Query lcl|Aclame:protein:vir:5205|NCBI_annot:upper collar protein|genbank:acc:NP_040728;genbank:gi:9626399;genbank:GeneID:1260970 Match_columns 309 No_of_seqs 14 out of 20 Neff 3.9 Searched_HMMs 1612 Date Fri Nov 29 20:42:57 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_15 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_15_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5205 Length: 309 # 100.0 9E-153 5E-156 854.2 27.1 309 1-309 1-309 (309) 2 protein:vir:121 Length: 308 # 100.0 9E-145 6E-148 810.2 26.3 308 1-309 1-308 (308) 3 protein:vir:17 Length: 306 # N 100.0 1E-135 7E-139 760.6 23.3 302 1-308 1-306 (306) 4 protein:vir:4732 Length: 337 # 100.0 1E-131 9E-135 737.8 24.2 303 1-306 1-337 (337) 5 protein:vir:79400 Length: 323 100.0 6E-119 4E-122 668.5 24.8 295 1-309 1-317 (323) 6 protein:vir:9605 Length: 317 # 100.0 7E-117 4E-120 657.4 22.9 295 1-303 12-317 (317) 7 protein:vir:97362 Length: 327 100.0 3E-105 2E-108 593.5 24.2 299 1-308 1-327 (327) 8 protein:vir:9466 Length: 249 # 100.0 5.3E-83 3.3E-86 471.6 18.3 225 74-308 1-249 (249) 9 protein:vir:9445 Length: 249 # 100.0 5.3E-83 3.3E-86 471.6 18.3 225 74-308 1-249 (249) 10 protein:vir:9871 Length: 429 # 19.6 2.9 0.0018 18.0 17.3 293 1-309 34-397 (429) No 1 >protein:vir:5205 Length: 309 # NCBI annotation: upper collar protein # Family: family:all:2168 # MgeID: mge:116 # MgeName: PZA # Cross-refs: genbank:acc:NP_040728;genbank:gi:9626399;genbank:GeneID:1260970 Probab=100.00 E-value=8.8e-153 Score=854.20 Aligned_cols=309 Identities=100% Similarity=1.439 Sum_probs=308.6 Q ss_pred CCcccccccCCHhHHhhhccchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCccceeeecccc Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGAL 80 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~g~m~l~~~~ 80 (309) ||||||+++++|+||+++||||||+||+||++++++|+|+||||||||||+|||++|||+|+||||||+++|||+||++. T Consensus 1 m~~k~~~~~~~i~~i~~~k~N~~~~~y~ryl~~l~~~lf~wenlp~~id~~flE~~L~q~g~V~f~kd~~~gy~~~~~~~ 80 (309) T protein:vir:52 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGAL 80 (309) T ss_pred CCccccchhhhHHHHHhhhchhHHHHHHHHHHhhhhhhhcccCCCCCcCHHHHHHHHHhCCCeEEEEecceeeeeecccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeeeccCceeeeeccccceeeeccccccccCCCCCEEEecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhhcCceE Q lcl|Aclame:pro 81 SGQRDVYNQATVFRASSPVYQKEFKLYNYRDMKEDDMGVVIYNNDMSFPTTPTLELFAAELAELKEIISVNQNAQKTPVL 160 (309) Q Consensus 81 s~~~niy~qP~~f~~~~~~~~~~f~~~~y~~~~~~~~~Vvi~nN~~~~p~~~~ie~ya~eLaeI~~ti~~n~~qqk~P~i 160 (309) +|++|+||||+.|++++++||++|+++||+++++|+++||||||++++|+++||||||++||+|++||++|++|||+|+| T Consensus 81 ~g~~~ly~qp~~f~an~~~~~~k~~~~~~r~~~ed~~~VViyNN~~~~p~~~ile~ya~~LAei~~t~~~n~~~~k~P~i 160 (309) T protein:vir:52 81 SGQRDVYNQATVFRASSPVYQKEFKLYNYRDMKEDDMGVVIYNNDMSFPTTPTLELFAAELAELKEIISVNQNAQKTPVL 160 (309) T ss_pred ccccccccCCceeeccccccceeeeeeechhhccCccEEEeeCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhCCeE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHHHHHHHHHHHHHHHhhcccccccchhhhhhh Q lcl|Aclame:pro 161 IRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVT 240 (309) Q Consensus 161 i~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL~~~k~~~~sEllT~LGInN~n~DKkERlv~ 240 (309) |+|+++|+|||+||+|+|++|||||+++|++|+|+|+||+|+||+++|+|+++|+..|+||||||||+|+++|||||||+ T Consensus 161 I~a~~n~~~s~~~L~nki~~g~Pvi~~~~~~d~D~I~V~~t~a~~v~d~l~~~k~~~~NE~~t~LGI~n~~~dKkERvv~ 240 (309) T protein:vir:52 161 IRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVT 240 (309) T ss_pred EEecCCCcchHHHHHHHHhCCcceEEecCCCCcccceeeecCcchhcchhHHHHHHHHHHHHHhhccccccchhhhcchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHHHHHHHHHhhhhccCCCcCCC Q lcl|Aclame:pro 241 DEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRRELQQIENVSRGTLGGETNE 309 (309) Q Consensus 241 ~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~~~l~~l~~~~~~~~~~~~~~ 309 (309) +||+|||+||+||++||||+|+|||++||++|||||||+|++++|++|||+|++|+.+++|++||||++ T Consensus 241 ~Ea~SNn~~i~a~~~iylk~R~ea~elIN~~yGL~I~v~~~~~~V~~~~~~l~~~~~~~~~~~g~~~~~ 309 (309) T protein:vir:52 241 DEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRRELQQIENVSRGTLGGETNE 309 (309) T ss_pred hhhhhhhhhhhhhhHhhhhhhHHHHHHHHhHhccceeEeeccchHhhhhhhhHhHHHhhhccCCcccCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:121 Length: 308 # NCBI annotation: upper collar protein # Family: family:all:2168 # MgeID: mge:4 # MgeName: B103 # Cross-refs: genbank:acc:NP_690644;swissprot:sw:q37891;genbank:gi:22855158;interpro:IPR008016;uniprot:Q37891;genbank:GeneID:955371 Probab=100.00 E-value=9.4e-145 Score=810.20 Aligned_cols=308 Identities=76% Similarity=1.193 Sum_probs=307.0 Q ss_pred CCcccccccCCHhHHhhhccchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCccceeeecccc Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGAL 80 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~g~m~l~~~~ 80 (309) |.+|| ++|++|++|+++|||||++||+|||++|++++|+||||||||||+|||++|||+||||||||+++|||+++|++ T Consensus 1 ~~~~~-~~~k~i~~~~~~~~n~~~~~y~ryl~~l~l~lf~wE~lp~~iD~~~lE~~l~q~G~vvf~~d~~~gyi~~~G~~ 79 (308) T protein:vir:12 1 MARKR-NSYKSINDIQRMRGNRWYYHYYQYLCSLAYQLFEWERLPPSVDPSYLEKSIHQFGYVGFYKDPRIGYIACQGAL 79 (308) T ss_pred CCccc-chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCcccHHHHHHHHHhcCCeEEEeccccceeeeccee Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeeeccCceeeeeccccceeeeccccccccCCCCCEEEecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhhcCceE Q lcl|Aclame:pro 81 SGQRDVYNQATVFRASSPVYQKEFKLYNYRDMKEDDMGVVIYNNDMSFPTTPTLELFAAELAELKEIISVNQNAQKTPVL 160 (309) Q Consensus 81 s~~~niy~qP~~f~~~~~~~~~~f~~~~y~~~~~~~~~Vvi~nN~~~~p~~~~ie~ya~eLaeI~~ti~~n~~qqk~P~i 160 (309) ||.+|+|+||+.|++++++|+++|++++|++++++++|||||||++++|+++||||||++||+|++||++|++|||+|+| T Consensus 80 s~~~d~yn~p~~~~~S~f~~~n~f~l~~y~d~~~~~~~VviyNN~~~~~~~~ile~ya~~LAei~~ti~~n~n~~K~P~i 159 (308) T protein:vir:12 80 SGTVDHYNLPDRFHASSVGYQNTFKLYNYSDMKEKNMGVAIYNNDLKCSTLPALEMFAQDLAELKEIIAVNQNAQKTPVL 159 (308) T ss_pred ccccccccCCCceeeccccccccccccccccccccCCeeEecCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhCCeE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHHHHHHHHHHHHHHHhhcccccccchhhhhhh Q lcl|Aclame:pro 161 IRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVT 240 (309) Q Consensus 161 i~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL~~~k~~~~sEllT~LGInN~n~DKkERlv~ 240 (309) |+|+++|+||++||||+|++|||||+++|+||.|+|+||+|+||+++|+|+++|+++|+||||||||+|+|+|||||||+ T Consensus 160 I~a~~n~qls~~nL~n~i~~g~Pvi~~~~~~d~d~l~V~~tda~~v~d~l~~~k~~~~nE~~t~LGI~n~~~dKkERmv~ 239 (308) T protein:vir:12 160 IAANDNNQLSLKNIYNQYEGNAPVIFVHESLDLDNLKVFKTDAPYVVDKLNAQKNAVWNEVMTYLGIKNANLEKKERMVT 239 (308) T ss_pred EEecCCCcchHHHHHHHHhcCcceEEecCCCCcccceeeecCchhhhhHHHHHHHHHHHHHHHhhhhccccchhhhcchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHHHHHHHHHhhhhccCCCcCCC Q lcl|Aclame:pro 241 DEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRRELQQIENVSRGTLGGETNE 309 (309) Q Consensus 241 ~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~~~l~~l~~~~~~~~~~~~~~ 309 (309) +||+||++||++|++||||+|+|||++||++|||||||+|+++++++|+++++.|++|++|++||||+- T Consensus 240 ~Ea~SNn~qi~a~~niylk~R~ea~e~In~~yGLnI~v~~~~~~~~~~~~~~~~~~~~~~~t~~ge~~~ 308 (308) T protein:vir:12 240 SEVDSNDEQIESSGNIYLKARQEACNKISELYGLNLKVKFRYDIVEQMRLNAQGIENVSRGTLGGETNG 308 (308) T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHhcCCceeeechhhHHhhccChhhhhhhccccCCcccCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:17 Length: 306 # NCBI annotation: head-tail connector (portal protein) # Family: family:all:2168 # MgeID: mge:323 # MgeName: GA-1 # Cross-refs: genbank:acc:NP_073693;swissprot:trembl:q9fzw5;genbank:gi:12248117;hssp:P04332;interpro:IPR008016;uniprot:Q9FZW5;genbank:GeneID:919912 Probab=100.00 E-value=1.1e-135 Score=760.57 Aligned_cols=302 Identities=54% Similarity=0.905 Sum_probs=290.3 Q ss_pred CCcccccccCCHhHHhhhccchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCccceeeecccc Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGAL 80 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~g~m~l~~~~ 80 (309) |--- .-+++.+++|++||||+|++||.|||++||+|+|+||||||||||+|||++|||+|+||||||+++|||+++|+. T Consensus 1 ~~~~-~~s~~~~~~v~~~~~n~~~~~y~Ryl~~l~l~lf~wenlp~~id~~flE~~L~q~g~V~f~kd~~~gyia~~G~~ 79 (306) T protein:vir:17 1 MLED-GFSYKTIGEIQRRRGNLWFRTYQRYLFSLAYQMFEWQGLPKTVDPIFLEKQLHQRGFVAFYKDEMYGYLGVQGTL 79 (306) T ss_pred CCcc-cccHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhcccCCCCCcCHHHHHHHHHhCCCeEEEeechhhhheecccc Confidence 3222 133447888999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCeeeccCceeeeeccccceeeecccccc---ccCCCCCEEEecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 81 SGQRDVYNQATVFRASSPVYQKEFKLYNYR---DMKEDDMGVVIYNNDMSFPTTPTLELFAAELAELKEIISVNQNAQKT 157 (309) Q Consensus 81 s~~~niy~qP~~f~~~~~~~~~~f~~~~y~---~~~~~~~~Vvi~nN~~~~p~~~~ie~ya~eLaeI~~ti~~n~~qqk~ 157 (309) ++++|+||||+.|++++++|||+|++++|+ |..++++|||||||++++|+++||||||++||+|++||++|++|||+ T Consensus 80 ~~~~dly~qp~~f~an~n~~~k~~~~~~y~~~~d~~~k~~~VviyNN~~~~p~i~ilelya~~LAeI~~t~~~n~n~~K~ 159 (306) T protein:vir:17 80 SGQINLYNQPNFYTASAPTYQKSFPLYWYDMGEDLNEKGQGIVIYNNLERMPTLDILNLYAMNLAELKETIYVNQNAQKT 159 (306) T ss_pred CCccccccCCcceecccccccceeEeeeeeccccccCCCCeEEecCCccccccccHHHHHHHHHHHHHHHHHHHHhHhhC Confidence 999999999999999999999999999998 56689999999999999999999999999999999999999999999 Q ss_pred ceEEEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHHHHHHHHHHHHHHHhhcccccccchhhh Q lcl|Aclame:pro 158 PVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKER 237 (309) Q Consensus 158 P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL~~~k~~~~sEllT~LGInN~n~DKkER 237 (309) |+||+|+++|+||++||+|+|++|+|||++++++++|+|+||+|+||+++|+|++|++++||||||||||+|+++||||| T Consensus 160 P~iI~a~~n~~~s~~~l~n~~~~~~Pvv~~~~~~~~D~i~V~~t~A~~v~d~L~~e~~~~~nEl~t~lGI~n~~~DKkER 239 (306) T protein:vir:17 160 PVIIKAGDNDLFSMKQVYNKYEGNEPVIFAGKKFNTDDIEVLKTDAPYVADKLTMLFKDQWNEAMTFLGLSNANTDKKER 239 (306) T ss_pred CeEEEecCCccchHHHHhHhhhCCcceEeecCCcChhhceeeecCchhhhHHHHHHHHHHHHHHHHhhhhccccchhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHHHHHHHHHhhhhccCC-CcCC Q lcl|Aclame:pro 238 MVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRRELQQIENVSRGTLG-GETN 308 (309) Q Consensus 238 lv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~~~l~~l~~~~~~~~~-~~~~ 308 (309) ||++||+|||+||+||++||||+|+|||++||++|||||||+|++|+|+. +.||++.+|++| |.|- T Consensus 240 vv~~Ea~SNn~~i~a~~~iylk~R~eaielIN~~yGLnI~v~~~~~~v~~-----~~~~~~~~~~~~~~~~~ 306 (306) T protein:vir:17 240 LIQSEVESNNDQIQGSANIYLAPRQEACRLINEYYGLNVSVKLRKELVGN-----GELHNAIEGNSGMGNTV 306 (306) T ss_pred hhhhhhhhhhhhhhhhhHhhhhhhHHHHHHHHhHhccceeEEeccccccc-----cchhhcccccCccccCC Confidence 99999999999999999999999999999999999999999999999998 899999999994 6666 No 4 >protein:vir:4732 Length: 337 # NCBI annotation: connector protein # Family: family:all:2168 # MgeID: mge:103 # MgeName: Cp-1 # Cross-refs: genbank:acc:NP_044823;swissprot:trembl:q37995;genbank:gi:9629535;uniprot:Q37995;genbank:GeneID:1261247 Probab=100.00 E-value=1.5e-131 Score=737.82 Aligned_cols=303 Identities=36% Similarity=0.585 Sum_probs=290.3 Q ss_pred CCcccccccCCHhHHhhhc------cchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCcccee Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQK------RNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYI 74 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~------~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~g~m 74 (309) |||| +++++||||++.+ |+||++||+||++.+++|+|+|||||+||||+|||++|||+||||||||+++||| T Consensus 1 ~~~~--n~~r~~~~i~l~k~~~~r~r~~~~~~y~ny~~~l~~n~f~wE~lP~~iD~~flE~~L~q~G~v~f~~D~~~~yi 78 (337) T protein:vir:47 1 MSYK--NYKRHLGKIELNKETVERNRLAFFEFYFNYFYNIVVNYFTWEGLPNDIDELFIEKKLIENGHVAFFHDDTFGYI 78 (337) T ss_pred CCcc--ccccccceeeeccchhhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccHHHHHHHHHhcCCeEEeccccccee Confidence 9999 9999999999955 9999999999999999999999999999999999999999999999999999999 Q ss_pred eeccccCCCeeeccCceeee---eccccceeeecccc----ccccCC---------CCCEEEecCCcccCCChHHHHHHH Q lcl|Aclame:pro 75 ACNGALSGQRDVYNQATVFR---ASSPVYQKEFKLYN----YRDMKE---------DDMGVVIYNNDMSFPTTPTLELFA 138 (309) Q Consensus 75 ~l~~~~s~~~niy~qP~~f~---~~~~~~~~~f~~~~----y~~~~~---------~~~~Vvi~nN~~~~p~~~~ie~ya 138 (309) ++|++.+|++|+|+||+.|+ ++++.++++|++++ |++..+ ++++||||||++++|+++|||||| T Consensus 79 a~g~t~~g~idiy~~pt~y~~vna~s~n~~ksf~i~~~~n~f~~~~~l~k~~~~~~~~~~VVi~NN~~~~~~i~ilelya 158 (337) T protein:vir:47 79 AQGGTRGERLNHYDQPLTYQPVNASSMNYFKQMEIAYTENDFRVIEELHKDNPDKIKRPCIVIPNNNFYEPYIGYLELFC 158 (337) T ss_pred eccccccCceeeccccccccccCcccccceeeeeEeecccchhhhhhhcccccchhccCeEEecCcccccccccHHHHHH Confidence 99999999999999999995 88999999999986 877544 777999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCC----------cccceeeecccchhhH Q lcl|Aclame:pro 139 AELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALD----------SDSIEVFKTDAPYVVD 208 (309) Q Consensus 139 ~eLaeI~~ti~~n~~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d----------~d~i~vl~t~a~~~~d 208 (309) ++||+|++||++|++|||+|+||+|+++|.+|+++|+|+|++|||||+++|+|| +|+|+||+|+||+++| T Consensus 159 ~eLAeI~~t~~~n~n~~K~P~~I~a~e~n~~s~q~l~nki~ng~Pvv~~~~~~d~~~~~~~~~l~D~I~v~~t~A~~~ld 238 (337) T protein:vir:47 159 EKLADIELTIQLNRNAQITPYFIFADNTNVLSMKNIFNKIANFEPVVYLNKQKDQDGQDSFKQLSDYIQVFRTDAPFLLD 238 (337) T ss_pred HHHHHHHHHHHHHHHhhhCCeEEEEcCCccchHHHHHHHHhCCcceEEeccccCchhhhhhhhhhhhhhhhccCchhhhH Confidence 999999999999999999999999999999999999999999999999999998 6999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHH Q lcl|Aclame:pro 209 KLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQM 288 (309) Q Consensus 209 kL~~~k~~~~sEllT~LGInN~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~ 288 (309) +|++|++++||||||||||+|+++|||||||++||+|||+||+||++||||+|+|||++||++|||||||+|+ +||+|| T Consensus 239 ~l~~e~~~~~nEl~t~LGI~n~~~DKkERvv~~Ea~SNn~~i~a~~~iylk~R~eaielINk~yGLnIsv~~~-~t~~~~ 317 (337) T protein:vir:47 239 KLHDEKLRVMNQLLTFIGINNNPSDKKERLVVSEAISNNGVISANIEVGWKSRRKFVELINKCYGLEISVKPA-ETIQQF 317 (337) T ss_pred HHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhhhhhhhhhhhhHHhhhhhhHHHHHHHHHHhcCCceeehh-hhhhhh Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999 Q ss_pred HHHHHHHHhhhh-ccC-CCc Q lcl|Aclame:pro 289 RRELQQIENVSR-GTL-GGE 306 (309) Q Consensus 289 ~~~l~~l~~~~~-~~~-~~~ 306 (309) ..+...||.+++ |+. .-+ T Consensus 318 ~~~~~~~~~~~~~~~~~~~~ 337 (337) T protein:vir:47 318 NLDKVALDLAEKEGTIIDPE 337 (337) T ss_pred hhHHHHHHhhhhcCcccCCC Confidence 999889998875 544 333 No 5 >protein:vir:79400 Length: 323 # NCBI annotation: upper collar # Family: family:all:2168 # MgeID: mge:1869 # MgeName: Av-1 # Cross-refs: genbank:acc:YP_001333664;genbank:gi:151266301;genbank:GeneID:5329882 Probab=100.00 E-value=6.5e-119 Score=668.53 Aligned_cols=295 Identities=28% Similarity=0.537 Sum_probs=264.5 Q ss_pred CCcccccccCC-H-hHHh-------hhccchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCcc Q lcl|Aclame:pro 1 MGRKRSNSYRS-I-NEIQ-------RQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVI 71 (309) Q Consensus 1 m~~k~s~~~~~-i-nki~-------~~~~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~ 71 (309) |.|. -+-++ | |||. ..||++|.++|.|||+++++|+|+||||||||||+|||++|||+||||||||+++ T Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~q~~~~~my~Ryl~~l~~n~f~wE~lP~~iD~~flE~~L~q~G~vvf~~d~~~ 78 (323) T protein:vir:79 1 MAKS--DYVKNGIYNKIMLKPPSSSEARQAQLEHMYRRQLMGKCLSRFTWEGLPNGIDPRFIEATIFNNGYSVFYFDTMF 78 (323) T ss_pred CCcc--chhhccccceeeecCCCchhhHHHHHHHHHHHHHHhHhhhhhhccCCCCCccHHHHHHHHHhcCCeEEEecccc Confidence 4432 22111 1 2332 2579999999999999999999999999999999999999999999999999999 Q ss_pred c-eeeeccccCCCeeeccCceeeeec-cccceeeeccccccccCCCCCEEEecCCcccCCChHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 72 S-YIACNGALSGQRDVYNQATVFRAS-SPVYQKEFKLYNYRDMKEDDMGVVIYNNDMSFPTTPTLELFAAELAELKEIIS 149 (309) Q Consensus 72 g-~m~l~~~~s~~~niy~qP~~f~~~-~~~~~~~f~~~~y~~~~~~~~~Vvi~nN~~~~p~~~~ie~ya~eLaeI~~ti~ 149 (309) | ||+||++.+|++|+||||++|+++ +++|+++|..+| +||||||++++|+++||||||++||+|++||+ T Consensus 79 g~yia~~~~~~g~~dly~qpt~f~~n~N~~yqk~~~~~d---------~VVI~nN~~~~p~idilelya~eLAeI~~ti~ 149 (323) T protein:vir:79 79 EMFMAMPATISGPLDIQDNPTGYRVSRNGIYSREVSASD---------SVCIWGNQVREPEIDLVLSYAARLAQIDRTIE 149 (323) T ss_pred cceeeeccccccccccccCCcceeeccCceeEEEEEEec---------eeEeccCccccccccHHHHHHHHHHHHHHHHH Confidence 9 999999999999999999999997 588999998877 59999999999999999999999999999999 Q ss_pred HHHHhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCC----cccceeeecccchhhHHHHH-----HHHHHHHH Q lcl|Aclame:pro 150 VNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALD----SDSIEVFKTDAPYVVDKLNA-----QKNAVWNE 220 (309) Q Consensus 150 ~n~~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d----~d~i~vl~t~a~~~~dkL~~-----~k~~~~sE 220 (309) +|++|||+|+||+|+++|+||++||+|+|++|||||+++|+|| +|+|+||+|++++++|+|++ +|+++||| T Consensus 150 ~n~n~~K~P~iI~a~~n~~~s~~~L~nki~~g~Pvi~~~~~~~~~dl~d~IeV~~t~~n~~a~~l~~~l~~e~k~~i~nE 229 (323) T protein:vir:79 150 IDLLNERNPMIVACSQDQRLTIQNLISRIYDGEPVVWGTENLSMENLANTIGVFPLNQNAGAGAVSSIKHMESKSKIWGE 229 (323) T ss_pred HHHhHhhCCeEEEecCCCcchHHHHHHHHhcCcceEEeccCCChhhhhhhhceeecCccchhhhHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999999999999999998 57899999997776666666 58899999 Q ss_pred HHHhhcccccccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEec--hHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 221 MMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFR--YDIVEQMRRELQQIENV 298 (309) Q Consensus 221 llT~LGInN~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~--~~~v~~~~~~l~~l~~~ 298 (309) |||||||+|+++|||||||++||+||++||++|++||||+|+|||++||++|||||||+|+ +++++++-.-|.+|. T Consensus 230 l~t~LGI~n~~~DKKERvv~~EA~SNn~~i~a~~~iylk~R~eaielIN~~yGLnIsvk~~~dd~~~~~ls~~~~~~~-- 307 (323) T protein:vir:79 230 ALTMLGIMNVNSEKRERMVVEEASANSGQVLASRESFMKPRLLACEQINEKFGLNISCSWAVDDNAAPNLSDYLTELN-- 307 (323) T ss_pred HHHhhhhccccchhhhhhhhhhhhhhhhhhhhhhHhhhhhhHHHHHHHHhHhcCcceEEeeecccchhHHHHHHHhhc-- Confidence 9999999999999999999999999999999999999999999999999999999999999 899988744444554 Q ss_pred hhccCCCcCCC Q lcl|Aclame:pro 299 SRGTLGGETNE 309 (309) Q Consensus 299 ~~~~~~~~~~~ 309 (309) .-+.||+.-- T Consensus 308 -~~~~~~~~~~ 317 (323) T protein:vir:79 308 -TTTYGGENVG 317 (323) T ss_pred -cccccccccC Confidence 3344666433 No 6 >protein:vir:9605 Length: 317 # NCBI annotation: head-tail connector protein # Family: family:all:2168 # MgeID: mge:172 # MgeName: C1 # Cross-refs: genbank:acc:NP_852021;genbank:gi:31072023;genbank:GeneID:1489940 Probab=100.00 E-value=6.9e-117 Score=657.41 Aligned_cols=295 Identities=17% Similarity=0.216 Sum_probs=274.9 Q ss_pred CCcccccccCCHhHHhhhccchHHHHHHHHHHhhcccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCc-----cceee Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPV-----ISYIA 75 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~~n~~~~~y~~~~~~~~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~-----~g~m~ 75 (309) |.||||+.+++|+|+++.||+|||.++++++..+++++|+|||| ||||+|||++|||+|+||||||++ +||++ T Consensus 12 ~~~k~~~~~~~i~k~~~e~rnr~f~i~~~~y~~~L~~Lf~wEnl--~ID~~flE~~L~q~g~V~f~~d~~g~i~ilgy~a 89 (317) T protein:vir:96 12 MNYKMSTFTDDIAERVKLHKQNYFNIIYSRYVEFLPLLISYENY--DLDSLLIESYLRAGYGVAIGETKTGKIDVLGYCS 89 (317) T ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--cccHHHHHHHHHcCCceEEEeccccceeEeeccc Confidence 99999999999999999999999988888888888899999999 699999999999999999999997 89999 Q ss_pred eccccCCCe--eeccCceeeeeccccceeeeccccccccCCCCCEEEecCCccc-CCChHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 76 CNGALSGQR--DVYNQATVFRASSPVYQKEFKLYNYRDMKEDDMGVVIYNNDMS-FPTTPTLELFAAELAELKEIISVNQ 152 (309) Q Consensus 76 l~~~~s~~~--niy~qP~~f~~~~~~~~~~f~~~~y~~~~~~~~~Vvi~nN~~~-~p~~~~ie~ya~eLaeI~~ti~~n~ 152 (309) ++++.++++ ++|++|+.|.++.+++++.|...+ -.+|+++||+|||... +|++++|+|||++||||++||++|+ T Consensus 90 ~~~~~~~~~~~~L~~~~i~f~~~n~~~q~~~~~~~---~~~~gn~Vv~~Nk~~~y~~didiie~Ya~eLAeI~~ti~~~~ 166 (317) T protein:vir:96 90 VNTNYLQPIKEPLQGKDITFIHNNILPKGKYKELT---RYSDGNFVVLRNKRASFLCDYNIITHYVMEMSEIANSRYSIS 166 (317) T ss_pred cchhhccccccCccccccccccccccCccceeeee---eeccCCeEEecCcccccCCchhHHHHHHHHHHHHHHHHHHHH Confidence 999999997 999999999999988887777655 3457889999999876 9999999999999999999999999 Q ss_pred HhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHHH---HHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 153 NAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLN---AQKNAVWNEMMTFLGIKN 229 (309) Q Consensus 153 ~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL~---~~k~~~~sEllT~LGInN 229 (309) +|||+|+||+|.++++ |+++|+|+|++|||||+++|+||.|+ +||+|++|+++|+|+ +|++++||||||||||+| T Consensus 167 ~q~k~p~Iik~~~n~~-s~q~l~nki~ng~Pvv~~~~~~d~dd-~i~~~~~~~v~~~l~~lk~e~~nk~nEllT~lGi~n 244 (317) T protein:vir:96 167 IQAKVNTFIRNEGGSK-DGQVMANNLFNGVPYTATTPKFDPEE-HILTFNNASAVSFLPELKREQQNKISELNAMLGLNT 244 (317) T ss_pred hhccCCEEEEeCCCcc-hHHHHHHHHhCCcceEEeccCCCCcc-ccccccccccchhhHHHHHHHHHHHHHHHHHhhhcc Confidence 9999999999999999 99999999999999999999999988 999988777666555 568899999999999999 Q ss_pred cccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 230 ANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRRELQQIENVSRGTL 303 (309) Q Consensus 230 ~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~~~l~~l~~~~~~~~ 303 (309) +|+|||||||++||+||++||+||++||||+|+|||++||++|||||||+|+ +.+++++|+|++|++||+-.- T Consensus 245 ~~~dKkermv~~EA~SN~~~i~an~~iylk~R~ea~elIN~~YGLnI~v~~~-d~~~~~~s~l~~~q~vs~~~~ 317 (317) T protein:vir:96 245 LGVDKESGVSEIEAQSNTAFKKANENIYLGIRNEALNLINNKYGLNIHAEYR-DNMVAELSSIEKLQIVSEVAQ 317 (317) T ss_pred ccchhhhcchhhhhhccchhhhcchhhhhhhhHHHHHHHHHhhCcceeEeec-chhhhhHhhHHHHHHHHHhcC Confidence 9999999999999999999999999999999999999999999999999999 666677899999999998655 No 7 >protein:vir:97362 Length: 327 # NCBI annotation: ORF007 # Family: family:all:2168 # MgeID: mge:1669 # MgeName: 66 # Cross-refs: genbank:acc:YP_239465;genbank:gi:66395194;genbank:GeneID:5130537 Probab=100.00 E-value=3.2e-105 Score=593.46 Aligned_cols=299 Identities=16% Similarity=0.223 Sum_probs=259.1 Q ss_pred CCcccc----cccCCHhH-HhhhccchHHHHHHHHHHhh--cccceeecCCCCCccHHHHHHHHHhcCcEEEEeCCccce Q lcl|Aclame:pro 1 MGRKRS----NSYRSINE-IQRQKRNRWFIHYLNYLQSL--AYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISY 73 (309) Q Consensus 1 m~~k~s----~~~~~ink-i~~~~~n~~~~~y~~~~~~~--~~n~F~wenlP~~id~~~iE~~L~~~G~v~f~kD~~~g~ 73 (309) |+--+. -++++|.| |..|+|+++.++|.+|+..| ++++|.||++ ||||+|||++|||+|+||||||+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~v~e~~~~~~n~~f~ry~~~L~~~l~Y~~~e~~--~iD~~flE~~L~q~g~V~f~~d~~~~~ 78 (327) T protein:vir:97 1 MNNDKRGLNVELSKEISKRVVEHRNRFKRLMFNRYLEFLPLLINYTNRDTV--GIDFIQLESALRQNINVVVGEARNKQI 78 (327) T ss_pred CCCcccccceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CcCHHHHHHHHHcCCceEEEEecceeE Confidence 554332 24566776 55555555555555555554 4578888886 999999999999999999999999999 Q ss_pred ee---eccccCCCeeeccCceeeeeccccceeeecccc--------------ccccCCCCCEEEecCCcc-cCCChHHHH Q lcl|Aclame:pro 74 IA---CNGALSGQRDVYNQATVFRASSPVYQKEFKLYN--------------YRDMKEDDMGVVIYNNDM-SFPTTPTLE 135 (309) Q Consensus 74 m~---l~~~~s~~~niy~qP~~f~~~~~~~~~~f~~~~--------------y~~~~~~~~~Vvi~nN~~-~~p~~~~ie 135 (309) |+ ++++-+++.+.|++|..|.+..|.+.+.|+.+. |.+...++++||||||++ ++|++++|+ T Consensus 79 ~~lGy~~~~~~~~~p~~n~n~~~~~~~pl~~kd~~~i~~~~~~~~~~~e~~k~~d~~~~gn~VVi~Nk~~~~~~di~iie 158 (327) T protein:vir:97 79 MILGYVNNTYFNQAPNFSSNFNFQFQKRLTKEDIYFIVPDYLIPDDCLQIHKLYDNCMSGNFVVMQNKPIQYNSDIEIIE 158 (327) T ss_pred EEEeeecccccccccccccccceeecccccccceeeEeecccCccchhhccccccccccCCeeEeccCccccccchhhHH Confidence 99 556678888999999999999999999999884 334455799999999995 588899999 Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHH---HH Q lcl|Aclame:pro 136 LFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKL---NA 212 (309) Q Consensus 136 ~ya~eLaeI~~ti~~n~~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL---~~ 212 (309) |||++||||++||++|++|||+|+||+|.++++ |+++|+|+|++|||||+++|+||.|+ +||+|++|+++|+| ++ T Consensus 159 ~Ya~eLAeI~~ti~~n~~q~k~p~Iik~~~n~~-s~q~l~nki~ng~Pvv~~~~~~d~dd-~i~~~~~~~v~~~L~~lk~ 236 (327) T protein:vir:97 159 HYTDELAEVALSRFSLIMQAKFSKIFKSEINDE-SINQLVSEIYNGAPFVKMSPMFNADD-DIIDLTSNSVIPALTEMKR 236 (327) T ss_pred HHHHHHHHHHHHHHHHHhhhhCCEEEEcCCCch-hHHHHHHHHhCCcceEEeccCCCCcc-cccccccccccchhHHHHH Confidence 999999999999999999999999999999999 99999999999999999999999988 99999888766555 55 Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHHHHH Q lcl|Aclame:pro 213 QKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMRREL 292 (309) Q Consensus 213 ~k~~~~sEllT~LGInN~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~~~l 292 (309) |++++||||||||||+|+|+|||||||++||+||++||+||++||||+| +||++||++|||||||+|+++++ +.| T Consensus 237 e~~nk~nEllT~lGinn~~~dKkermv~~EA~SN~~~i~an~~Iylk~R-ea~elIN~~YGLnI~v~~~d~~~----~~l 311 (327) T protein:vir:97 237 EYQNKISELSNYLGINSLAVDKESGVSDEEAKSNRGFTTSNSNIYLKGR-EPITFLSKRYGLDIKPYYDDETT----SKI 311 (327) T ss_pred HHHHHHHHHHHHhhhccccchhhhcchhhhhhccchhhccchhhcccch-hhHHHHHHhhCcceeEeecchhh----hhH Confidence 6889999999999999999999999999999999999999999999999 89999999999999999998888 567 Q ss_pred HHHHhhhhccCCCcCC Q lcl|Aclame:pro 293 QQIENVSRGTLGGETN 308 (309) Q Consensus 293 ~~l~~~~~~~~~~~~~ 308 (309) .+++.+.+|+++.-.. T Consensus 312 s~i~~~~~~~s~~~~~ 327 (327) T protein:vir:97 312 SMVDTLFKDESSDING 327 (327) T ss_pred HHHHHhhcccccccCC Confidence 9999999999843222 No 8 >protein:vir:9466 Length: 249 # NCBI annotation: upper collar protein # Family: family:all:2168 # MgeID: mge:169 # MgeName: 44AHJD # Cross-refs: genbank:acc:NP_817313;genbank:gi:29565739;genbank:GeneID:1258929 Probab=100.00 E-value=5.3e-83 Score=471.63 Aligned_cols=225 Identities=18% Similarity=0.258 Sum_probs=197.3 Q ss_pred eeeccccCCCeeeccCceeeeecccccee--------eecccc------c------cccCCCCCEEEecCCccc-CCChH Q lcl|Aclame:pro 74 IACNGALSGQRDVYNQATVFRASSPVYQK--------EFKLYN------Y------RDMKEDDMGVVIYNNDMS-FPTTP 132 (309) Q Consensus 74 m~l~~~~s~~~niy~qP~~f~~~~~~~~~--------~f~~~~------y------~~~~~~~~~Vvi~nN~~~-~p~~~ 132 (309) |+++.+.. .+|+|++.|+.+..+.++ +|.+.+ | .+...++++||||||++. +|+++ T Consensus 1 ~~~~~~~~---~~~~~~~~~~~n~~~~~~~~l~~~di~fi~~~~l~~~~~~ql~k~~d~~~kg~~VVi~Nn~~~y~~did 77 (249) T protein:vir:94 1 MILGYVNN---TYFNQAPNFSSNFNFQFQKRLTKEDIYFIVPDYLIPDDCLQIHKLYDNCMSGNFVVMQNKPIQYNSDIE 77 (249) T ss_pred Ceeeeecc---cccccCCCcccccchhhhhccccCceeEeecccccCccceeeeccccccccCCeeEecCCccccccchh Confidence 88887776 788888888766544443 344443 3 333457999999999965 88899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHH-- Q lcl|Aclame:pro 133 TLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKL-- 210 (309) Q Consensus 133 ~ie~ya~eLaeI~~ti~~n~~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL-- 210 (309) +|+|||++||||++||++|++|||+|+||+|.++++ |+++|+|+|++|||||+++|+||.|+ +||+|++|+++|+| T Consensus 78 iie~Ya~eLAeI~~Ti~~n~~q~ktp~Iik~~~N~~-s~q~l~nki~ngePvv~~~e~~d~dd-~i~~l~~n~v~~~L~~ 155 (249) T protein:vir:94 78 IIEHYTDELAEVALSRFSLIMQAKFSKIFKSEINDE-SINQLVSEIYNGAPFVKMSPMFNADD-DIIDLTSNSVIPALTE 155 (249) T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCEEEEcCCCch-hHHHHHHHHhCCcceEEeccCCCCcc-cceecccchhchhhHH Confidence 999999999999999999999999999999999999 99999999999999999999999988 99999888766555 Q ss_pred -HHHHHHHHHHHHHhhcccccccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHH Q lcl|Aclame:pro 211 -NAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMR 289 (309) Q Consensus 211 -~~~k~~~~sEllT~LGInN~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~ 289 (309) ++|++++||||||||||+|+|+|||||||++||+||++||+||++||||+| +||++||++|||||||+|+++++ T Consensus 156 lK~e~~nk~nEllT~lGinN~~~dKkErmv~~EAsSNn~~i~an~nIylk~R-eA~elIN~~YGLnI~v~~~d~~~---- 230 (249) T protein:vir:94 156 MKREYQNKISELSNYLGINSLAVDKESGVSDEEAKSNRGFTTSNSNIYLKGR-EPITFLSKRYGLDIKPYYDDETT---- 230 (249) T ss_pred HHHHHHHHHHHHHHHhhhccccchhhhcchhhhhhccchhhccchhhcccch-hhHHHHHHhhCcceeEeecchhh---- Confidence 556889999999999999999999999999999999999999999999999 89999999999999999998888 Q ss_pred HHHHHHHhhhhccCCCcCC Q lcl|Aclame:pro 290 RELQQIENVSRGTLGGETN 308 (309) Q Consensus 290 ~~l~~l~~~~~~~~~~~~~ 308 (309) +.|.+++.+.+|+++.-.. T Consensus 231 ~~lS~i~~l~r~~s~~~~~ 249 (249) T protein:vir:94 231 SKISMVDTLFKDESSDING 249 (249) T ss_pred hhHHHHHHhhcccccccCC Confidence 6679999999999843222 No 9 >protein:vir:9445 Length: 249 # NCBI annotation: upper collar protein # Family: family:all:2168 # MgeID: mge:168 # MgeName: phiP68 # Cross-refs: genbank:acc:NP_817335;genbank:gi:29565762;genbank:GeneID:1258937 Probab=100.00 E-value=5.3e-83 Score=471.63 Aligned_cols=225 Identities=18% Similarity=0.258 Sum_probs=197.3 Q ss_pred eeeccccCCCeeeccCceeeeecccccee--------eecccc------c------cccCCCCCEEEecCCccc-CCChH Q lcl|Aclame:pro 74 IACNGALSGQRDVYNQATVFRASSPVYQK--------EFKLYN------Y------RDMKEDDMGVVIYNNDMS-FPTTP 132 (309) Q Consensus 74 m~l~~~~s~~~niy~qP~~f~~~~~~~~~--------~f~~~~------y------~~~~~~~~~Vvi~nN~~~-~p~~~ 132 (309) |+++.+.. .+|+|++.|+.+..+.++ +|.+.+ | .+...++++||||||++. +|+++ T Consensus 1 ~~~~~~~~---~~~~~~~~~~~n~~~~~~~~l~~~di~fi~~~~l~~~~~~ql~k~~d~~~kg~~VVi~Nn~~~y~~did 77 (249) T protein:vir:94 1 MILGYVNN---TYFNQAPNFSSNFNFQFQKRLTKEDIYFIVPDYLIPDDCLQIHKLYDNCMSGNFVVMQNKPIQYNSDIE 77 (249) T ss_pred Ceeeeecc---cccccCCCcccccchhhhhccccCceeEeecccccCccceeeeccccccccCCeeEecCCccccccchh Confidence 88887776 788888888766544443 344443 3 333457999999999965 88899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCceEEEeccCccchHHHHHHHHhCCCCeEEEccCCCcccceeeecccchhhHHH-- Q lcl|Aclame:pro 133 TLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKL-- 210 (309) Q Consensus 133 ~ie~ya~eLaeI~~ti~~n~~qqk~P~ii~a~~~n~~S~~nl~n~i~~gepvi~~~~~~d~d~i~vl~t~a~~~~dkL-- 210 (309) +|+|||++||||++||++|++|||+|+||+|.++++ |+++|+|+|++|||||+++|+||.|+ +||+|++|+++|+| T Consensus 78 iie~Ya~eLAeI~~Ti~~n~~q~ktp~Iik~~~N~~-s~q~l~nki~ngePvv~~~e~~d~dd-~i~~l~~n~v~~~L~~ 155 (249) T protein:vir:94 78 IIEHYTDELAEVALSRFSLIMQAKFSKIFKSEINDE-SINQLVSEIYNGAPFVKMSPMFNADD-DIIDLTSNSVIPALTE 155 (249) T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCEEEEcCCCch-hHHHHHHHHhCCcceEEeccCCCCcc-cceecccchhchhhHH Confidence 999999999999999999999999999999999999 99999999999999999999999988 99999888766555 Q ss_pred -HHHHHHHHHHHHHhhcccccccchhhhhhhhhhhcchhhhhhhHHhhhcchhHHHHHHHhhcCCCceEEechHHHHHHH Q lcl|Aclame:pro 211 -NAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLDVKVRFRYDIVEQMR 289 (309) Q Consensus 211 -~~~k~~~~sEllT~LGInN~n~DKkERlv~~Ea~sNn~~i~a~~~i~lk~RleA~e~IN~~yGlnI~v~~~~~~v~~~~ 289 (309) ++|++++||||||||||+|+|+|||||||++||+||++||+||++||||+| +||++||++|||||||+|+++++ T Consensus 156 lK~e~~nk~nEllT~lGinN~~~dKkErmv~~EAsSNn~~i~an~nIylk~R-eA~elIN~~YGLnI~v~~~d~~~---- 230 (249) T protein:vir:94 156 MKREYQNKISELSNYLGINSLAVDKESGVSDEEAKSNRGFTTSNSNIYLKGR-EPITFLSKRYGLDIKPYYDDETT---- 230 (249) T ss_pred HHHHHHHHHHHHHHHhhhccccchhhhcchhhhhhccchhhccchhhcccch-hhHHHHHHhhCcceeEeecchhh---- Confidence 556889999999999999999999999999999999999999999999999 89999999999999999998888 Q ss_pred HHHHHHHhhhhccCCCcCC Q lcl|Aclame:pro 290 RELQQIENVSRGTLGGETN 308 (309) Q Consensus 290 ~~l~~l~~~~~~~~~~~~~ 308 (309) +.|.+++.+.+|+++.-.. T Consensus 231 ~~lS~i~~l~r~~s~~~~~ 249 (249) T protein:vir:94 231 SKISMVDTLFKDESSDING 249 (249) T ss_pred hhHHHHHHhhcccccccCC Confidence 6679999999999843222 No 10 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=19.61 E-value=2.9 Score=18.03 Aligned_cols=293 Identities=11% Similarity=0.071 Sum_probs=108.7 Q ss_pred CCcccccccCCHhHHhhhccchHHHHHHHHHHhhcccceee-----------------cCCCCCccHHHHHHHHHhcCcE Q lcl|Aclame:pro 1 MGRKRSNSYRSINEIQRQKRNRWFIHYLNYLQSLAYQLFEW-----------------ENLPPTINPSFLEKSIHQFGYV 63 (309) Q Consensus 1 m~~k~s~~~~~inki~~~~~n~~~~~y~~~~~~~~~n~F~w-----------------enlP~~id~~~iE~~L~~~G~v 63 (309) ..+++..-.+.-++|...--..+......|+.. +-++| .+++.-.-..+.+...+-.+|+ T Consensus 34 l~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g---~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~ 110 (429) T protein:vir:98 34 LQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIG---VPVQTSHENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYE 110 (429) T ss_pred ccccccccCCCcceeecchHHHHHHHHhhhhcc---cCceeecCChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEE Confidence 222221111221233222122222223333322 22222 2222222223334444445566 Q ss_pred EEEeCCccceeeeccc-cCCCeeeccCceeee---------eccccceeeecccc----ccc------c-------CCCC Q lcl|Aclame:pro 64 GFYKDPVISYIACNGA-LSGQRDVYNQATVFR---------ASSPVYQKEFKLYN----YRD------M-------KEDD 116 (309) Q Consensus 64 ~f~kD~~~g~m~l~~~-~s~~~niy~qP~~f~---------~~~~~~~~~f~~~~----y~~------~-------~~~~ 116 (309) .+|-|+. |.+.+-.. +..-+-+|++|+.-. .....+...+-..+ |.. + ...- T Consensus 111 ~v~~d~~-g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 189 (429) T protein:vir:98 111 LVFNDEN-AEAGITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGV 189 (429) T ss_pred EEEecCC-CcEEEEEEcccceEEEEeCCCCCceEEEEEEEEecCceEEEEEEeCceEEEEEecCCceEecccccccCCcc Confidence 6777764 44433333 333345676654311 11111111111100 110 1 1122 Q ss_pred CEEEecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEec-cCccchHHHHHHHHhCCCCeEEEccCCCcc- Q lcl|Aclame:pro 117 MGVVIYNNDMSFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRAN-DNNQLSLKQVYNQYEGNAPVIFAHEALDSD- 194 (309) Q Consensus 117 ~~Vvi~nN~~~~p~~~~ie~ya~eLaeI~~ti~~n~~qqk~P~ii~a~-~~n~~S~~nl~n~i~~gepvi~~~~~~d~d- 194 (309) +.|-++||..+.|+++-|.-....+..+-.-....+.....|+++.-. ....-.+.++ ....++.+...-+++ T Consensus 190 Pvv~~~n~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 264 (429) T protein:vir:98 190 PMIEYVENEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGAELDDETLKSL-----RDTRIINLKDTDAQQL 264 (429) T ss_pred ceEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCCCcchhhhH-----hhCceeeccCCCCCCc Confidence 355667888888888776666666666655555566777888766422 1111112222 223666664432211 Q ss_pred cceee--ecccchhhHHHHHHHHHHHHHHHHhhcccccccc---------hhhhhhhhhhhcchhhhhhhHHhhhcchhH Q lcl|Aclame:pro 195 SIEVF--KTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLE---------KKERMVTDEVSSNDEQIESSGTVFLKSREE 263 (309) Q Consensus 195 ~i~vl--~t~a~~~~dkL~~~k~~~~sEllT~LGInN~n~D---------KkERlv~~Ea~sNn~~i~a~~~i~lk~Rle 263 (309) +++.+ +.+... ++.........++..-+.-+...+ =|.++..-+......+...- -.++-|.. T Consensus 265 ~~~~l~~~~~~~~----~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~--~~l~~~~~ 338 (429) T protein:vir:98 265 TVEFLQKPDADAT----QEHLLDRLENLIFRTAMVANISDESFGTASGIALRYRLQAMDNLAKTKERKFM--SGMNRRYK 338 (429) T ss_pred ceeEEeecCCHHH----HHHHHHHHHHHHHHHhCccccCccccccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH Confidence 22323 233222 222222222333333333222221 12222222222222211111 12222322 Q ss_pred -HHHHHHhhcC----CCceEEechHHHHHHHHHHHHHHhhhhccC---------CCcCCC Q lcl|Aclame:pro 264 -ACEKINELYG----LDVKVRFRYDIVEQMRRELQQIENVSRGTL---------GGETNE 309 (309) Q Consensus 264 -A~e~IN~~yG----lnI~v~~~~~~v~~~~~~l~~l~~~~~~~~---------~~~~~~ 309 (309) +|..++..-+ .+|+|.|...+...+--....+..+ .|.+ |+-+|. T Consensus 339 li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl-~g~is~et~~~~l~~v~d~ 397 (429) T protein:vir:98 339 LIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNL-AGIVSEETQVGVLSIVENP 397 (429) T ss_pred HHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH-hccCchHHHHHhCCCCCCH Confidence 2233333322 3478888854443221111111111 2333 233332 Done!