (279) ..+|- -+....| +-+|+.+ | T Consensus 374 ~~~g~-~T~NE~R~~~gl~pi~ggD 397 (424) T protein:vir:45 374 ITDGW-MSRNEARAFEDMNPVEGLD 397 (424) T ss_pred HhCCC-cCHHHHHHHhCCCCCCCcc Confidence 11221 1111112 2223322 1 No 78 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=97.16 E-value=6.9e-05 Score=43.39 Aligned_cols=264 Identities=13% Similarity=0.102 Sum_probs=124.0 Q ss_pred Cc----------------cc--ccchhhcccee-e------------eeeecCcc---hhHHHHHHHHHHHHh------h Q lcl|NC_001629. 1 MS----------------LF--NLSRRAEDVSF-S------------TFTVQDPT---TDLLLGKLLGLVSYF------D 40 (279) Q Consensus 1 ~~----------------~~--~~~~~~~~~~~-~------------~~~~~~~~---~~~~~~~~~~~~~~~------~ 40 (279) +. +. -.+-+|++|+- + .+...+++ ++--..++.=+-.++ . T Consensus 77 ~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 156 (576) T protein:vir:96 77 MKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDK 156 (576) T ss_pred hhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCC Confidence 00 00 01123333321 0 11112221 111111111111111 1 Q ss_pred cccc-hhhhhhhhhhh-hhhccceeee-ee-hh--hh--hhhh---hhcccchhhh---------hh-cCCCccEEEEee Q lcl|NC_001629. 41 NVDY-SEASKLEDLFF-WALQGQEVYR-VW-YG--GF--KYYA---QRVNADQFNI---------LV-REPNRRQVTIRT 99 (279) Q Consensus 41 ~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~-~~--~~--~~y~---~~v~~d~fN~---------~v-~~~~~~~vtlP~ 99 (279) |-++ +-.+-++-+.. +.+.|.-... +| .. |- +.|| .+|.+..-.. .+ -.++...+++|- T Consensus 157 ~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 236 (576) T protein:vir:96 157 DIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTS 236 (576) T ss_pred CCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecc Confidence 2222 22223344443 2445554333 22 11 11 3332 2232211000 00 122345567888 Q ss_pred ccee-eeecccc-------cccc-chhhHHHHHHH--HHhhhhh-hccCceEEEEecCcccc-hHHHHHHHHHHHHHHHH Q lcl|NC_001629. 100 SDYE-MLLNPFY-------GANP-QRFGVMFGMAS--NGIGRRL-DSQAQIKIYWKTKVSSG-LKEVWDRIRERLTQQQQ 166 (279) Q Consensus 100 SDV~-iieNPf~-------~V~~-ee~t~MLd~aL--naI~~KL-eqqgslKifikL~i~~~-~ee~reqa~sRik~Mqe 166 (279) .||- .+-||.. ++.+ +.+...|+.++ .....++ .+.+..++.|+.+.+.. +++-+++.++..+++.. T Consensus 237 ~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~ 316 (576) T protein:vir:96 237 REMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFS 316 (576) T ss_pred cceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhc Confidence 8864 4445543 3221 12222233333 3334444 45566899999876543 55556666666655544 Q ss_pred HHHhcCCe-eeccCCceeEEccCccccc-cHHHHHHHHHHHHhhcCCccccc-----------------ccccccceehh Q lcl|NC_001629. 167 LAREFNGV-SVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGMPRELL-----------------YGQSNEVTIIA 227 (279) Q Consensus 167 lA~~~~Gv-tYid~geei~QLq~DYSts-~~~die~lkS~LySq~GInekIL-----------------~GtaTeeqkiA 227 (279) -+.+-+++ .+++.|-++++|...-.-+ ..+-..+.+++.+..||||..++ +.+..|++.++ T Consensus 317 G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~ 396 (576) T protein:vir:96 317 GINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQ 396 (576) T ss_pred cccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHH Confidence 44444554 7889999999996432222 24445677899999999999888 23456888999 Q ss_pred hhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 228 FAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 228 yy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) |+-.+|.|++.++|.+| +.+.++. .|..+.-. .+.-| T Consensus 397 f~~~tL~P~~~~ie~~l------n~~Ll~~--~~~~~~~~-------f~r~d 433 (576) T protein:vir:96 397 SQNKGLQPLLRFIEDLI------NTHIISE--YSDKYVFQ-------FVGGD 433 (576) T ss_pred HHHHHHHHHHHHHHHHH------Hhhhchh--ccCceEEE-------eccCC Confidence 99999999999988744 2222211 11111100 11111 No 79 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=97.08 E-value=1.9e-05 Score=46.50 Aligned_cols=272 Identities=10% Similarity=0.053 Sum_probs=117.8 Q ss_pred Ccc-cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchh-hhhhhhhhhh-hhcccee-eeeeh-h--h--h Q lcl|NC_001629. 1 MSL-FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSE-ASKLEDLFFW-ALQGQEV-YRVWY-G--G--F 71 (279) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~-~--~--~ 71 (279) +++ +.|-++..+. +..+...+..+-.+|=.+....+-++.- ..-++.+..+ .+.|.-. |.++- . | . T Consensus 122 ~~~~i~l~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~ 196 (563) T protein:vir:99 122 LGFEVRLRDLDAEP-----GRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLE 196 (563) T ss_pred ccceeEEeecCCCc-----chhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceE Confidence 111 1111111100 1111112222222211111111122211 1222333322 2334322 22211 1 1 0 Q ss_pred hhh---hhhcccchhh--hh-------h-cCCCccEEEEeecce-eeeeccccccccc-----hh---hHHHHHHH--HH Q lcl|NC_001629. 72 KYY---AQRVNADQFN--IL-------V-REPNRRQVTIRTSDY-EMLLNPFYGANPQ-----RF---GVMFGMAS--NG 127 (279) Q Consensus 72 ~~y---~~~v~~d~fN--~~-------v-~~~~~~~vtlP~SDV-~iieNPf~~V~~e-----e~---t~MLd~aL--na 127 (279) ..| |.+|.+..-. .. + --.++...++|..|| +.+-||....... ++ ..-++.++ .. T Consensus 197 ~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:99 197 KFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred EEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHH Confidence 122 2333321100 00 0 012334557777774 4566765432221 12 12223222 22 Q ss_pred hhhhh-hccCceEEEEecCccc-chHHHHHHHHHHHHHHHHHHHhcCCe-eeccCCceeEEccCccccc-cHHHHHHHHH Q lcl|NC_001629. 128 IGRRL-DSQAQIKIYWKTKVSS-GLKEVWDRIRERLTQQQQLAREFNGV-SVIGSDDDIKQIQPDYSGS-LQNDANLAIE 203 (279) Q Consensus 128 I~~KL-eqqgslKifikL~i~~-~~ee~reqa~sRik~MqelA~~~~Gv-tYid~geei~QLq~DYSts-~~~die~lkS 203 (279) ...++ .+.+..++.|+.+.+. -+++-++++++..+++..-+.+-+++ .+++.|-++++|..+=.-+ ..+-..+.+. T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:99 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 33344 5566789999887654 35666677776666555434343444 7889999999996432211 2344456778 Q ss_pred HHHhhcCCcccccc-----------------cccccceehhhhhhhHHHHHHHhcccccc---hhhhhhhhheecccCcc Q lcl|NC_001629. 204 IALSEYGMPRELLY-----------------GQSNEVTIIAFAIQKVLPLLKQHDKNIVF---NQENFVAYISTTAKGGK 263 (279) Q Consensus 204 ~LySq~GInekIL~-----------------GtaTeeqkiAyy~stV~PLLkQyek~lvf---~~E~fv~y~ttta~gg~ 263 (279) +.++.||||..+|- ..-.+++.+.|+..+|.|+++++|.+|-. .+ +...|.-.-. .|- T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~-~~~~~~~~f~-r~D 434 (563) T protein:vir:99 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE-YGDKYTFQFV-GGD 434 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-cccccEEEec-cCC Confidence 89999999998872 12347788899999999999998875432 11 1111111100 111 Q ss_pred cccccccccCC-CCC------CC Q lcl|NC_001629. 264 IESKSSSRDSE-PLG------ND 279 (279) Q Consensus 264 ~~s~~~~~~~~-~~~------~~ 279 (279) +.+........ -.+ |+ T Consensus 435 ~~~~~e~~~~~~~~~~G~lT~NE 457 (563) T protein:vir:99 435 TKSATDKLNILKLETQIFKTVNE 457 (563) T ss_pred HHHHHHHHHHHHHhcCCccCHHH Confidence 11100000000 000 01 No 80 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=97.08 E-value=1.9e-05 Score=46.50 Aligned_cols=272 Identities=10% Similarity=0.053 Sum_probs=117.8 Q ss_pred Ccc-cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchh-hhhhhhhhhh-hhcccee-eeeeh-h--h--h Q lcl|NC_001629. 1 MSL-FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSE-ASKLEDLFFW-ALQGQEV-YRVWY-G--G--F 71 (279) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~-~--~--~ 71 (279) +++ +.|-++..+. +..+...+..+-.+|=.+....+-++.- ..-++.+..+ .+.|.-. |.++- . | . T Consensus 122 ~~~~i~l~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~ 196 (563) T protein:vir:95 122 LGFEVRLRDLDAEP-----GRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLE 196 (563) T ss_pred ccceeEEeecCCCc-----chhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceE Confidence 111 1111111100 1111112222222211111111122211 1222333322 2334322 22211 1 1 0 Q ss_pred hhh---hhhcccchhh--hh-------h-cCCCccEEEEeecce-eeeeccccccccc-----hh---hHHHHHHH--HH Q lcl|NC_001629. 72 KYY---AQRVNADQFN--IL-------V-REPNRRQVTIRTSDY-EMLLNPFYGANPQ-----RF---GVMFGMAS--NG 127 (279) Q Consensus 72 ~~y---~~~v~~d~fN--~~-------v-~~~~~~~vtlP~SDV-~iieNPf~~V~~e-----e~---t~MLd~aL--na 127 (279) ..| |.+|.+..-. .. + --.++...++|..|| +.+-||....... ++ ..-++.++ .. T Consensus 197 ~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:95 197 KFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred EEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHH Confidence 122 2333321100 00 0 012334557777774 4566765432221 12 12223222 22 Q ss_pred hhhhh-hccCceEEEEecCccc-chHHHHHHHHHHHHHHHHHHHhcCCe-eeccCCceeEEccCccccc-cHHHHHHHHH Q lcl|NC_001629. 128 IGRRL-DSQAQIKIYWKTKVSS-GLKEVWDRIRERLTQQQQLAREFNGV-SVIGSDDDIKQIQPDYSGS-LQNDANLAIE 203 (279) Q Consensus 128 I~~KL-eqqgslKifikL~i~~-~~ee~reqa~sRik~MqelA~~~~Gv-tYid~geei~QLq~DYSts-~~~die~lkS 203 (279) ...++ .+.+..++.|+.+.+. -+++-++++++..+++..-+.+-+++ .+++.|-++++|..+=.-+ ..+-..+.+. T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:95 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 33344 5566789999887654 35666677776666555434343444 7889999999996432211 2344456778 Q ss_pred HHHhhcCCcccccc-----------------cccccceehhhhhhhHHHHHHHhcccccc---hhhhhhhhheecccCcc Q lcl|NC_001629. 204 IALSEYGMPRELLY-----------------GQSNEVTIIAFAIQKVLPLLKQHDKNIVF---NQENFVAYISTTAKGGK 263 (279) Q Consensus 204 ~LySq~GInekIL~-----------------GtaTeeqkiAyy~stV~PLLkQyek~lvf---~~E~fv~y~ttta~gg~ 263 (279) +.++.||||..+|- ..-.+++.+.|+..+|.|+++++|.+|-. .+ +...|.-.-. .|- T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~-~~~~~~~~f~-r~D 434 (563) T protein:vir:95 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE-YGDKYTFQFV-GGD 434 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-cccccEEEec-cCC Confidence 89999999998872 12347788899999999999998875432 11 1111111100 111 Q ss_pred cccccccccCC-CCC------CC Q lcl|NC_001629. 264 IESKSSSRDSE-PLG------ND 279 (279) Q Consensus 264 ~~s~~~~~~~~-~~~------~~ 279 (279) +.+........ -.+ |+ T Consensus 435 ~~~~~e~~~~~~~~~~G~lT~NE 457 (563) T protein:vir:95 435 TKSATDKLNILKLETQIFKTVNE 457 (563) T ss_pred HHHHHHHHHHHHHhcCCccCHHH Confidence 11100000000 000 01 No 81 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=97.02 E-value=7.7e-05 Score=43.15 Aligned_cols=270 Identities=11% Similarity=-0.021 Sum_probs=119.2 Q ss_pred Cccccc---------------chhhccceeeeeee----cCcchhHHHH------HHHHHHHHhhcccchhhh----hhh Q lcl|NC_001629. 1 MSLFNL---------------SRRAEDVSFSTFTV----QDPTTDLLLG------KLLGLVSYFDNVDYSEAS----KLE 51 (279) Q Consensus 1 ~~~~~~---------------~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~~~ 51 (279) ++..|. ++.|++++=..+.+ .|...+.... .+.-|+. =-|.+.+... -++ T Consensus 111 f~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~-rPNp~mT~~eFwqsFl~ 189 (945) T protein:vir:10 111 FFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLG 189 (945) T ss_pred eeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHh-CCCcccChhHHHHHHHH Confidence 222222 22445554333322 2221111000 0111222 1354444322 122 Q ss_pred hhh-hhhhccceeeeeeh--hhh--hhhh---hhcccch--hhh-----hhcCCCccEEEEeecce-eeeeccccccc-- Q lcl|NC_001629. 52 DLF-FWALQGQEVYRVWY--GGF--KYYA---QRVNADQ--FNI-----LVREPNRRQVTIRTSDY-EMLLNPFYGAN-- 113 (279) Q Consensus 52 ~~~-~~~~~~~~~~~~~~--~~~--~~y~---~~v~~d~--fN~-----~v~~~~~~~vtlP~SDV-~iieNPf~~V~-- 113 (279) .+. -+.+.|.....++. +|. .+|| .+|.+.. -.. -...++++.+++|.+|+ ..+-+|-.... T Consensus 190 ~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~ 269 (945) T protein:vir:10 190 MVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMY 269 (945) T ss_pred HHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccc Confidence 222 23445554433332 221 2332 2232211 000 00124555667787774 44545432111 Q ss_pred ---cchhh---HHHHHHHHHh--hhhh-hccCc-eEEEEecCccc-----c----hHHHHHHHHHHHHHHHHHHHhcCCe Q lcl|NC_001629. 114 ---PQRFG---VMFGMASNGI--GRRL-DSQAQ-IKIYWKTKVSS-----G----LKEVWDRIRERLTQQQQLAREFNGV 174 (279) Q Consensus 114 ---~ee~t---~MLd~aLnaI--~~KL-eqqgs-lKifikL~i~~-----~----~ee~reqa~sRik~MqelA~~~~Gv 174 (279) .-++. .-++.++++- ..+. .++|. .++.++.+-.. . +++-+++.++..+++..-. .-+|. T Consensus 270 GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~-NnG~p 348 (945) T protein:vir:10 270 GYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGD-YTQVP 348 (945) T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCc-ccccc Confidence 11222 2233333332 3343 23443 57777765321 1 2333444444444433222 22456 Q ss_pred eeccCCceeEEccCcccccc-HHHHHHHHHHHHhhcCCccccc------ccccccceehhhhhhhHHHHHHHhcccccch Q lcl|NC_001629. 175 SVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALSEYGMPRELL------YGQSNEVTIIAFAIQKVLPLLKQHDKNIVFN 247 (279) Q Consensus 175 tYid~geei~QLq~DYSts~-~~die~lkS~LySq~GInekIL------~GtaTeeqkiAyy~stV~PLLkQyek~lvf~ 247 (279) .+++.|.++++|...-..+. .+-.++.+.+.+..||||..++ .++..|.+.++|+..++.|+++++|.. T Consensus 349 iVLdeGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqe---- 424 (945) T protein:vir:10 349 ILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKG---- 424 (945) T ss_pred eecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---- Confidence 67899999999975432222 3445667789999999998887 234568889999999999999998774 Q ss_pred hhhhhhhheecccCc--ccccccccccCC-----C----CCC------C Q lcl|NC_001629. 248 QENFVAYISTTAKGG--KIESKSSSRDSE-----P----LGN------D 279 (279) Q Consensus 248 ~E~fv~y~ttta~gg--~~~s~~~~~~~~-----~----~~~------~ 279 (279) ++++.++- ..|- .++-....+... - .++ + T Consensus 425 --LNrkLl~~-~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNE 470 (945) T protein:vir:10 425 --FDEVVSEF-RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINE 470 (945) T ss_pred --HHHhcccc-ccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHH Confidence 33333221 1111 111111111000 0 000 0 No 82 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=96.90 E-value=0.00011 Score=42.31 Aligned_cols=263 Identities=10% Similarity=-0.014 Sum_probs=125.1 Q ss_pred Cccc--------------ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhccceeee Q lcl|NC_001629. 1 MSLF--------------NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF-WALQGQEVYR 65 (279) Q Consensus 1 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 65 (279) +.+. .++..|++++-..|.+..+..+++. .-.|...+-.+-++.+.. +.+.|..... T Consensus 39 ~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~~--------~lpN~~~t~~~f~~~~v~dlll~Gnayv~ 110 (540) T protein:vir:41 39 VHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGGVEE--------LLRACRPSFEFILLQALEDLQVFNYCTLE 110 (540) T ss_pred CCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccchhh--------hccCCCCCHHHHHHHHHHHHHhcCCeEEE Confidence 1111 1223456666555666555444321 124666555555555543 4455664333 Q ss_pred eehhhh----hhh---hhhcccc----------------------hhhhhhcCCCccEEEEeecceeeeec-----cccc Q lcl|NC_001629. 66 VWYGGF----KYY---AQRVNAD----------------------QFNILVREPNRRQVTIRTSDYEMLLN-----PFYG 111 (279) Q Consensus 66 ~~~~~~----~~y---~~~v~~d----------------------~fN~~v~~~~~~~vtlP~SDV~iieN-----Pf~~ 111 (279) +...+. +.| |..|.+. ..+.....+....+++|-+||.-|-. ++++ T Consensus 111 i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G 190 (540) T protein:vir:41 111 VVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYG 190 (540) T ss_pred EEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCccc Confidence 322221 111 1222111 00111233445567889889875533 2344 Q ss_pred cccch---hhHHHHHHHHHhhhhh-hccCceEEEEecCcccc-----hHHHHHHHHHHHHHHHHHH-----HhcCCeeec Q lcl|NC_001629. 112 ANPQR---FGVMFGMASNGIGRRL-DSQAQIKIYWKTKVSSG-----LKEVWDRIRERLTQQQQLA-----REFNGVSVI 177 (279) Q Consensus 112 V~~ee---~t~MLd~aLnaI~~KL-eqqgslKifikL~i~~~-----~ee~reqa~sRik~MqelA-----~~~~GvtYi 177 (279) .-+=. .+-.+..+......++ .+.+...+.++.+-... +++.++++++++++..+-+ ++-+++.++ T Consensus 191 ~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vL 270 (540) T protein:vir:41 191 VPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVF 270 (540) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEE Confidence 33221 1111333333444444 44455777777764332 3444555666666554332 233445565 Q ss_pred c------CCceeEEccCccccc-cHHHHHHHHHHHHhhcCCccccc----cccc----ccceehhhhhhhHHHHHHHhcc Q lcl|NC_001629. 178 G------SDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGMPRELL----YGQS----NEVTIIAFAIQKVLPLLKQHDK 242 (279) Q Consensus 178 d------~geei~QLq~DYSts-~~~die~lkS~LySq~GInekIL----~Gta----TeeqkiAyy~stV~PLLkQyek 242 (279) + .|-+++.|...-..+ ..+-.++.+++.+..||||..++ .+++ .|.+.++|+..+|.|++++++. T Consensus 271 e~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~ 350 (540) T protein:vir:41 271 SIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSS 350 (540) T ss_pred ecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHH Confidence 4 466888876422111 12234566778999999999988 1333 2677899999999999999776 Q ss_pred cccchhhhhhhhhee-------------------------cccCccccccccccc----CCCCCCC Q lcl|NC_001629. 243 NIVFNQENFVAYIST-------------------------TAKGGKIESKSSSRD----SEPLGND 279 (279) Q Consensus 243 ~lvf~~E~fv~y~tt-------------------------ta~gg~~~s~~~~~~----~~~~~~~ 279 (279) .|- .+.++. -.++|-+ +-.-.|. -+| |.| T Consensus 351 ~ln------~~L~~~~~~~~~i~f~~~~ll~~D~~~~~~~lv~~G~l-T~NE~Re~L~g~e~-gdd 408 (540) T protein:vir:41 351 VLT------DFIQLKLDPGARFVFNEEILMESEFVHNYALLVQCGVL-TPSEVREKLFGLDG-GPD 408 (540) T ss_pred HHH------HhhhhccCCceEEEecchhhcchHHHHHHHHHHhCCCC-CHHHHHHHhCcCcC-CCc Confidence 432 111111 0111211 0001111 111 111 No 83 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=96.83 E-value=4.5e-05 Score=44.44 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=106.1 Q ss_pred Ccccccchhh-cc------------------------ceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhh Q lcl|NC_001629. 1 MSLFNLSRRA-ED------------------------VSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFF 55 (279) Q Consensus 1 ~~~~~~~~~~-~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (279) |+...+-+++ +| ++-.++.+..- .+..-..+.-+...--|.+-... ....| T Consensus 123 ~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~~lp~~~~Rv~~~-~~~~~~~~~~ll~~~pn~~~~~~---~~~~~ 198 (651) T protein:vir:99 123 ATPERVKELARQDYHGVGWLALEMLTDIEGRPVGLAYVPARTVRVRRP-QNRFDQPRHPEEGRYVDGDVADI---ASRGY 198 (651) T ss_pred CCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhhhhcChhheeeecc-cccccchhhhhhhcccccccchh---HHHHH Confidence 2222221111 11 11111221110 00000001111111111111100 00112 Q ss_pred hhhccc-eee-eeeh------------hh------------hhhhhhhcccc--hhhhhhcCCCccEEEEeecceeeee- Q lcl|NC_001629. 56 WALQGQ-EVY-RVWY------------GG------------FKYYAQRVNAD--QFNILVREPNRRQVTIRTSDYEMLL- 106 (279) Q Consensus 56 ~~~~~~-~~~-~~~~------------~~------------~~~y~~~v~~d--~fN~~v~~~~~~~vtlP~SDV~iie- 106 (279) |-+.+. .+| .+|- .| ..+.+..++.. .|.. .+.....++|-.||.-|- T Consensus 199 ~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~eViHir~ 275 (651) T protein:vir:99 199 VQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYREDEESEREPIFVDRETGDVTT---GDANGLENRPANELIFIPN 275 (651) T ss_pred HHHHhcCcceEEEeeccccceeeeeccCCcceeEEeccCcceeeeeecccceeeeEEE---cCCCceeEecccceEEecC Confidence 222111 111 0000 00 00000000000 0111 111224567888887663 Q ss_pred ----ccccccccc---hhhHHHHHHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeecc Q lcl|NC_001629. 107 ----NPFYGANPQ---RFGVMFGMASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIG 178 (279) Q Consensus 107 ----NPf~~V~~e---e~t~MLd~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid 178 (279) ++.+++-+= ..+-.+..+......++ .+.+..++.++.+=..-+++-+++.++.++++. ..-+++.+++ T Consensus 276 ~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gil~~~~~~ls~e~~~~lr~~~~~~~---~nagk~~vL~ 352 (651) T protein:vir:99 276 PSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMVIKVTGGELSEESKRDLRQMLNGLR---EESHRAVVLE 352 (651) T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHHh---ccCCceEEee Confidence 333443322 11111334444455555 444558888887633345565666666665533 3446677776 Q ss_pred C-----------CceeEEccCccccccHHHHH------HHHHHHHhhcCCcccccc------cccccceehhhhhhhHHH Q lcl|NC_001629. 179 S-----------DDDIKQIQPDYSGSLQNDAN------LAIEIALSEYGMPRELLY------GQSNEVTIIAFAIQKVLP 235 (279) Q Consensus 179 ~-----------geei~QLq~DYSts~~~die------~lkS~LySq~GInekIL~------GtaTeeqkiAyy~stV~P 235 (279) . |=+++.|. .++..|++ +.+.+.+..||||..++- ++..|.+.++|+..+|.| T Consensus 353 ~~~~~~~~~~~~g~~~~pls----~~~~~D~qfle~r~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P 428 (651) T protein:vir:99 353 VEKFQSQLDEDVEIELEPMG----QGISEEMDFRQFREKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQDKDFALEVIQP 428 (651) T ss_pred cccccccccccCCceEEEcC----cCchhhHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCcccHHHHHHHHHHHHHHH Confidence 5 44555543 33344554 446678999999988771 222388899999999999 Q ss_pred HHHHhcccccchhhhhhhhheecc--------------------------------cCcc--cccccccccCCCCCCC Q lcl|NC_001629. 236 LLKQHDKNIVFNQENFVAYISTTA--------------------------------KGGK--IESKSSSRDSEPLGND 279 (279) Q Consensus 236 LLkQyek~lvf~~E~fv~y~ttta--------------------------------~gg~--~~s~~~~~~~~~~~~~ 279 (279) +++++|.+| +++.++... ..|- +|---.-.+-+|++++ T Consensus 429 ~~~~ie~el------n~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~ 500 (651) T protein:vir:99 429 EQHTFAEWL------YQIIHQQALGVTDWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEP 500 (651) T ss_pred HHHHHHHHH------HHhhcCccccccCceEEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 999988644 333322211 1121 1111112233444332 No 84 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=96.50 E-value=0.0001 Score=42.45 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=113.0 Q ss_pred cccc-----------chhhccceeeeeeec------C-----cchhHHHHHHHH-----HHHHhhcccchhhhhhhhhhh Q lcl|NC_001629. 3 LFNL-----------SRRAEDVSFSTFTVQ------D-----PTTDLLLGKLLG-----LVSYFDNVDYSEASKLEDLFF 55 (279) Q Consensus 3 ~~~~-----------~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 55 (279) |-+| +..|++++--.+.|. + +..+.+.-.++. ..+.+.+.+-+-..-++-+.. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 1111 223334332222221 0 011111000000 000000000011111111111 Q ss_pred hh-hccceeeeeehhh----------------------------------hhhhhhhcccchhhhh-------hcCCCcc Q lcl|NC_001629. 56 WA-LQGQEVYRVWYGG----------------------------------FKYYAQRVNADQFNIL-------VREPNRR 93 (279) Q Consensus 56 ~~-~~~~~~~~~~~~~----------------------------------~~~y~~~v~~d~fN~~-------v~~~~~~ 93 (279) +. +.|.-...+..++ |.+|......+.-+.+ -..+... T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 11 1122221111111 0111111111111110 0123445 Q ss_pred EEEEeecceeeee-----ccccccccchhh---HHHHHHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHH Q lcl|NC_001629. 94 QVTIRTSDYEMLL-----NPFYGANPQRFG---VMFGMASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQ 164 (279) Q Consensus 94 ~vtlP~SDV~iie-----NPf~~V~~ee~t---~MLd~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~M 164 (279) .+++|-+||.-|- ++++++.+-... -.+..+.....+++ .+.+...+.++++=..-+++-+++++...++. T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 7789999997663 334544322111 11333344444554 44555677777642223555556666665554 Q ss_pred HHH-----------HHhcCCeeeccCCceeEEccCccc---cccHHHHH------HHHHHHHhhcCCcccccc------- Q lcl|NC_001629. 165 QQL-----------AREFNGVSVIGSDDDIKQIQPDYS---GSLQNDAN------LAIEIALSEYGMPRELLY------- 217 (279) Q Consensus 165 qel-----------A~~~~GvtYid~geei~QLq~DYS---ts~~~die------~lkS~LySq~GInekIL~------- 217 (279) .+- +.+-+....+..|.+..++.=++. ..+..|+. +.+++.+..||||..++- T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~ 320 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAF 320 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCc Confidence 321 112233456666666666554443 23445554 456678999999988771 Q ss_pred cccccceehhhhhhhHHHHHHHhcccc---cchhh-----hhhhhhee----------------cccCcc--cccccccc Q lcl|NC_001629. 218 GQSNEVTIIAFAIQKVLPLLKQHDKNI---VFNQE-----NFVAYIST----------------TAKGGK--IESKSSSR 271 (279) Q Consensus 218 GtaTeeqkiAyy~stV~PLLkQyek~l---vf~~E-----~fv~y~tt----------------ta~gg~--~~s~~~~~ 271 (279) ++..+.+..+|+..+|.|++++++..| +|.++ .+++|-.+ =.+.|- +|-.-... T Consensus 321 ~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 400 (467) T protein:vir:31 321 STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF 400 (467) T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 133577889999999999999977633 22211 11222111 001111 11111112 Q ss_pred cCCCCCCC Q lcl|NC_001629. 272 DSEPLGND 279 (279) Q Consensus 272 ~~~~~~~~ 279 (279) +-+|+|.+ T Consensus 401 Gl~pi~d~ 408 (467) T protein:vir:31 401 GFEPFPEE 408 (467) T ss_pred CCCCCCcc Confidence 34455543 No 85 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=96.42 E-value=0.00026 Score=40.26 Aligned_cols=259 Identities=10% Similarity=0.036 Sum_probs=111.2 Q ss_pred Ccc--------------cccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeee Q lcl|NC_001629. 1 MSL--------------FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYR 65 (279) Q Consensus 1 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 65 (279) .+. -.++..|++++--.|.+.......+. ..-.|.+-+-.+-++.+..+ .+.|.-... T Consensus 40 ~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~~~~l~-------~~lpN~~~s~~~f~~~~v~~lll~Gnayi~ 112 (542) T protein:vir:41 40 VNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDDEGVVD-------EFIRACKPSFEYVLLRALEDLQVFNYCTLE 112 (542) T ss_pred CCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeecccchhhh-------hhcCCCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 000 11223445554444554322222211 12245444444444444433 333443222 Q ss_pred eehhhh---h-hh---hhhcccch-------------------h---hhhhcCCCccEEEEeecceeeeec-----cccc Q lcl|NC_001629. 66 VWYGGF---K-YY---AQRVNADQ-------------------F---NILVREPNRRQVTIRTSDYEMLLN-----PFYG 111 (279) Q Consensus 66 ~~~~~~---~-~y---~~~v~~d~-------------------f---N~~v~~~~~~~vtlP~SDV~iieN-----Pf~~ 111 (279) +...+. . .| |..|.+.. | +....+......++|-.||.-|-+ +.++ T Consensus 113 i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~G 192 (542) T protein:vir:41 113 VVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYG 192 (542) T ss_pred EEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCccc Confidence 221110 0 00 11111110 0 011112223344567777765532 2333 Q ss_pred cccc--hhhHH-HHHHHHHhhhhh-hccCceEEEEecCcccc---------hHHHHHHHHHHHHHHH-HHHHhcCCeeec Q lcl|NC_001629. 112 ANPQ--RFGVM-FGMASNGIGRRL-DSQAQIKIYWKTKVSSG---------LKEVWDRIRERLTQQQ-QLAREFNGVSVI 177 (279) Q Consensus 112 V~~e--e~t~M-Ld~aLnaI~~KL-eqqgslKifikL~i~~~---------~ee~reqa~sRik~Mq-elA~~~~GvtYi 177 (279) .-+= -...+ +..+.....+++ .+.+..++.++++-... .++-+++.++.+++.- ....+-+.+.++ T Consensus 193 lspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL 272 (542) T protein:vir:41 193 VPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVF 272 (542) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEe Confidence 3211 01111 333333344454 45555777777764322 2344444454444443 222333345565 Q ss_pred c------CCceeEEccCccccccHHHHHH------HHHHHHhhcCCccccc----ccc----cccceehhhhhhhHHHHH Q lcl|NC_001629. 178 G------SDDDIKQIQPDYSGSLQNDANL------AIEIALSEYGMPRELL----YGQ----SNEVTIIAFAIQKVLPLL 237 (279) Q Consensus 178 d------~geei~QLq~DYSts~~~die~------lkS~LySq~GInekIL----~Gt----aTeeqkiAyy~stV~PLL 237 (279) + .|-++++|.- +..|+++ .+.+.+..||||..++ .++ -.|.+..+|+..+|.|++ T Consensus 273 ~~~~~~~~g~~~~pl~~-----~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~ 347 (542) T protein:vir:41 273 SIPGGDTVKVTFTPLNT-----SQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQ 347 (542) T ss_pred eccCCcccceeEEEcCC-----ChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHH Confidence 3 4556777642 3334444 4667899999999888 222 237889999999999999 Q ss_pred HHhcccccchhhhhhhhheec-------------------------ccCcccccccccc----cCCCCCCC Q lcl|NC_001629. 238 KQHDKNIVFNQENFVAYISTT-------------------------AKGGKIESKSSSR----DSEPLGND 279 (279) Q Consensus 238 kQyek~lvf~~E~fv~y~ttt-------------------------a~gg~~~s~~~~~----~~~~~~~~ 279 (279) ++++..|- .+.++.- .++|-+.-- .-| .-+| |.| T Consensus 348 ~~ie~~ln------~~L~~~~~~~~~~~f~~~~ll~~d~~~~~~~~v~~GilT~N-E~Re~L~g~~p-gdd 410 (542) T protein:vir:41 348 NIISSILT------DFFQVKFNPKTRFKFNDETLLESDSVRNCALLVQSGVLTPA-EARERLFGLDG-GPD 410 (542) T ss_pred HHHHHHHH------hhcccccCCceEEEecchhhcchHHHHHHHHHHhCCCCCHH-HHHHhhCCCCC-CCc Confidence 99776432 1111110 011211100 011 1111 111 No 86 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=95.99 E-value=0.0011 Score=36.71 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=114.7 Q ss_pred Cccc--------ccchhhccce-e------------eeeeecCc-----chhHHHHHHHHHHHHhhcccc-----hhhhh Q lcl|NC_001629. 1 MSLF--------NLSRRAEDVS-F------------STFTVQDP-----TTDLLLGKLLGLVSYFDNVDY-----SEASK 49 (279) Q Consensus 1 ~~~~--------~~~~~~~~~~-~------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 49 (279) +..| -...+|+.|+ | ..+++.++ ..+...-+.+--+-+--|.++ +-..- T Consensus 80 ~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f 159 (547) T protein:vir:63 80 LKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSF 159 (547) T ss_pred HHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHH Confidence 0000 0011222222 1 11223221 112111111111111122222 11222 Q ss_pred hhhhhhh-hhccceeeeeehh--h----hhhh-hhhcccchh----------hhhhcCCCccEEEEeecceeee-ecccc Q lcl|NC_001629. 50 LEDLFFW-ALQGQEVYRVWYG--G----FKYY-AQRVNADQF----------NILVREPNRRQVTIRTSDYEML-LNPFY 110 (279) Q Consensus 50 ~~~~~~~-~~~~~~~~~~~~~--~----~~~y-~~~v~~d~f----------N~~v~~~~~~~vtlP~SDV~ii-eNPf~ 110 (279) ++.+... .+.|.-.+.+... | +... |.+|.+..- .-...-++...+++|-+||.-| -||+. T Consensus 160 ~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~ 239 (547) T protein:vir:63 160 VKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRS 239 (547) T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCC Confidence 2222222 2334433222211 1 1111 222322110 0000122344567888888766 45543 Q ss_pred ccccc--------hhhHHHHHHH--HHhhhhh-hccCceEEEEecCccc-chHHHHHHHHHHHHHHHHHHHhcCCeeec- Q lcl|NC_001629. 111 GANPQ--------RFGVMFGMAS--NGIGRRL-DSQAQIKIYWKTKVSS-GLKEVWDRIRERLTQQQQLAREFNGVSVI- 177 (279) Q Consensus 111 ~V~~e--------e~t~MLd~aL--naI~~KL-eqqgslKifikL~i~~-~~ee~reqa~sRik~MqelA~~~~GvtYi- 177 (279) ..... ....-+..++ .....+. .+.+..++.++.+... -+++-+++.++..+++..-+++-+++.++ T Consensus 240 ~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~ 319 (547) T protein:vir:63 240 DIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS 319 (547) T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc Confidence 22211 1122232222 2233344 4455688888876542 25555666666666555445554556666 Q ss_pred cCCceeEEccCccccccHHHHH------HHHHHHHhhcCCccccc----------------ccccccceehhhhhhhHHH Q lcl|NC_001629. 178 GSDDDIKQIQPDYSGSLQNDAN------LAIEIALSEYGMPRELL----------------YGQSNEVTIIAFAIQKVLP 235 (279) Q Consensus 178 d~geei~QLq~DYSts~~~die------~lkS~LySq~GInekIL----------------~GtaTeeqkiAyy~stV~P 235 (279) +.|-++++|.- +..|+. +.+...+..||||.-++ +..-.+++.++|+..+|.| T Consensus 320 ~~g~~~~~l~~-----~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P 394 (547) T protein:vir:63 320 AEDVKFVNMTP-----SARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQP 394 (547) T ss_pred CCCceEEEcCC-----ChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHH Confidence 46679998853 334444 46678899999998777 2333577888999999999 Q ss_pred HHHHhcccccchhhhhhhhheecccCcccccccccccCCC----------CC------CC Q lcl|NC_001629. 236 LLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEP----------LG------ND 279 (279) Q Consensus 236 LLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~----------~~------~~ 279 (279) +++++|.. ++.++++. .|..+.-+-..-+... .. |+ T Consensus 395 ~~~~ie~~------ln~~L~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~lT~NE 446 (547) T protein:vir:63 395 LLGFIEDF------INKHIVAE--FGDKYTFQFVGGDIKSELESVKILAEKAKVAMTVNE 446 (547) T ss_pred HHHHHHHH------HHhhcccc--cCCceEEEeeccccccHHHHHHHHHHHhCCCcCHHH Confidence 99998763 33333322 1111211111000000 00 00 No 87 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=95.72 E-value=0.0013 Score=36.46 Aligned_cols=273 Identities=14% Similarity=0.169 Sum_probs=117.0 Q ss_pred Ccccc--------cchhh-----------ccceeeeeee--cCcc---------hhHHHHHHHHHHHHhhcccc-hhhhh Q lcl|NC_001629. 1 MSLFN--------LSRRA-----------EDVSFSTFTV--QDPT---------TDLLLGKLLGLVSYFDNVDY-SEASK 49 (279) Q Consensus 1 ~~~~~--------~~~~~-----------~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~ 49 (279) +..|. ...|+ +++.=-.|+| .|+. .+--|-.+|--.....|-.. +-..- T Consensus 88 l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef 167 (574) T protein:vir:80 88 LKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTF 167 (574) T ss_pred HHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHH Confidence 00000 00011 1111111222 1211 11111122211000011111 11123 Q ss_pred hhhhhhh-hhccceeeeeeh-h-hh--hhh---hhhcccchhhh---------hh-cCCCccEEEEeecceeeee-ccc- Q lcl|NC_001629. 50 LEDLFFW-ALQGQEVYRVWY-G-GF--KYY---AQRVNADQFNI---------LV-REPNRRQVTIRTSDYEMLL-NPF- 109 (279) Q Consensus 50 ~~~~~~~-~~~~~~~~~~~~-~-~~--~~y---~~~v~~d~fN~---------~v-~~~~~~~vtlP~SDV~iie-NPf- 109 (279) ++.+... .+.|.-.+.+-. + |- ..| |.+|.+..-+. .+ .-.++..+++|-.||..|- ||. T Consensus 168 ~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~ 247 (574) T protein:vir:80 168 CKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRA 247 (574) T ss_pred HHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCC Confidence 3333332 345655433322 1 10 111 23333321100 00 1234456788888888663 332 Q ss_pred ------ccccc-chhhHHHHHHHHHhh--hhh-hccCceEEEEecCccc-chHHHHHHHHHHHHHHHHHHHhcCCeeec- Q lcl|NC_001629. 110 ------YGANP-QRFGVMFGMASNGIG--RRL-DSQAQIKIYWKTKVSS-GLKEVWDRIRERLTQQQQLAREFNGVSVI- 177 (279) Q Consensus 110 ------~~V~~-ee~t~MLd~aLnaI~--~KL-eqqgslKifikL~i~~-~~ee~reqa~sRik~MqelA~~~~GvtYi- 177 (279) |++.+ +.+-..|+.++++-. .++ .+.+..++.|+++... -+++-+++.++..+++-.-+++-+++..+ T Consensus 248 ~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~ 327 (574) T protein:vir:80 248 DIEVGQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVS 327 (574) T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeec Confidence 33322 122223444443322 233 5556689888886543 34555555655555554444443445455 Q ss_pred cCCceeEEccCccc-cccHHHHHHHHHHHHhhcCCcccccc----------------cccccceehhhhhhhHHHHHHHh Q lcl|NC_001629. 178 GSDDDIKQIQPDYS-GSLQNDANLAIEIALSEYGMPRELLY----------------GQSNEVTIIAFAIQKVLPLLKQH 240 (279) Q Consensus 178 d~geei~QLq~DYS-ts~~~die~lkS~LySq~GInekIL~----------------GtaTeeqkiAyy~stV~PLLkQy 240 (279) +.|-++++|.-.-. ....+-.++.+...+..||||..+|- ....|++.++|+..+|.|++.++ T Consensus 328 ~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~i 407 (574) T protein:vir:80 328 AEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFI 407 (574) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 67889999973211 11122334567788889999998872 13347888999999999999998 Q ss_pred cccccchhhhhhhhheeccc-------Cccccc-----------------cccc---ccCCCC-CCC Q lcl|NC_001629. 241 DKNIVFNQENFVAYISTTAK-------GGKIES-----------------KSSS---RDSEPL-GND 279 (279) Q Consensus 241 ek~lvf~~E~fv~y~ttta~-------gg~~~s-----------------~~~~---~~~~~~-~~~ 279 (279) |..|- ++.++-..+ .+-+.+ ---- .+-+|+ |-| T Consensus 408 e~~ln------~~Ll~~~~~~~~~~f~~~d~~~~~~~~~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD 468 (574) T protein:vir:80 408 EDTVN------TYIVAEFGEKYQFQFRGGDLSAQLDKLKIIEQEGKVFRTVNEIRHDKGLEPIKGGD 468 (574) T ss_pred HHHHH------hhhhhhcCCceEEEecccchhhHHHHHHHHHHHhCCccCHHHHHHHhCCCCCCCCC Confidence 76442 221111000 000000 0000 111233 112 No 88 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=95.04 E-value=0.0029 Score=34.49 Aligned_cols=276 Identities=13% Similarity=0.089 Sum_probs=114.2 Q ss_pred Cccc--------ccchhhccce--------------eeeeeecCcc-----hhHHHHHHHHHHHHhhcccc-----hhhh Q lcl|NC_001629. 1 MSLF--------NLSRRAEDVS--------------FSTFTVQDPT-----TDLLLGKLLGLVSYFDNVDY-----SEAS 48 (279) Q Consensus 1 ~~~~--------~~~~~~~~~~--------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~ 48 (279) +-.| -...+|.+|+ |. +.+.|+. .+..--+.+--+-+--|.++ +-.. T Consensus 84 ~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~-i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~ 162 (551) T protein:vir:80 84 LKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFE-VRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSS 162 (551) T ss_pred HHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCce-EEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHH Confidence 0000 0011222322 22 2333322 12111111111112223332 2222 Q ss_pred hhhhhhhh-hhccceeeeeehh--h--hhhh---hhhcccchhhh----------hhcCCCccEEEEeecceeee-eccc Q lcl|NC_001629. 49 KLEDLFFW-ALQGQEVYRVWYG--G--FKYY---AQRVNADQFNI----------LVREPNRRQVTIRTSDYEML-LNPF 109 (279) Q Consensus 49 ~~~~~~~~-~~~~~~~~~~~~~--~--~~~y---~~~v~~d~fN~----------~v~~~~~~~vtlP~SDV~ii-eNPf 109 (279) -++.+.-. .+.|.-.+.+... | .+.| |.+|.+..-+. ...-++...+++|-.||.-+ -||+ T Consensus 163 f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~ 242 (551) T protein:vir:80 163 FVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPR 242 (551) T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCC Confidence 22322222 1335443322221 1 0111 23333221110 00123344667888888755 4554 Q ss_pred c-------cccc-chhhHHHHHHH--HHhhhhh-hccCceEEEEecCccc-chHHHHHHHHHHHHHHHHHHHhcCCeeec Q lcl|NC_001629. 110 Y-------GANP-QRFGVMFGMAS--NGIGRRL-DSQAQIKIYWKTKVSS-GLKEVWDRIRERLTQQQQLAREFNGVSVI 177 (279) Q Consensus 110 ~-------~V~~-ee~t~MLd~aL--naI~~KL-eqqgslKifikL~i~~-~~ee~reqa~sRik~MqelA~~~~GvtYi 177 (279) . +..+ +.+-..++.++ .....++ .+.+..++.++.+... -+++-+++.++..+++..-+++-+++..+ T Consensus 243 ~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl 322 (551) T protein:vir:80 243 SDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVV 322 (551) T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccc Confidence 3 2221 11222233332 2233444 4455688888776432 24444555555555544334454556676 Q ss_pred -cCCceeEEccCccc-cccHHHHHHHHHHHHhhcCCcccccc----------------cccccceehhhhhhhHHHHHHH Q lcl|NC_001629. 178 -GSDDDIKQIQPDYS-GSLQNDANLAIEIALSEYGMPRELLY----------------GQSNEVTIIAFAIQKVLPLLKQ 239 (279) Q Consensus 178 -d~geei~QLq~DYS-ts~~~die~lkS~LySq~GInekIL~----------------GtaTeeqkiAyy~stV~PLLkQ 239 (279) +.|-++++|.-.=. ....+-..+.+...+..||||.-+|- ..-.+++.++|+..+|.|++++ T Consensus 323 ~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ 402 (551) T protein:vir:80 323 SAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGF 402 (551) T ss_pred cCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 46779998863211 11122245567789999999987771 2224567779999999999999 Q ss_pred hcccccc---hh-hhhh----------------hhheecccCccccccccccc---CCCC--CCC Q lcl|NC_001629. 240 HDKNIVF---NQ-ENFV----------------AYISTTAKGGKIESKSSSRD---SEPL--GND 279 (279) Q Consensus 240 yek~lvf---~~-E~fv----------------~y~ttta~gg~~~s~~~~~~---~~~~--~~~ 279 (279) +|-.|-. .+ +... .+.+...+|+| +-...|. -+|. |-| T Consensus 403 ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~g~l--T~NE~R~~~gl~P~~egGD 465 (551) T protein:vir:80 403 IEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKILAEKAKVAM--TVNEVRKELNLPGDVIGGD 465 (551) T ss_pred HHHHHHhhhccccCCceEEEeeccChhhHHHHHHHHHHHhcCCc--CHHHHHHHhCCCCCCCCCc Confidence 7753321 10 0000 00011111222 1111111 1121 122 No 89 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=94.45 E-value=0.0016 Score=35.91 Aligned_cols=265 Identities=12% Similarity=0.051 Sum_probs=109.9 Q ss_pred Cc-cc-ccchhhccceeeeeeecC---cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-ccceeeeeehhhhhhh Q lcl|NC_001629. 1 MS-LF-NLSRRAEDVSFSTFTVQD---PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWAL-QGQEVYRVWYGGFKYY 74 (279) Q Consensus 1 ~~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y 74 (279) .+ .| -++..|++++=..+.+.. ....+. =++..=-|-..+-.+-++.+ .|.| -|...+.++--+..-+ T Consensus 78 ~~~v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~-----~ll~~~PN~~~t~~~f~~~l-~~~lllGnay~~~i~r~~~G~ 151 (409) T protein:vir:83 78 IDVAWACIDLNASVLSSMPIYRMRNGRIIDSVA-----WMSNPDPEVYTSWQEFAKQL-FWDFQLGEAFVLPMAHGSDGY 151 (409) T ss_pred hHHHHHHHHHHHHhhccCceEEeeCCccccchh-----hhcccCCCCCCCHHHHHHHH-HHHHhhCCcEEEEEEECCCCc Confidence 00 00 123334444433333221 111111 01122223333333333433 3332 2544322221111111 Q ss_pred hhh---cccchhhhhhcCCCccEEEE----eecceeeee-----cccccccc-chhhHH--HHHHHHHhhhhh-hccCce Q lcl|NC_001629. 75 AQR---VNADQFNILVREPNRRQVTI----RTSDYEMLL-----NPFYGANP-QRFGVM--FGMASNGIGRRL-DSQAQI 138 (279) Q Consensus 75 ~~~---v~~d~fN~~v~~~~~~~vtl----P~SDV~iie-----NPf~~V~~-ee~t~M--Ld~aLnaI~~KL-eqqgsl 138 (279) |.. +..+.....+..+.+....+ ..+||.-|- +++++..+ +..... +..+......++ .+.+.. T Consensus 152 ~~~L~pl~p~~v~v~~~~~g~~~y~~~~~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p 231 (409) T protein:vir:83 152 PIRFRVVPPWLVNVELKKGARREYRIGGLNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVP 231 (409) T ss_pred EEEEEEECCcceEEEEcCCceEEEEEccccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Confidence 111 00000000011111111111 113333221 22344332 222222 334455555666 445557 Q ss_pred EEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHH------HHHHHHHhhcCCc Q lcl|NC_001629. 139 KIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDAN------LAIEIALSEYGMP 212 (279) Q Consensus 139 KifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die------~lkS~LySq~GIn 212 (279) .+.++.|-.. +++-+++.+++.++.. +.+-++...++.|-++.|.. +-+..|++ +.+++.+..|||| T Consensus 232 ~gil~~~~~l-s~e~~~~~~~~~~~~~--~~nag~~~il~~g~~~~~~~----~~s~~d~q~le~r~~~~~eIa~~fgVP 304 (409) T protein:vir:83 232 LYWLGVERRL-SETEAVDLMDRWIESR--SKYAGHPALVTGGATLNQAK----SMSAQDLSLMELTQFNEARIAILLGVP 304 (409) T ss_pred ceEeecCCCC-CHHHHHHHHHHHHHhh--CCccCccceecCCccccccc----CCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 8888887663 4555666777665532 33445566777777665431 12334554 4567788899999 Q ss_pred ccccc----c-ccc----cceehhhhhhhHHHHHHHhcccccc---hhhhhhhhhee---------------cc-cCccc Q lcl|NC_001629. 213 RELLY----G-QSN----EVTIIAFAIQKVLPLLKQHDKNIVF---NQENFVAYIST---------------TA-KGGKI 264 (279) Q Consensus 213 ekIL~----G-taT----eeqkiAyy~stV~PLLkQyek~lvf---~~E~fv~y~tt---------------ta-~gg~~ 264 (279) .-++- + .+| |++.++|+..+|.|++++.|.+|-. .+..+++|=.. ++ ..|- T Consensus 305 p~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~- 383 (409) T protein:vir:83 305 PFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPSPQHLELNRDDYTRPSLVERATAYKIMIEAGV- 383 (409) T ss_pred HHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEeehhhhhccCHHHHHHHHHHHHhCCC- Confidence 87772 2 233 8899999999999999998874432 11112222110 00 0111 Q ss_pred ccccccccCCCC----CCC Q lcl|NC_001629. 265 ESKSSSRDSEPL----GND 279 (279) Q Consensus 265 ~s~~~~~~~~~~----~~~ 279 (279) -+-..-|.-+-| |.| T Consensus 384 lT~NE~R~~~glpp~~ggd 402 (409) T protein:vir:83 384 MEPNEARAMERLHSEAAAV 402 (409) T ss_pred cCHHHHHHHhCCCCCCCCc Confidence 111111111111 111 No 90 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=94.38 E-value=0.0022 Score=35.17 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=95.1 Q ss_pred eeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeec--c---ccccccchh---hHHHHHHHHHhhhhhhcc Q lcl|NC_001629. 64 YRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLN--P---FYGANPQRF---GVMFGMASNGIGRRLDSQ 135 (279) Q Consensus 64 ~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieN--P---f~~V~~ee~---t~MLd~aLnaI~~KLeqq 135 (279) .|+=-.|--||-.+ ++. ..++.+.+++|-.||.-|-+ | .++..+=+. +-.++.+.....+++=.+ T Consensus 1 ~r~~~dg~~~y~~~-----~~~--~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~N 73 (219) T protein:vir:98 1 MRVCKDGNYKYLMK-----KSL--YDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSN 73 (219) T ss_pred CceeecCeEEEEEe-----cce--ecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 44444454444322 122 33445578888888877764 3 244443211 111333333444455334 Q ss_pred Cc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec-----cCCceeEEccCccccccHHHHHHH------HH Q lcl|NC_001629. 136 AQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI-----GSDDDIKQIQPDYSGSLQNDANLA------IE 203 (279) Q Consensus 136 gs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi-----d~geei~QLq~DYSts~~~die~l------kS 203 (279) |. ..+-++.+-..-+++-+++.++..++.. -+.+...+.++ +.|-+++.|. .+..|+.|+ ++ T Consensus 74 g~~p~gil~~~~~~l~~e~~~~~~~~~~~~~-g~~n~~~~~l~~~gg~~~G~~~~~~~-----~~~~d~qfle~rk~~~~ 147 (219) T protein:vir:98 74 GAHMGFILYSTDPDMTEEMEDEIAERIRDSK-GVGNFRSMFVNIAGGHPDGLKVIPIG-----DTGQKDEFANIKNISAQ 147 (219) T ss_pred CCCCceEEEeCCCCCCHHHHHHHHHHHHHhc-CcccccceeEecCCCCccceeEEEcc-----CCHHHHHHHHHHHhhHH Confidence 44 5555655432234445555555544321 11122233343 3344565553 233455554 56 Q ss_pred HHHhhcCCccccc----ccc----cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccc-cccccCC Q lcl|NC_001629. 204 IALSEYGMPRELL----YGQ----SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESK-SSSRDSE 274 (279) Q Consensus 204 ~LySq~GInekIL----~Gt----aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~-~~~~~~~ 274 (279) ..+.-||||.-++ +++ -.|++.++|+..++.|+++.+|-+| +..+... .+=++.=+ -+.+|-. T Consensus 148 eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~l------n~~~~~~--~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 148 DVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESI------NSDYEIK--SALKVNFKQPEKRDKN 219 (219) T ss_pred HHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHh------hhhhcCC--CccEEeecCcccccCC Confidence 7899999999886 233 3478889999999999999988744 2322221 01011111 0111111 No 91 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=92.84 E-value=0.008 Score=32.08 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=109.6 Q ss_pred Cccccc--------------chhhcccee-----------e--eeeecCcc---hhHHH---HHHHHHHHHhhcccchhh Q lcl|NC_001629. 1 MSLFNL--------------SRRAEDVSF-----------S--TFTVQDPT---TDLLL---GKLLGLVSYFDNVDYSEA 47 (279) Q Consensus 1 ~~~~~~--------------~~~~~~~~~-----------~--~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~ 47 (279) +++-.+ ..++..++. . .+.+.+.. ++-.. ..+.-++..--|-..+.- T Consensus 70 ~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~ 149 (535) T protein:vir:10 70 LSTKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWR 149 (535) T ss_pred cCHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChh Confidence 111000 011122210 0 11111111 00000 011111111112111111 Q ss_pred h----hhhhhhhh-hhccce--eeeeehh-h--hhhhh---hhcccc----------hhhhhhcCCCccEEEEeecceee Q lcl|NC_001629. 48 S----KLEDLFFW-ALQGQE--VYRVWYG-G--FKYYA---QRVNAD----------QFNILVREPNRRQVTIRTSDYEM 104 (279) Q Consensus 48 ~----~~~~~~~~-~~~~~~--~~~~~~~-~--~~~y~---~~v~~d----------~fN~~v~~~~~~~vtlP~SDV~i 104 (279) . -++.+..- .+.|.. ++.++-+ | .+.|| ..|.+. .|.. -.+++..+++|-+||-. T Consensus 150 ~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~--~~~~~~~~~~~~~eiih 227 (535) T protein:vir:10 150 DTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQ--FVSETKSVKFSERNLTF 227 (535) T ss_pred HHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEE--EecCceeEEECcccEEE Confidence 1 11111111 111111 1112111 1 01111 112111 1111 12345567889999876 Q ss_pred ee-cccc-------cccc-chhhHHHHHHH--HHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHH----H Q lcl|NC_001629. 105 LL-NPFY-------GANP-QRFGVMFGMAS--NGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQL----A 168 (279) Q Consensus 105 ie-NPf~-------~V~~-ee~t~MLd~aL--naI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~Mqel----A 168 (279) |- ||.- +..+ +..-..|+.++ .....++ .+.+..++.++.+-. ...++.+++.++++...+- + T Consensus 228 ~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~-~~~~ls~e~~e~lk~~~~~~~~G~ 306 (535) T protein:vir:10 228 INYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQD-GDAQANQMMLAGIRRQWTSQGSGL 306 (535) T ss_pred EeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCC-CCcccCHHHHHHHHHHHHHHhcCc Confidence 63 3322 2211 12222233333 3333444 445558888888754 2333444444555544432 3 Q ss_pred HhcCCeeecc-CCceeEEccCccc-cccHHHHHHHHHHHHhhcCCccccc------------------ccccccceehhh Q lcl|NC_001629. 169 REFNGVSVIG-SDDDIKQIQPDYS-GSLQNDANLAIEIALSEYGMPRELL------------------YGQSNEVTIIAF 228 (279) Q Consensus 169 ~~~~GvtYid-~geei~QLq~DYS-ts~~~die~lkS~LySq~GInekIL------------------~GtaTeeqkiAy 228 (279) ++-+++.++. .|-++++|...=. ....+-..+.+.+.+..||||.-++ +|+..|.+..+| T Consensus 307 ~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~ 386 (535) T protein:vir:10 307 GGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESS 386 (535) T ss_pred ccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHH Confidence 3334456666 5779988874211 1111223346778899999997544 455568888899 Q ss_pred hhhhHHHHHHHhcccccc---hh-hhhh----------------hhheecccCcccccccccc---cCCCC-CCC Q lcl|NC_001629. 229 AIQKVLPLLKQHDKNIVF---NQ-ENFV----------------AYISTTAKGGKIESKSSSR---DSEPL-GND 279 (279) Q Consensus 229 y~stV~PLLkQyek~lvf---~~-E~fv----------------~y~ttta~gg~~~s~~~~~---~~~~~-~~~ 279 (279) ...++.|+++++|-+|-. .+ +..+ .+.....+||+ +-...| +-+|+ |.| T Consensus 387 ~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~r~~~~~~~~~g~l--T~NE~R~~~gl~piegGD 459 (535) T protein:vir:10 387 KDKGLTPLLSFIEQVINDKIMRYVDTDYRFSFTLGDAQDKLQEEQVWKLKLANGY--FINEYRKDHGLKTVDGLD 459 (535) T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCeEEEEeccccccCHHHHHHHHHHHHcCCC--CHHHHHHHhCCCCCCCcc Confidence 999999999997764421 11 0000 11111122442 222222 22333 222 No 92 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=91.13 E-value=0.017 Score=30.24 Aligned_cols=262 Identities=16% Similarity=0.155 Sum_probs=115.4 Q ss_pred Cccccc------------chhhccce-eeeeeecCcchhHHHHHHHH---------------HHHHhhc-ccchhhhhhh Q lcl|NC_001629. 1 MSLFNL------------SRRAEDVS-FSTFTVQDPTTDLLLGKLLG---------------LVSYFDN-VDYSEASKLE 51 (279) Q Consensus 1 ~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~ 51 (279) |+.|.. +.-.|-.. ...+ +..|-.-.-|.|++- |..-|++ -.+-.+..++ T Consensus 21 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~pp~~~~~la~l~~~~~~h~~~i~~k~n~l~~l~~~Pn~~~t~~~f~ 99 (346) T protein:vir:10 21 TEIFSFGDPIPVLDRADILNYLECSAMYEKW-YNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLS 99 (346) T ss_pred eEEEecCCcceecCchhHHHHHHHhhcCCce-EecCCCHHHHHHHHHhhhhcchhhhhhhhhHHHHHhCCCCCCCHHHHH Confidence 111111 10011000 0000 011111111222221 1122221 1111111221 Q ss_pred h-hhhhhhccceeeeeehhhh----hhh---hhhcccchh-h---hhhcCCCccEEEEeecceeeeecccc-----cccc Q lcl|NC_001629. 52 D-LFFWALQGQEVYRVWYGGF----KYY---AQRVNADQF-N---ILVREPNRRQVTIRTSDYEMLLNPFY-----GANP 114 (279) Q Consensus 52 ~-~~~~~~~~~~~~~~~~~~~----~~y---~~~v~~d~f-N---~~v~~~~~~~vtlP~SDV~iieNPf~-----~V~~ 114 (279) . .+-|.+.|.....+..++. +.+ |.+|.+..- | ..+...+.+.+++|-.||.-+-+|-. ++.+ T Consensus 100 ~~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~ 179 (346) T protein:vir:10 100 SFVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKGSIYHLLEPDINQDIYGLPQ 179 (346) T ss_pred HHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEEEEEEccCCeEEEEecccEEEecCCCCCCCeeeccH Confidence 1 1234455654333332221 122 344433221 1 12345566788999999987766533 2221 Q ss_pred c--hhhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCc--eeEEccC Q lcl|NC_001629. 115 Q--RFGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDD--DIKQIQP 188 (279) Q Consensus 115 e--e~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~ge--ei~QLq~ 188 (279) = -..++ +..+...-.++.=.+|. ..+.++++=..-+++-+++.++.+++..- +.+.+++.++..+- +=.++.| T Consensus 180 ~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~~~~~~g-~~n~~~~~vl~~~~~~~gi~~~p 258 (346) T protein:vir:10 180 YLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQLKQSKG-VGNFKNLFVHAPNGKKDGIQIIP 258 (346) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcC-ccccCceeEecCCCCccceeEEe Confidence 0 01111 33333333444433444 66666654223467777777777766432 34556677776542 2334555 Q ss_pred ccccccHHHHH----HHHHHHHhhcCCccccc----c--c--ccccceehhhhhhhHHHHHHHhcccccchhhhhhhhhe Q lcl|NC_001629. 189 DYSGSLQNDAN----LAIEIALSEYGMPRELL----Y--G--QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYIS 256 (279) Q Consensus 189 DYSts~~~die----~lkS~LySq~GInekIL----~--G--taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~t 256 (279) -=.++...|+. +.+...+..||||..++ . | ...|.+.++|+..+|+|++++.|- +. +-....++ T Consensus 259 is~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~~iee--~n-~~L~~e~i- 334 (346) T protein:vir:10 259 IADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKE--FN-QWLGQEVI- 334 (346) T ss_pred cCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH--HH-hhccccee- Confidence 43333344442 33667889999999887 1 1 223567789999999999999863 11 11111111 Q ss_pred ecccCcccccccccccCC Q lcl|NC_001629. 257 TTAKGGKIESKSSSRDSE 274 (279) Q Consensus 257 tta~gg~~~s~~~~~~~~ 274 (279) +.+-..-.|.+| T Consensus 335 ------~F~~~~ll~~~~ 346 (346) T protein:vir:10 335 ------KFKPSKLLQRTQ 346 (346) T ss_pred ------eechhhhcccCC Confidence 122222233333 No 93 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=89.51 E-value=0.026 Score=29.28 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=95.7 Q ss_pred Cccc---ccchhh-----------ccceeeeeeecCcchh-HHHHHHH-HHHHHhhcccchhhhh---hhhhhhhhhccc Q lcl|NC_001629. 1 MSLF---NLSRRA-----------EDVSFSTFTVQDPTTD-LLLGKLL-GLVSYFDNVDYSEASK---LEDLFFWALQGQ 61 (279) Q Consensus 1 ~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 61 (279) +++- .|.|.. ..+. ++|. ..|... --+-+++ -+. .|.|. |-+.-+ =+-+-+|-+... T Consensus 52 ~~~~~la~l~~~~~~h~~~i~~k~n~l~-~~~~-Pn~~lt~~~f~~~~~d~l-l~Gna-y~~~~rn~~G~~~~L~pl~~~ 127 (345) T protein:vir:37 52 VNRHALAKLPHQNAQHGGILHSRANMVS-SLYE-GGKALSRMDMRALCLNLI-QFGDV-GLLKVRNGFGQVVRLVPLSSL 127 (345) T ss_pred CCHHHHHHHhhcccccccceeeechHHH-hhcc-CCCCCCHHHHHHHHHHHH-hcCCe-EEEEEEcCCCcEEEEEEEcCc Confidence 1111 111111 1110 1221 111000 0000110 000 01110 111000 000111222222 Q ss_pred eeeeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecc-----ccccccchhhHH-----HHHHHHHhhhh Q lcl|NC_001629. 62 EVYRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNP-----FYGANPQRFGVM-----FGMASNGIGRR 131 (279) Q Consensus 62 ~~~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~ee~t~M-----Ld~aLnaI~~K 131 (279) .|-+.-.++.-|+.+- +. .....+.+++|-.||--|-+| .|++- +.... +..+...-.++ T Consensus 128 ~vr~~~d~~~~~~~~~------~~--~~~~g~~~~~~~~dVihir~~~~~~~~~Gls--~~~~a~~si~l~~~a~~~~~~ 197 (345) T protein:vir:37 128 YLRVRKDGGYSYLMKK------SL--YDTAQEIYRYDAKDIIFIKLYDPMQQVYGSP--DYVGGIQSALLNSDATVFRRR 197 (345) T ss_pred eeEEEEeCCeeEEEEE------eE--ecCCceEEEEccccEEEecCCCCCCCccccc--HHHHHHHHHHHHHHHHHHHHH Confidence 2222222222111110 00 122345678888888766443 23321 11111 22222223344 Q ss_pred hhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccC--CceeEEccCccccccHHHHH----HHHHH Q lcl|NC_001629. 132 LDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGS--DDDIKQIQPDYSGSLQNDAN----LAIEI 204 (279) Q Consensus 132 Leqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~--geei~QLq~DYSts~~~die----~lkS~ 204 (279) .=.+|. ..+-+..+-..-++|-+++.++++++... ..+..++.++.. +++=+++.|-=.++-.+|+. +.+.. T Consensus 198 ~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g-~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~d 276 (345) T protein:vir:37 198 YFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG-VGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQD 276 (345) T ss_pred HHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcC-cccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHH Confidence 433444 55556554223456666666666655322 223445555432 13334554432233333433 34556 Q ss_pred HHhhcCCccccc----cccc----ccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccc--cccc Q lcl|NC_001629. 205 ALSEYGMPRELL----YGQS----NEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESK--SSSR 271 (279) Q Consensus 205 LySq~GInekIL----~Gta----TeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~--~~~~ 271 (279) .+..||||..++ ++++ -|.+.+.|+..+|.|++++.+..+ ++.. . ..++-.|.=+ +-++ T Consensus 277 Ia~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~l------n~~~-~-~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 277 VLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETI------NQDP-E-IKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHh------hhhc-c-CCCcceEEecchhhcC Confidence 888999999987 2222 266778999999999999877633 2111 0 0011111111 1111 No 94 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=86.74 E-value=0.042 Score=28.15 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=94.6 Q ss_pred Cc--------------ccccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhc----ccchhhhhhhhhhhhhhccce Q lcl|NC_001629. 1 MS--------------LFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDN----VDYSEASKLEDLFFWALQGQE 62 (279) Q Consensus 1 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 62 (279) .. -+|+.+ ....+|..+.|-||.--- -.+|.+.++ -+|-+. =+|-+.|+ T Consensus 183 ~i~i~i~~~D~~~l~~PL~~~~-I~kg~~kgl~vldp~~~~-----~~~v~e~~~Dp~sp~fg~P------~~y~i~g~- 249 (765) T protein:vir:96 183 IALFVVESDDPDYYEKPFNPDG-IAPGSYKGISQIDPYWAM-----PQLTAESTADPSAEHFYEP------DFWIISGK- 249 (765) T ss_pred EEEEEecccCcchhhccccccc-cccceeeEEEEechhhcc-----cccchhccccccccccCcc------eeeeecCc- Confidence 11 112221 122356666666652100 011222221 111111 12333332 Q ss_pred eeeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeee---eccccccccchhhHHHHHHHHHhhhhhhc----- Q lcl|NC_001629. 63 VYRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEML---LNPFYGANPQRFGVMFGMASNGIGRRLDS----- 134 (279) Q Consensus 63 ~~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~ii---eNPf~~V~~ee~t~MLd~aLnaI~~KLeq----- 134 (279) ++-|-|| +++.-.++.-+ -++|.++ ++|.+.++.|..-+.- T Consensus 250 ---------~IH~SRl----------------i~~~g~~lpd~lk~~~~~~G~------Svlq~~yd~I~~~~~t~~~~a 298 (765) T protein:vir:96 250 ---------KYHRSHL----------------VVVRGPQPPDILKPTYIFGGI------PLTQRIYERVYAAERTANEAP 298 (765) T ss_pred ---------eeccceE----------------EEecCCCchhhhccccCccCc------cHHHHHHHHHHHHHHHHHHHH Confidence 2333332 22221221111 1223322 2344444444333211 Q ss_pred ----cCceEEEEecC---cccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHh Q lcl|NC_001629. 135 ----QAQIKIYWKTK---VSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALS 207 (279) Q Consensus 135 ----qgslKifikL~---i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LyS 207 (279) ..+++.+ +.+ ..++.+++. +|+..+ ...+...|+.+++.+|++.+++-+.|+ +.+=++....++.. T Consensus 299 ~Ll~k~~~~v~-k~~~~~~l~~~~~l~----~r~~~~-~~~r~n~g~~~id~ee~~e~~s~~lsg-l~d~l~~~~~~iAa 371 (765) T protein:vir:96 299 LLAMSKRTSTI-HVDVEKAIANEDAFN----ARLAFW-IANRDNHGVKVIGIDETMEQFDTNLSD-FDSVIMNQYQLVAA 371 (765) T ss_pred HHHHHhcccee-eechHhhhccHHHHH----HHHHHH-HHhcCCceeEEecCCcceeEEecccCC-HHHHHHHHHHHHHh Confidence 1222221 111 112333333 333333 334456799999999999999988885 56667888889999 Q ss_pred hcCCccccccccc------c-cceehhhhhh-------hHHHHHHHhcccccchhhhhhhhheecccCcccccccccccC Q lcl|NC_001629. 208 EYGMPRELLYGQS------N-EVTIIAFAIQ-------KVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDS 273 (279) Q Consensus 208 q~GInekIL~Gta------T-eeqkiAyy~s-------tV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~ 273 (279) .-+||--+|.|+. | |+...+||.+ .+-|+|+.+-+ +|-.. |+ +.. .-+-.- T Consensus 372 as~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~-----------li~~s--~~-i~~-d~~i~F 436 (765) T protein:vir:96 372 IAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYL-----------LLAKS--ES-IDV-QLEIVW 436 (765) T ss_pred hhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHh--cC-CCC-cceEEe Confidence 9999999998864 4 6677887773 34455554433 22211 11 111 001111 Q ss_pred CCCCCC Q lcl|NC_001629. 274 EPLGND 279 (279) Q Consensus 274 ~~~~~~ 279 (279) .||-.- T Consensus 437 npL~~~ 442 (765) T protein:vir:96 437 NPVDST 442 (765) T ss_pred CCCCCC Confidence 233211 No 95 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=85.37 E-value=0.053 Score=27.57 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=107.1 Q ss_pred Ccccccc-------hh-----hccceeeeeeecCcchhHH-HHHHHH------HHHH---------hhcccchhhhhhhh Q lcl|NC_001629. 1 MSLFNLS-------RR-----AEDVSFSTFTVQDPTTDLL-LGKLLG------LVSY---------FDNVDYSEASKLED 52 (279) Q Consensus 1 ~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~---------~~~~~~~~~~~~~~ 52 (279) ++.|... ++ .|-+....+ -.|.-++. |-+++- -.-| |..-.+-....++. T Consensus 36 ~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~~la~~~~~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~ 113 (368) T protein:vir:79 36 AEVFSFGDPVEVLDRRELLDYVECMRMGQW--YEPPMPWDGLARSFRAAAHHSSAVYVKRNILVSTFIPHPLLSRATFER 113 (368) T ss_pred eEEEEcCCceeecchhhHHHHHHHHhccch--hccCcCHHHHHHHHhhccccchhhhhhcchhhhhcCCCcCCCHHHHHH Confidence 2222111 11 111111101 01111110 112111 0011 11112111222222 Q ss_pred h-hhhhhccceeeeeehhhh----hhh---hhhcccchhhh--hhcCCCccEEEEeecceeeeecc-----ccccccc-- Q lcl|NC_001629. 53 L-FFWALQGQEVYRVWYGGF----KYY---AQRVNADQFNI--LVREPNRRQVTIRTSDYEMLLNP-----FYGANPQ-- 115 (279) Q Consensus 53 ~-~~~~~~~~~~~~~~~~~~----~~y---~~~v~~d~fN~--~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~e-- 115 (279) + +-|.+.|.-...+...+. +.+ |.+|.+..--. -.-.+..+.+++|-.||.-|-+| .|+.-+= T Consensus 114 l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~ 193 (368) T protein:vir:79 114 LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLNTYFFVQNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLS 193 (368) T ss_pred HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCCEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHH Confidence 1 223444554333333221 111 22332211000 01124456788999998766544 2333211 Q ss_pred hhhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec-----cCCceeEEccC Q lcl|NC_001629. 116 RFGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI-----GSDDDIKQIQP 188 (279) Q Consensus 116 e~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi-----d~geei~QLq~ 188 (279) -...+ +..+...-.+++=.+|. ..+.++++=..-+++-+++.++.+++. .-+.+.+++.++ +.|-+++.|.. T Consensus 194 a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~~~lk~~~~~~-~G~~N~g~~~vl~~~g~~~g~~~~pls~ 272 (368) T protein:vir:79 194 ALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDVDTLREAMKSA-KGPGNFRNLFMYAPNGKKDGIQLLPVSE 272 (368) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHh-cCCcccCceeEecCCCCccceeEEEcCC Confidence 01111 33333334455533454 555566542223455555555555542 333455667776 34445666532 Q ss_pred ccccccHHHH----HHHHHHHHhhcCCccccc----ccc----cccceehhhhhhhHHHHHHHhcccc---------cch Q lcl|NC_001629. 189 DYSGSLQNDA----NLAIEIALSEYGMPRELL----YGQ----SNEVTIIAFAIQKVLPLLKQHDKNI---------VFN 247 (279) Q Consensus 189 DYSts~~~di----e~lkS~LySq~GInekIL----~Gt----aTeeqkiAyy~stV~PLLkQyek~l---------vf~ 247 (279) ++...|+ ++.+...+..||||..++ +++ --|++.++|+..+|+|+++..+- + -|+ T Consensus 273 ---~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie~-ln~~l~~e~~rF~ 348 (368) T protein:vir:79 273 ---VAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLLA-INDWIGDEVVRFA 348 (368) T ss_pred ---CHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhccCcceeeec Confidence 2233333 233566899999999888 222 23677789999999999998762 1 112 Q ss_pred hhhhhhhheecccCcccccccccccC Q lcl|NC_001629. 248 QENFVAYISTTAKGGKIESKSSSRDS 273 (279) Q Consensus 248 ~E~fv~y~ttta~gg~~~s~~~~~~~ 273 (279) +.-+...-++ |++. .-+|+. T Consensus 349 ~~~l~~~D~~-a~a~-----~~~rsa 368 (368) T protein:vir:79 349 PYALGGHDQP-AAAP-----GGQRSA 368 (368) T ss_pred hhHhhccccc-ccCC-----cccccC Confidence 2222222122 1111 011111 No 96 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=84.93 E-value=0.057 Score=27.42 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=94.3 Q ss_pred Ccccccc---hhh-----------ccceeeeeeecCcc-hhHHHHHHHHHHHH--hhcccchhhhh---hhhhhhhhhcc Q lcl|NC_001629. 1 MSLFNLS---RRA-----------EDVSFSTFTVQDPT-TDLLLGKLLGLVSY--FDNVDYSEASK---LEDLFFWALQG 60 (279) Q Consensus 1 ~~~~~~~---~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~ 60 (279) +++-.|. |.. ..+ -++|. ..|. |---+.+++ .+| |.|. |-+.-. =+-+-.|-+.. T Consensus 52 ~~~~~la~~~~~~~~h~~~i~~k~n~l-~~~~~-Pn~~~t~~~f~~~v--~d~ll~Gna-y~~i~rn~~G~~~~L~pl~~ 126 (345) T protein:vir:37 52 VNRHALAKLPHQNAQHGGILHSRANMV-SATYE-GGKALSKMEMRALC--LNLIQFGDV-GLLKVRNGFGQVVRLVPLSS 126 (345) T ss_pred CCHHHHHHHhhcchhhcchhhhhhhHH-hhccC-CCCCCCHHHHHHHH--HHHHhcCCe-EEEEEECCCCCEEEEEEecC Confidence 2221111 111 111 01221 0110 000001110 000 1110 000000 00001112222 Q ss_pred ceeeeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeeccc-----cccccc--hhhHH-HHHHHHHhhhhh Q lcl|NC_001629. 61 QEVYRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPF-----YGANPQ--RFGVM-FGMASNGIGRRL 132 (279) Q Consensus 61 ~~~~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf-----~~V~~e--e~t~M-Ld~aLnaI~~KL 132 (279) ..|-|.-.|+.-|+-+... .....+.+++|-.||.-|-+|- +++-+= -..++ +..+...-.+|. T Consensus 127 ~~vr~~~d~~~~~~~~~~~--------~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~ 198 (345) T protein:vir:37 127 LYLRVHKDGGYSYLMKKSL--------YDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRY 198 (345) T ss_pred ceeEEeecCCeeEEEeeee--------eccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 2222222223222211110 1122457788888888775543 222110 01111 222222334455 Q ss_pred hccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec-cCC-ceeEEccCccccccHHHH----HHHHHHH Q lcl|NC_001629. 133 DSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI-GSD-DDIKQIQPDYSGSLQNDA----NLAIEIA 205 (279) Q Consensus 133 eqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi-d~g-eei~QLq~DYSts~~~di----e~lkS~L 205 (279) =.+|. ..+-++.+-..-+++-+++.++.+++...- .+...+-+. .+| ++=+++.|-=.++-.+|+ ++.+... T Consensus 199 f~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g~-~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI 277 (345) T protein:vir:37 199 FSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGV-GNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDV 277 (345) T ss_pred HhccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcCc-cccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHH Confidence 44565 333344332223455555555444443211 122223333 222 333444443334444455 3445668 Q ss_pred HhhcCCccccc----ccc----cccceehhhhhhhHHHHHHHhcccccc----hhhhhhhhheecccCcccccccccc Q lcl|NC_001629. 206 LSEYGMPRELL----YGQ----SNEVTIIAFAIQKVLPLLKQHDKNIVF----NQENFVAYISTTAKGGKIESKSSSR 271 (279) Q Consensus 206 ySq~GInekIL----~Gt----aTeeqkiAyy~stV~PLLkQyek~lvf----~~E~fv~y~ttta~gg~~~s~~~~~ 271 (279) +..||||..++ +++ .-|.+.+.|+..+|.|+++.++..+-. ....+++|- -.+-+| T Consensus 278 ~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~~~~~~i~F~----------~~~l~k 345 (345) T protein:vir:37 278 LTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFR----------EQNFAK 345 (345) T ss_pred HHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcceEEEC----------chhhcC Confidence 89999998887 112 126788899999999999998874421 111111111 111111 No 97 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=84.44 E-value=0.06 Score=27.27 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=104.1 Q ss_pred Cccccc-------chh-----hccceeeeeeecCcchhHHHHHHHHHH---------------HHhh-cccchhhhhhhh Q lcl|NC_001629. 1 MSLFNL-------SRR-----AEDVSFSTFTVQDPTTDLLLGKLLGLV---------------SYFD-NVDYSEASKLED 52 (279) Q Consensus 1 ~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~ 52 (279) |..|.. ++| .|-+.-.. -+.-|-.-.-|.+++-.- +-|. |-..+ ...++. T Consensus 28 ~~~~~~~~p~~v~~~~~~~~~~~~~~~~~-~~~pp~~~~~la~~~~~~~~h~~~l~~k~n~l~~~~~Pnp~~t-~~~f~~ 105 (351) T protein:vir:79 28 AEVFTFDDPTPVMNRAEILDYVECWSNGE-WFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLS-RHAFER 105 (351) T ss_pred eEEEEcCCceeecCcchhhhhhhhhhcCc-eecCCCCHHHHHHHHhhhHhhhhhhhhhhhHHhhcccCCCCCC-HHHHHH Confidence 111111 110 00000011 111122222233333211 1121 21111 112222 Q ss_pred h-hhhhhccceeeeeehhhh----hhhh---hhccc----chhhhhhcCCCccEEEEeecceeeeecc-----ccccccc Q lcl|NC_001629. 53 L-FFWALQGQEVYRVWYGGF----KYYA---QRVNA----DQFNILVREPNRRQVTIRTSDYEMLLNP-----FYGANPQ 115 (279) Q Consensus 53 ~-~~~~~~~~~~~~~~~~~~----~~y~---~~v~~----d~fN~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~e 115 (279) + +-+.+-|.-...+..++. +.+| ++|.+ +.|=. -.+..+.+++|..||.-|-+| .|++-+= T Consensus 106 ~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~--~~~~g~~~~~~~~eIihir~~~~~~~~yGl~~~ 183 (351) T protein:vir:79 106 WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVY--VNGWQERHEFEPDSVFQLVRPDINQEVYGLPEY 183 (351) T ss_pred HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCCeEEE--EecCceEEEEcCccEEEeCCCCCCCCcccccHH Confidence 1 112233443222221111 1111 12221 11111 224456788999999877444 3443211 Q ss_pred -h-hhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCC--ceeEEccCc Q lcl|NC_001629. 116 -R-FGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSD--DDIKQIQPD 189 (279) Q Consensus 116 -e-~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~g--eei~QLq~D 189 (279) . ..++ +..+...-.+++=.+|. ..+.++.+=..-+++-+++.++.+++. .-..+.+.+.++..+ ++=.++.|- T Consensus 184 ~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~-~G~~N~~~~~v~~~~g~~~gi~~~pl 262 (351) T protein:vir:79 184 LSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNA-KGPGNFRNVFMYAPGGKKDGIQLIPV 262 (351) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceEEEEc Confidence 0 1111 22333333455544555 444455432224566666666666543 223344555555321 222333332 Q ss_pred cccccHHHHHH----HHHHHHhhcCCccccc----cccc----ccceehhhhhhhHHHHHHHhcccccc--hhhhhhhhh Q lcl|NC_001629. 190 YSGSLQNDANL----AIEIALSEYGMPRELL----YGQS----NEVTIIAFAIQKVLPLLKQHDKNIVF--NQENFVAYI 255 (279) Q Consensus 190 YSts~~~die~----lkS~LySq~GInekIL----~Gta----TeeqkiAyy~stV~PLLkQyek~lvf--~~E~fv~y~ 255 (279) =.++-..|+.- .+...+..||||..++ .++. -|++.++|+..+|+|+++..|- +-- .+| +++|= T Consensus 263 ~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg~~-~~~F~ 340 (351) T protein:vir:79 263 SEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDE-VVTFD 340 (351) T ss_pred CCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcc-eeeeC Confidence 22333334433 3455899999999887 3332 2778899999999999998763 110 111 11221 Q ss_pred eecccCccccccccc Q lcl|NC_001629. 256 STTAKGGKIESKSSS 270 (279) Q Consensus 256 ttta~gg~~~s~~~~ 270 (279) . -+.+..-+.+ T Consensus 341 ~----~~llr~d~~a 351 (351) T protein:vir:79 341 D----YEIPPAPVAA 351 (351) T ss_pred h----hhhccccccC Confidence 1 1111111111 No 98 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=79.42 E-value=0.1 Score=25.96 Aligned_cols=223 Identities=17% Similarity=0.161 Sum_probs=99.0 Q ss_pred Cc--c---------------cccc-hhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccce Q lcl|NC_001629. 1 MS--L---------------FNLS-RRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQE 62 (279) Q Consensus 1 ~~--~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (279) .+ + ++|. .+-..-+|..|.|-||.- + -.+.+++.|..... | |+. T Consensus 156 ~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~--v------~p~~~~~~dp~sp~-----f-----g~P 217 (532) T protein:vir:94 156 GAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMW--L------SPNAYNATDPTLPS-----F-----YKP 217 (532) T ss_pred ceEEEEEeccCCccccccccccccccccccceeeEEEeechhe--e------cccccccccccccc-----c-----CCc Confidence 00 1 1111 112223455566666532 0 00112222221111 1 221 Q ss_pred -eeeeehhhhhhhhhhcccchhhhhhc-CCCccEEEEeecceeeeeccccccccchhhHHHHHHHHHh----------hh Q lcl|NC_001629. 63 -VYRVWYGGFKYYAQRVNADQFNILVR-EPNRRQVTIRTSDYEMLLNPFYGANPQRFGVMFGMASNGI----------GR 130 (279) Q Consensus 63 -~~~~~~~~~~~y~~~v~~d~fN~~v~-~~~~~~vtlP~SDV~iieNPf~~V~~ee~t~MLd~aLnaI----------~~ 130 (279) .|+| .+|.++.|-||-. |+. + -|+... |. +.|.+ .+++.+.++.| .. T Consensus 218 ~~y~v-~~g~~iH~SRli~--f~g--~~~p~~~~---~~-------~~~~G------~Svlq~~~~~l~~~~~t~~~~~~ 276 (532) T protein:vir:94 218 DSWIA-TSGKKIHSSRIHT--VVG--RPVGDMLK---AA-------YSFRG------VSISQLAMPYVDNWLRTRQSVSD 276 (532) T ss_pred eeEEE-ccCeeeccceEEE--ecC--CCchhhhc---cc-------ccccc------ccHHHHHHHHHHHHHHHHHHHHH Confidence 1222 3455555555432 211 0 000000 11 11221 12233333333 22 Q ss_pred hhhccCceEEEEecCcc-cchHHHHHHHHHHHHHHHHHHHhcCCeeeccC-CceeEEccCccccccHHHHHHHHHHHHhh Q lcl|NC_001629. 131 RLDSQAQIKIYWKTKVS-SGLKEVWDRIRERLTQQQQLAREFNGVSVIGS-DDDIKQIQPDYSGSLQNDANLAIEIALSE 208 (279) Q Consensus 131 KLeqqgslKifikL~i~-~~~ee~reqa~sRik~MqelA~~~~GvtYid~-geei~QLq~DYSts~~~die~lkS~LySq 208 (279) -+. ..+++. +|.+.. +...+..++..+|+..+. ..+..+|+.+++. +|++.+++-+.|+ +.+=++....++... T Consensus 277 l~~-~~~~~v-~k~~~a~~ls~~~~~~~~~r~~~~~-~~~~n~g~~~id~~~e~~e~~~~~lsg-l~~~l~~~~~~iAaa 352 (532) T protein:vir:94 277 TVK-QFSMTN-LATDMAQLLAPGGAQSLDARLQLFN-LYRDNRNIGALDKGTEEIQQTNTPLSG-LDSLQAQSQEQMAAV 352 (532) T ss_pred HHH-hcCCce-eeechHHhhcchhHHHHHHHHHHHH-hhcCCccceEEcCCCceeEEEecccCC-HHHHHHHHHHHHHhH Confidence 222 222222 222211 111234466666664443 3345689999985 6899999977775 466678889999999 Q ss_pred cCCcccccccc------cc-cceehhhhh-------hhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCC Q lcl|NC_001629. 209 YGMPRELLYGQ------SN-EVTIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSE 274 (279) Q Consensus 209 ~GInekIL~Gt------aT-eeqkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~ 274 (279) .|||--+|.|+ +| |+.+.+||. ..+-|+|+.+-+-|.++. +|.+...-+ -.-. T Consensus 353 ~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~------------~g~~~~d~~-~~f~ 419 (532) T protein:vir:94 353 SHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSE------------YGQIDPGLA-WEWS 419 (532) T ss_pred hCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCCCce-EEeC Confidence 99999999887 33 667788776 346677776555333321 232211100 0011 Q ss_pred CCCCC Q lcl|NC_001629. 275 PLGND 279 (279) Q Consensus 275 ~~~~~ 279 (279) ||-.- T Consensus 420 pL~~~ 424 (532) T protein:vir:94 420 PLMEL 424 (532) T ss_pred CCCCC Confidence 22111 No 99 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=78.34 E-value=0.12 Score=25.72 Aligned_cols=256 Identities=14% Similarity=0.146 Sum_probs=103.8 Q ss_pred Ccccccchhh-------------ccceeeeeeecCcchhHHHHHHHHHHHHhhcccchh--------------------- Q lcl|NC_001629. 1 MSLFNLSRRA-------------EDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSE--------------------- 46 (279) Q Consensus 1 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 46 (279) ||--.--+|+ ....-..|+.-||..=+--.-++-.+.-+.|-+|-| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 3221111111 112233455555542111001111111111211111 Q ss_pred -------------------hhhhhhhh-hhhhccceeeeeehhhh----hhh---hhhccc----chhhhhhcCCCccEE Q lcl|NC_001629. 47 -------------------ASKLEDLF-FWALQGQEVYRVWYGGF----KYY---AQRVNA----DQFNILVREPNRRQV 95 (279) Q Consensus 47 -------------------~~~~~~~~-~~~~~~~~~~~~~~~~~----~~y---~~~v~~----d~fN~~v~~~~~~~v 95 (279) ...++.+. -+.+-|.-...+..++. +.+ |.+|.+ +.|=. -.+....+ T Consensus 106 l~~k~n~l~~~~~Pnp~lT~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~--~~~~~~~~ 183 (376) T protein:vir:10 106 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNGFVY--VNGWQERH 183 (376) T ss_pred HHHHhHHHHhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCeEEE--EEcCCeEE Confidence 11111111 12233443222211111 111 112211 11111 12345577 Q ss_pred EEeecceeeeecc-----ccccccc--hhhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHH Q lcl|NC_001629. 96 TIRTSDYEMLLNP-----FYGANPQ--RFGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQ 166 (279) Q Consensus 96 tlP~SDV~iieNP-----f~~V~~e--e~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~Mqe 166 (279) ++|-.||.-|-+| .|++-+= -..++ +..+...-.+++=.+|. ..+.++.+=..-+++-+++.++.+++. . T Consensus 184 ~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~-~ 262 (376) T protein:vir:10 184 EFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNA-K 262 (376) T ss_pred EEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHh-c Confidence 8899998877544 2222110 01111 22232333455544555 444455432223455555555544432 2 Q ss_pred HHHhcCCeeeccC-----CceeEEccCccccccHHHHHHH------HHHHHhhcCCccccc----ccc----cccceehh Q lcl|NC_001629. 167 LAREFNGVSVIGS-----DDDIKQIQPDYSGSLQNDANLA------IEIALSEYGMPRELL----YGQ----SNEVTIIA 227 (279) Q Consensus 167 lA~~~~GvtYid~-----geei~QLq~DYSts~~~die~l------kS~LySq~GInekIL----~Gt----aTeeqkiA 227 (279) -..+.+++.++.. |-+++.|.- ++ .|++|+ +...+..||||..++ .++ -.|.+.++ T Consensus 263 G~~N~~~~~vl~~~g~~~Gi~~~pls~---~~--~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~ 337 (376) T protein:vir:10 263 GPGNFRNVFMYAPGGKKDGIQLIPVSE---VA--AKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARV 337 (376) T ss_pred CccccCceeEecCCCCccceEEEEccC---CH--HHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHH Confidence 2334455666532 334554432 23 444444 556888999999877 222 22677789 Q ss_pred hhhhhHHHHHHHhcccccc--hhhhhhhhheecccCccccccccc Q lcl|NC_001629. 228 FAIQKVLPLLKQHDKNIVF--NQENFVAYISTTAKGGKIESKSSS 270 (279) Q Consensus 228 yy~stV~PLLkQyek~lvf--~~E~fv~y~ttta~gg~~~s~~~~ 270 (279) |+..+|.|+++..+ ++.. -+| +++|-.- +.+..-+.+ T Consensus 338 f~~~~L~Pl~~~ie-eln~~L~~~-~~~F~~~----~Llr~d~ka 376 (376) T protein:vir:10 338 FGRNEIRPLQARFA-ELNDWLGEE-VVRFDDY----EIPPAPVAA 376 (376) T ss_pred HHHHHHHHHHHHHH-HHHhhcccc-ccccChh----HhhcccccC Confidence 99999999999986 3332 122 2222221 111111111 No 100 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=77.00 E-value=0.11 Score=25.81 Aligned_cols=227 Identities=14% Similarity=0.175 Sum_probs=104.5 Q ss_pred Ccccccchhhccceeeeeee--cCcchhHHH-HHHHHHHHHhhcccchhhhhhhhhhhhhhcc-----ceeeeeehhhhh Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTV--QDPTTDLLL-GKLLGLVSYFDNVDYSEASKLEDLFFWALQG-----QEVYRVWYGGFK 72 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 72 (279) ..||. + ++--+-+ +||..-|-. |.+-| |--.|+ |.++. +.+..-+||--+ T Consensus 97 ~rl~G---~----a~i~i~~d~~~~~~pl~~~~~~~~----~~v~~~-----------~~v~~~~~~~~dp~s~~fg~p~ 154 (437) T protein:vir:52 97 SSLYG---S----VGLLVVTDSQNTSAPLKPTERLKR----LIILPK-----------WKISPTGTKDDDVLSPNFGRYS 154 (437) T ss_pred ccccc---c----eEEEEEecCCCcccccccCCceeE----EEEech-----------hhccccccccccccccccCcce Confidence 11222 1 1111111 122211111 11111 111111 22221 122233344444 Q ss_pred hhhhhcccchhhhhhcCCCccEEEEeecceeeeec-cccccccchh---hHHHHHHHHHhhhhhhc---------cCceE Q lcl|NC_001629. 73 YYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLN-PFYGANPQRF---GVMFGMASNGIGRRLDS---------QAQIK 139 (279) Q Consensus 73 ~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieN-Pf~~V~~ee~---t~MLd~aLnaI~~KLeq---------qgslK 139 (279) +|- |+ +..+++.+..|.|-+|.+ |.- .++.. ..+|.+.++.|..-... ..+++ T Consensus 155 ~y~-----------v~-~~~~~~~iH~SRii~~~~~~~~--~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~ 220 (437) T protein:vir:52 155 EYS-----------IL-GGSQSITVHHSRLIILNANDAP--LSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID 220 (437) T ss_pred EEE-----------Ee-cCCcceeEccceeEEecCccCC--CccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 441 11 223456777777777753 211 01111 23455555555433211 12222 Q ss_pred EEEecCccc-ch-HHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcCCcccccc Q lcl|NC_001629. 140 IYWKTKVSS-GL-KEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLY 217 (279) Q Consensus 140 ifikL~i~~-~~-ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~GInekIL~ 217 (279) + ++++--+ .. ....+...+|...+- ..+..+|+..++.+|++.+++-+.| ...+=++....++....+||.-+|. T Consensus 221 v-~k~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~e~~~~~~s-gl~~~l~~~~~~iaaa~~iP~t~L~ 297 (437) T protein:vir:52 221 I-FKIAGLSDKIAAGMENEVASVISAVQ-EIKSATNSLLLDAENEYDRKELTFT-GLKDLLTEFRNAVAGAADMPVTILF 297 (437) T ss_pred c-eecchHHHHhcCCcHHHHHHHHHHHH-HhcCCCceEEEcCCcceEEEecCcC-CHHHHHHHHHHHHHHHhcCchhhhc Confidence 2 3332100 00 012344444544443 3355799999999999999987776 4556778888999999999999998 Q ss_pred cc-----cc-cceehhhhh-------hhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 218 GQ-----SN-EVTIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 218 Gt-----aT-eeqkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) |+ || |++..+||. ..+-|+|+.+-+ +|-..+ +|.+...- +-.-.||-.- T Consensus 298 G~s~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~-----------~i~~~~-~g~~~~~~-~~~f~pL~~~ 359 (437) T protein:vir:52 298 GQSVSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDP-----------LICNEL-FGGLPADW-WFEFVPLTTV 359 (437) T ss_pred CcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHh-cCCCCCcc-eEEeCCcCCc Confidence 88 43 578888776 345555555444 222222 23332111 1112233211 No 101 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=68.72 E-value=0.23 Score=24.05 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=94.3 Q ss_pred CcccccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhc----ccchhhhhhhhhhhhhhccceeeeeehhhhhhhhh Q lcl|NC_001629. 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDN----VDYSEASKLEDLFFWALQGQEVYRVWYGGFKYYAQ 76 (279) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 76 (279) -.-+|+.+ ...-++..|.|-||.---- .++.+.++ -+|-+. -+|-+.|+ ++-|- T Consensus 225 sqPLn~e~-I~kG~lkgl~vlDp~w~~p-----~~v~~~~~Dp~sp~yGkP------~~y~I~g~----------~IH~S 282 (862) T protein:vir:99 225 EKPFNPDG-ITPGSYRGISQIDPYWMMP-----MLTAESTADPSSQFFYEP------EFWIISGQ----------KYHRS 282 (862) T ss_pred hcCcCccc-ccccceeEEEEechhhhcc-----cccccccccccccccCCc------eeeeecCe----------eeccc Confidence 01122221 1222455566666532110 00111111 111111 13444443 23333 Q ss_pred hcccchhhhhhcC-CCccEEEEeec---ceeeeeccccccccchhhHHHHHHHHHhhhhhhccCceEEEEecCcccchHH Q lcl|NC_001629. 77 RVNADQFNILVRE-PNRRQVTIRTS---DYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKE 152 (279) Q Consensus 77 ~v~~d~fN~~v~~-~~~~~vtlP~S---DV~iieNPf~~V~~ee~t~MLd~aLnaI~~KLeqqgslKifikL~i~~~~ee 152 (279) ||= .|+- ++ |. +.=|.+ ++-+++.-+ +.+ .-++.+...+...+.. .+++.+ +.+ ++.+ T Consensus 283 Rli--if~g--~~vpd---~lk~ay~f~G~SvLe~iy-----d~L-~~~d~t~~saa~Ll~k-a~l~v~-ktd---~l~~ 344 (862) T protein:vir:99 283 HLI--IARG--PQPAD---ILKPTYIFGGIPLVQRIY-----ERV-YAAERTANEAPLLAMN-KRTTAI-HTD---TAKA 344 (862) T ss_pred eeE--EecC--CCchh---hhhccCCccCccHHHHHH-----HHH-HHHHHHHHHHHHHHHH-hcccee-ech---hHhh Confidence 331 1111 00 00 000111 111111100 000 1123333333333332 222222 211 1111 Q ss_pred HH--HHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcCCccccccccc------c-cc Q lcl|NC_001629. 153 VW--DRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLYGQS------N-EV 223 (279) Q Consensus 153 ~r--eqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~GInekIL~Gta------T-ee 223 (279) +- +...+|+.. +...+..+|+.+++.+|++.+++-+.| .+.+-++....++....+||--+|.|+. | |+ T Consensus 345 l~~ed~l~~r~~~-~~~~rdN~Gi~liD~eEe~e~ls~slS-GL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~ 422 (862) T protein:vir:99 345 IANEDKFIQRLMF-WVRYRDNHAVKVLGTDETMEQFDTSLA-DFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEF 422 (862) T ss_pred hccHHHHHHHHHH-HHhccCcceeEEecCCCceeEEecccC-ChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHH Confidence 11 233334332 333345689999999999999997777 4566788888899999999999998874 4 66 Q ss_pred eehhhhh-------hhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 224 TIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 224 qkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) ...+||. +.+.|+|+.+..-+..+ .| +.. .-+-.-.||-.- T Consensus 423 D~~nYyD~I~s~QE~~L~P~LerL~~li~~~-------------lg-~~~-d~~ieFnpL~~~ 470 (862) T protein:vir:99 423 ETISYHEELESIQEHVYMPFLQRHYLISRLS-------------LG-IQH-EIDVVMEPVASM 470 (862) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cC-CCC-cceEEeCCCCCC Confidence 7777776 35667777765411111 11 000 000011122211 No 102 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=66.97 E-value=0.26 Score=23.80 Aligned_cols=247 Identities=12% Similarity=0.087 Sum_probs=96.0 Q ss_pred Ccccccch--------------hhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhh---hhhhhhhhhcccee Q lcl|NC_001629. 1 MSLFNLSR--------------RAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASK---LEDLFFWALQGQEV 63 (279) Q Consensus 1 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 63 (279) +++-.|.+ ++.++. ++|.-..-.|---+.+++-=.-.|.|. |-+.-. =+-+-+|-+....| T Consensus 54 ~~~~~la~l~~a~~~h~s~i~~k~n~l~-~~~~Pn~~lt~~~f~~~~~d~ll~Gna-y~~~~rn~~G~~~~L~pl~~~~v 131 (340) T protein:vir:98 54 VSFSGLAKSLRSAVHHSSPIYVKRNVLA-STYIPHPLLSRQDFSRFALDYLVFGNA-FLEQRHSVTGQLIKLLTSPAKYT 131 (340) T ss_pred CCHHHHHHHHHhccccchhhhhhhhHHh-hccCCCCCCCHHHHHHHHHHHHhcCCe-EEEEEECCCCcEEEEEEeCCceE Confidence 21111111 111111 122111111111111111000011221 111100 00011222233333 Q ss_pred eeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeeccc-----cccccc--hhhH-HHHHHHHHhhhhhhcc Q lcl|NC_001629. 64 YRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPF-----YGANPQ--RFGV-MFGMASNGIGRRLDSQ 135 (279) Q Consensus 64 ~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf-----~~V~~e--e~t~-MLd~aLnaI~~KLeqq 135 (279) -+.+.|+.-|+ | ++..+.+++|-.||.-|-+|- |++-+= -..+ .+..+...-.++.=.+ T Consensus 132 r~~~~~~~~~~------------~-~~~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~N 198 (340) T protein:vir:98 132 RRGVDDSVFWF------------V-ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQN 198 (340) T ss_pred EEcccCcEEEE------------E-ecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 33333332221 1 234557788888987775542 221110 0011 1222222233444445 Q ss_pred Cc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCC--ceeEEccCccccccHHHHH----HHHHHHHhh Q lcl|NC_001629. 136 AQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSD--DDIKQIQPDYSGSLQNDAN----LAIEIALSE 208 (279) Q Consensus 136 gs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~g--eei~QLq~DYSts~~~die----~lkS~LySq 208 (279) |. -.+-+..+=..-+++-+++.++.+++. .-..+.+.+.++..+ ++=+++.|-=.++-.+|+. +.+...+.. T Consensus 199 Ga~pg~il~~~~~~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a 277 (340) T protein:vir:98 199 GAHAGYIMYVTDPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDA 277 (340) T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHH Confidence 55 333344432224455555555555442 222334455555322 2223343332233333333 335567889 Q ss_pred cCCccccc----ccc----cccceehhhhhhhHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 209 YGMPRELL----YGQ----SNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 209 ~GInekIL----~Gt----aTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) ||||..++ +++ --|++.++|+..+|.|+++..|- + ++-...+. .+. .+.+-+.-| T Consensus 278 ~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~--n~~L~~e~-------~rF------~~~~l~~~d 340 (340) T protein:vir:98 278 HRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-V--NDWLGMEV-------IRF------KEYTLDNPE 340 (340) T ss_pred hCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-H--Hhcccccc-------ccc------CccccccCC Confidence 99999887 222 22788899999999999998762 1 11100000 011 111111122 No 103 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=65.89 E-value=0.28 Score=23.65 Aligned_cols=260 Identities=14% Similarity=0.124 Sum_probs=98.3 Q ss_pred Cccccc-------chh-----hccceeeeeeecCcchhHHHHHHHHH------H---------HHhhcccchhhhhhhhh Q lcl|NC_001629. 1 MSLFNL-------SRR-----AEDVSFSTFTVQDPTTDLLLGKLLGL------V---------SYFDNVDYSEASKLEDL 53 (279) Q Consensus 1 ~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~~~~~~ 53 (279) |..|.. ++| .|-+.-.. -+.-|-.-.-|.+++-. + +-|..-++-....++.+ T Consensus 28 ~~~~~~~~p~~v~~~~~~~~~~~~~~~~~-~~~pp~~~~~la~~~~~~~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~ 106 (351) T protein:vir:78 28 AEVFTFDDPTPVMNRAEILDYVECWSNGE-WFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERW 106 (351) T ss_pred eEEEEcCCceeecCcchhhhhhhhhccCc-eecCCCCHHHHHHHHhhhHhhhhhhhhhhhHHhhcccCCCCCCHHHHHHH Confidence 111111 110 00000010 11112222223343311 1 11221111112222222 Q ss_pred hh-hhhccceeeeeehhhh----hhh---hhhccc----chhhhhhcCCCccEEEEeecceeeeecc-----ccccccch Q lcl|NC_001629. 54 FF-WALQGQEVYRVWYGGF----KYY---AQRVNA----DQFNILVREPNRRQVTIRTSDYEMLLNP-----FYGANPQR 116 (279) Q Consensus 54 ~~-~~~~~~~~~~~~~~~~----~~y---~~~v~~----d~fN~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~ee 116 (279) .+ +.+-|.....+...+. +.+ |..|.+ +.|= ...+..+.+++|-.||.-|-+| .|++-+=. T Consensus 107 ~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~ 184 (351) T protein:vir:78 107 ALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFV--YVNGWQERHEFAPDSVFQLVRPDINQEVYGLPEYL 184 (351) T ss_pred HHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCCeEE--EEecCCeEEEEccccEEEEcCCCCCCCcccccHHH Confidence 21 2223432111111110 000 111111 1111 1223455778888888766544 33321110 Q ss_pred --hhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCC--ceeEEccCcc Q lcl|NC_001629. 117 --FGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSD--DDIKQIQPDY 190 (279) Q Consensus 117 --~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~g--eei~QLq~DY 190 (279) ..++ +..+-..-.++.=.+|. ..+.++.+=..-+++-+++.++.+++. .-..+.+.+-++..+ ++=.++.|-= T Consensus 185 ~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~-~G~~N~~~~~v~~~~g~~~g~k~~pls 263 (351) T protein:vir:78 185 SSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNA-KGPGNFRNVFMYAPGGKKDGIQLIPVS 263 (351) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHh-cCcccccceeeecCCCCccceeEEEcC Confidence 1111 22222223344433444 444455431123455555555544432 222344455555322 3333444422 Q ss_pred ccccHHHHHH----HHHHHHhhcCCccccc----ccc----cccceehhhhhhhHHHHHHHhcccccc--hhhhhhhhhe Q lcl|NC_001629. 191 SGSLQNDANL----AIEIALSEYGMPRELL----YGQ----SNEVTIIAFAIQKVLPLLKQHDKNIVF--NQENFVAYIS 256 (279) Q Consensus 191 Sts~~~die~----lkS~LySq~GInekIL----~Gt----aTeeqkiAyy~stV~PLLkQyek~lvf--~~E~fv~y~t 256 (279) .++...|+.- .+...+..||||..++ .++ -.|.+.++|+..+|+|+++..+- +.- .+|. ++|-. T Consensus 264 ~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~~~-~~F~~ 341 (351) T protein:vir:78 264 EVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDEV-VRFDD 341 (351) T ss_pred CChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccc-eecCh Confidence 2233444422 3445888999999887 222 23667789999999999999863 221 1221 22221 Q ss_pred ecccCccccccc Q lcl|NC_001629. 257 TTAKGGKIESKS 268 (279) Q Consensus 257 tta~gg~~~s~~ 268 (279) ..---|- +|| T Consensus 342 ~~Llr~d--~ka 351 (351) T protein:vir:78 342 YEIPPAP--VAA 351 (351) T ss_pred hhhcccc--ccC Confidence 1111111 111 No 104 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=64.76 E-value=0.29 Score=23.49 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=102.2 Q ss_pred Ccccccch--------------hhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhh---hhhhhhhhhcccee Q lcl|NC_001629. 1 MSLFNLSR--------------RAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASK---LEDLFFWALQGQEV 63 (279) Q Consensus 1 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 63 (279) +++-.|.+ |.. .-.++| .|..+.+ -++.-=...|.|. |-+.-+ -+-+-+|-+....| T Consensus 53 ~~~~~La~l~~~~~~h~~~L~~k~N-~~~~~f---~~~~~~~-~~~~~d~ll~GNa-y~~~~rn~~G~~~~L~pl~~~~v 126 (337) T protein:vir:78 53 IDRKGLAKVARANAHHGAILMARRN-MVAGRF---TNQRATI-TAFVHNYLQFGDG-GLLKLRNSFGQVVGLHPLSSVYL 126 (337) T ss_pred CCHHHHHHHhhcchhhhhHHHhhhc-cccccC---cCcHHHH-HHHHHHHHhhCCe-EEEEEECCCCcEEEEEEeCCcee Confidence 22222211 111 111222 2322222 2221111113332 222100 01122344444444 Q ss_pred eeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecc-----ccccccc-h-hhHH-HHHHHHHhhhhhhcc Q lcl|NC_001629. 64 YRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNP-----FYGANPQ-R-FGVM-FGMASNGIGRRLDSQ 135 (279) Q Consensus 64 ~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~e-e-~t~M-Ld~aLnaI~~KLeqq 135 (279) -+. -+|-.||-. ...+.+++|..||.-+-+| .|++.+= . ..++ +..+...-.++.=.+ T Consensus 127 ~~~-~d~~~~~~~-------------~~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~N 192 (337) T protein:vir:78 127 RRR-EDGCFVYLQ-------------QGKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLN 192 (337) T ss_pred Eee-eCCeEEEEE-------------cCCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 332 233333311 1234677888888766544 2332211 1 1111 222222233444345 Q ss_pred Cc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeecc-----CCceeEEccCccccccHHHHH----HHHHHH Q lcl|NC_001629. 136 AQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIG-----SDDDIKQIQPDYSGSLQNDAN----LAIEIA 205 (279) Q Consensus 136 gs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid-----~geei~QLq~DYSts~~~die----~lkS~L 205 (279) |. ..+.+..+=..-+++-+++.++.+++.. -..+.+++.++. .|-++..|.. ++..+|+. +-+... T Consensus 193 Ga~p~~il~~~~~~l~~e~~~~lk~~~~~~~-G~~n~~~~~v~~~~g~~~Gi~~~pis~---~~~d~qfle~k~~s~~eI 268 (337) T protein:vir:78 193 GAHMGFIFYATDPNMDDDTEEEMKEMIANSK-GVGNFRSMFVNIPDGKPDGIKLIPVGD---IATKDEFAAIKGITAQDV 268 (337) T ss_pred cCCCceeEEcCCCCCCHHHHHHHHHHHHHhc-CcccccceEEEcCCCCccceeEEEcCC---ChhHHHHHHHHHHhHHHH Confidence 55 5555554322235555566665555432 223445566653 2334444433 34444432 234468 Q ss_pred HhhcCCccccc----c---ccc--ccceehhhhhhhHHHHHHHhcccccc---hhhhhhhhheecccCccc Q lcl|NC_001629. 206 LSEYGMPRELL----Y---GQS--NEVTIIAFAIQKVLPLLKQHDKNIVF---NQENFVAYISTTAKGGKI 264 (279) Q Consensus 206 ySq~GInekIL----~---Gta--TeeqkiAyy~stV~PLLkQyek~lvf---~~E~fv~y~ttta~gg~~ 264 (279) +..||||..++ + |++ -|.+.++|+..+|.|+++..|-.+-. ...-|+.|=-+.+.+ + T Consensus 269 a~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~ll~~~~~~~f~~~~~~~--~ 337 (337) T protein:vir:78 269 LTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAGLPRALWVTFRETIGAA--V 337 (337) T ss_pred HHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhceecccccccc--C Confidence 89999998876 2 232 25666799999999999987764422 122233332221111 1 No 105 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=61.64 E-value=0.15 Score=25.15 Aligned_cols=257 Identities=13% Similarity=0.099 Sum_probs=92.5 Q ss_pred Ccccccch---------hhccceeeeeee---cCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeeh Q lcl|NC_001629. 1 MSLFNLSR---------RAEDVSFSTFTV---QDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWY 68 (279) Q Consensus 1 ~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (279) .--+++.+ |.-..+.--.-+ +++.+-|-.+ |-+.+|--+|.....- ....+.+..-+| T Consensus 85 ~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~---g~i~~i~v~d~~~i~~-------~~~~~dp~sp~f 154 (435) T protein:vir:79 85 WDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPG---AQLEDIRVYDRYQITI-------HERETNARSVRY 154 (435) T ss_pred HHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccC---CceeeEEeechhhccc-------hhhccCCccccc Confidence 00000000 000000000000 1111111111 1111111111100000 000112222233 Q ss_pred hhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecccccccc---c---hhhHHHHHHHHHhhhhhhc---cC--- Q lcl|NC_001629. 69 GGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANP---Q---RFGVMFGMASNGIGRRLDS---QA--- 136 (279) Q Consensus 69 ~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~---e---e~t~MLd~aLnaI~~KLeq---qg--- 136 (279) |=-++|- | .+ .+.-.++.|-.|-+-+|.+--+.-.. + -.+.++.+.++.|..-+.. .+ T Consensus 155 g~P~~y~--v--~~------~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~ 224 (435) T protein:vir:79 155 GEPKLYK--I--SP------GGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLL 224 (435) T ss_pred CcceEEE--E--ec------CCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3333221 1 00 11112445666666666432211000 0 0111234444444333211 11 Q ss_pred ---ceEEEEecCc---ccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcC Q lcl|NC_001629. 137 ---QIKIYWKTKV---SSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYG 210 (279) Q Consensus 137 ---slKifikL~i---~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~G 210 (279) +++. ++.+- ..+...-...+.+|+..+...-...+++.....+|++.+++-+.|+ ..+=++....++....| T Consensus 225 ~~~~~~v-~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg-l~~~~~~~~~~iaaa~~ 302 (435) T protein:vir:79 225 RRKQQAV-WKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG-VPEFLQEKIDRIVALTG 302 (435) T ss_pred HHhcCcc-ccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC-HHHHHHHHHHHHHhhhC Confidence 1221 12210 0111222334555554444333333446665666789999988875 56668889999999999 Q ss_pred Ccccccccc------cc-cceehhhhhh-------hHHHHHHHhcccccchhhhhhhh---heecccC-ccccccccccc Q lcl|NC_001629. 211 MPRELLYGQ------SN-EVTIIAFAIQ-------KVLPLLKQHDKNIVFNQENFVAY---ISTTAKG-GKIESKSSSRD 272 (279) Q Consensus 211 InekIL~Gt------aT-eeqkiAyy~s-------tV~PLLkQyek~lvf~~E~fv~y---~ttta~g-g~~~s~~~~~~ 272 (279) ||--+|.|+ +| |+++.+||.+ .+-|+|+.+-+-++-++++-..| .+-|++= -.+..+-...+ T Consensus 303 IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li~~s~d~~~~f~pL~~~sekEkAei~~~~a~a~ 382 (435) T protein:vir:79 303 IHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFMISETEWSIEFEPLSVPSDKDKAEIMAKNVESV 382 (435) T ss_pred CCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCHHHHHHHHHHHHHHH Confidence 999999898 55 5667777762 46677776544222222221111 0000000 00000000000 Q ss_pred CCCCCCC Q lcl|NC_001629. 273 SEPLGND 279 (279) Q Consensus 273 ~~~~~~~ 279 (279) +--+++. T Consensus 383 ~~~~~~g 389 (435) T protein:vir:79 383 VKLKAEQ 389 (435) T ss_pred HHHHhcC Confidence 0000000 No 106 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=59.09 E-value=0.24 Score=24.02 Aligned_cols=225 Identities=14% Similarity=0.184 Sum_probs=91.1 Q ss_pred Ccccccch-------------hhccceeeeeeecCcc--hhHHHHHHHHHHHHhhc----ccchhhhhhhhhhhhhhccc Q lcl|NC_001629. 1 MSLFNLSR-------------RAEDVSFSTFTVQDPT--TDLLLGKLLGLVSYFDN----VDYSEASKLEDLFFWALQGQ 61 (279) Q Consensus 1 ~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 61 (279) ..++.+.. +-...+|..+.|-||. +-. ++.|.++ -||-+. -+|-++| T Consensus 177 ~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~-------~~~~~~~dp~sp~fg~P------~~y~v~g- 242 (537) T protein:vir:10 177 IALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPL-------LDAQASSNPVSMHFYEP------TYWLING- 242 (537) T ss_pred EEEEeecCcCCcccccccccccccccceeEEEEechhhcccc-------cchhhhccCCccccCCc------eeeeecC- Confidence 11111110 1122345566666662 111 1222211 111111 1333333 Q ss_pred eeeeeehhhhhhhhhhcccchhhhhhcC-CCccEEEEeecceeeeeccccccccchhhHHHHHHHHHhhhhhhccCceEE Q lcl|NC_001629. 62 EVYRVWYGGFKYYAQRVNADQFNILVRE-PNRRQVTIRTSDYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKI 140 (279) Q Consensus 62 ~~~~~~~~~~~~y~~~v~~d~fN~~v~~-~~~~~vtlP~SDV~iieNPf~~V~~ee~t~MLd~aLnaI~~KLeqqgslKi 140 (279) .++-|-||= .|+. ++ |....-...+.++-+++.-+ +.+ .-++.+...+..-+. ..+++. T Consensus 243 ---------~~iH~SRli--~f~g--~~~p~~~~~~~~~~G~Svlq~~~-----~~l-~~~~~t~~~~~~l~~-~~~~~v 302 (537) T protein:vir:10 243 ---------KKYHRSHLA--IYIN--DEVVDFLKPSYIYGGVPLPQQIM-----ERV-YAAERTANEGPMLAM-TKRQTV 302 (537) T ss_pred ---------eEecceeEE--EecC--CCCchhhhcccCcccccHHHHHH-----HHH-HHHHHHHHHHHHHHH-hcCCce Confidence 334444442 1211 00 11001011111111111100 000 002222222222222 222222 Q ss_pred EEecCcccchHHH--HHHHHHHHHHHHHHHHhcCCeeeccCC-ceeEEccCccccccHHHHHHHHHHHHhhcCCcccccc Q lcl|NC_001629. 141 YWKTKVSSGLKEV--WDRIRERLTQQQQLAREFNGVSVIGSD-DDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLY 217 (279) Q Consensus 141 fikL~i~~~~ee~--reqa~sRik~MqelA~~~~GvtYid~g-eei~QLq~DYSts~~~die~lkS~LySq~GInekIL~ 217 (279) + +. + +++++ .++..+|++.+. ..+..+|+.+++.+ |++.+++-+.|+ +.+=++....++....|||--+|. T Consensus 303 ~-k~--~-~~~~l~~~~~~~~r~~~~~-~~r~n~g~~~id~e~e~~e~~~~~lsg-l~~~l~~~~~~iAa~~~IP~t~L~ 376 (537) T protein:vir:10 303 L-KV--D-AAQVLANKQQFDETMSWWT-ATRDNYQVRVVDKDNEDVVQIDTTLND-LDKVIMNQYQLVCAIARTPAPKML 376 (537) T ss_pred e-ee--c-hHHhhcCHHHHHHHHHHHH-hhcCCcceeEecCCCceeEEEeccCCC-HHHHHHHHHHHHHhhhCCCceeec Confidence 2 11 1 11122 122334444433 33456899999985 999999977775 455677888889999999999998 Q ss_pred ccc-------ccceehhhhhh------hHHHHHHHhcccccchhhhhhhhheecccCcccccccccccCCCCCCC Q lcl|NC_001629. 218 GQS-------NEVTIIAFAIQ------KVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESKSSSRDSEPLGND 279 (279) Q Consensus 218 Gta-------TeeqkiAyy~s------tV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~~~~~~~~~~~~~ 279 (279) |+. .|+.+.+||.+ .+-|+|+.+.+-|..+ + +|.- . .-+-.-.||-.- T Consensus 377 G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~-~-----------~~~~-~-~~~i~f~pL~~~ 437 (537) T protein:vir:10 377 GTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRS-H-----------LRKR-I-RVKVEFPPMDAP 437 (537) T ss_pred cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------CCCC-c-ceEEEeCCCCCC Confidence 874 36677777743 2456666544322211 1 1110 0 000011122111 No 107 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=49.69 E-value=0.63 Score=21.68 Aligned_cols=264 Identities=10% Similarity=0.046 Sum_probs=100.1 Q ss_pred Ccccccchhhccce-------------eeeeeecCcchh-HHHHHHHHH---------------HHHhh-cccchhhhhh Q lcl|NC_001629. 1 MSLFNLSRRAEDVS-------------FSTFTVQDPTTD-LLLGKLLGL---------------VSYFD-NVDYSEASKL 50 (279) Q Consensus 1 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~-~~~~~~~~~~ 50 (279) ++.|......|-|. =..-..-.|-.+ .-|.+++-. .+-|. |-..+ ...+ T Consensus 17 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~k~N~l~~~~~Pn~~~t-~~~f 95 (348) T protein:vir:26 17 KSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKARANYVAGRFMNGGGLP-MYKM 95 (348) T ss_pred ceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhhhhhHHhhcccCCCCCC-HHHH Confidence 22222211111110 000001011111 112222210 01111 11111 1122 Q ss_pred hhhh-hhhhccceeeeeehhhh----hhh---hhhcccch---hhhhhcCCCccEEEEeecceeeeeccc-----ccccc Q lcl|NC_001629. 51 EDLF-FWALQGQEVYRVWYGGF----KYY---AQRVNADQ---FNILVREPNRRQVTIRTSDYEMLLNPF-----YGANP 114 (279) Q Consensus 51 ~~~~-~~~~~~~~~~~~~~~~~----~~y---~~~v~~d~---fN~~v~~~~~~~vtlP~SDV~iieNPf-----~~V~~ 114 (279) +.+. -+.+-|.-...+..++. +.+ |..|.+++ |=. + ..+...+++|-.||.-|-+|- |++-+ T Consensus 96 ~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~~~~-~-~~~g~~~~f~~~dIiHir~~~~~~~~~Gls~ 173 (348) T protein:vir:26 96 NSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGDFVQ-L-LRNNEQKVFKAKDVIFIPQYDPQQQIYGLPD 173 (348) T ss_pred HHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCcEEE-E-EecCeEEEEcCccEEEEcCCCCCCCcccccH Confidence 2111 12233443222222111 001 11111110 100 1 123356788888887665432 22211 Q ss_pred c--hhhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec--cCCceeEEccC Q lcl|NC_001629. 115 Q--RFGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI--GSDDDIKQIQP 188 (279) Q Consensus 115 e--e~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi--d~geei~QLq~ 188 (279) = -..++ ++.+...-.++.=.+|. ..+-+..+=..-++|-+++.++.+++. .-..+.+++.++ +++++=+++.| T Consensus 174 ~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~Gi~~~p 252 (348) T protein:vir:26 174 YLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASS-KGIGNFRSMFVNIPNGKEKGIQLIP 252 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHh-cCcccccceeEEcCCCCccceeEEE Confidence 0 11111 22222223334433454 333344322224555555555555442 222344455555 22233344444 Q ss_pred ccccccHHHHHHHH----HHHHhhcCCccccc----cccc----ccceehhhhhhhHHHHHHHhcccccchhhhhhhhhe Q lcl|NC_001629. 189 DYSGSLQNDANLAI----EIALSEYGMPRELL----YGQS----NEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAYIS 256 (279) Q Consensus 189 DYSts~~~die~lk----S~LySq~GInekIL----~Gta----TeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y~t 256 (279) -=.++-.+|+.-+| ...+..||||..++ ++++ -|++.+.|+..+|.|+++..+-. ++..... T Consensus 253 is~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~------ln~~l~~ 326 (348) T protein:vir:26 253 VGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDA------VNNDPEI 326 (348) T ss_pred ccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH------HhhhhCC Confidence 33455556664444 45899999999886 2222 36778999999999999988753 3322211 Q ss_pred ecccCccccccc----ccccCCCC Q lcl|NC_001629. 257 TTAKGGKIESKS----SSRDSEPL 276 (279) Q Consensus 257 tta~gg~~~s~~----~~~~~~~~ 276 (279) ..+-.+.-+- -+-|..-+ T Consensus 327 --~~~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 327 --PDNLKLKFNLNPGVESANGSAV 348 (348) T ss_pred --CCccEEEEecCcccccchhhcC Confidence 1111221111 01111111 No 108 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=49.33 E-value=0.059 Score=27.33 Aligned_cols=255 Identities=13% Similarity=0.155 Sum_probs=100.0 Q ss_pred Ccccccc---------hhhccceeeeeeecCc---chhHHH-HHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeee Q lcl|NC_001629. 1 MSLFNLS---------RRAEDVSFSTFTVQDP---TTDLLL-GKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVW 67 (279) Q Consensus 1 ~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (279) ..-+++. .|.-..+.-.+-|.|+ .+-|-. |.+-|+ ..||-...+- ....+.+..-+ T Consensus 73 ~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l-~v~d~~~i~~----------~~~~~dp~s~~ 141 (422) T protein:vir:10 73 WDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETV-RVYDRTQVKV----------QTREENPRNAR 141 (422) T ss_pred HHHhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeE-Eeeccccccc----------hhcccCccccc Confidence 0000000 0000111111222111 111100 111111 0111100000 00001222223 Q ss_pred hhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeec-----------cccccc-cch-h-h--HHHHHHHHHhhhh Q lcl|NC_001629. 68 YGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLN-----------PFYGAN-PQR-F-G--VMFGMASNGIGRR 131 (279) Q Consensus 68 ~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieN-----------Pf~~V~-~ee-~-t--~MLd~aLnaI~~K 131 (279) ||=-++|- |+ ..+..+.+.|=.|-+-+|.+ +|++.- .++ + . .-++.+...+..- T Consensus 142 fg~P~~y~--v~--------~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l 211 (422) T protein:vir:10 142 FGEPLTYR--IT--------TNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQL 211 (422) T ss_pred cCcceEEE--Ee--------cCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHH Confidence 33333320 10 01111223344444444422 222211 111 0 0 0022222232222 Q ss_pred hhccCceEEEEecCc---ccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhh Q lcl|NC_001629. 132 LDSQAQIKIYWKTKV---SSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSE 208 (279) Q Consensus 132 LeqqgslKifikL~i---~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq 208 (279) +... +++. ++.+- -.+...-..++.+|.+.+...-...+++..++.+|++.+++-+.|+ +.+=++....++... T Consensus 212 ~~~~-~~~v-~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg-l~~~~~~~~~~iaaa 288 (422) T protein:vir:10 212 LKRK-QQAV-WKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG-IDAFLDKKFDRIVAL 288 (422) T ss_pred HHHh-cccc-ccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC-hHHHHHHHHHHHHhh Confidence 2221 2222 12221 1122333445666766666554456778888888999999988886 566688889999999 Q ss_pred cCCccccccccc-------ccceehhhhh-------hhHHHHHHHhcccccchhhhhhhh---he--------------- Q lcl|NC_001629. 209 YGMPRELLYGQS-------NEVTIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAY---IS--------------- 256 (279) Q Consensus 209 ~GInekIL~Gta-------TeeqkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y---~t--------------- 256 (279) .+||--+|.|+. -|+.+.+||. ..+-|+|+.+-+-|+.++++-..| .+ T Consensus 289 ~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~~s~~~~~~f~pL~~~sekekaei~~~~a~ 368 (422) T protein:vir:10 289 SGIHEIILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIVNAEEWSVEFNPLAQESSKDKAEILEKNVN 368 (422) T ss_pred hCCCeeeeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEEeCCCCCCCHHHHHHHHHHHHH Confidence 999999998883 3566777776 467888887665454443321111 00 Q ss_pred ---ecccCcccccc------cccccCCCCCCC Q lcl|NC_001629. 257 ---TTAKGGKIESK------SSSRDSEPLGND 279 (279) Q Consensus 257 ---tta~gg~~~s~------~~~~~~~~~~~~ 279 (279) +-...|-+.-. ..+-+...++.+ T Consensus 369 a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 400 (422) T protein:vir:10 369 SIAALIAAGAMDIDEARDTLRTIAPEVKINDG 400 (422) T ss_pred HHHHHHhcCCCCHHHHHHHhhhhcccccCCCC Confidence 00011211110 000011111111 No 109 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=48.51 E-value=0.67 Score=21.55 Aligned_cols=255 Identities=13% Similarity=0.108 Sum_probs=99.6 Q ss_pred Ccccc-------cchh-----hccceeeeeeecCcchhH-HHHHHHHH---------------HHHhhcccchhhhhhhh Q lcl|NC_001629. 1 MSLFN-------LSRR-----AEDVSFSTFTVQDPTTDL-LLGKLLGL---------------VSYFDNVDYSEASKLED 52 (279) Q Consensus 1 ~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 52 (279) +..|. |+.| .|-+.-.. .-.|.-++ -|.+++-. ++-|..-.+--...++. T Consensus 31 ~~~~~~~~p~~v~~~~~~~~y~~~~~~~~--~~~pp~~~~~la~~~~~~~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~ 108 (350) T protein:vir:11 31 AEAFTFGDPMPVLDGRGILDYLECWPNGR--WYEPPLSMEGLAKSVGSSVYLQSGLKFKRNMLAKTFIPHRLLSRATFEQ 108 (350) T ss_pred eEEEEeCCceeecCcchhhHHHHHhhcCc--cccCCCCHHHHHHHHhhhhhhccchhhhhhhhhhcccCCCCCCHHHHHH Confidence 22222 1111 00000000 00111111 12222211 01111111111111221 Q ss_pred h-hhhhhccceeeeeehhhh----hhhh---hhcccchhhh--hhcCCCccEEEEeecceeeeeccc-----cccccc-h Q lcl|NC_001629. 53 L-FFWALQGQEVYRVWYGGF----KYYA---QRVNADQFNI--LVREPNRRQVTIRTSDYEMLLNPF-----YGANPQ-R 116 (279) Q Consensus 53 ~-~~~~~~~~~~~~~~~~~~----~~y~---~~v~~d~fN~--~v~~~~~~~vtlP~SDV~iieNPf-----~~V~~e-e 116 (279) + +-|.+-|.-...+..++. +.+| ..|.+..-.. ..-.+....+++|-.||.-|-+|- |++-+= . T Consensus 109 ~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~ 188 (350) T protein:vir:11 109 FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLETFYQVRSWKDEHEFEKGSVIQLREADINQEIYGVPEWFC 188 (350) T ss_pred HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCCeEEEEeeCCeEEEECcccEEEeCCCCCCCCcccccHHHH Confidence 1 122333544333322221 1111 1121111000 001234557888989987665442 332211 0 Q ss_pred -hhHH-HHHHHHHhhhhhhccCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCC--ceeEEccCccc Q lcl|NC_001629. 117 -FGVM-FGMASNGIGRRLDSQAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSD--DDIKQIQPDYS 191 (279) Q Consensus 117 -~t~M-Ld~aLnaI~~KLeqqgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~g--eei~QLq~DYS 191 (279) ..++ +..+...-.++.=.+|. ..+.++.+=..-+++-+++.++.+++. .-..+.+.+.++..+ ++=+++.|-=. T Consensus 189 a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~-~G~~N~~~~~v~~~~g~~~g~~~~pl~~ 267 (350) T protein:vir:11 189 ALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTA-KGPGNFRNLFVYAPNGKKEGIQLIPVSE 267 (350) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHh-cCccccCceeeecCCCCccceEEEEcCC Confidence 1111 23333333445533454 555566542223455555555554432 222344455555432 33345555222 Q ss_pred cccHHHHH----HHHHHHHhhcCCccccc----ccc--c--ccceehhhhhhhHHHHHHHhccccc-c-hhhh--hhhhh Q lcl|NC_001629. 192 GSLQNDAN----LAIEIALSEYGMPRELL----YGQ--S--NEVTIIAFAIQKVLPLLKQHDKNIV-F-NQEN--FVAYI 255 (279) Q Consensus 192 ts~~~die----~lkS~LySq~GInekIL----~Gt--a--TeeqkiAyy~stV~PLLkQyek~lv-f-~~E~--fv~y~ 255 (279) ++-.+|+. +.+...+..||||..++ +++ . -|.+.+.|+..+|+|+++.++- +. + .+|. |..|- T Consensus 268 ~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~~~F~~~~ 346 (350) T protein:vir:11 268 VAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEVVRFAQFD 346 (350) T ss_pred ChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccccccCccc Confidence 22223322 34456888999999777 322 2 2677899999999999999863 10 1 1110 11110 Q ss_pred eecccCcc Q lcl|NC_001629. 256 STTAKGGK 263 (279) Q Consensus 256 ttta~gg~ 263 (279) ..|- T Consensus 347 ----~~~l 350 (350) T protein:vir:11 347 ----APGL 350 (350) T ss_pred ----ccCC Confidence 0111 No 110 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=48.07 E-value=0.061 Score=27.26 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=95.8 Q ss_pred Ccccccc---------hhhccceeeeeeecCcc--hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeeeeehh Q lcl|NC_001629. 1 MSLFNLS---------RRAEDVSFSTFTVQDPT--TDLLLGKLLGLVSYFDNVDYSEASKLEDLFFWALQGQEVYRVWYG 69 (279) Q Consensus 1 ~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (279) .--+++. .|.-..+.-.+-|.|+. ..-+.++ |-+.+|.-+|....+. -.| -+....-+|| T Consensus 74 ~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~--g~l~~l~v~d~~~~~~----~~~---~~dp~s~~fg 144 (427) T protein:vir:10 74 WDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPG--AKLEGVRVYDRFAITV----EKR---VTNARSPRYG 144 (427) T ss_pred HHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCC--cceeEEEEechhcccc----ccc---ccCccccccC Confidence 0000000 00001111112222211 0000000 0000000000000000 000 0001111122 Q ss_pred hhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeeccccccccc----h--hhHHHHHHHHHhhhhh---hccC---- Q lcl|NC_001629. 70 GFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNPFYGANPQ----R--FGVMFGMASNGIGRRL---DSQA---- 136 (279) Q Consensus 70 ~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNPf~~V~~e----e--~t~MLd~aLnaI~~KL---eqqg---- 136 (279) =-++|- |+ ..+.-+.+.|-.|-+-+|.+--+.-... - .+.+..+.++.|..-+ .+.+ T Consensus 145 ~P~~y~--v~--------~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~ 214 (427) T protein:vir:10 145 EPEIYK--VS--------PGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILR 214 (427) T ss_pred cceEEE--Ee--------cCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHH Confidence 111110 00 0111233455555555553222100000 0 0111122222222221 1111 Q ss_pred --ceEEEEecC-cc--cchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHHHHHHHhhcCC Q lcl|NC_001629. 137 --QIKIYWKTK-VS--SGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLAIEIALSEYGM 211 (279) Q Consensus 137 --slKifikL~-i~--~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~lkS~LySq~GI 211 (279) +++. +|.+ .. ++......++.+|...+...-...+++..++.+|++.+++-+.|+ +.+=++....++....+| T Consensus 215 k~~~~v-~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg-l~~~~~~~~~~iaaa~~I 292 (427) T protein:vir:10 215 RKQQAV-WKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISG-VPEFLSSKMDRIVSLSGI 292 (427) T ss_pred Hhcccc-ccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCC-hHHHHHHHHHHHHhhhCC Confidence 1111 2221 10 112223345566665555444456777777788999999988886 456688889999999999 Q ss_pred cccccccc------cc-cceehhhhh-------hhHHHHHHHhcccccchhhhhhhh---------------------he Q lcl|NC_001629. 212 PRELLYGQ------SN-EVTIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAY---------------------IS 256 (279) Q Consensus 212 nekIL~Gt------aT-eeqkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y---------------------~t 256 (279) |--+|.|+ +| |+.+.+||. ..+-|+|+.+-+-|+-++|+-..| .+ T Consensus 293 P~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~ 372 (427) T protein:vir:10 293 HEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVDEEEWSIEFEPLSVPSKKEESEITKNNVESVT 372 (427) T ss_pred CeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEeCCCCCCCHHHHHHHHHHHHHHHH Confidence 99999888 45 567777776 457788877554333233222111 00 Q ss_pred ecccCcccccccccc-------cCCCC--CCC Q lcl|NC_001629. 257 TTAKGGKIESKSSSR-------DSEPL--GND 279 (279) Q Consensus 257 tta~gg~~~s~~~~~-------~~~~~--~~~ 279 (279) +....|-+.-. --| ..+++ +++ T Consensus 373 ~~~~~gvi~~~-e~r~~L~~~~~~~~~~~~~~ 403 (427) T protein:vir:10 373 KAITEQIIDLE-EARDTLRSIAPEFKLKDGNN 403 (427) T ss_pred HHHhcCCCCHH-HHHHHHHhhhccccCCCCcc Confidence 00111211110 000 01111 111 No 111 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=35.14 E-value=1.2 Score=20.06 Aligned_cols=180 Identities=12% Similarity=0.045 Sum_probs=80.2 Q ss_pred Cc---cc-ccchhhccceeeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeeehhhh---- Q lcl|NC_001629. 1 MS---LF-NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVWYGGF---- 71 (279) Q Consensus 1 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 71 (279) |. +| -++..|++++=-.+.+..-..+.--..++=|+..=-|-..+-..-++.+..+ .|.|.--..+..++. T Consensus 43 l~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~ 122 (251) T protein:vir:46 43 IRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPM 122 (251) T ss_pred hccHHHHHHHHHHHHhHhhCceEEeeCccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 00 00 0112222322222222110000000011111212224444444455666655 445654434444332 Q ss_pred hhh---hhhcccch--hhhhh-------cCCCccEEEEeecceeeeecc----cccccc-chhhHHHHHH--HHHhhhhh Q lcl|NC_001629. 72 KYY---AQRVNADQ--FNILV-------REPNRRQVTIRTSDYEMLLNP----FYGANP-QRFGVMFGMA--SNGIGRRL 132 (279) Q Consensus 72 ~~y---~~~v~~d~--fN~~v-------~~~~~~~vtlP~SDV~iieNP----f~~V~~-ee~t~MLd~a--LnaI~~KL 132 (279) +.| |.+|.+.. .+.+. ..++...+.+|-+||.-|-.| +++..+ +....-|..+ ...-..++ T Consensus 123 ~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~ 202 (251) T protein:vir:46 123 NLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNF 202 (251) T ss_pred EEEEECCceEEEEECCCCcEEEEEEEeccCCcceeEEECCccEEEecCcCCCCeeecCHHHHHHHHHHHHHHHHHHHHHH Confidence 122 34443321 11110 123345678999999888643 233322 1222223222 22333344 Q ss_pred -hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCce Q lcl|NC_001629. 133 -DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDD 182 (279) Q Consensus 133 -eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~gee 182 (279) .+.+..++.++.|=....|+-+++++++.+++-.-+++-++++. +-|| T Consensus 203 f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~~~~~g~~n~g~~~~--gm~~ 251 (251) T protein:vir:46 203 LRNGTHAGGILKMKGVLDNKKARDRAREEFPKVLVELNKLGKLSY--SMNQ 251 (251) T ss_pred HHccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccccccc--ccCC Confidence 55566999999997767788888888888888766665444442 3333 No 112 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=32.48 E-value=1.4 Score=19.74 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=68.1 Q ss_pred HHHHHHhhhhhhccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccCccccccHHHHHHH Q lcl|NC_001629. 122 GMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSLQNDANLA 201 (279) Q Consensus 122 d~aLnaI~~KLeqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~DYSts~~~die~l 201 (279) =-+..++... ++.+. .++++|++.+...-...+|++....+|++.+++-+.|+ +.+=+... T Consensus 1 V~k~~~l~~~--------------~~~~~----~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsG-l~d~l~~~ 61 (201) T protein:vir:10 1 MWKAKGLADL--------------CDDSD----GAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGG-IDTFLSQK 61 (201) T ss_pred CccchHHHHH--------------hcCCh----HHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCC-hHHHHHHH Confidence 0000000000 01111 23456666655444446788888888999999999985 45567788 Q ss_pred HHHHHhhcCCcccccccccc-------cceehhhhh-------hhHHHHHHHhcccccchhhhhhhhheecccCcccccc Q lcl|NC_001629. 202 IEIALSEYGMPRELLYGQSN-------EVTIIAFAI-------QKVLPLLKQHDKNIVFNQENFVAYISTTAKGGKIESK 267 (279) Q Consensus 202 kS~LySq~GInekIL~GtaT-------eeqkiAyy~-------stV~PLLkQyek~lvf~~E~fv~y~ttta~gg~~~s~ 267 (279) ..++...-|||--+|.|+.. |...++||- +.+-|.|+.+-+ | |++.+ T Consensus 62 ~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~-----------~-------~~~~~- 122 (201) T protein:vir:10 62 FDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLP-----------F-------IVTEQ- 122 (201) T ss_pred HHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------h-------hcCCC- Confidence 88889999999999999753 446667775 345677776544 1 11110 Q ss_pred cccccCCCCCCC Q lcl|NC_001629. 268 SSSRDSEPLGND 279 (279) Q Consensus 268 ~~~~~~~~~~~~ 279 (279) .-+-.-.||-.- T Consensus 123 ~~~~~f~pL~~~ 134 (201) T protein:vir:10 123 EWSVEFNPLSQV 134 (201) T ss_pred CceEeeCCCCCC Confidence 001112244332 No 113 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=30.04 E-value=1.6 Score=19.45 Aligned_cols=264 Identities=11% Similarity=0.057 Sum_probs=94.1 Q ss_pred Ccccc--------cchhhccceeeeeeec--C--cchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeeeee Q lcl|NC_001629. 1 MSLFN--------LSRRAEDVSFSTFTVQ--D--PTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFFW-ALQGQEVYRVW 67 (279) Q Consensus 1 ~~~~~--------~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (279) +.+|+ ++..|++++=..+.+. + ++...-+ +++ +.. .|...+--.-++.++.. .+-|.-...+- T Consensus 90 ~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~-~~l-l~r--Pn~~~t~~~f~~~l~~~lll~GNAYveii 165 (648) T protein:vir:79 90 TSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRM-RFT-LMA--EATQIPTNQLFIEIAEDLVKYCNVVIAKS 165 (648) T ss_pred HHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHH-HHH-hhc--cCCCCCHHHHHHHHHHHHHhcCCeEEEEE Confidence 11111 1112222221111111 1 1111000 000 111 12222222223333322 23343222211 Q ss_pred hhhh-------------------hhhh---hhccc--ch------hhhhhcCCCccEEEEeecceeeee-----cccccc Q lcl|NC_001629. 68 YGGF-------------------KYYA---QRVNA--DQ------FNILVREPNRRQVTIRTSDYEMLL-----NPFYGA 112 (279) Q Consensus 68 ~~~~-------------------~~y~---~~v~~--d~------fN~~v~~~~~~~vtlP~SDV~iie-----NPf~~V 112 (279) .++. .++| .+|.+ +. |..- ..+..+.+.+|-.||--|- ++.|+. T Consensus 166 Rd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~-~~g~~~~~~~~~~dIIHik~~~~~d~~~Gl 244 (648) T protein:vir:79 166 RAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQE-QEGQDKPQKFKPEDIVHIYYKREKGRAFGT 244 (648) T ss_pred ecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEE-ecCCceeEEecCccEEEEccCCCCCCceec Confidence 1110 1111 22221 11 1111 1233456778888887662 233333 Q ss_pred ccc-hhhHHH--HHHHHHhhhhh-hccCceEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeeccCCceeEEccC Q lcl|NC_001629. 113 NPQ-RFGVMF--GMASNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQP 188 (279) Q Consensus 113 ~~e-e~t~ML--d~aLnaI~~KL-eqqgslKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYid~geei~QLq~ 188 (279) -+= .+-.-| ..+...-.+++ .+.+.-.+.++++.. ++..+..+..+++ ..+.++|.-..+.+-...++.- T Consensus 245 Spi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~---~~~~e~~k~~~e~---~~~~~~~~~i~gg~v~~~~~~i 318 (648) T protein:vir:79 245 PWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLE---QEGFGAEEGEVDL---VRGEVENMDVEGGMVTTERVNI 318 (648) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCC---ccchHHHHHHHHH---HHHhcccccccccccccceeec Confidence 221 111112 22222333444 333334455666543 2333333333333 2334555433333323333332 Q ss_pred ccccccHHHH------HHHHHHHHhhcCCcccccc--c---ccccceehhhhhhhHHHHHHHhcccccchhhhhhhh--- Q lcl|NC_001629. 189 DYSGSLQNDA------NLAIEIALSEYGMPRELLY--G---QSNEVTIIAFAIQKVLPLLKQHDKNIVFNQENFVAY--- 254 (279) Q Consensus 189 DYSts~~~di------e~lkS~LySq~GInekIL~--G---taTeeqkiAyy~stV~PLLkQyek~lvf~~E~fv~y--- 254 (279) +... +..|+ ++.+.+.+..||||.-++- + .+|.++...++.++|.|+...+...+ ..+..... T Consensus 319 ~~~~-s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~~~~~~~i~~l~~~i~~~l--e~~~~~~ll~e 395 (648) T protein:vir:79 319 SSIA-SNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLSSDFKDRIKALQKVMATFI--NEFMVKEILME 395 (648) T ss_pred cccC-CHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhh Confidence 2222 33454 4556789999999987772 1 23445555567778888876654421 11111111 Q ss_pred -------------------------------heecccCcccccccccc---cCCCCCCC Q lcl|NC_001629. 255 -------------------------------ISTTAKGGKIESKSSSR---DSEPLGND 279 (279) Q Consensus 255 -------------------------------~ttta~gg~~~s~~~~~---~~~~~~~~ 279 (279) .++-..+|-+ +....| +-+|+.+. T Consensus 396 ~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~Gil-T~NEaR~~lGlpPi~~g 453 (648) T protein:vir:79 396 GGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAI-SEDEMRELIGRDPVDDG 453 (648) T ss_pred hhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCc-CHHHHHHHhCCCCCCCC Confidence 1111112211 111112 22333322 No 114 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=29.03 E-value=1.7 Score=19.33 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=90.1 Q ss_pred Ccccccch--------------hhccceeeeeeecCc-chhHHHHHHHHHHHHhhcccchhhhh---hhhhhhhhhccce Q lcl|NC_001629. 1 MSLFNLSR--------------RAEDVSFSTFTVQDP-TTDLLLGKLLGLVSYFDNVDYSEASK---LEDLFFWALQGQE 62 (279) Q Consensus 1 ~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 62 (279) +++-.|.+ ++..+. ++|. ..| .|-.-+-++.-=.-.|.| -|-+.-. -+-+-+|-+.... T Consensus 57 ~~~~~la~~~~a~~~h~~~i~~k~n~l~-~~~~-Pn~~~t~~~f~~~~~d~ll~Gn-ay~~i~rn~~G~~~~L~~l~~~~ 133 (344) T protein:vir:60 57 ISFTGLAKSLRAAVHHSSPIYVKRNILA-STFI-PHPWLSQQDFSRFVLDFLVFGN-AFLEKRYSTTGKVIRLETSPAKY 133 (344) T ss_pred CCHHHHHHHHHhhhhhccchhhhhhHHH-hhcc-CCCCCCHHHHHHHHHHHHhcCC-eEEEEEECCCCcEEEEEEcCcce Confidence 22222211 111110 1221 111 110011111100001111 1111000 0001112222222 Q ss_pred eeeeehhhhhhhhhhcccchhhhhhcCCCccEEEEeecceeeeecc-----ccccccc---hhhHHHHHHHHHhhhhhhc Q lcl|NC_001629. 63 VYRVWYGGFKYYAQRVNADQFNILVREPNRRQVTIRTSDYEMLLNP-----FYGANPQ---RFGVMFGMASNGIGRRLDS 134 (279) Q Consensus 63 ~~~~~~~~~~~y~~~v~~d~fN~~v~~~~~~~vtlP~SDV~iieNP-----f~~V~~e---e~t~MLd~aLnaI~~KLeq 134 (279) |-+..-++. || -| .+..+.+++|-.||--|-+| .|+.-+= .-+-.+..+...-.++.=. T Consensus 134 vr~~~~~~~-~~-----------~v-~~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~ 200 (344) T protein:vir:60 134 TRRGVEEDV-YW-----------WV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) T ss_pred EEEeecCCe-EE-----------EE-ccCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 222222221 11 01 12234567777777655433 3433221 0111133333334455544 Q ss_pred cCc-eEEEEecCcccchHHHHHHHHHHHHHHHHHHHhcCCeeec--cC-CceeEEccCccccccHHHHH----HHHHHHH Q lcl|NC_001629. 135 QAQ-IKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVI--GS-DDDIKQIQPDYSGSLQNDAN----LAIEIAL 206 (279) Q Consensus 135 qgs-lKifikL~i~~~~ee~reqa~sRik~MqelA~~~~GvtYi--d~-geei~QLq~DYSts~~~die----~lkS~Ly 206 (279) +|. ..+.++.+=..-+++-+++.++.+++.. -... ++...+ .+ +++=+++.|-=.++.++|+. +-+...+ T Consensus 201 NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~-g~~~-~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa 278 (344) T protein:vir:60 201 NGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK-GRNN-FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLL 278 (344) T ss_pred ccCCCceEEEecCcCCCHHHHHHHHHHHHHhc-CCCC-CcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHH Confidence 555 4555554322234444555554444421 0111 111222 22 22323444432333344432 4456688 Q ss_pred hhcCCccccc----ccc--c--ccceehhhhhhhHHHHHHHhcccccchh----h--hhhhhheecccC Q lcl|NC_001629. 207 SEYGMPRELL----YGQ--S--NEVTIIAFAIQKVLPLLKQHDKNIVFNQ----E--NFVAYISTTAKG 261 (279) Q Consensus 207 Sq~GInekIL----~Gt--a--TeeqkiAyy~stV~PLLkQyek~lvf~~----E--~fv~y~ttta~g 261 (279) ..||||..++ +.+ + -|++.+.|+..+|.|+++..|- +++ | -|..|-..+.-+ T Consensus 279 ~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~e~---ln~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 279 DAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE---INGWLGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccccCccccCCCCC Confidence 9999999887 111 2 2778899999999999998763 111 1 122222221111 Done!